2022-09-27T06:40:16,497 Created temporary directory: /tmp/pip-ephem-wheel-cache-9f215t56
2022-09-27T06:40:16,503 Created temporary directory: /tmp/pip-build-tracker-wa5b7a94
2022-09-27T06:40:16,503 Initialized build tracking at /tmp/pip-build-tracker-wa5b7a94
2022-09-27T06:40:16,504 Created build tracker: /tmp/pip-build-tracker-wa5b7a94
2022-09-27T06:40:16,504 Entered build tracker: /tmp/pip-build-tracker-wa5b7a94
2022-09-27T06:40:16,506 Created temporary directory: /tmp/pip-wheel-v0u0cdk_
2022-09-27T06:40:16,579 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-27T06:40:16,588 2 location(s) to search for versions of capice:
2022-09-27T06:40:16,588 * https://pypi.org/simple/capice/
2022-09-27T06:40:16,588 * https://www.piwheels.org/simple/capice/
2022-09-27T06:40:16,589 Fetching project page and analyzing links: https://pypi.org/simple/capice/
2022-09-27T06:40:16,590 Getting page https://pypi.org/simple/capice/
2022-09-27T06:40:16,593 Found index url https://pypi.org/simple
2022-09-27T06:40:16,718   Found link https://files.pythonhosted.org/packages/2b/cf/eeb11d53ea46d9463d108113249f8a5b8c3023b3822835fd2579c3351924/capice-3.0.0rc0.tar.gz#sha256=580f1298bafd091d86b5ded841588032f72e40035de04a7ec5fc1516c9edc2b2 (from https://pypi.org/simple/capice/) (requires-python:>=3.7), version: 3.0.0rc0
2022-09-27T06:40:16,720   Found link https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz#sha256=b5eb8501028078b58b078728cb5927d30f736dec35d8d17784807fb18bece558 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc1
2022-09-27T06:40:16,721   Found link https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz#sha256=fd1c7a04ef0b10576b9843cecc7a188c20ae39edb4ed4a8fec27c8abc13d23f4 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc2
2022-09-27T06:40:16,723   Found link https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz#sha256=331d26cc87603dd46c81b0d670c6c27566c204ef5f68a150de9dced4d4d46018 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc3
2022-09-27T06:40:16,725   Found link https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz#sha256=367c328ad9259ebe6610ea4e335d073cad41187bef8d7461ee2c936f9f66de26 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc4
2022-09-27T06:40:16,726   Found link https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz#sha256=a50e36cca3b5152d62d295cd04dc7d30cd4f1ef9d8fa57e22e248fc525b1c3eb (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0
2022-09-27T06:40:16,727   Found link https://files.pythonhosted.org/packages/d4/b4/16c7d979e9bbc625d3914a08da81d0ad0b7960e87b555bb193f5aa3e3d6a/capice-3.1.0.tar.gz#sha256=dea305de80545a7a0dbf2beac54412500af956d0d02d214fc50dd31dd4af8e95 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.1.0
2022-09-27T06:40:16,729   Found link https://files.pythonhosted.org/packages/64/e1/52f85026c4aa93f4a09f2dc8b517abb86d471a8e6b202533c63780fa70e1/capice-3.1.1.tar.gz#sha256=0790bb06d06ebfd6b8314ed31fbb06c31caac1a85a51d4c837efdc060886df4f (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.1.1
2022-09-27T06:40:16,730   Found link https://files.pythonhosted.org/packages/1d/b1/69553bd909b8e972ebf1912f60e71d4ccfa44b221b4ec7d1ae1d5b5c8165/capice-3.1.2.tar.gz#sha256=244c612dd6058df96b21011a5460e69ef9b887dedf64fa7526cd65538c3c39a9 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.1.2
2022-09-27T06:40:16,732   Found link https://files.pythonhosted.org/packages/6b/2e/1bae984c4c990f95db34a0d12b327083437649d05d93606618d6030b8cfb/capice-3.2.0.tar.gz#sha256=23bafed2b9bf8b449d4cc33c058b06d50665be06bfeb856f5c59713e20a515b4 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.2.0
2022-09-27T06:40:16,733   Found link https://files.pythonhosted.org/packages/f2/46/3fed1bfa6a7e413dda2dcacc72ebcba5cd27e81a300314e8c6b440ba0652/capice-3.2.1.tar.gz#sha256=691c7cd66ea6422e02e31dbee55706a525849aebe43994ac4a0cb05ae94bda3c (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.2.1
2022-09-27T06:40:16,734   Found link https://files.pythonhosted.org/packages/8e/ec/a0d20fce261cadb53b7674ce6d83f21587812c3d7ed4552c2876e32401b2/capice-3.3.0.tar.gz#sha256=8f4987e84311eafa4e58e7e529bb11fa2b4f0b323b2688642c755d41e87254a4 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.3.0
2022-09-27T06:40:16,736   Found link https://files.pythonhosted.org/packages/e4/39/4c67eadadb4e9ee8b008065c117d11eed66c173c8f03ac1a66c0c80230b0/capice-4.0.0rc1.tar.gz#sha256=09e87c5726605ccd97cc08f6421166905330954214e992d61b2e91f6b7b15634 (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 4.0.0rc1
2022-09-27T06:40:16,737   Found link https://files.pythonhosted.org/packages/c8/d4/0b8b9a2459e3bf9ac9ee9fbbfcef0cf633423cd1164d247ef5b35e6bcc1d/capice-4.0.0rc2.tar.gz#sha256=f32081a09582111b1e4f6103819e003122a05ccb0a1872d9035d06bfd0edee9f (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 4.0.0rc2
2022-09-27T06:40:16,738 Fetching project page and analyzing links: https://www.piwheels.org/simple/capice/
2022-09-27T06:40:16,739 Getting page https://www.piwheels.org/simple/capice/
2022-09-27T06:40:16,741 Found index url https://www.piwheels.org/simple
2022-09-27T06:40:17,015   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-4.0.0rc1-py3-none-any.whl#sha256=2ffdc4d32ff14ea03e7417e65ac6f49c3fb84ebc8a2b0e904801a4762469b21c (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,016   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.3.0-py3-none-any.whl#sha256=b9a9a3cdfdb1ab474a6183c643babd3470fa84e8c5e3b2c8099a9ffee1c41956 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,016   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.2.1-py3-none-any.whl#sha256=caad9b489f7b29a386b2dce7cb3e01d94d301d2b01ba16e3e094c7aa91435063 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,017   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.2.0-py3-none-any.whl#sha256=b6968da8c90315bcb78449563ad20ff306de8792c485fb03fe2eed8cf19d9f8f (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,017   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.1.1-py3-none-any.whl#sha256=4a76c336e6de10af5b82b9e4beb6bb7c2c8eaf792b1b9ab51e6aa14e45068559 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,018   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.1.0-py3-none-any.whl#sha256=ca32fea76a4d432bfaf9ba50b17860b5e1859f71b8ee95ccc9cee625690e6217 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,018   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0-py3-none-any.whl#sha256=822a9c4b54c3814a1879371edfcd207b4c59c26e284a85b4367d4f9c0e070a8b (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,019   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc4-py3-none-any.whl#sha256=b8174ee252046b7075aa5b0bff762c95a39bef20b98a032f842c74b1e7bf9a29 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,019   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc3-py3-none-any.whl#sha256=4ee7f781a7a6edacfb38af661fab250bdb707a6f63b57c56612ff132ceb55c74 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,020   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc2-py3-none-any.whl#sha256=f67afcd30fc1b242beb1b3631528be28745036179d8f8ff75fdd07d13c163206 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,020   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc1-py3-none-any.whl#sha256=1f1a3830a436ef9f9f34370a93dea81e04b8e4761fd8ecae8ce10955c1dddac2 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-09-27T06:40:17,021   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc0-py3-none-any.whl#sha256=db7e870e65a264aa8b90e67c7ad2b62ed2662d850fac021fe20eafa759ccd21a (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.7)
2022-09-27T06:40:17,022 Skipping link: not a file: https://www.piwheels.org/simple/capice/
2022-09-27T06:40:17,022 Skipping link: not a file: https://pypi.org/simple/capice/
2022-09-27T06:40:17,072 Given no hashes to check 1 links for project 'capice': discarding no candidates
2022-09-27T06:40:17,114 Collecting capice==4.0.0rc2
2022-09-27T06:40:17,118   Created temporary directory: /tmp/pip-unpack-v8nz9pae
2022-09-27T06:40:17,626   Downloading capice-4.0.0rc2.tar.gz (35 kB)
2022-09-27T06:40:17,897   Added capice==4.0.0rc2 from https://files.pythonhosted.org/packages/c8/d4/0b8b9a2459e3bf9ac9ee9fbbfcef0cf633423cd1164d247ef5b35e6bcc1d/capice-4.0.0rc2.tar.gz#sha256=f32081a09582111b1e4f6103819e003122a05ccb0a1872d9035d06bfd0edee9f to build tracker '/tmp/pip-build-tracker-wa5b7a94'
2022-09-27T06:40:17,900   Running setup.py (path:/tmp/pip-wheel-v0u0cdk_/capice_8d3b4d65955d47cfa6e12b254fca95a8/setup.py) egg_info for package capice
2022-09-27T06:40:17,901   Created temporary directory: /tmp/pip-pip-egg-info-pzad06yd
2022-09-27T06:40:17,902   Preparing metadata (setup.py): started
2022-09-27T06:40:17,904   Running command python setup.py egg_info
2022-09-27T06:40:25,099   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing '4.0.0-rc2' to '4.0.0rc2'
2022-09-27T06:40:25,101     warnings.warn(tmpl.format(**locals()))
2022-09-27T06:40:25,832   running egg_info
2022-09-27T06:40:25,837   creating /tmp/pip-pip-egg-info-pzad06yd/capice.egg-info
2022-09-27T06:40:26,478   writing /tmp/pip-pip-egg-info-pzad06yd/capice.egg-info/PKG-INFO
2022-09-27T06:40:27,053   writing dependency_links to /tmp/pip-pip-egg-info-pzad06yd/capice.egg-info/dependency_links.txt
2022-09-27T06:40:28,743   writing entry points to /tmp/pip-pip-egg-info-pzad06yd/capice.egg-info/entry_points.txt
2022-09-27T06:40:29,876   writing requirements to /tmp/pip-pip-egg-info-pzad06yd/capice.egg-info/requires.txt
2022-09-27T06:40:30,448   writing top-level names to /tmp/pip-pip-egg-info-pzad06yd/capice.egg-info/top_level.txt
2022-09-27T06:40:30,450   writing manifest file '/tmp/pip-pip-egg-info-pzad06yd/capice.egg-info/SOURCES.txt'
2022-09-27T06:40:31,183   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-09-27T06:40:31,294   reading manifest file '/tmp/pip-pip-egg-info-pzad06yd/capice.egg-info/SOURCES.txt'
2022-09-27T06:40:31,297   adding license file 'LICENSE'
2022-09-27T06:40:31,306   writing manifest file '/tmp/pip-pip-egg-info-pzad06yd/capice.egg-info/SOURCES.txt'
2022-09-27T06:40:31,519   Preparing metadata (setup.py): finished with status 'done'
2022-09-27T06:40:31,532   Source in /tmp/pip-wheel-v0u0cdk_/capice_8d3b4d65955d47cfa6e12b254fca95a8 has version 4.0.0rc2, which satisfies requirement capice==4.0.0rc2 from https://files.pythonhosted.org/packages/c8/d4/0b8b9a2459e3bf9ac9ee9fbbfcef0cf633423cd1164d247ef5b35e6bcc1d/capice-4.0.0rc2.tar.gz#sha256=f32081a09582111b1e4f6103819e003122a05ccb0a1872d9035d06bfd0edee9f
2022-09-27T06:40:31,534   Removed capice==4.0.0rc2 from https://files.pythonhosted.org/packages/c8/d4/0b8b9a2459e3bf9ac9ee9fbbfcef0cf633423cd1164d247ef5b35e6bcc1d/capice-4.0.0rc2.tar.gz#sha256=f32081a09582111b1e4f6103819e003122a05ccb0a1872d9035d06bfd0edee9f from build tracker '/tmp/pip-build-tracker-wa5b7a94'
2022-09-27T06:40:31,549 Created temporary directory: /tmp/pip-unpack-wlygtw5d
2022-09-27T06:40:31,550 Building wheels for collected packages: capice
2022-09-27T06:40:31,560   Created temporary directory: /tmp/pip-wheel-i_vx7_13
2022-09-27T06:40:31,560   Building wheel for capice (setup.py): started
2022-09-27T06:40:31,563   Destination directory: /tmp/pip-wheel-i_vx7_13
2022-09-27T06:40:31,563   Running command python setup.py bdist_wheel
2022-09-27T06:40:38,855   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing '4.0.0-rc2' to '4.0.0rc2'
2022-09-27T06:40:38,856     warnings.warn(tmpl.format(**locals()))
2022-09-27T06:40:39,113   running bdist_wheel
2022-09-27T06:40:40,472   running build
2022-09-27T06:40:40,472   running build_py
2022-09-27T06:40:41,130   package init file 'src/molgenis/__init__.py' not found (or not a regular file)
2022-09-27T06:40:41,134   creating build
2022-09-27T06:40:41,135   creating build/lib
2022-09-27T06:40:41,136   creating build/lib/molgenis
2022-09-27T06:40:41,137   creating build/lib/molgenis/capice
2022-09-27T06:40:41,140   copying src/molgenis/capice/capice.py -> build/lib/molgenis/capice
2022-09-27T06:40:41,144   copying src/molgenis/capice/main_explain.py -> build/lib/molgenis/capice
2022-09-27T06:40:41,149   copying src/molgenis/capice/main_train.py -> build/lib/molgenis/capice
2022-09-27T06:40:41,153   copying src/molgenis/capice/main_predict.py -> build/lib/molgenis/capice
2022-09-27T06:40:41,157   copying src/molgenis/capice/main_capice.py -> build/lib/molgenis/capice
2022-09-27T06:40:41,160   copying src/molgenis/capice/__init__.py -> build/lib/molgenis/capice
2022-09-27T06:40:41,165   creating build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,167   copying src/molgenis/capice/utilities/preprocessor.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,171   copying src/molgenis/capice/utilities/predictor.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,175   copying src/molgenis/capice/utilities/manual_vep_processor.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,178   copying src/molgenis/capice/utilities/class_suggestor.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,182   copying src/molgenis/capice/utilities/column_utils.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,186   copying src/molgenis/capice/utilities/load_file_postprocessor.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,190   copying src/molgenis/capice/utilities/custom_logging_filter.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,194   copying src/molgenis/capice/utilities/dynamic_loader.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,198   copying src/molgenis/capice/utilities/input_processor.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,201   copying src/molgenis/capice/utilities/__init__.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,205   copying src/molgenis/capice/utilities/input_parser.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,209   copying src/molgenis/capice/utilities/enums.py -> build/lib/molgenis/capice/utilities
2022-09-27T06:40:41,214   creating build/lib/molgenis/capice/core
2022-09-27T06:40:41,216   copying src/molgenis/capice/core/capice_manager.py -> build/lib/molgenis/capice/core
2022-09-27T06:40:41,220   copying src/molgenis/capice/core/capice_exporter.py -> build/lib/molgenis/capice/core
2022-09-27T06:40:41,223   copying src/molgenis/capice/core/logger.py -> build/lib/molgenis/capice/core
2022-09-27T06:40:41,227   copying src/molgenis/capice/core/__init__.py -> build/lib/molgenis/capice/core
2022-09-27T06:40:41,230   copying src/molgenis/capice/core/args_handler.py -> build/lib/molgenis/capice/core
2022-09-27T06:40:41,235   creating build/lib/molgenis/capice/cli
2022-09-27T06:40:41,237   copying src/molgenis/capice/cli/args_handler_explain.py -> build/lib/molgenis/capice/cli
2022-09-27T06:40:41,241   copying src/molgenis/capice/cli/args_handler_parent.py -> build/lib/molgenis/capice/cli
2022-09-27T06:40:41,245   copying src/molgenis/capice/cli/args_handler_train.py -> build/lib/molgenis/capice/cli
2022-09-27T06:40:41,249   copying src/molgenis/capice/cli/args_handler_predict.py -> build/lib/molgenis/capice/cli
2022-09-27T06:40:41,252   copying src/molgenis/capice/cli/__init__.py -> build/lib/molgenis/capice/cli
2022-09-27T06:40:41,257   creating build/lib/molgenis/capice/vep
2022-09-27T06:40:41,259   copying src/molgenis/capice/vep/template_position.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,263   copying src/molgenis/capice/vep/cds_position.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,267   copying src/molgenis/capice/vep/sift.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,270   copying src/molgenis/capice/vep/amino_acids.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,273   copying src/molgenis/capice/vep/length.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,277   copying src/molgenis/capice/vep/template_sift_polyphen.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,280   copying src/molgenis/capice/vep/cdna_position.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,284   copying src/molgenis/capice/vep/protein_position.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,288   copying src/molgenis/capice/vep/poly_phen.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,291   copying src/molgenis/capice/vep/__init__.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,293   copying src/molgenis/capice/vep/type.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,297   copying src/molgenis/capice/vep/template.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,300   copying src/molgenis/capice/vep/seq.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,304   copying src/molgenis/capice/vep/consequence.py -> build/lib/molgenis/capice/vep
2022-09-27T06:40:41,310   creating build/lib/molgenis/capice/validators
2022-09-27T06:40:41,311   copying src/molgenis/capice/validators/post_file_parse_validator.py -> build/lib/molgenis/capice/validators
2022-09-27T06:40:41,315   copying src/molgenis/capice/validators/property_type_validator.py -> build/lib/molgenis/capice/validators
2022-09-27T06:40:41,319   copying src/molgenis/capice/validators/version_validator.py -> build/lib/molgenis/capice/validators
2022-09-27T06:40:41,322   copying src/molgenis/capice/validators/input_validator.py -> build/lib/molgenis/capice/validators
2022-09-27T06:40:41,326   copying src/molgenis/capice/validators/post_vep_processing_validator.py -> build/lib/molgenis/capice/validators
2022-09-27T06:40:41,329   copying src/molgenis/capice/validators/__init__.py -> build/lib/molgenis/capice/validators
2022-09-27T06:40:41,331   copying src/molgenis/capice/validators/model_validator.py -> build/lib/molgenis/capice/validators
2022-09-27T06:40:42,008   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-09-27T06:40:42,008     warnings.warn(
2022-09-27T06:40:42,677   installing to build/bdist.linux-armv7l/wheel
2022-09-27T06:40:42,677   running install
2022-09-27T06:40:42,739   running install_lib
2022-09-27T06:40:43,442   creating build/bdist.linux-armv7l
2022-09-27T06:40:43,443   creating build/bdist.linux-armv7l/wheel
2022-09-27T06:40:43,446   creating build/bdist.linux-armv7l/wheel/molgenis
2022-09-27T06:40:43,449   creating build/bdist.linux-armv7l/wheel/molgenis/capice
2022-09-27T06:40:43,451   copying build/lib/molgenis/capice/capice.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-09-27T06:40:43,455   copying build/lib/molgenis/capice/main_explain.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-09-27T06:40:43,459   copying build/lib/molgenis/capice/main_train.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-09-27T06:40:43,464   creating build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,466   copying build/lib/molgenis/capice/utilities/preprocessor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,471   copying build/lib/molgenis/capice/utilities/predictor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,474   copying build/lib/molgenis/capice/utilities/manual_vep_processor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,477   copying build/lib/molgenis/capice/utilities/class_suggestor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,481   copying build/lib/molgenis/capice/utilities/column_utils.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,485   copying build/lib/molgenis/capice/utilities/load_file_postprocessor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,488   copying build/lib/molgenis/capice/utilities/custom_logging_filter.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,491   copying build/lib/molgenis/capice/utilities/dynamic_loader.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,496   copying build/lib/molgenis/capice/utilities/input_processor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,500   copying build/lib/molgenis/capice/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,504   copying build/lib/molgenis/capice/utilities/input_parser.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,508   copying build/lib/molgenis/capice/utilities/enums.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-09-27T06:40:43,512   creating build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-09-27T06:40:43,514   copying build/lib/molgenis/capice/core/capice_manager.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-09-27T06:40:43,518   copying build/lib/molgenis/capice/core/capice_exporter.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-09-27T06:40:43,521   copying build/lib/molgenis/capice/core/logger.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-09-27T06:40:43,526   copying build/lib/molgenis/capice/core/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-09-27T06:40:43,528   copying build/lib/molgenis/capice/core/args_handler.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-09-27T06:40:43,533   creating build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-09-27T06:40:43,535   copying build/lib/molgenis/capice/cli/args_handler_explain.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-09-27T06:40:43,539   copying build/lib/molgenis/capice/cli/args_handler_parent.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-09-27T06:40:43,543   copying build/lib/molgenis/capice/cli/args_handler_train.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-09-27T06:40:43,548   copying build/lib/molgenis/capice/cli/args_handler_predict.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-09-27T06:40:43,552   copying build/lib/molgenis/capice/cli/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-09-27T06:40:43,554   copying build/lib/molgenis/capice/main_predict.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-09-27T06:40:43,558   copying build/lib/molgenis/capice/main_capice.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-09-27T06:40:43,562   creating build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,564   copying build/lib/molgenis/capice/vep/template_position.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,568   copying build/lib/molgenis/capice/vep/cds_position.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,571   copying build/lib/molgenis/capice/vep/sift.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,574   copying build/lib/molgenis/capice/vep/amino_acids.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,577   copying build/lib/molgenis/capice/vep/length.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,581   copying build/lib/molgenis/capice/vep/template_sift_polyphen.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,584   copying build/lib/molgenis/capice/vep/cdna_position.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,587   copying build/lib/molgenis/capice/vep/protein_position.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,591   copying build/lib/molgenis/capice/vep/poly_phen.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,594   copying build/lib/molgenis/capice/vep/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,597   copying build/lib/molgenis/capice/vep/type.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,600   copying build/lib/molgenis/capice/vep/template.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,603   copying build/lib/molgenis/capice/vep/seq.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,607   copying build/lib/molgenis/capice/vep/consequence.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-09-27T06:40:43,613   copying build/lib/molgenis/capice/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-09-27T06:40:43,618   creating build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-09-27T06:40:43,620   copying build/lib/molgenis/capice/validators/post_file_parse_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-09-27T06:40:43,623   copying build/lib/molgenis/capice/validators/property_type_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-09-27T06:40:43,627   copying build/lib/molgenis/capice/validators/version_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-09-27T06:40:43,630   copying build/lib/molgenis/capice/validators/input_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-09-27T06:40:43,634   copying build/lib/molgenis/capice/validators/post_vep_processing_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-09-27T06:40:43,637   copying build/lib/molgenis/capice/validators/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-09-27T06:40:43,640   copying build/lib/molgenis/capice/validators/model_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-09-27T06:40:43,643   running install_egg_info
2022-09-27T06:40:45,005   running egg_info
2022-09-27T06:40:45,672   writing src/capice.egg-info/PKG-INFO
2022-09-27T06:40:46,260   writing dependency_links to src/capice.egg-info/dependency_links.txt
2022-09-27T06:40:48,013   writing entry points to src/capice.egg-info/entry_points.txt
2022-09-27T06:40:49,181   writing requirements to src/capice.egg-info/requires.txt
2022-09-27T06:40:49,765   writing top-level names to src/capice.egg-info/top_level.txt
2022-09-27T06:40:49,869   reading manifest file 'src/capice.egg-info/SOURCES.txt'
2022-09-27T06:40:49,876   adding license file 'LICENSE'
2022-09-27T06:40:49,887   writing manifest file 'src/capice.egg-info/SOURCES.txt'
2022-09-27T06:40:49,890   Copying src/capice.egg-info to build/bdist.linux-armv7l/wheel/capice-4.0.0rc2-py3.9.egg-info
2022-09-27T06:40:49,919   running install_scripts
2022-09-27T06:40:50,103   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-09-27T06:40:50,114   creating build/bdist.linux-armv7l/wheel/capice-4.0.0rc2.dist-info/WHEEL
2022-09-27T06:40:50,119   creating '/tmp/pip-wheel-i_vx7_13/capice-4.0.0rc2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-09-27T06:40:50,129   adding 'molgenis/capice/__init__.py'
2022-09-27T06:40:50,133   adding 'molgenis/capice/capice.py'
2022-09-27T06:40:50,136   adding 'molgenis/capice/main_capice.py'
2022-09-27T06:40:50,140   adding 'molgenis/capice/main_explain.py'
2022-09-27T06:40:50,143   adding 'molgenis/capice/main_predict.py'
2022-09-27T06:40:50,147   adding 'molgenis/capice/main_train.py'
2022-09-27T06:40:50,151   adding 'molgenis/capice/cli/__init__.py'
2022-09-27T06:40:50,154   adding 'molgenis/capice/cli/args_handler_explain.py'
2022-09-27T06:40:50,158   adding 'molgenis/capice/cli/args_handler_parent.py'
2022-09-27T06:40:50,161   adding 'molgenis/capice/cli/args_handler_predict.py'
2022-09-27T06:40:50,165   adding 'molgenis/capice/cli/args_handler_train.py'
2022-09-27T06:40:50,169   adding 'molgenis/capice/core/__init__.py'
2022-09-27T06:40:50,172   adding 'molgenis/capice/core/args_handler.py'
2022-09-27T06:40:50,176   adding 'molgenis/capice/core/capice_exporter.py'
2022-09-27T06:40:50,179   adding 'molgenis/capice/core/capice_manager.py'
2022-09-27T06:40:50,182   adding 'molgenis/capice/core/logger.py'
2022-09-27T06:40:50,187   adding 'molgenis/capice/utilities/__init__.py'
2022-09-27T06:40:50,190   adding 'molgenis/capice/utilities/class_suggestor.py'
2022-09-27T06:40:50,193   adding 'molgenis/capice/utilities/column_utils.py'
2022-09-27T06:40:50,196   adding 'molgenis/capice/utilities/custom_logging_filter.py'
2022-09-27T06:40:50,199   adding 'molgenis/capice/utilities/dynamic_loader.py'
2022-09-27T06:40:50,202   adding 'molgenis/capice/utilities/enums.py'
2022-09-27T06:40:50,206   adding 'molgenis/capice/utilities/input_parser.py'
2022-09-27T06:40:50,209   adding 'molgenis/capice/utilities/input_processor.py'
2022-09-27T06:40:50,212   adding 'molgenis/capice/utilities/load_file_postprocessor.py'
2022-09-27T06:40:50,215   adding 'molgenis/capice/utilities/manual_vep_processor.py'
2022-09-27T06:40:50,218   adding 'molgenis/capice/utilities/predictor.py'
2022-09-27T06:40:50,222   adding 'molgenis/capice/utilities/preprocessor.py'
2022-09-27T06:40:50,226   adding 'molgenis/capice/validators/__init__.py'
2022-09-27T06:40:50,229   adding 'molgenis/capice/validators/input_validator.py'
2022-09-27T06:40:50,232   adding 'molgenis/capice/validators/model_validator.py'
2022-09-27T06:40:50,236   adding 'molgenis/capice/validators/post_file_parse_validator.py'
2022-09-27T06:40:50,239   adding 'molgenis/capice/validators/post_vep_processing_validator.py'
2022-09-27T06:40:50,242   adding 'molgenis/capice/validators/property_type_validator.py'
2022-09-27T06:40:50,245   adding 'molgenis/capice/validators/version_validator.py'
2022-09-27T06:40:50,249   adding 'molgenis/capice/vep/__init__.py'
2022-09-27T06:40:50,252   adding 'molgenis/capice/vep/amino_acids.py'
2022-09-27T06:40:50,255   adding 'molgenis/capice/vep/cdna_position.py'
2022-09-27T06:40:50,258   adding 'molgenis/capice/vep/cds_position.py'
2022-09-27T06:40:50,261   adding 'molgenis/capice/vep/consequence.py'
2022-09-27T06:40:50,264   adding 'molgenis/capice/vep/length.py'
2022-09-27T06:40:50,267   adding 'molgenis/capice/vep/poly_phen.py'
2022-09-27T06:40:50,270   adding 'molgenis/capice/vep/protein_position.py'
2022-09-27T06:40:50,273   adding 'molgenis/capice/vep/seq.py'
2022-09-27T06:40:50,276   adding 'molgenis/capice/vep/sift.py'
2022-09-27T06:40:50,279   adding 'molgenis/capice/vep/template.py'
2022-09-27T06:40:50,282   adding 'molgenis/capice/vep/template_position.py'
2022-09-27T06:40:50,285   adding 'molgenis/capice/vep/template_sift_polyphen.py'
2022-09-27T06:40:50,288   adding 'molgenis/capice/vep/type.py'
2022-09-27T06:40:50,292   adding 'capice-4.0.0rc2.dist-info/LICENSE'
2022-09-27T06:40:50,298   adding 'capice-4.0.0rc2.dist-info/METADATA'
2022-09-27T06:40:50,301   adding 'capice-4.0.0rc2.dist-info/WHEEL'
2022-09-27T06:40:50,303   adding 'capice-4.0.0rc2.dist-info/entry_points.txt'
2022-09-27T06:40:50,305   adding 'capice-4.0.0rc2.dist-info/top_level.txt'
2022-09-27T06:40:50,309   adding 'capice-4.0.0rc2.dist-info/RECORD'
2022-09-27T06:40:50,315   removing build/bdist.linux-armv7l/wheel
2022-09-27T06:40:50,596   Building wheel for capice (setup.py): finished with status 'done'
2022-09-27T06:40:50,604   Created wheel for capice: filename=capice-4.0.0rc2-py3-none-any.whl size=51976 sha256=9edddaa9ec8bdd22de63608d73b375f392d24b4b24a3140e339b90f4526b336f
2022-09-27T06:40:50,606   Stored in directory: /tmp/pip-ephem-wheel-cache-9f215t56/wheels/2d/86/ae/31c91695170591c6e56ebd57ea2278b69e17d6e454b1531686
2022-09-27T06:40:50,637 Successfully built capice
2022-09-27T06:40:50,648 Removed build tracker: '/tmp/pip-build-tracker-wa5b7a94'