2022-09-27T08:04:54,543 Created temporary directory: /tmp/pip-ephem-wheel-cache-cmke3l95
2022-09-27T08:04:54,549 Created temporary directory: /tmp/pip-build-tracker-0xky9m6e
2022-09-27T08:04:54,550 Initialized build tracking at /tmp/pip-build-tracker-0xky9m6e
2022-09-27T08:04:54,550 Created build tracker: /tmp/pip-build-tracker-0xky9m6e
2022-09-27T08:04:54,551 Entered build tracker: /tmp/pip-build-tracker-0xky9m6e
2022-09-27T08:04:54,552 Created temporary directory: /tmp/pip-wheel-mbl7pphc
2022-09-27T08:04:54,622 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-27T08:04:54,631 2 location(s) to search for versions of pybiotk:
2022-09-27T08:04:54,631 * https://pypi.org/simple/pybiotk/
2022-09-27T08:04:54,631 * https://www.piwheels.org/simple/pybiotk/
2022-09-27T08:04:54,632 Fetching project page and analyzing links: https://pypi.org/simple/pybiotk/
2022-09-27T08:04:54,633 Getting page https://pypi.org/simple/pybiotk/
2022-09-27T08:04:54,636 Found index url https://pypi.org/simple
2022-09-27T08:04:54,755   Found link https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz#sha256=d1084859e25ae3e660f8ebdc6b9e46343b087390472951edcdfe01ebc6893e2f (from https://pypi.org/simple/pybiotk/), version: 1.0.3
2022-09-27T08:04:54,756   Found link https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz#sha256=54adb083dc66b5545559eedca9edf8df2723583bc40e366cd60ed93ad9248bef (from https://pypi.org/simple/pybiotk/), version: 1.0.4
2022-09-27T08:04:54,756   Found link https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz#sha256=2c2a12e93a4ad036ebd76bf6a0fb6e0564638d18407117935a5f5b82af0617e1 (from https://pypi.org/simple/pybiotk/), version: 1.0.6
2022-09-27T08:04:54,757   Found link https://files.pythonhosted.org/packages/be/b5/ff3128b3a5181f7169f2fb8072ae82e4589c45e3c08c3964fc77b897a8cf/pybiotk-1.0.7.tar.gz#sha256=8dac3c1cc0aae2aa4d72d33c5006bd57e75d3fb95f69e267a3faa01c5022c471 (from https://pypi.org/simple/pybiotk/), version: 1.0.7
2022-09-27T08:04:54,758   Found link https://files.pythonhosted.org/packages/b7/60/f27ad0c199d09158de9f172415057312c69a824f3589e43787ea24925448/pybiotk-1.0.8.tar.gz#sha256=3daa391d73f8066f9e3b3d29c0585e1656b190163aac844b42ef20ac15f23e04 (from https://pypi.org/simple/pybiotk/), version: 1.0.8
2022-09-27T08:04:54,759 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybiotk/
2022-09-27T08:04:54,759 Getting page https://www.piwheels.org/simple/pybiotk/
2022-09-27T08:04:54,761 Found index url https://www.piwheels.org/simple
2022-09-27T08:04:54,990   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp37-cp37m-linux_armv7l.whl#sha256=ad3883b734204bdb7f690aa520d991f61667159590a41a71870dda41d888085d (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,991   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp37-cp37m-linux_armv6l.whl#sha256=ad3883b734204bdb7f690aa520d991f61667159590a41a71870dda41d888085d (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,991   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=58efd8944f51edd73913001082ed31919eaa2a61cd84bab7f9b3d6dc4bb5147c (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,992   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=58efd8944f51edd73913001082ed31919eaa2a61cd84bab7f9b3d6dc4bb5147c (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,993   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv7l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,993   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv6l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,994   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,994   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,995   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv7l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,995   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv6l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,996   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,996   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,997   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,997   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,998   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,998   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,999   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:54,999   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-09-27T08:04:55,000 Skipping link: not a file: https://www.piwheels.org/simple/pybiotk/
2022-09-27T08:04:55,000 Skipping link: not a file: https://pypi.org/simple/pybiotk/
2022-09-27T08:04:55,046 Given no hashes to check 1 links for project 'pybiotk': discarding no candidates
2022-09-27T08:04:55,088 Collecting pybiotk==1.0.8
2022-09-27T08:04:55,092   Created temporary directory: /tmp/pip-unpack-zw6rjkk8
2022-09-27T08:04:55,197   Downloading pybiotk-1.0.8.tar.gz (91 kB)
2022-09-27T08:04:55,746   Added pybiotk==1.0.8 from https://files.pythonhosted.org/packages/b7/60/f27ad0c199d09158de9f172415057312c69a824f3589e43787ea24925448/pybiotk-1.0.8.tar.gz#sha256=3daa391d73f8066f9e3b3d29c0585e1656b190163aac844b42ef20ac15f23e04 to build tracker '/tmp/pip-build-tracker-0xky9m6e'
2022-09-27T08:04:55,762   Created temporary directory: /tmp/pip-build-env-339bks12
2022-09-27T08:04:55,783   Created temporary directory: /tmp/pip-standalone-pip-iys5ymxy
2022-09-27T08:04:58,092   Installing build dependencies: started
2022-09-27T08:04:58,094   Running command pip subprocess to install build dependencies
2022-09-27T08:05:09,438   Using pip 22.1.2 from /tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip (python 3.9)
2022-09-27T08:05:11,504   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-27T08:05:16,473   Collecting setuptools>=46.1.0
2022-09-27T08:05:16,747     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.4.0-py3-none-any.whl (1.2 MB)
2022-09-27T08:05:17,711   Collecting setuptools_scm[toml]>=5
2022-09-27T08:05:17,778     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB)
2022-09-27T08:05:18,340   Collecting wheel
2022-09-27T08:05:18,372     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-09-27T08:05:22,002   Collecting Cython>=0.29.30
2022-09-27T08:05:23,018     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-09-27T08:05:23,744   Collecting tomli>=1.0.0
2022-09-27T08:05:23,789     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-09-27T08:05:24,109   Collecting typing-extensions
2022-09-27T08:05:24,147     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.3.0-py3-none-any.whl (25 kB)
2022-09-27T08:05:24,579   Collecting packaging>=20.0
2022-09-27T08:05:24,612     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-09-27T08:05:26,323   Collecting pyparsing!=3.0.5,>=2.0.2
2022-09-27T08:05:26,366     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-09-27T08:05:37,891   Installing collected packages: wheel, typing-extensions, tomli, setuptools, pyparsing, Cython, packaging, setuptools_scm
2022-09-27T08:05:38,189     Creating /tmp/pip-build-env-339bks12/overlay/bin
2022-09-27T08:05:38,194     changing mode of /tmp/pip-build-env-339bks12/overlay/bin/wheel to 755
2022-09-27T08:05:50,542     changing mode of /tmp/pip-build-env-339bks12/overlay/bin/cygdb to 755
2022-09-27T08:05:50,546     changing mode of /tmp/pip-build-env-339bks12/overlay/bin/cython to 755
2022-09-27T08:05:50,551     changing mode of /tmp/pip-build-env-339bks12/overlay/bin/cythonize to 755
2022-09-27T08:05:51,231   Successfully installed Cython-0.29.32 packaging-21.3 pyparsing-3.0.9 setuptools-65.4.0 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.3.0 wheel-0.37.1
2022-09-27T08:05:51,445   --- Logging error ---
2022-09-27T08:05:51,462   Traceback (most recent call last):
2022-09-27T08:05:51,463     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-09-27T08:05:51,463       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-09-27T08:05:51,464     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-09-27T08:05:51,464       extend(render(renderable, render_options))
2022-09-27T08:05:51,464     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-09-27T08:05:51,465       for render_output in iter_render:
2022-09-27T08:05:51,465     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-09-27T08:05:51,465       for line in lines:
2022-09-27T08:05:51,466     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-09-27T08:05:51,466       for segment in segments:
2022-09-27T08:05:51,466     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-09-27T08:05:51,466       renderable = rich_cast(renderable)
2022-09-27T08:05:51,467     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-09-27T08:05:51,467       renderable = cast_method()
2022-09-27T08:05:51,467     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-09-27T08:05:51,468       pip_cmd = get_best_invocation_for_this_pip()
2022-09-27T08:05:51,468     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-09-27T08:05:51,468       if found_executable and os.path.samefile(
2022-09-27T08:05:51,469     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-09-27T08:05:51,469       s2 = os.stat(f2)
2022-09-27T08:05:51,469   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-09-27T08:05:51,470   Call stack:
2022-09-27T08:05:51,474     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-09-27T08:05:51,474       return _run_code(code, main_globals, None,
2022-09-27T08:05:51,474     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-09-27T08:05:51,475       exec(code, run_globals)
2022-09-27T08:05:51,475     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-09-27T08:05:51,475       sys.exit(_main())
2022-09-27T08:05:51,476     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-09-27T08:05:51,476       return command.main(cmd_args)
2022-09-27T08:05:51,476     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-09-27T08:05:51,477       return self._main(args)
2022-09-27T08:05:51,477     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-09-27T08:05:51,477       self.handle_pip_version_check(options)
2022-09-27T08:05:51,478     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-09-27T08:05:51,478       pip_self_version_check(session, options)
2022-09-27T08:05:51,478     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-09-27T08:05:51,479       logger.info("[present-rich] %s", upgrade_prompt)
2022-09-27T08:05:51,479     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-09-27T08:05:51,479       self._log(INFO, msg, args, **kwargs)
2022-09-27T08:05:51,479     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-09-27T08:05:51,480       self.handle(record)
2022-09-27T08:05:51,480     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-09-27T08:05:51,480       self.callHandlers(record)
2022-09-27T08:05:51,481     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-09-27T08:05:51,481       hdlr.handle(record)
2022-09-27T08:05:51,481     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-09-27T08:05:51,482       self.emit(record)
2022-09-27T08:05:51,482     File "/tmp/pip-standalone-pip-iys5ymxy/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-09-27T08:05:51,482       self.handleError(record)
2022-09-27T08:05:51,482   Message: '[present-rich] %s'
2022-09-27T08:05:51,483   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-09-27T08:05:52,157   Installing build dependencies: finished with status 'done'
2022-09-27T08:05:52,185   Getting requirements to build wheel: started
2022-09-27T08:05:52,187   Running command Getting requirements to build wheel
2022-09-27T08:05:58,918   Compiling src/bx/bitset.pyx because it changed.
2022-09-27T08:05:58,920   Compiling src/bx/cluster.pyx because it changed.
2022-09-27T08:05:58,920   Compiling src/bx/intersection.pyx because it changed.
2022-09-27T08:05:58,920   [1/3] Cythonizing src/bx/bitset.pyx
2022-09-27T08:05:58,921   [2/3] Cythonizing src/bx/cluster.pyx
2022-09-27T08:05:58,921   [3/3] Cythonizing src/bx/intersection.pyx
2022-09-27T08:06:02,963   running egg_info
2022-09-27T08:06:03,566   writing src/pybiotk.egg-info/PKG-INFO
2022-09-27T08:06:04,132   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-09-27T08:06:05,828   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-09-27T08:06:06,963   writing requirements to src/pybiotk.egg-info/requires.txt
2022-09-27T08:06:07,531   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-09-27T08:06:08,974   listing git files failed - pretending there aren't any
2022-09-27T08:06:08,998   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-09-27T08:06:09,016   adding license file 'LICENSE.txt'
2022-09-27T08:06:09,033   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-09-27T08:06:09,396   Getting requirements to build wheel: finished with status 'done'
2022-09-27T08:06:09,425   Created temporary directory: /tmp/pip-modern-metadata-z8ddq5q6
2022-09-27T08:06:09,431   Preparing metadata (pyproject.toml): started
2022-09-27T08:06:09,433   Running command Preparing metadata (pyproject.toml)
2022-09-27T08:06:16,495   running dist_info
2022-09-27T08:06:17,121   creating /tmp/pip-modern-metadata-z8ddq5q6/pybiotk.egg-info
2022-09-27T08:06:17,710   writing /tmp/pip-modern-metadata-z8ddq5q6/pybiotk.egg-info/PKG-INFO
2022-09-27T08:06:18,277   writing dependency_links to /tmp/pip-modern-metadata-z8ddq5q6/pybiotk.egg-info/dependency_links.txt
2022-09-27T08:06:19,952   writing entry points to /tmp/pip-modern-metadata-z8ddq5q6/pybiotk.egg-info/entry_points.txt
2022-09-27T08:06:21,070   writing requirements to /tmp/pip-modern-metadata-z8ddq5q6/pybiotk.egg-info/requires.txt
2022-09-27T08:06:21,633   writing top-level names to /tmp/pip-modern-metadata-z8ddq5q6/pybiotk.egg-info/top_level.txt
2022-09-27T08:06:21,635   writing manifest file '/tmp/pip-modern-metadata-z8ddq5q6/pybiotk.egg-info/SOURCES.txt'
2022-09-27T08:06:23,057   listing git files failed - pretending there aren't any
2022-09-27T08:06:23,077   reading manifest file '/tmp/pip-modern-metadata-z8ddq5q6/pybiotk.egg-info/SOURCES.txt'
2022-09-27T08:06:23,082   adding license file 'LICENSE.txt'
2022-09-27T08:06:23,094   writing manifest file '/tmp/pip-modern-metadata-z8ddq5q6/pybiotk.egg-info/SOURCES.txt'
2022-09-27T08:06:23,097   creating '/tmp/pip-modern-metadata-z8ddq5q6/pybiotk-1.0.8.dist-info'
2022-09-27T08:06:23,327   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-09-27T08:06:23,665   Preparing metadata (pyproject.toml): finished with status 'done'
2022-09-27T08:06:23,680   Source in /tmp/pip-wheel-mbl7pphc/pybiotk_bb24b9fad3bc4f57979a5cc8842106ff has version 1.0.8, which satisfies requirement pybiotk==1.0.8 from https://files.pythonhosted.org/packages/b7/60/f27ad0c199d09158de9f172415057312c69a824f3589e43787ea24925448/pybiotk-1.0.8.tar.gz#sha256=3daa391d73f8066f9e3b3d29c0585e1656b190163aac844b42ef20ac15f23e04
2022-09-27T08:06:23,682   Removed pybiotk==1.0.8 from https://files.pythonhosted.org/packages/b7/60/f27ad0c199d09158de9f172415057312c69a824f3589e43787ea24925448/pybiotk-1.0.8.tar.gz#sha256=3daa391d73f8066f9e3b3d29c0585e1656b190163aac844b42ef20ac15f23e04 from build tracker '/tmp/pip-build-tracker-0xky9m6e'
2022-09-27T08:06:23,692 Created temporary directory: /tmp/pip-unpack-br9dnnjf
2022-09-27T08:06:23,693 Building wheels for collected packages: pybiotk
2022-09-27T08:06:23,702   Created temporary directory: /tmp/pip-wheel-2asufsli
2022-09-27T08:06:23,703   Destination directory: /tmp/pip-wheel-2asufsli
2022-09-27T08:06:23,708   Building wheel for pybiotk (pyproject.toml): started
2022-09-27T08:06:23,710   Running command Building wheel for pybiotk (pyproject.toml)
2022-09-27T08:06:30,350   running bdist_wheel
2022-09-27T08:06:31,060   running build
2022-09-27T08:06:31,060   running build_py
2022-09-27T08:06:31,674   creating build/lib.linux-armv7l-cpython-39
2022-09-27T08:06:31,675   creating build/lib.linux-armv7l-cpython-39/pybiotk
2022-09-27T08:06:31,677   copying src/pybiotk/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk
2022-09-27T08:06:31,681   creating build/lib.linux-armv7l-cpython-39/stream
2022-09-27T08:06:31,683   copying src/stream/__init__.py -> build/lib.linux-armv7l-cpython-39/stream
2022-09-27T08:06:31,686   copying src/stream/pipe.py -> build/lib.linux-armv7l-cpython-39/stream
2022-09-27T08:06:31,691   copying src/stream/stream.py -> build/lib.linux-armv7l-cpython-39/stream
2022-09-27T08:06:31,697   creating build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-09-27T08:06:31,699   copying src/pybiotk/annodb/transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-09-27T08:06:31,703   copying src/pybiotk/annodb/anno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-09-27T08:06:31,707   copying src/pybiotk/annodb/merged_transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-09-27T08:06:31,711   copying src/pybiotk/annodb/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-09-27T08:06:31,715   copying src/pybiotk/annodb/gene.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-09-27T08:06:31,720   creating build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-09-27T08:06:31,722   copying src/pybiotk/intervals/grange.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-09-27T08:06:31,726   copying src/pybiotk/intervals/merge_bed3.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-09-27T08:06:31,731   copying src/pybiotk/intervals/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-09-27T08:06:31,734   copying src/pybiotk/intervals/merge_intervals.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-09-27T08:06:31,739   creating build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-09-27T08:06:31,740   copying src/pybiotk/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-09-27T08:06:31,745   creating build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-09-27T08:06:31,746   copying src/pybiotk/convert/gtf2bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-09-27T08:06:31,751   copying src/pybiotk/convert/bam2fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-09-27T08:06:31,754   copying src/pybiotk/convert/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-09-27T08:06:31,756   copying src/pybiotk/convert/fq2fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-09-27T08:06:31,760   copying src/pybiotk/convert/bampe_order_by_name.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-09-27T08:06:31,763   copying src/pybiotk/convert/bed2bedgraph.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-09-27T08:06:31,768   creating build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-09-27T08:06:31,770   copying src/pybiotk/io/bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-09-27T08:06:31,774   copying src/pybiotk/io/fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-09-27T08:06:31,778   copying src/pybiotk/io/bw.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-09-27T08:06:31,782   copying src/pybiotk/io/bam.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-09-27T08:06:31,787   copying src/pybiotk/io/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-09-27T08:06:31,790   copying src/pybiotk/io/gtf.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-09-27T08:06:31,794   copying src/pybiotk/io/fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-09-27T08:06:31,801   creating build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,803   copying src/pybiotk/utils/subseq_analysis.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,807   copying src/pybiotk/utils/reverse_fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,810   copying src/pybiotk/utils/merge_row.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,814   copying src/pybiotk/utils/fastq_uniq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,817   copying src/pybiotk/utils/rmats_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,820   copying src/pybiotk/utils/merge_subseq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,824   copying src/pybiotk/utils/read_tables.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,827   copying src/pybiotk/utils/fastq_join.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,831   copying src/pybiotk/utils/seq_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,834   copying src/pybiotk/utils/reference_count.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,837   copying src/pybiotk/utils/fragment_size.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,841   copying src/pybiotk/utils/normalize.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,845   copying src/pybiotk/utils/pyanno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,849   copying src/pybiotk/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,852   copying src/pybiotk/utils/gtf_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,856   copying src/pybiotk/utils/bam_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,859   copying src/pybiotk/utils/fastx_rename.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,862   copying src/pybiotk/utils/fasta_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,866   copying src/pybiotk/utils/summary_log.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,870   copying src/pybiotk/utils/utils.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-09-27T08:06:31,874   running egg_info
2022-09-27T08:06:33,115   writing src/pybiotk.egg-info/PKG-INFO
2022-09-27T08:06:33,692   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-09-27T08:06:35,414   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-09-27T08:06:36,565   writing requirements to src/pybiotk.egg-info/requires.txt
2022-09-27T08:06:37,142   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-09-27T08:06:37,271   listing git files failed - pretending there aren't any
2022-09-27T08:06:37,292   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-09-27T08:06:37,308   adding license file 'LICENSE.txt'
2022-09-27T08:06:37,324   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-09-27T08:06:37,333   copying src/pybiotk/data/hg38.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-09-27T08:06:37,338   copying src/pybiotk/data/mm10.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-09-27T08:06:37,354   running build_ext
2022-09-27T08:06:37,365   building 'pybiotk.bx.bitset' extension
2022-09-27T08:06:37,367   creating build/temp.linux-armv7l-cpython-39
2022-09-27T08:06:37,367   creating build/temp.linux-armv7l-cpython-39/build
2022-09-27T08:06:37,369   creating build/temp.linux-armv7l-cpython-39/build/src
2022-09-27T08:06:37,370   creating build/temp.linux-armv7l-cpython-39/build/src/bx
2022-09-27T08:06:37,371   creating build/temp.linux-armv7l-cpython-39/src
2022-09-27T08:06:37,372   creating build/temp.linux-armv7l-cpython-39/src/bx
2022-09-27T08:06:37,374   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/bitset.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o
2022-09-27T08:06:50,479   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/binBits.c -o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o
2022-09-27T08:06:51,408   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/bits.c -o build/temp.linux-armv7l-cpython-39/src/bx/bits.o
2022-09-27T08:06:52,361   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/common.c -o build/temp.linux-armv7l-cpython-39/src/bx/common.o
2022-09-27T08:06:52,795   creating build/lib.linux-armv7l-cpython-39/pybiotk/bx
2022-09-27T08:06:52,796   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o build/temp.linux-armv7l-cpython-39/src/bx/bits.o build/temp.linux-armv7l-cpython-39/src/bx/common.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so
2022-09-27T08:06:53,106   building 'pybiotk.bx.cluster' extension
2022-09-27T08:06:53,108   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o
2022-09-27T08:06:57,974   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o
2022-09-27T08:06:59,145   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so
2022-09-27T08:06:59,394   building 'pybiotk.bx.intersection' extension
2022-09-27T08:06:59,395   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/src/bx/intersection.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o
2022-09-27T08:07:20,526   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so
2022-09-27T08:07:20,832   running build_scripts
2022-09-27T08:07:20,834   creating build/scripts-3.9
2022-09-27T08:07:20,837   copying rscripts/plot_corr.R -> build/scripts-3.9
2022-09-27T08:07:20,842   copying rscripts/plot_peak_width.R -> build/scripts-3.9
2022-09-27T08:07:20,847   copying rscripts/plot_hist.R -> build/scripts-3.9
2022-09-27T08:07:20,852   copying rscripts/diff_expr_edgeR.R -> build/scripts-3.9
2022-09-27T08:07:20,857   copying rscripts/plot_rep_cor.R -> build/scripts-3.9
2022-09-27T08:07:20,861   copying rscripts/plot_venn.R -> build/scripts-3.9
2022-09-27T08:07:20,865   copying rscripts/peak_anno.R -> build/scripts-3.9
2022-09-27T08:07:20,869   copying rscripts/plot_deeptools_fragmentsize.R -> build/scripts-3.9
2022-09-27T08:07:20,874   copying rscripts/diff_expr_DESeq2.R -> build/scripts-3.9
2022-09-27T08:07:20,878   copying rscripts/diff_expr_plot.R -> build/scripts-3.9
2022-09-27T08:07:20,884   copying rscripts/plot_bar.R -> build/scripts-3.9
2022-09-27T08:07:20,888   copying rscripts/plot_summary.R -> build/scripts-3.9
2022-09-27T08:07:20,893   copying rscripts/plot_FRiPs.R -> build/scripts-3.9
2022-09-27T08:07:20,898   copying scripts/merge_subseq.sh -> build/scripts-3.9
2022-09-27T08:07:20,902   copying scripts/fasta_len.sh -> build/scripts-3.9
2022-09-27T08:07:20,906   copying scripts/fastq_len.sh -> build/scripts-3.9
2022-09-27T08:07:20,911   copying scripts/fasta_u2t.sh -> build/scripts-3.9
2022-09-27T08:07:20,915   copying scripts/remove_duplicates.sh -> build/scripts-3.9
2022-09-27T08:07:20,919   copying scripts/get_chrom_length.sh -> build/scripts-3.9
2022-09-27T08:07:20,923   copying scripts/gtfparser.sh -> build/scripts-3.9
2022-09-27T08:07:22,175   installing to build/bdist.linux-armv7l/wheel
2022-09-27T08:07:22,175   running install
2022-09-27T08:07:22,237   running install_lib
2022-09-27T08:07:22,852   creating build/bdist.linux-armv7l
2022-09-27T08:07:22,852   creating build/bdist.linux-armv7l/wheel
2022-09-27T08:07:22,856   creating build/bdist.linux-armv7l/wheel/pybiotk
2022-09-27T08:07:22,859   creating build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-09-27T08:07:22,860   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-09-27T08:07:22,865   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/anno.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-09-27T08:07:22,869   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/merged_transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-09-27T08:07:22,874   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-09-27T08:07:22,877   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/gene.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-09-27T08:07:22,883   creating build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-09-27T08:07:22,884   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/grange.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-09-27T08:07:22,889   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_bed3.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-09-27T08:07:22,892   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-09-27T08:07:22,895   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_intervals.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-09-27T08:07:22,899   copying build/lib.linux-armv7l-cpython-39/pybiotk/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk
2022-09-27T08:07:22,903   creating build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-09-27T08:07:22,904   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-09-27T08:07:22,932   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-09-27T08:07:22,945   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-09-27T08:07:22,988   creating build/bdist.linux-armv7l/wheel/pybiotk/data
2022-09-27T08:07:22,989   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-09-27T08:07:22,993   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-09-27T08:07:22,997   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-09-27T08:07:23,001   creating build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-09-27T08:07:23,003   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/gtf2bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-09-27T08:07:23,007   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bam2fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-09-27T08:07:23,010   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-09-27T08:07:23,013   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fq2fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-09-27T08:07:23,016   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bampe_order_by_name.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-09-27T08:07:23,019   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bed2bedgraph.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-09-27T08:07:23,023   creating build/bdist.linux-armv7l/wheel/pybiotk/io
2022-09-27T08:07:23,025   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-09-27T08:07:23,030   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-09-27T08:07:23,034   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bw.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-09-27T08:07:23,037   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bam.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-09-27T08:07:23,042   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-09-27T08:07:23,045   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/gtf.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-09-27T08:07:23,049   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-09-27T08:07:23,054   creating build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,056   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/subseq_analysis.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,059   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reverse_fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,063   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_row.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,066   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_uniq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,070   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/rmats_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,073   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_subseq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,076   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/read_tables.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,080   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_join.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,084   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/seq_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,087   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reference_count.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,090   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fragment_size.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,094   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/normalize.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,097   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/pyanno.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,101   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,105   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/gtf_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,108   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/bam_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,111   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastx_rename.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,115   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fasta_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,118   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/summary_log.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,122   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/utils.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-09-27T08:07:23,127   creating build/bdist.linux-armv7l/wheel/stream
2022-09-27T08:07:23,129   copying build/lib.linux-armv7l-cpython-39/stream/__init__.py -> build/bdist.linux-armv7l/wheel/stream
2022-09-27T08:07:23,132   copying build/lib.linux-armv7l-cpython-39/stream/pipe.py -> build/bdist.linux-armv7l/wheel/stream
2022-09-27T08:07:23,136   copying build/lib.linux-armv7l-cpython-39/stream/stream.py -> build/bdist.linux-armv7l/wheel/stream
2022-09-27T08:07:23,140   running install_egg_info
2022-09-27T08:07:23,755   Copying src/pybiotk.egg-info to build/bdist.linux-armv7l/wheel/pybiotk-1.0.8-py3.9.egg-info
2022-09-27T08:07:23,787   running install_scripts
2022-09-27T08:07:23,843   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data
2022-09-27T08:07:23,844   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,846   copying build/scripts-3.9/plot_corr.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,850   copying build/scripts-3.9/merge_subseq.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,854   copying build/scripts-3.9/plot_peak_width.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,858   copying build/scripts-3.9/plot_hist.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,862   copying build/scripts-3.9/fasta_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,865   copying build/scripts-3.9/diff_expr_edgeR.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,869   copying build/scripts-3.9/plot_rep_cor.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,873   copying build/scripts-3.9/plot_venn.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,877   copying build/scripts-3.9/peak_anno.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,880   copying build/scripts-3.9/plot_deeptools_fragmentsize.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,884   copying build/scripts-3.9/diff_expr_DESeq2.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,888   copying build/scripts-3.9/fastq_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,892   copying build/scripts-3.9/diff_expr_plot.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,896   copying build/scripts-3.9/plot_bar.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,900   copying build/scripts-3.9/fasta_u2t.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,903   copying build/scripts-3.9/plot_summary.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,907   copying build/scripts-3.9/remove_duplicates.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,911   copying build/scripts-3.9/get_chrom_length.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,914   copying build/scripts-3.9/gtfparser.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,917   copying build/scripts-3.9/plot_FRiPs.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts
2022-09-27T08:07:23,920   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/plot_corr.R to 755
2022-09-27T08:07:23,921   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/merge_subseq.sh to 755
2022-09-27T08:07:23,921   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/plot_peak_width.R to 755
2022-09-27T08:07:23,922   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/plot_hist.R to 755
2022-09-27T08:07:23,922   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/fasta_len.sh to 755
2022-09-27T08:07:23,923   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/diff_expr_edgeR.R to 755
2022-09-27T08:07:23,923   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/plot_rep_cor.R to 755
2022-09-27T08:07:23,924   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/plot_venn.R to 755
2022-09-27T08:07:23,924   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/peak_anno.R to 755
2022-09-27T08:07:23,925   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/plot_deeptools_fragmentsize.R to 755
2022-09-27T08:07:23,925   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/diff_expr_DESeq2.R to 755
2022-09-27T08:07:23,926   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/fastq_len.sh to 755
2022-09-27T08:07:23,926   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/diff_expr_plot.R to 755
2022-09-27T08:07:23,926   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/plot_bar.R to 755
2022-09-27T08:07:23,927   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/fasta_u2t.sh to 755
2022-09-27T08:07:23,927   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/plot_summary.R to 755
2022-09-27T08:07:23,928   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/remove_duplicates.sh to 755
2022-09-27T08:07:23,928   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/get_chrom_length.sh to 755
2022-09-27T08:07:23,929   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/gtfparser.sh to 755
2022-09-27T08:07:23,929   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.data/scripts/plot_FRiPs.R to 755
2022-09-27T08:07:24,034   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-09-27T08:07:24,086   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.8.dist-info/WHEEL
2022-09-27T08:07:24,091   creating '/tmp/pip-wheel-2asufsli/tmpbfx7p5km/pybiotk-1.0.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-09-27T08:07:24,096   adding 'pybiotk/__init__.py'
2022-09-27T08:07:24,099   adding 'pybiotk/annodb/__init__.py'
2022-09-27T08:07:24,102   adding 'pybiotk/annodb/anno.py'
2022-09-27T08:07:24,105   adding 'pybiotk/annodb/gene.py'
2022-09-27T08:07:24,109   adding 'pybiotk/annodb/merged_transcript.py'
2022-09-27T08:07:24,112   adding 'pybiotk/annodb/transcript.py'
2022-09-27T08:07:24,346   adding 'pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so'
2022-09-27T08:07:24,440   adding 'pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so'
2022-09-27T08:07:24,772   adding 'pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so'
2022-09-27T08:07:24,789   adding 'pybiotk/convert/__init__.py'
2022-09-27T08:07:24,791   adding 'pybiotk/convert/bam2fastx.py'
2022-09-27T08:07:24,794   adding 'pybiotk/convert/bampe_order_by_name.py'
2022-09-27T08:07:24,796   adding 'pybiotk/convert/bed2bedgraph.py'
2022-09-27T08:07:24,799   adding 'pybiotk/convert/fq2fasta.py'
2022-09-27T08:07:24,802   adding 'pybiotk/convert/gtf2bed.py'
2022-09-27T08:07:24,805   adding 'pybiotk/data/__init__.py'
2022-09-27T08:07:24,810   adding 'pybiotk/data/hg38.chrom.sizes'
2022-09-27T08:07:24,813   adding 'pybiotk/data/mm10.chrom.sizes'
2022-09-27T08:07:24,817   adding 'pybiotk/intervals/__init__.py'
2022-09-27T08:07:24,819   adding 'pybiotk/intervals/grange.py'
2022-09-27T08:07:24,822   adding 'pybiotk/intervals/merge_bed3.py'
2022-09-27T08:07:24,824   adding 'pybiotk/intervals/merge_intervals.py'
2022-09-27T08:07:24,828   adding 'pybiotk/io/__init__.py'
2022-09-27T08:07:24,831   adding 'pybiotk/io/bam.py'
2022-09-27T08:07:24,834   adding 'pybiotk/io/bed.py'
2022-09-27T08:07:24,838   adding 'pybiotk/io/bw.py'
2022-09-27T08:07:24,841   adding 'pybiotk/io/fasta.py'
2022-09-27T08:07:24,843   adding 'pybiotk/io/fastq.py'
2022-09-27T08:07:24,848   adding 'pybiotk/io/gtf.py'
2022-09-27T08:07:24,852   adding 'pybiotk/utils/__init__.py'
2022-09-27T08:07:24,855   adding 'pybiotk/utils/bam_random.py'
2022-09-27T08:07:24,857   adding 'pybiotk/utils/fasta_filter.py'
2022-09-27T08:07:24,860   adding 'pybiotk/utils/fastq_join.py'
2022-09-27T08:07:24,863   adding 'pybiotk/utils/fastq_uniq.py'
2022-09-27T08:07:24,865   adding 'pybiotk/utils/fastx_rename.py'
2022-09-27T08:07:24,868   adding 'pybiotk/utils/fragment_size.py'
2022-09-27T08:07:24,871   adding 'pybiotk/utils/gtf_filter.py'
2022-09-27T08:07:24,874   adding 'pybiotk/utils/merge_row.py'
2022-09-27T08:07:24,876   adding 'pybiotk/utils/merge_subseq.py'
2022-09-27T08:07:24,879   adding 'pybiotk/utils/normalize.py'
2022-09-27T08:07:24,883   adding 'pybiotk/utils/pyanno.py'
2022-09-27T08:07:24,886   adding 'pybiotk/utils/read_tables.py'
2022-09-27T08:07:24,888   adding 'pybiotk/utils/reference_count.py'
2022-09-27T08:07:24,891   adding 'pybiotk/utils/reverse_fastx.py'
2022-09-27T08:07:24,894   adding 'pybiotk/utils/rmats_filter.py'
2022-09-27T08:07:24,896   adding 'pybiotk/utils/seq_random.py'
2022-09-27T08:07:24,899   adding 'pybiotk/utils/subseq_analysis.py'
2022-09-27T08:07:24,903   adding 'pybiotk/utils/summary_log.py'
2022-09-27T08:07:24,906   adding 'pybiotk/utils/utils.py'
2022-09-27T08:07:24,912   adding 'pybiotk-1.0.8.data/scripts/diff_expr_DESeq2.R'
2022-09-27T08:07:24,915   adding 'pybiotk-1.0.8.data/scripts/diff_expr_edgeR.R'
2022-09-27T08:07:24,918   adding 'pybiotk-1.0.8.data/scripts/diff_expr_plot.R'
2022-09-27T08:07:24,920   adding 'pybiotk-1.0.8.data/scripts/fasta_len.sh'
2022-09-27T08:07:24,922   adding 'pybiotk-1.0.8.data/scripts/fasta_u2t.sh'
2022-09-27T08:07:24,925   adding 'pybiotk-1.0.8.data/scripts/fastq_len.sh'
2022-09-27T08:07:24,927   adding 'pybiotk-1.0.8.data/scripts/get_chrom_length.sh'
2022-09-27T08:07:24,929   adding 'pybiotk-1.0.8.data/scripts/gtfparser.sh'
2022-09-27T08:07:24,932   adding 'pybiotk-1.0.8.data/scripts/merge_subseq.sh'
2022-09-27T08:07:24,934   adding 'pybiotk-1.0.8.data/scripts/peak_anno.R'
2022-09-27T08:07:24,937   adding 'pybiotk-1.0.8.data/scripts/plot_FRiPs.R'
2022-09-27T08:07:24,940   adding 'pybiotk-1.0.8.data/scripts/plot_bar.R'
2022-09-27T08:07:24,942   adding 'pybiotk-1.0.8.data/scripts/plot_corr.R'
2022-09-27T08:07:24,945   adding 'pybiotk-1.0.8.data/scripts/plot_deeptools_fragmentsize.R'
2022-09-27T08:07:24,947   adding 'pybiotk-1.0.8.data/scripts/plot_hist.R'
2022-09-27T08:07:24,950   adding 'pybiotk-1.0.8.data/scripts/plot_peak_width.R'
2022-09-27T08:07:24,953   adding 'pybiotk-1.0.8.data/scripts/plot_rep_cor.R'
2022-09-27T08:07:24,956   adding 'pybiotk-1.0.8.data/scripts/plot_summary.R'
2022-09-27T08:07:24,959   adding 'pybiotk-1.0.8.data/scripts/plot_venn.R'
2022-09-27T08:07:24,961   adding 'pybiotk-1.0.8.data/scripts/remove_duplicates.sh'
2022-09-27T08:07:24,967   adding 'stream/__init__.py'
2022-09-27T08:07:24,971   adding 'stream/pipe.py'
2022-09-27T08:07:24,974   adding 'stream/stream.py'
2022-09-27T08:07:24,976   adding 'pybiotk-1.0.8.dist-info/LICENSE.txt'
2022-09-27T08:07:24,979   adding 'pybiotk-1.0.8.dist-info/METADATA'
2022-09-27T08:07:24,981   adding 'pybiotk-1.0.8.dist-info/WHEEL'
2022-09-27T08:07:24,983   adding 'pybiotk-1.0.8.dist-info/entry_points.txt'
2022-09-27T08:07:24,985   adding 'pybiotk-1.0.8.dist-info/top_level.txt'
2022-09-27T08:07:24,988   adding 'pybiotk-1.0.8.dist-info/RECORD'
2022-09-27T08:07:25,011   removing build/bdist.linux-armv7l/wheel
2022-09-27T08:07:25,413   Building wheel for pybiotk (pyproject.toml): finished with status 'done'
2022-09-27T08:07:25,453   Created wheel for pybiotk: filename=pybiotk-1.0.8-cp39-cp39-linux_armv7l.whl size=555053 sha256=16889f2c9c5397540b9fa3bfa0396accff8dce33315140eb793f9bedb013c4ad
2022-09-27T08:07:25,455   Stored in directory: /tmp/pip-ephem-wheel-cache-cmke3l95/wheels/0e/9b/94/5bb2036b0f332e53bb494a33f7592e84b18918ed8d5b86d47c
2022-09-27T08:07:25,483 Successfully built pybiotk
2022-09-27T08:07:25,525 Removed build tracker: '/tmp/pip-build-tracker-0xky9m6e'