2022-09-26T19:05:12,647 Created temporary directory: /tmp/pip-ephem-wheel-cache-ry7bi4ic
2022-09-26T19:05:12,653 Created temporary directory: /tmp/pip-build-tracker-84w8buoe
2022-09-26T19:05:12,653 Initialized build tracking at /tmp/pip-build-tracker-84w8buoe
2022-09-26T19:05:12,654 Created build tracker: /tmp/pip-build-tracker-84w8buoe
2022-09-26T19:05:12,654 Entered build tracker: /tmp/pip-build-tracker-84w8buoe
2022-09-26T19:05:12,655 Created temporary directory: /tmp/pip-wheel-j_zq7sji
2022-09-26T19:05:12,720 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-26T19:05:12,728 2 location(s) to search for versions of scib:
2022-09-26T19:05:12,728 * https://pypi.org/simple/scib/
2022-09-26T19:05:12,728 * https://www.piwheels.org/simple/scib/
2022-09-26T19:05:12,729 Fetching project page and analyzing links: https://pypi.org/simple/scib/
2022-09-26T19:05:12,730 Getting page https://pypi.org/simple/scib/
2022-09-26T19:05:12,733 Found index url https://pypi.org/simple
2022-09-26T19:05:12,848   Skipping link: No binaries permitted for scib: https://files.pythonhosted.org/packages/10/9c/da43e1b07575cc7e885a0704e7e580d1603765fc633d8f5d8a9f5928c945/scib-1.0.0-1-py3-none-any.whl#sha256=c34bea741f4183e34a7e8811043a50bac76ead44569ac33f65d46ed42b06c77c (from https://pypi.org/simple/scib/) (requires-python:>=3.7)
2022-09-26T19:05:12,850   Found link https://files.pythonhosted.org/packages/22/b8/e350757bc55516a7fbd7fde61d9f8b707ddf0f5cd2ed12f63387817eedce/scib-1.0.0.tar.gz#sha256=d8fa3596433fcfd7ef5cc57022f77ee7eed0dafb37eaa87800cd190b12604a4d (from https://pypi.org/simple/scib/) (requires-python:>=3.7), version: 1.0.0
2022-09-26T19:05:12,851   Skipping link: No binaries permitted for scib: https://files.pythonhosted.org/packages/7e/86/bfe1acff3a117e3ce4217302505770d8afdb22728519495f7d4f3205d509/scib-1.0.1-1-py3-none-any.whl#sha256=e1240a017257dfcda3d3626f5fba7dcde4d3d34436ef59aa6c35cfe0966f7eb1 (from https://pypi.org/simple/scib/) (requires-python:>=3.7)
2022-09-26T19:05:12,852   Found link https://files.pythonhosted.org/packages/41/50/f76907e82dd7b68544ca43197f5a4fb98fee9f1990ab325a64cd8ab5d53b/scib-1.0.1.tar.gz#sha256=6905c34606cc13737604de7af328ba42047bb8f7e5689f2f68cc55ba958a6919 (from https://pypi.org/simple/scib/) (requires-python:>=3.7), version: 1.0.1
2022-09-26T19:05:12,853   Skipping link: No binaries permitted for scib: https://files.pythonhosted.org/packages/a6/d5/57dbee153548598cf31f7cc4c95b0b71bbe98dcaffa2f1972e9c908474db/scib-1.0.2-1-py3-none-any.whl#sha256=d7d0fa9052d1463a0af008bfc006e4fccdb5c79e6e7d044549079ddbe68510ac (from https://pypi.org/simple/scib/) (requires-python:>=3.7)
2022-09-26T19:05:12,854   Found link https://files.pythonhosted.org/packages/54/bb/1b5799a0b7096e10cc70cef74e20dab4371f649702319b8c815feb11cc20/scib-1.0.2.tar.gz#sha256=d6696f8933936d8b540dd603d8da8cbe295b15bbc948520978078d479e76e453 (from https://pypi.org/simple/scib/) (requires-python:>=3.7), version: 1.0.2
2022-09-26T19:05:12,855   Skipping link: No binaries permitted for scib: https://files.pythonhosted.org/packages/a5/ec/483cbc44a07ed0605b508c50a4251c2fe5693f60ac91c767eac6b51acb73/scib-1.0.3-1-py3-none-any.whl#sha256=134ad2a840990137d5cacd55d9b4cdd7f5f208973a940440ec94013635cac04f (from https://pypi.org/simple/scib/) (requires-python:>=3.7)
2022-09-26T19:05:12,856   Found link https://files.pythonhosted.org/packages/63/19/62ccc501e0a7df531186b1cc7fd8d4fbd471e6e37e6638764fc9781c18fa/scib-1.0.3.tar.gz#sha256=1a5f67ed2de54271a2bb29f64477fd1b54a2a24d44078f798cf27bb3d28403a3 (from https://pypi.org/simple/scib/) (requires-python:>=3.7), version: 1.0.3
2022-09-26T19:05:12,857   Skipping link: No binaries permitted for scib: https://files.pythonhosted.org/packages/7b/83/25b8c5a5f600009f451ebdf4e76bcd2fe1654ed8c7bd9a69de92ffe571e2/scib-1.0.4-1-py3-none-any.whl#sha256=d41ff001e3a1ed0f949456719d8ee54b817f8052d2cabc79f3dba71c68bea33b (from https://pypi.org/simple/scib/) (requires-python:>=3.7)
2022-09-26T19:05:12,858   Found link https://files.pythonhosted.org/packages/07/27/5770f37fa9105f90d325f8d7bc53c25784ad3d4ac9fb9238f97c66abae49/scib-1.0.4.tar.gz#sha256=c2e9c6d339a87dda7011ff279002cc7925d8247a29aa59751317730fb562cefc (from https://pypi.org/simple/scib/) (requires-python:>=3.7), version: 1.0.4
2022-09-26T19:05:12,859 Fetching project page and analyzing links: https://www.piwheels.org/simple/scib/
2022-09-26T19:05:12,860 Getting page https://www.piwheels.org/simple/scib/
2022-09-26T19:05:12,862 Found index url https://www.piwheels.org/simple
2022-09-26T19:05:13,252   Skipping link: No binaries permitted for scib: https://www.piwheels.org/simple/scib/scib-1.0.3-1-py3-none-any.whl#sha256=80490ff74c95c7892522ddba73a54acfbbb6ca14200c68a25dbcf1d69969df93 (from https://www.piwheels.org/simple/scib/) (requires-python:>=3.7)
2022-09-26T19:05:13,252   Skipping link: No binaries permitted for scib: https://www.piwheels.org/simple/scib/scib-1.0.2-1-py3-none-any.whl#sha256=698589ff9d5cede77ac9a0fce95f7322af521401a86f13f49849cae8e422ec57 (from https://www.piwheels.org/simple/scib/) (requires-python:>=3.7)
2022-09-26T19:05:13,253   Skipping link: No binaries permitted for scib: https://www.piwheels.org/simple/scib/scib-1.0.1-1-py3-none-any.whl#sha256=83926e36ba76c4e67d24321b4be2b9913d33b8b3dcf166ff1c4f33965d4decea (from https://www.piwheels.org/simple/scib/) (requires-python:>=3.7)
2022-09-26T19:05:13,253   Skipping link: No binaries permitted for scib: https://www.piwheels.org/simple/scib/scib-1.0.0-1-py3-none-any.whl#sha256=3ca7168126396ecbe27544974e001404d860907b5538d13be6d9c8da41f3ec3e (from https://www.piwheels.org/simple/scib/) (requires-python:>=3.7)
2022-09-26T19:05:13,254 Skipping link: not a file: https://www.piwheels.org/simple/scib/
2022-09-26T19:05:13,255 Skipping link: not a file: https://pypi.org/simple/scib/
2022-09-26T19:05:13,290 Given no hashes to check 1 links for project 'scib': discarding no candidates
2022-09-26T19:05:13,322 Collecting scib==1.0.4
2022-09-26T19:05:13,326   Created temporary directory: /tmp/pip-unpack-5hg4g_gm
2022-09-26T19:05:13,565   Downloading scib-1.0.4.tar.gz (68 kB)
2022-09-26T19:05:13,836   Added scib==1.0.4 from https://files.pythonhosted.org/packages/07/27/5770f37fa9105f90d325f8d7bc53c25784ad3d4ac9fb9238f97c66abae49/scib-1.0.4.tar.gz#sha256=c2e9c6d339a87dda7011ff279002cc7925d8247a29aa59751317730fb562cefc to build tracker '/tmp/pip-build-tracker-84w8buoe'
2022-09-26T19:05:13,845   Created temporary directory: /tmp/pip-build-env-c6e6kcsi
2022-09-26T19:05:13,860   Created temporary directory: /tmp/pip-standalone-pip-oiw1vldy
2022-09-26T19:05:16,261   Installing build dependencies: started
2022-09-26T19:05:16,263   Running command pip subprocess to install build dependencies
2022-09-26T19:05:25,981   Using pip 22.1.2 from /tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip (python 3.7)
2022-09-26T19:05:27,855   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-26T19:05:32,304   Collecting setuptools
2022-09-26T19:05:32,591     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.4.0-py3-none-any.whl (1.2 MB)
2022-09-26T19:05:33,254   Collecting wheel
2022-09-26T19:05:33,292     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-09-26T19:05:47,152   Installing collected packages: wheel, setuptools
2022-09-26T19:05:47,432     Creating /tmp/pip-build-env-c6e6kcsi/overlay/bin
2022-09-26T19:05:47,437     changing mode of /tmp/pip-build-env-c6e6kcsi/overlay/bin/wheel to 755
2022-09-26T19:05:52,378   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2022-09-26T19:05:52,379   espnet-onnx 0.1.9 requires espnet-tts-frontend, which is not installed.
2022-09-26T19:05:52,379   espnet-onnx 0.1.9 requires g2p-en, which is not installed.
2022-09-26T19:05:52,380   espnet-onnx 0.1.9 requires jamo==0.4.1, which is not installed.
2022-09-26T19:05:52,380   espnet-onnx 0.1.9 requires librosa>=0.8.0, which is not installed.
2022-09-26T19:05:52,380   espnet-onnx 0.1.9 requires onnxruntime>=1.4.0, which is not installed.
2022-09-26T19:05:52,381   espnet-onnx 0.1.9 requires sentencepiece!=0.1.92,>=0.1.91, which is not installed.
2022-09-26T19:05:52,381   espnet-onnx 0.1.9 requires typeguard>=2.7.0, which is not installed.
2022-09-26T19:05:52,381   espnet-onnx 0.1.9 requires numpy<=1.21.3, but you have numpy 1.21.4 which is incompatible.
2022-09-26T19:05:52,382   Successfully installed setuptools-65.4.0 wheel-0.37.1
2022-09-26T19:05:52,635   --- Logging error ---
2022-09-26T19:05:52,635   Traceback (most recent call last):
2022-09-26T19:05:52,636     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-09-26T19:05:52,636       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-09-26T19:05:52,636     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-09-26T19:05:52,637       extend(render(renderable, render_options))
2022-09-26T19:05:52,637     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-09-26T19:05:52,637       for render_output in iter_render:
2022-09-26T19:05:52,638     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-09-26T19:05:52,638       for line in lines:
2022-09-26T19:05:52,639     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-09-26T19:05:52,639       for segment in segments:
2022-09-26T19:05:52,639     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-09-26T19:05:52,640       renderable = rich_cast(renderable)
2022-09-26T19:05:52,640     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-09-26T19:05:52,640       renderable = cast_method()
2022-09-26T19:05:52,641     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-09-26T19:05:52,641       pip_cmd = get_best_invocation_for_this_pip()
2022-09-26T19:05:52,641     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 60, in get_best_invocation_for_this_pip
2022-09-26T19:05:52,642       os.path.join(binary_prefix, exe_name),
2022-09-26T19:05:52,642     File "/usr/lib/python3.7/genericpath.py", line 97, in samefile
2022-09-26T19:05:52,642       s2 = os.stat(f2)
2022-09-26T19:05:52,643   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.7'
2022-09-26T19:05:52,643   Call stack:
2022-09-26T19:05:52,643     File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main
2022-09-26T19:05:52,644       "__main__", mod_spec)
2022-09-26T19:05:52,644     File "/usr/lib/python3.7/runpy.py", line 85, in _run_code
2022-09-26T19:05:52,644       exec(code, run_globals)
2022-09-26T19:05:52,644     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-09-26T19:05:52,645       sys.exit(_main())
2022-09-26T19:05:52,645     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-09-26T19:05:52,645       return command.main(cmd_args)
2022-09-26T19:05:52,646     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-09-26T19:05:52,646       return self._main(args)
2022-09-26T19:05:52,646     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-09-26T19:05:52,647       self.handle_pip_version_check(options)
2022-09-26T19:05:52,647     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-09-26T19:05:52,647       pip_self_version_check(session, options)
2022-09-26T19:05:52,648     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-09-26T19:05:52,648       logger.info("[present-rich] %s", upgrade_prompt)
2022-09-26T19:05:52,649     File "/usr/lib/python3.7/logging/__init__.py", line 1383, in info
2022-09-26T19:05:52,649       self._log(INFO, msg, args, **kwargs)
2022-09-26T19:05:52,649     File "/usr/lib/python3.7/logging/__init__.py", line 1519, in _log
2022-09-26T19:05:52,649       self.handle(record)
2022-09-26T19:05:52,650     File "/usr/lib/python3.7/logging/__init__.py", line 1529, in handle
2022-09-26T19:05:52,650       self.callHandlers(record)
2022-09-26T19:05:52,650     File "/usr/lib/python3.7/logging/__init__.py", line 1591, in callHandlers
2022-09-26T19:05:52,651       hdlr.handle(record)
2022-09-26T19:05:52,651     File "/usr/lib/python3.7/logging/__init__.py", line 905, in handle
2022-09-26T19:05:52,651       self.emit(record)
2022-09-26T19:05:52,652     File "/tmp/pip-standalone-pip-oiw1vldy/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-09-26T19:05:52,652       self.handleError(record)
2022-09-26T19:05:52,652   Message: '[present-rich] %s'
2022-09-26T19:05:52,653   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-09-26T19:05:53,166   Installing build dependencies: finished with status 'done'
2022-09-26T19:05:53,194   Getting requirements to build wheel: started
2022-09-26T19:05:53,196   Running command Getting requirements to build wheel
2022-09-26T19:05:55,127   Compile knn_graph C++ code for LISI metric...
2022-09-26T19:06:07,971   running egg_info
2022-09-26T19:06:08,614   writing scib.egg-info/PKG-INFO
2022-09-26T19:06:09,220   writing dependency_links to scib.egg-info/dependency_links.txt
2022-09-26T19:06:12,238   writing requirements to scib.egg-info/requires.txt
2022-09-26T19:06:12,846   writing top-level names to scib.egg-info/top_level.txt
2022-09-26T19:06:13,586   reading manifest file 'scib.egg-info/SOURCES.txt'
2022-09-26T19:06:13,593   reading manifest template 'MANIFEST.in'
2022-09-26T19:06:13,595   adding license file 'LICENSE.txt'
2022-09-26T19:06:13,603   writing manifest file 'scib.egg-info/SOURCES.txt'
2022-09-26T19:06:13,829   Getting requirements to build wheel: finished with status 'done'
2022-09-26T19:06:13,850   Created temporary directory: /tmp/pip-modern-metadata-5qmfsd2y
2022-09-26T19:06:13,855   Preparing metadata (pyproject.toml): started
2022-09-26T19:06:13,858   Running command Preparing metadata (pyproject.toml)
2022-09-26T19:06:15,703   Compile knn_graph C++ code for LISI metric...
2022-09-26T19:06:27,866   running dist_info
2022-09-26T19:06:28,522   creating /tmp/pip-modern-metadata-5qmfsd2y/scib.egg-info
2022-09-26T19:06:29,149   writing /tmp/pip-modern-metadata-5qmfsd2y/scib.egg-info/PKG-INFO
2022-09-26T19:06:29,745   writing dependency_links to /tmp/pip-modern-metadata-5qmfsd2y/scib.egg-info/dependency_links.txt
2022-09-26T19:06:32,706   writing requirements to /tmp/pip-modern-metadata-5qmfsd2y/scib.egg-info/requires.txt
2022-09-26T19:06:33,298   writing top-level names to /tmp/pip-modern-metadata-5qmfsd2y/scib.egg-info/top_level.txt
2022-09-26T19:06:33,302   writing manifest file '/tmp/pip-modern-metadata-5qmfsd2y/scib.egg-info/SOURCES.txt'
2022-09-26T19:06:34,032   reading manifest file '/tmp/pip-modern-metadata-5qmfsd2y/scib.egg-info/SOURCES.txt'
2022-09-26T19:06:34,036   reading manifest template 'MANIFEST.in'
2022-09-26T19:06:34,038   adding license file 'LICENSE.txt'
2022-09-26T19:06:34,045   writing manifest file '/tmp/pip-modern-metadata-5qmfsd2y/scib.egg-info/SOURCES.txt'
2022-09-26T19:06:34,049   creating '/tmp/pip-modern-metadata-5qmfsd2y/scib-1.0.4.dist-info'
2022-09-26T19:06:34,385   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2022-09-26T19:06:34,631   Preparing metadata (pyproject.toml): finished with status 'done'
2022-09-26T19:06:34,648   Source in /tmp/pip-wheel-j_zq7sji/scib_fa5d10d07ed342f58b6790e007f919dd has version 1.0.4, which satisfies requirement scib==1.0.4 from https://files.pythonhosted.org/packages/07/27/5770f37fa9105f90d325f8d7bc53c25784ad3d4ac9fb9238f97c66abae49/scib-1.0.4.tar.gz#sha256=c2e9c6d339a87dda7011ff279002cc7925d8247a29aa59751317730fb562cefc
2022-09-26T19:06:34,651   Removed scib==1.0.4 from https://files.pythonhosted.org/packages/07/27/5770f37fa9105f90d325f8d7bc53c25784ad3d4ac9fb9238f97c66abae49/scib-1.0.4.tar.gz#sha256=c2e9c6d339a87dda7011ff279002cc7925d8247a29aa59751317730fb562cefc from build tracker '/tmp/pip-build-tracker-84w8buoe'
2022-09-26T19:06:34,667 Created temporary directory: /tmp/pip-unpack-52glm22z
2022-09-26T19:06:34,668 Building wheels for collected packages: scib
2022-09-26T19:06:34,678   Created temporary directory: /tmp/pip-wheel-yqz2x9z5
2022-09-26T19:06:34,679   Destination directory: /tmp/pip-wheel-yqz2x9z5
2022-09-26T19:06:34,684   Building wheel for scib (pyproject.toml): started
2022-09-26T19:06:34,686   Running command Building wheel for scib (pyproject.toml)
2022-09-26T19:06:36,547   Compile knn_graph C++ code for LISI metric...
2022-09-26T19:06:48,251   running bdist_wheel
2022-09-26T19:06:49,510   running build
2022-09-26T19:06:49,510   running build_py
2022-09-26T19:06:50,156   creating build
2022-09-26T19:06:50,156   creating build/lib
2022-09-26T19:06:50,157   creating build/lib/scib
2022-09-26T19:06:50,160   copying scib/_package_tools.py -> build/lib/scib
2022-09-26T19:06:50,164   copying scib/__init__.py -> build/lib/scib
2022-09-26T19:06:50,168   copying scib/exceptions.py -> build/lib/scib
2022-09-26T19:06:50,172   copying scib/preprocessing.py -> build/lib/scib
2022-09-26T19:06:50,177   copying scib/integration.py -> build/lib/scib
2022-09-26T19:06:50,182   copying scib/trajectory_inference.py -> build/lib/scib
2022-09-26T19:06:50,185   copying scib/utils.py -> build/lib/scib
2022-09-26T19:06:50,191   creating build/lib/scib/metrics
2022-09-26T19:06:50,193   copying scib/metrics/clustering.py -> build/lib/scib/metrics
2022-09-26T19:06:50,196   copying scib/metrics/__init__.py -> build/lib/scib/metrics
2022-09-26T19:06:50,200   copying scib/metrics/silhouette.py -> build/lib/scib/metrics
2022-09-26T19:06:50,205   copying scib/metrics/lisi.py -> build/lib/scib/metrics
2022-09-26T19:06:50,213   copying scib/metrics/highly_variable_genes.py -> build/lib/scib/metrics
2022-09-26T19:06:50,217   copying scib/metrics/graph_connectivity.py -> build/lib/scib/metrics
2022-09-26T19:06:50,220   copying scib/metrics/nmi.py -> build/lib/scib/metrics
2022-09-26T19:06:50,224   copying scib/metrics/metrics.py -> build/lib/scib/metrics
2022-09-26T19:06:50,229   copying scib/metrics/ari.py -> build/lib/scib/metrics
2022-09-26T19:06:50,233   copying scib/metrics/cell_cycle.py -> build/lib/scib/metrics
2022-09-26T19:06:50,237   copying scib/metrics/kbet.py -> build/lib/scib/metrics
2022-09-26T19:06:50,241   copying scib/metrics/pcr.py -> build/lib/scib/metrics
2022-09-26T19:06:50,245   copying scib/metrics/utils.py -> build/lib/scib/metrics
2022-09-26T19:06:50,249   copying scib/metrics/trajectory.py -> build/lib/scib/metrics
2022-09-26T19:06:50,253   copying scib/metrics/isolated_labels.py -> build/lib/scib/metrics
2022-09-26T19:06:50,264   creating build/lib/scib/resources
2022-09-26T19:06:50,265   copying scib/resources/g2m_genes_tirosh.txt -> build/lib/scib/resources
2022-09-26T19:06:50,270   copying scib/resources/s_genes_tirosh.txt -> build/lib/scib/resources
2022-09-26T19:06:50,274   copying scib/resources/g2m_genes_tirosh_hm.txt -> build/lib/scib/resources
2022-09-26T19:06:50,277   copying scib/resources/s_genes_tirosh_hm.txt -> build/lib/scib/resources
2022-09-26T19:06:50,281   creating build/lib/scib/knn_graph
2022-09-26T19:06:50,283   copying scib/knn_graph/makefile -> build/lib/scib/knn_graph
2022-09-26T19:06:50,287   copying scib/knn_graph/README.md -> build/lib/scib/knn_graph
2022-09-26T19:06:50,291   copying scib/knn_graph/knn_graph.o -> build/lib/scib/knn_graph
2022-09-26T19:06:50,297   copying scib/knn_graph/knn_graph.cpp -> build/lib/scib/knn_graph
2022-09-26T19:06:51,585   installing to build/bdist.linux-armv7l/wheel
2022-09-26T19:06:51,585   running install
2022-09-26T19:06:51,648   running install_lib
2022-09-26T19:06:52,286   creating build/bdist.linux-armv7l
2022-09-26T19:06:52,286   creating build/bdist.linux-armv7l/wheel
2022-09-26T19:06:52,290   creating build/bdist.linux-armv7l/wheel/scib
2022-09-26T19:06:52,293   creating build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,295   copying build/lib/scib/metrics/clustering.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,298   copying build/lib/scib/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,302   copying build/lib/scib/metrics/silhouette.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,305   copying build/lib/scib/metrics/lisi.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,311   copying build/lib/scib/metrics/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,314   copying build/lib/scib/metrics/graph_connectivity.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,318   copying build/lib/scib/metrics/nmi.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,322   copying build/lib/scib/metrics/metrics.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,326   copying build/lib/scib/metrics/ari.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,330   copying build/lib/scib/metrics/cell_cycle.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,334   copying build/lib/scib/metrics/kbet.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,338   copying build/lib/scib/metrics/pcr.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,342   copying build/lib/scib/metrics/utils.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,346   copying build/lib/scib/metrics/trajectory.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,350   copying build/lib/scib/metrics/isolated_labels.py -> build/bdist.linux-armv7l/wheel/scib/metrics
2022-09-26T19:06:52,354   copying build/lib/scib/_package_tools.py -> build/bdist.linux-armv7l/wheel/scib
2022-09-26T19:06:52,358   creating build/bdist.linux-armv7l/wheel/scib/resources
2022-09-26T19:06:52,359   copying build/lib/scib/resources/g2m_genes_tirosh.txt -> build/bdist.linux-armv7l/wheel/scib/resources
2022-09-26T19:06:52,363   copying build/lib/scib/resources/s_genes_tirosh.txt -> build/bdist.linux-armv7l/wheel/scib/resources
2022-09-26T19:06:52,366   copying build/lib/scib/resources/g2m_genes_tirosh_hm.txt -> build/bdist.linux-armv7l/wheel/scib/resources
2022-09-26T19:06:52,369   copying build/lib/scib/resources/s_genes_tirosh_hm.txt -> build/bdist.linux-armv7l/wheel/scib/resources
2022-09-26T19:06:52,372   copying build/lib/scib/__init__.py -> build/bdist.linux-armv7l/wheel/scib
2022-09-26T19:06:52,376   copying build/lib/scib/exceptions.py -> build/bdist.linux-armv7l/wheel/scib
2022-09-26T19:06:52,379   copying build/lib/scib/preprocessing.py -> build/bdist.linux-armv7l/wheel/scib
2022-09-26T19:06:52,386   creating build/bdist.linux-armv7l/wheel/scib/knn_graph
2022-09-26T19:06:52,387   copying build/lib/scib/knn_graph/makefile -> build/bdist.linux-armv7l/wheel/scib/knn_graph
2022-09-26T19:06:52,391   copying build/lib/scib/knn_graph/README.md -> build/bdist.linux-armv7l/wheel/scib/knn_graph
2022-09-26T19:06:52,394   copying build/lib/scib/knn_graph/knn_graph.o -> build/bdist.linux-armv7l/wheel/scib/knn_graph
2022-09-26T19:06:52,400   copying build/lib/scib/knn_graph/knn_graph.cpp -> build/bdist.linux-armv7l/wheel/scib/knn_graph
2022-09-26T19:06:52,404   copying build/lib/scib/integration.py -> build/bdist.linux-armv7l/wheel/scib
2022-09-26T19:06:52,409   copying build/lib/scib/trajectory_inference.py -> build/bdist.linux-armv7l/wheel/scib
2022-09-26T19:06:52,412   copying build/lib/scib/utils.py -> build/bdist.linux-armv7l/wheel/scib
2022-09-26T19:06:52,414   running install_egg_info
2022-09-26T19:06:53,774   running egg_info
2022-09-26T19:06:54,413   writing scib.egg-info/PKG-INFO
2022-09-26T19:06:55,020   writing dependency_links to scib.egg-info/dependency_links.txt
2022-09-26T19:06:58,031   writing requirements to scib.egg-info/requires.txt
2022-09-26T19:06:58,636   writing top-level names to scib.egg-info/top_level.txt
2022-09-26T19:06:58,687   reading manifest file 'scib.egg-info/SOURCES.txt'
2022-09-26T19:06:58,692   reading manifest template 'MANIFEST.in'
2022-09-26T19:06:58,693   adding license file 'LICENSE.txt'
2022-09-26T19:06:58,701   writing manifest file 'scib.egg-info/SOURCES.txt'
2022-09-26T19:06:58,704   Copying scib.egg-info to build/bdist.linux-armv7l/wheel/scib-1.0.4-py3.7.egg-info
2022-09-26T19:06:58,728   running install_scripts
2022-09-26T19:06:59,006   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2022-09-26T19:06:59,015   creating build/bdist.linux-armv7l/wheel/scib-1.0.4.dist-info/WHEEL
2022-09-26T19:06:59,019   creating '/tmp/pip-wheel-yqz2x9z5/tmpt15p_47o/scib-1.0.4-1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-09-26T19:06:59,024   adding 'scib/__init__.py'
2022-09-26T19:06:59,026   adding 'scib/_package_tools.py'
2022-09-26T19:06:59,029   adding 'scib/exceptions.py'
2022-09-26T19:06:59,033   adding 'scib/integration.py'
2022-09-26T19:06:59,042   adding 'scib/preprocessing.py'
2022-09-26T19:06:59,045   adding 'scib/trajectory_inference.py'
2022-09-26T19:06:59,048   adding 'scib/utils.py'
2022-09-26T19:06:59,052   adding 'scib/knn_graph/README.md'
2022-09-26T19:06:59,056   adding 'scib/knn_graph/knn_graph.cpp'
2022-09-26T19:06:59,069   adding 'scib/knn_graph/knn_graph.o'
2022-09-26T19:06:59,072   adding 'scib/knn_graph/makefile'
2022-09-26T19:06:59,075   adding 'scib/metrics/__init__.py'
2022-09-26T19:06:59,078   adding 'scib/metrics/ari.py'
2022-09-26T19:06:59,081   adding 'scib/metrics/cell_cycle.py'
2022-09-26T19:06:59,084   adding 'scib/metrics/clustering.py'
2022-09-26T19:06:59,086   adding 'scib/metrics/graph_connectivity.py'
2022-09-26T19:06:59,089   adding 'scib/metrics/highly_variable_genes.py'
2022-09-26T19:06:59,092   adding 'scib/metrics/isolated_labels.py'
2022-09-26T19:06:59,095   adding 'scib/metrics/kbet.py'
2022-09-26T19:06:59,103   adding 'scib/metrics/lisi.py'
2022-09-26T19:06:59,108   adding 'scib/metrics/metrics.py'
2022-09-26T19:06:59,111   adding 'scib/metrics/nmi.py'
2022-09-26T19:06:59,114   adding 'scib/metrics/pcr.py'
2022-09-26T19:06:59,117   adding 'scib/metrics/silhouette.py'
2022-09-26T19:06:59,121   adding 'scib/metrics/trajectory.py'
2022-09-26T19:06:59,124   adding 'scib/metrics/utils.py'
2022-09-26T19:06:59,127   adding 'scib/resources/g2m_genes_tirosh.txt'
2022-09-26T19:06:59,130   adding 'scib/resources/g2m_genes_tirosh_hm.txt'
2022-09-26T19:06:59,132   adding 'scib/resources/s_genes_tirosh.txt'
2022-09-26T19:06:59,134   adding 'scib/resources/s_genes_tirosh_hm.txt'
2022-09-26T19:06:59,138   adding 'scib-1.0.4.dist-info/LICENSE.txt'
2022-09-26T19:06:59,141   adding 'scib-1.0.4.dist-info/METADATA'
2022-09-26T19:06:59,143   adding 'scib-1.0.4.dist-info/WHEEL'
2022-09-26T19:06:59,145   adding 'scib-1.0.4.dist-info/top_level.txt'
2022-09-26T19:06:59,147   adding 'scib-1.0.4.dist-info/RECORD'
2022-09-26T19:06:59,153   removing build/bdist.linux-armv7l/wheel
2022-09-26T19:06:59,445   Building wheel for scib (pyproject.toml): finished with status 'done'
2022-09-26T19:06:59,462   Created wheel for scib: filename=scib-1.0.4-1-py3-none-any.whl size=70798 sha256=f0979c64f941e78023ccdd9443339c55c620eadcf05f06224359946fa17bc7e2
2022-09-26T19:06:59,465   Stored in directory: /tmp/pip-ephem-wheel-cache-ry7bi4ic/wheels/d3/e2/ab/61f5dde3c6d0aa9afa6a70d43a59fe3b7f71dfa50cd442459b
2022-09-26T19:06:59,493 Successfully built scib
2022-09-26T19:06:59,507 Removed build tracker: '/tmp/pip-build-tracker-84w8buoe'