2022-10-03T09:16:14,288 Created temporary directory: /tmp/pip-ephem-wheel-cache-nkzf_bvj 2022-10-03T09:16:14,294 Created temporary directory: /tmp/pip-build-tracker-w6mg1d1v 2022-10-03T09:16:14,294 Initialized build tracking at /tmp/pip-build-tracker-w6mg1d1v 2022-10-03T09:16:14,295 Created build tracker: /tmp/pip-build-tracker-w6mg1d1v 2022-10-03T09:16:14,295 Entered build tracker: /tmp/pip-build-tracker-w6mg1d1v 2022-10-03T09:16:14,296 Created temporary directory: /tmp/pip-wheel-azhowt39 2022-10-03T09:16:14,366 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-03T09:16:14,374 2 location(s) to search for versions of polyply: 2022-10-03T09:16:14,374 * https://pypi.org/simple/polyply/ 2022-10-03T09:16:14,374 * https://www.piwheels.org/simple/polyply/ 2022-10-03T09:16:14,375 Fetching project page and analyzing links: https://pypi.org/simple/polyply/ 2022-10-03T09:16:14,376 Getting page https://pypi.org/simple/polyply/ 2022-10-03T09:16:14,380 Found index url https://pypi.org/simple 2022-10-03T09:16:14,578 Found link https://files.pythonhosted.org/packages/27/d1/df68703f3e73c235e05823b59a5271657847bcccdd392075b1b1da4aa701/polyply-0.0.1.tar.gz#sha256=4aebefec4a57040bf1ce245c622c917ae7510e0b37a8fa9b2381d11c3ddbc2ad (from https://pypi.org/simple/polyply/), version: 0.0.1 2022-10-03T09:16:14,579 Found link https://files.pythonhosted.org/packages/3f/35/d6ad36f78a4d71aac92d47e2831c4b3b339c6801c6dac6c3334a73a164c2/polyply-1.0.0.tar.gz#sha256=feb5c19d58ea34cc9816515e82680bfe4fa4d3e4808de5ef4629ebf47e005654 (from https://pypi.org/simple/polyply/), version: 1.0.0 2022-10-03T09:16:14,580 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/61/c4/9393a7f82554a6c494f4c09776d48e4b83650cb2065930bcf63f0a04b3f2/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://pypi.org/simple/polyply/) 2022-10-03T09:16:14,581 Found link https://files.pythonhosted.org/packages/07/50/e2bedb4e92e97d38a55c48bb46ccdb71c31980679e7c62a756daf8ac0556/polyply-1.1.0.tar.gz#sha256=49ca6b1d872ce691f1dfb4f02de4cb656db9eec9b736b7099f4d9e37bbee7297 (from https://pypi.org/simple/polyply/), version: 1.1.0 2022-10-03T09:16:14,581 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/b6/73/dae457005e36caeed515e0ddd6575f97b7b7ef0fa10ea58080b214f28bcb/polyply-1.2.0-py2.py3-none-any.whl#sha256=7c842ede1d5a88a8c1aa25ae2a30c6a67c7b4a15bfb965e104f7c7cf8ccdce31 (from https://pypi.org/simple/polyply/) 2022-10-03T09:16:14,582 Found link https://files.pythonhosted.org/packages/18/8e/2f4345b5870703a292c4a6935f371b133bf4296fb0c27277fc2b0e82b84a/polyply-1.2.0.tar.gz#sha256=d067e533b27f2379b36a238539a3b774de9cf6876c5de2706794c1749f42baff (from https://pypi.org/simple/polyply/), version: 1.2.0 2022-10-03T09:16:14,583 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/30/09/9a2dd9e4a932367c34dab96daa3358f525caf79281b782cc999c5d23e739/polyply-1.2.1-py2.py3-none-any.whl#sha256=e900810bd542c4db6034af2fcb70a1ea1aa172274d6d6e89ed4f26c8496eca8f (from https://pypi.org/simple/polyply/) 2022-10-03T09:16:14,583 Found link https://files.pythonhosted.org/packages/44/2e/5a1f0589f61f2adf682da196f365578969be49e70bb5c462b804378574b8/polyply-1.2.1.tar.gz#sha256=039ed6a6f92e2f5695976b43699c0e8506bda1541ddd1fedc94d49a250331369 (from https://pypi.org/simple/polyply/), version: 1.2.1 2022-10-03T09:16:14,584 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/8b/5a/54052dbde396df09dd9d81aeb3c5e1b3873d7a81e387f4c45cc3e9a9aaf7/polyply-1.3.0-py2.py3-none-any.whl#sha256=f72e0c5ca2cad71a3d2f83477d53e36e839f2f794fbb8513bfd16ce1c14227bb (from https://pypi.org/simple/polyply/) 2022-10-03T09:16:14,585 Found link https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz#sha256=f7019281f082c2a247a5a9313dfca03525923c0c06ec03da4b798638cf2af846 (from https://pypi.org/simple/polyply/), version: 1.3.0 2022-10-03T09:16:14,585 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/5b/42/27a59dec4af56f87c3f93920f6021fb31bb9885d2bc7b3e0f9efe883db01/polyply-1.3.1-py2.py3-none-any.whl#sha256=cc0bf907d98db2d652c04805faef45ff62af522cafc1728b8e795ffb463a1b9e (from https://pypi.org/simple/polyply/) 2022-10-03T09:16:14,586 Found link https://files.pythonhosted.org/packages/08/9b/e76f6659ecf63a5d1f11951ce10b248e4c13669aa8ca03fa9e766f21043b/polyply-1.3.1.tar.gz#sha256=16d82e58e71aac88668220beafe430d0b627709e5a8734af9136132cf4595786 (from https://pypi.org/simple/polyply/), version: 1.3.1 2022-10-03T09:16:14,587 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/0f/cb/16b130082c96795791589934b925937530f9c909c544bf295069135003ca/polyply-1.4.0-py2.py3-none-any.whl#sha256=410a09d7ea9631e582c48264847b89f1459670604568557382ae3b059aa498c6 (from https://pypi.org/simple/polyply/) 2022-10-03T09:16:14,587 Found link https://files.pythonhosted.org/packages/72/da/305294dabd9e3a6123018e8adabe7312ea474b0bbf45eb38c30ac96dcdd4/polyply-1.4.0.tar.gz#sha256=455ec71daa07930e5e2fc2a6fa387104105cd728ae15424cf0776a0b0c8f81df (from https://pypi.org/simple/polyply/), version: 1.4.0 2022-10-03T09:16:14,588 Fetching project page and analyzing links: https://www.piwheels.org/simple/polyply/ 2022-10-03T09:16:14,589 Getting page https://www.piwheels.org/simple/polyply/ 2022-10-03T09:16:14,591 Found index url https://www.piwheels.org/simple 2022-10-03T09:16:15,018 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.1-py2.py3-none-any.whl#sha256=b0b3e19fb070225282deb01f6a7ecb6ee818e5ea427d82671643c3cdfe77d223 (from https://www.piwheels.org/simple/polyply/) 2022-10-03T09:16:15,019 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.0-py2.py3-none-any.whl#sha256=6ba24bf0e5816a4bbca620557f3da0c72223845d343dc2aef98b62c4d82dd3bb (from https://www.piwheels.org/simple/polyply/) 2022-10-03T09:16:15,019 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.1-py2.py3-none-any.whl#sha256=477478cf7f4d673782ed4e85fc97d32eaf0f5c1d5aa5af96d33ef496c1325007 (from https://www.piwheels.org/simple/polyply/) 2022-10-03T09:16:15,020 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.0-py2.py3-none-any.whl#sha256=672ceb8c03418bf79a0c31ab912adb5e0767df776a7d5d867a516ea0652e6362 (from https://www.piwheels.org/simple/polyply/) 2022-10-03T09:16:15,020 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://www.piwheels.org/simple/polyply/) 2022-10-03T09:16:15,021 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.0.0-py2.py3-none-any.whl#sha256=e44f0272c9e93e8e46bed997db28dd0205d709cebd40090747e2758358abdb8c (from https://www.piwheels.org/simple/polyply/) 2022-10-03T09:16:15,021 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-0.0.1-py2.py3-none-any.whl#sha256=165e22dfd4680f03fe8b6a49a8d3f38918049d263c57c0e82b5fddb4bc8b294b (from https://www.piwheels.org/simple/polyply/) 2022-10-03T09:16:15,022 Skipping link: not a file: https://www.piwheels.org/simple/polyply/ 2022-10-03T09:16:15,022 Skipping link: not a file: https://pypi.org/simple/polyply/ 2022-10-03T09:16:15,059 Given no hashes to check 1 links for project 'polyply': discarding no candidates 2022-10-03T09:16:15,090 Collecting polyply==1.4.0 2022-10-03T09:16:15,095 Created temporary directory: /tmp/pip-unpack-fck1mx7g 2022-10-03T09:16:15,659 Downloading polyply-1.4.0.tar.gz (529 kB) 2022-10-03T09:16:17,087 Added polyply==1.4.0 from https://files.pythonhosted.org/packages/72/da/305294dabd9e3a6123018e8adabe7312ea474b0bbf45eb38c30ac96dcdd4/polyply-1.4.0.tar.gz#sha256=455ec71daa07930e5e2fc2a6fa387104105cd728ae15424cf0776a0b0c8f81df to build tracker '/tmp/pip-build-tracker-w6mg1d1v' 2022-10-03T09:16:17,097 Created temporary directory: /tmp/pip-build-env-mi1xo9sn 2022-10-03T09:16:17,111 Created temporary directory: /tmp/pip-standalone-pip-8edgw5tj 2022-10-03T09:16:19,358 Installing build dependencies: started 2022-10-03T09:16:19,361 Running command pip subprocess to install build dependencies 2022-10-03T09:16:29,019 Using pip 22.1.2 from /tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip (python 3.7) 2022-10-03T09:16:31,034 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-03T09:16:31,934 Collecting wheel 2022-10-03T09:16:31,970 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-10-03T09:16:36,093 Collecting setuptools>=30.3.0 2022-10-03T09:16:36,372 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.4.1-py3-none-any.whl (1.2 MB) 2022-10-03T09:16:37,341 Collecting pbr 2022-10-03T09:16:37,441 Using cached https://www.piwheels.org/simple/pbr/pbr-5.10.0-py2.py3-none-any.whl (112 kB) 2022-10-03T09:16:51,812 Installing collected packages: wheel, setuptools, pbr 2022-10-03T09:16:52,076 Creating /tmp/pip-build-env-mi1xo9sn/overlay/bin 2022-10-03T09:16:52,081 changing mode of /tmp/pip-build-env-mi1xo9sn/overlay/bin/wheel to 755 2022-10-03T09:16:57,604 changing mode of /tmp/pip-build-env-mi1xo9sn/overlay/bin/pbr to 755 2022-10-03T09:16:57,639 Successfully installed pbr-5.10.0 setuptools-65.4.1 wheel-0.37.1 2022-10-03T09:16:57,882 --- Logging error --- 2022-10-03T09:16:57,883 Traceback (most recent call last): 2022-10-03T09:16:57,883 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-10-03T09:16:57,884 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-10-03T09:16:57,884 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-10-03T09:16:57,884 extend(render(renderable, render_options)) 2022-10-03T09:16:57,885 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-10-03T09:16:57,885 for render_output in iter_render: 2022-10-03T09:16:57,885 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-10-03T09:16:57,886 for line in lines: 2022-10-03T09:16:57,886 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-10-03T09:16:57,886 for segment in segments: 2022-10-03T09:16:57,887 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-10-03T09:16:57,887 renderable = rich_cast(renderable) 2022-10-03T09:16:57,887 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-10-03T09:16:57,888 renderable = cast_method() 2022-10-03T09:16:57,888 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-10-03T09:16:57,888 pip_cmd = get_best_invocation_for_this_pip() 2022-10-03T09:16:57,889 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 60, in get_best_invocation_for_this_pip 2022-10-03T09:16:57,889 os.path.join(binary_prefix, exe_name), 2022-10-03T09:16:57,889 File "/usr/lib/python3.7/genericpath.py", line 97, in samefile 2022-10-03T09:16:57,890 s2 = os.stat(f2) 2022-10-03T09:16:57,890 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.7' 2022-10-03T09:16:57,890 Call stack: 2022-10-03T09:16:57,891 File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main 2022-10-03T09:16:57,891 "__main__", mod_spec) 2022-10-03T09:16:57,891 File "/usr/lib/python3.7/runpy.py", line 85, in _run_code 2022-10-03T09:16:57,892 exec(code, run_globals) 2022-10-03T09:16:57,892 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/__main__.py", line 31, in 2022-10-03T09:16:57,892 sys.exit(_main()) 2022-10-03T09:16:57,893 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-10-03T09:16:57,893 return command.main(cmd_args) 2022-10-03T09:16:57,893 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-10-03T09:16:57,894 return self._main(args) 2022-10-03T09:16:57,894 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-10-03T09:16:57,894 self.handle_pip_version_check(options) 2022-10-03T09:16:57,895 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-10-03T09:16:57,895 pip_self_version_check(session, options) 2022-10-03T09:16:57,895 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-10-03T09:16:57,895 logger.info("[present-rich] %s", upgrade_prompt) 2022-10-03T09:16:57,896 File "/usr/lib/python3.7/logging/__init__.py", line 1383, in info 2022-10-03T09:16:57,896 self._log(INFO, msg, args, **kwargs) 2022-10-03T09:16:57,896 File "/usr/lib/python3.7/logging/__init__.py", line 1519, in _log 2022-10-03T09:16:57,897 self.handle(record) 2022-10-03T09:16:57,897 File "/usr/lib/python3.7/logging/__init__.py", line 1529, in handle 2022-10-03T09:16:57,897 self.callHandlers(record) 2022-10-03T09:16:57,898 File "/usr/lib/python3.7/logging/__init__.py", line 1591, in callHandlers 2022-10-03T09:16:57,898 hdlr.handle(record) 2022-10-03T09:16:57,898 File "/usr/lib/python3.7/logging/__init__.py", line 905, in handle 2022-10-03T09:16:57,899 self.emit(record) 2022-10-03T09:16:57,899 File "/tmp/pip-standalone-pip-8edgw5tj/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-10-03T09:16:57,899 self.handleError(record) 2022-10-03T09:16:57,900 Message: '[present-rich] %s' 2022-10-03T09:16:57,900 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-10-03T09:16:58,401 Installing build dependencies: finished with status 'done' 2022-10-03T09:16:58,444 Getting requirements to build wheel: started 2022-10-03T09:16:58,446 Running command Getting requirements to build wheel 2022-10-03T09:17:00,591 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-10-03T09:17:00,592 % (opt, underscore_opt) 2022-10-03T09:17:00,593 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-10-03T09:17:00,593 % (opt, underscore_opt) 2022-10-03T09:17:00,594 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-10-03T09:17:00,594 % (opt, underscore_opt) 2022-10-03T09:17:00,594 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-10-03T09:17:00,595 % (opt, underscore_opt) 2022-10-03T09:17:00,794 Getting requirements to build wheel: finished with status 'done' 2022-10-03T09:17:00,822 Created temporary directory: /tmp/pip-modern-metadata-ehmpswqe 2022-10-03T09:17:00,828 Preparing metadata (pyproject.toml): started 2022-10-03T09:17:00,830 Running command Preparing metadata (pyproject.toml) 2022-10-03T09:17:07,559 running dist_info 2022-10-03T09:17:07,568 creating /tmp/pip-modern-metadata-ehmpswqe/polyply.egg-info 2022-10-03T09:17:08,186 writing /tmp/pip-modern-metadata-ehmpswqe/polyply.egg-info/PKG-INFO 2022-10-03T09:17:08,775 writing dependency_links to /tmp/pip-modern-metadata-ehmpswqe/polyply.egg-info/dependency_links.txt 2022-10-03T09:17:11,757 writing requirements to /tmp/pip-modern-metadata-ehmpswqe/polyply.egg-info/requires.txt 2022-10-03T09:17:12,343 writing top-level names to /tmp/pip-modern-metadata-ehmpswqe/polyply.egg-info/top_level.txt 2022-10-03T09:17:12,410 [pbr] Processing SOURCES.txt 2022-10-03T09:17:12,411 writing manifest file '/tmp/pip-modern-metadata-ehmpswqe/polyply.egg-info/SOURCES.txt' 2022-10-03T09:17:13,402 /usr/local/lib/python3.7/dist-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-10-03T09:17:13,403 EasyInstallDeprecationWarning, 2022-10-03T09:17:13,403 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-10-03T09:17:13,403 setuptools.SetuptoolsDeprecationWarning, 2022-10-03T09:17:13,404 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-10-03T09:17:13,404 % (opt, underscore_opt) 2022-10-03T09:17:13,404 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-10-03T09:17:13,405 % (opt, underscore_opt) 2022-10-03T09:17:13,405 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-10-03T09:17:13,405 % (opt, underscore_opt) 2022-10-03T09:17:13,406 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-10-03T09:17:13,406 % (opt, underscore_opt) 2022-10-03T09:17:13,406 warning: no previously-included files found matching '.gitignore' 2022-10-03T09:17:13,407 warning: no previously-included files found matching '.gitreview' 2022-10-03T09:17:13,407 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2022-10-03T09:17:13,531 adding license file 'LICENSE' 2022-10-03T09:17:13,531 adding license file 'AUTHORS' 2022-10-03T09:17:13,555 writing manifest file '/tmp/pip-modern-metadata-ehmpswqe/polyply.egg-info/SOURCES.txt' 2022-10-03T09:17:13,560 creating '/tmp/pip-modern-metadata-ehmpswqe/polyply-1.4.0.dist-info' 2022-10-03T09:17:13,744 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-10-03T09:17:13,797 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-03T09:17:13,799 adding license file "AUTHORS" (matched pattern "AUTHORS*") 2022-10-03T09:17:14,067 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-03T09:17:14,082 Source in /tmp/pip-wheel-azhowt39/polyply_fefa86a656694a6b884c8f6bfada1475 has version 1.4.0, which satisfies requirement polyply==1.4.0 from https://files.pythonhosted.org/packages/72/da/305294dabd9e3a6123018e8adabe7312ea474b0bbf45eb38c30ac96dcdd4/polyply-1.4.0.tar.gz#sha256=455ec71daa07930e5e2fc2a6fa387104105cd728ae15424cf0776a0b0c8f81df 2022-10-03T09:17:14,085 Removed polyply==1.4.0 from https://files.pythonhosted.org/packages/72/da/305294dabd9e3a6123018e8adabe7312ea474b0bbf45eb38c30ac96dcdd4/polyply-1.4.0.tar.gz#sha256=455ec71daa07930e5e2fc2a6fa387104105cd728ae15424cf0776a0b0c8f81df from build tracker '/tmp/pip-build-tracker-w6mg1d1v' 2022-10-03T09:17:14,095 Created temporary directory: /tmp/pip-unpack-e7bhh4xg 2022-10-03T09:17:14,096 Building wheels for collected packages: polyply 2022-10-03T09:17:14,105 Created temporary directory: /tmp/pip-wheel-b7q7a8yv 2022-10-03T09:17:14,106 Destination directory: /tmp/pip-wheel-b7q7a8yv 2022-10-03T09:17:14,111 Building wheel for polyply (pyproject.toml): started 2022-10-03T09:17:14,113 Running command Building wheel for polyply (pyproject.toml) 2022-10-03T09:17:20,306 running bdist_wheel 2022-10-03T09:17:20,380 /usr/local/lib/python3.7/dist-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-10-03T09:17:20,380 EasyInstallDeprecationWarning, 2022-10-03T09:17:20,381 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-10-03T09:17:20,381 % (opt, underscore_opt) 2022-10-03T09:17:20,381 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-10-03T09:17:20,382 % (opt, underscore_opt) 2022-10-03T09:17:20,382 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-10-03T09:17:20,383 % (opt, underscore_opt) 2022-10-03T09:17:20,383 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-10-03T09:17:20,383 % (opt, underscore_opt) 2022-10-03T09:17:20,384 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-10-03T09:17:21,617 running build 2022-10-03T09:17:21,618 running build_py 2022-10-03T09:17:22,248 creating build 2022-10-03T09:17:22,248 creating build/lib 2022-10-03T09:17:22,249 creating build/lib/polyply 2022-10-03T09:17:22,251 copying polyply/__init__.py -> build/lib/polyply 2022-10-03T09:17:22,259 creating build/lib/polyply/src 2022-10-03T09:17:22,260 copying polyply/src/gen_seq.py -> build/lib/polyply/src 2022-10-03T09:17:22,264 copying polyply/src/processor.py -> build/lib/polyply/src 2022-10-03T09:17:22,268 copying polyply/src/linalg_functions.py -> build/lib/polyply/src 2022-10-03T09:17:22,271 copying polyply/src/graph_utils.py -> build/lib/polyply/src 2022-10-03T09:17:22,275 copying polyply/src/ff_parser_sub.py -> build/lib/polyply/src 2022-10-03T09:17:22,278 copying polyply/src/map_to_molecule.py -> build/lib/polyply/src 2022-10-03T09:17:22,282 copying polyply/src/topology.py -> build/lib/polyply/src 2022-10-03T09:17:22,287 copying polyply/src/annotate_ligands.py -> build/lib/polyply/src 2022-10-03T09:17:22,291 copying polyply/src/load_library.py -> build/lib/polyply/src 2022-10-03T09:17:22,294 copying polyply/src/persistence.py -> build/lib/polyply/src 2022-10-03T09:17:22,297 copying polyply/src/build_file_parser.py -> build/lib/polyply/src 2022-10-03T09:17:22,301 copying polyply/src/random_walk.py -> build/lib/polyply/src 2022-10-03T09:17:22,305 copying polyply/src/gen_coords.py -> build/lib/polyply/src 2022-10-03T09:17:22,309 copying polyply/src/meta_molecule.py -> build/lib/polyply/src 2022-10-03T09:17:22,313 copying polyply/src/apply_modifications.py -> build/lib/polyply/src 2022-10-03T09:17:22,316 copying polyply/src/restraints.py -> build/lib/polyply/src 2022-10-03T09:17:22,320 copying polyply/src/polyply_parser.py -> build/lib/polyply/src 2022-10-03T09:17:22,323 copying polyply/src/gen_itp.py -> build/lib/polyply/src 2022-10-03T09:17:22,327 copying polyply/src/simple_seq_parsers.py -> build/lib/polyply/src 2022-10-03T09:17:22,331 copying polyply/src/build_system.py -> build/lib/polyply/src 2022-10-03T09:17:22,335 copying polyply/src/generate_templates.py -> build/lib/polyply/src 2022-10-03T09:17:22,339 copying polyply/src/minimizer.py -> build/lib/polyply/src 2022-10-03T09:17:22,342 copying polyply/src/virtual_site_builder.py -> build/lib/polyply/src 2022-10-03T09:17:22,346 copying polyply/src/apply_links.py -> build/lib/polyply/src 2022-10-03T09:17:22,350 copying polyply/src/__init__.py -> build/lib/polyply/src 2022-10-03T09:17:22,353 copying polyply/src/top_parser.py -> build/lib/polyply/src 2022-10-03T09:17:22,358 copying polyply/src/check_residue_equivalence.py -> build/lib/polyply/src 2022-10-03T09:17:22,361 copying polyply/src/logging.py -> build/lib/polyply/src 2022-10-03T09:17:22,364 copying polyply/src/backmap.py -> build/lib/polyply/src 2022-10-03T09:17:22,367 copying polyply/src/nonbond_engine.py -> build/lib/polyply/src 2022-10-03T09:17:22,373 creating build/lib/polyply/data 2022-10-03T09:17:22,374 copying polyply/data/__init__.py -> build/lib/polyply/data 2022-10-03T09:17:22,381 creating build/lib/polyply/tests 2022-10-03T09:17:22,383 copying polyply/tests/test_random_walk.py -> build/lib/polyply/tests 2022-10-03T09:17:22,388 copying polyply/tests/test_logging.py -> build/lib/polyply/tests 2022-10-03T09:17:22,391 copying polyply/tests/test_itp_files.py -> build/lib/polyply/tests 2022-10-03T09:17:22,395 copying polyply/tests/test_build_system.py -> build/lib/polyply/tests 2022-10-03T09:17:22,399 copying polyply/tests/test_simple_seq_parsers.py -> build/lib/polyply/tests 2022-10-03T09:17:22,402 copying polyply/tests/test_build_file_parser.py -> build/lib/polyply/tests 2022-10-03T09:17:22,406 copying polyply/tests/test_lib_files.py -> build/lib/polyply/tests 2022-10-03T09:17:22,410 copying polyply/tests/test_residue_check.py -> build/lib/polyply/tests 2022-10-03T09:17:22,414 copying polyply/tests/test_gen_coords_logic.py -> build/lib/polyply/tests 2022-10-03T09:17:22,417 copying polyply/tests/test_ff_parser.py -> build/lib/polyply/tests 2022-10-03T09:17:22,420 copying polyply/tests/test_generate_templates.py -> build/lib/polyply/tests 2022-10-03T09:17:22,424 copying polyply/tests/test_polyply_input.py -> build/lib/polyply/tests 2022-10-03T09:17:22,427 copying polyply/tests/test_optimize_geometry.py -> build/lib/polyply/tests 2022-10-03T09:17:22,432 copying polyply/tests/test_restraints.py -> build/lib/polyply/tests 2022-10-03T09:17:22,435 copying polyply/tests/test_graph_utils.py -> build/lib/polyply/tests 2022-10-03T09:17:22,438 copying polyply/tests/test_linalg.py -> build/lib/polyply/tests 2022-10-03T09:17:22,442 copying polyply/tests/test_persistence.py -> build/lib/polyply/tests 2022-10-03T09:17:22,446 copying polyply/tests/test_nb_engine.py -> build/lib/polyply/tests 2022-10-03T09:17:22,450 copying polyply/tests/test_load_library.py -> build/lib/polyply/tests 2022-10-03T09:17:22,453 copying polyply/tests/example_fixtures.py -> build/lib/polyply/tests 2022-10-03T09:17:22,456 copying polyply/tests/test_meta_molecule.py -> build/lib/polyply/tests 2022-10-03T09:17:22,460 copying polyply/tests/test_gen_seq.py -> build/lib/polyply/tests 2022-10-03T09:17:22,464 copying polyply/tests/test_topology.py -> build/lib/polyply/tests 2022-10-03T09:17:22,468 copying polyply/tests/test_vs_builder.py -> build/lib/polyply/tests 2022-10-03T09:17:22,471 copying polyply/tests/test_backmap.py -> build/lib/polyply/tests 2022-10-03T09:17:22,475 copying polyply/tests/test_apply_links.py -> build/lib/polyply/tests 2022-10-03T09:17:22,479 copying polyply/tests/__init__.py -> build/lib/polyply/tests 2022-10-03T09:17:22,482 copying polyply/tests/test_gen_coords.py -> build/lib/polyply/tests 2022-10-03T09:17:22,486 copying polyply/tests/test_gen_params.py -> build/lib/polyply/tests 2022-10-03T09:17:22,489 copying polyply/tests/test_annotate_lingads.py -> build/lib/polyply/tests 2022-10-03T09:17:22,493 copying polyply/tests/test_top_parser.py -> build/lib/polyply/tests 2022-10-03T09:17:22,497 copying polyply/tests/test_map_to_molecule.py -> build/lib/polyply/tests 2022-10-03T09:17:22,501 running egg_info 2022-10-03T09:17:23,132 writing polyply.egg-info/PKG-INFO 2022-10-03T09:17:23,722 writing dependency_links to polyply.egg-info/dependency_links.txt 2022-10-03T09:17:26,663 writing requirements to polyply.egg-info/requires.txt 2022-10-03T09:17:27,255 writing top-level names to polyply.egg-info/top_level.txt 2022-10-03T09:17:27,321 [pbr] Reusing existing SOURCES.txt 2022-10-03T09:17:27,408 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,409 ############################ 2022-10-03T09:17:27,410 # Package would be ignored # 2022-10-03T09:17:27,410 ############################ 2022-10-03T09:17:27,410 Python recognizes 'polyply.data.gromos53A6' as an importable package, however it is 2022-10-03T09:17:27,411 included in the distribution as "data". 2022-10-03T09:17:27,411 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,411 therefore is considered deprecated). 2022-10-03T09:17:27,412 Please make sure that 'polyply.data.gromos53A6' is included as a package by using 2022-10-03T09:17:27,412 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,413 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,413 documentation page. 2022-10-03T09:17:27,414 !! 2022-10-03T09:17:27,415 check.warn(importable) 2022-10-03T09:17:27,415 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,416 ############################ 2022-10-03T09:17:27,416 # Package would be ignored # 2022-10-03T09:17:27,416 ############################ 2022-10-03T09:17:27,417 Python recognizes 'polyply.data.martini2' as an importable package, however it is 2022-10-03T09:17:27,417 included in the distribution as "data". 2022-10-03T09:17:27,417 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,418 therefore is considered deprecated). 2022-10-03T09:17:27,418 Please make sure that 'polyply.data.martini2' is included as a package by using 2022-10-03T09:17:27,419 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,419 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,419 documentation page. 2022-10-03T09:17:27,420 !! 2022-10-03T09:17:27,421 check.warn(importable) 2022-10-03T09:17:27,421 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,422 ############################ 2022-10-03T09:17:27,422 # Package would be ignored # 2022-10-03T09:17:27,423 ############################ 2022-10-03T09:17:27,423 Python recognizes 'polyply.data.martini3' as an importable package, however it is 2022-10-03T09:17:27,423 included in the distribution as "data". 2022-10-03T09:17:27,424 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,424 therefore is considered deprecated). 2022-10-03T09:17:27,424 Please make sure that 'polyply.data.martini3' is included as a package by using 2022-10-03T09:17:27,425 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,425 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,426 documentation page. 2022-10-03T09:17:27,427 !! 2022-10-03T09:17:27,427 check.warn(importable) 2022-10-03T09:17:27,428 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,429 ############################ 2022-10-03T09:17:27,429 # Package would be ignored # 2022-10-03T09:17:27,429 ############################ 2022-10-03T09:17:27,429 Python recognizes 'polyply.data.martini3_beta' as an importable package, however it is 2022-10-03T09:17:27,430 included in the distribution as "data". 2022-10-03T09:17:27,430 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,430 therefore is considered deprecated). 2022-10-03T09:17:27,431 Please make sure that 'polyply.data.martini3_beta' is included as a package by using 2022-10-03T09:17:27,431 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,432 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,432 documentation page. 2022-10-03T09:17:27,433 !! 2022-10-03T09:17:27,434 check.warn(importable) 2022-10-03T09:17:27,434 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,435 ############################ 2022-10-03T09:17:27,435 # Package would be ignored # 2022-10-03T09:17:27,435 ############################ 2022-10-03T09:17:27,436 Python recognizes 'polyply.data.oplsaaLigParGen' as an importable package, however it is 2022-10-03T09:17:27,436 included in the distribution as "data". 2022-10-03T09:17:27,436 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,437 therefore is considered deprecated). 2022-10-03T09:17:27,437 Please make sure that 'polyply.data.oplsaaLigParGen' is included as a package by using 2022-10-03T09:17:27,437 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,438 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,438 documentation page. 2022-10-03T09:17:27,439 !! 2022-10-03T09:17:27,440 check.warn(importable) 2022-10-03T09:17:27,440 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,441 ############################ 2022-10-03T09:17:27,441 # Package would be ignored # 2022-10-03T09:17:27,441 ############################ 2022-10-03T09:17:27,442 Python recognizes 'polyply.data.parmbsc1' as an importable package, however it is 2022-10-03T09:17:27,442 included in the distribution as "data". 2022-10-03T09:17:27,442 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,443 therefore is considered deprecated). 2022-10-03T09:17:27,443 Please make sure that 'polyply.data.parmbsc1' is included as a package by using 2022-10-03T09:17:27,444 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,444 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,444 documentation page. 2022-10-03T09:17:27,445 !! 2022-10-03T09:17:27,446 check.warn(importable) 2022-10-03T09:17:27,446 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,447 ############################ 2022-10-03T09:17:27,447 # Package would be ignored # 2022-10-03T09:17:27,448 ############################ 2022-10-03T09:17:27,448 Python recognizes 'polyply.tests.test_data.ff' as an importable package, however it is 2022-10-03T09:17:27,448 included in the distribution as "data". 2022-10-03T09:17:27,448 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,449 therefore is considered deprecated). 2022-10-03T09:17:27,449 Please make sure that 'polyply.tests.test_data.ff' is included as a package by using 2022-10-03T09:17:27,450 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,450 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,451 documentation page. 2022-10-03T09:17:27,451 !! 2022-10-03T09:17:27,452 check.warn(importable) 2022-10-03T09:17:27,452 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,453 ############################ 2022-10-03T09:17:27,453 # Package would be ignored # 2022-10-03T09:17:27,454 ############################ 2022-10-03T09:17:27,454 Python recognizes 'polyply.tests.test_data.gen_params.input' as an importable package, however it is 2022-10-03T09:17:27,454 included in the distribution as "data". 2022-10-03T09:17:27,455 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,455 therefore is considered deprecated). 2022-10-03T09:17:27,455 Please make sure that 'polyply.tests.test_data.gen_params.input' is included as a package by using 2022-10-03T09:17:27,456 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,456 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,457 documentation page. 2022-10-03T09:17:27,457 !! 2022-10-03T09:17:27,458 check.warn(importable) 2022-10-03T09:17:27,458 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,459 ############################ 2022-10-03T09:17:27,459 # Package would be ignored # 2022-10-03T09:17:27,460 ############################ 2022-10-03T09:17:27,460 Python recognizes 'polyply.tests.test_data.gen_params.output' as an importable package, however it is 2022-10-03T09:17:27,460 included in the distribution as "data". 2022-10-03T09:17:27,461 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,461 therefore is considered deprecated). 2022-10-03T09:17:27,461 Please make sure that 'polyply.tests.test_data.gen_params.output' is included as a package by using 2022-10-03T09:17:27,462 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,462 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,463 documentation page. 2022-10-03T09:17:27,463 !! 2022-10-03T09:17:27,464 check.warn(importable) 2022-10-03T09:17:27,464 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,465 ############################ 2022-10-03T09:17:27,465 # Package would be ignored # 2022-10-03T09:17:27,466 ############################ 2022-10-03T09:17:27,466 Python recognizes 'polyply.tests.test_data.gen_params.ref' as an importable package, however it is 2022-10-03T09:17:27,466 included in the distribution as "data". 2022-10-03T09:17:27,467 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,467 therefore is considered deprecated). 2022-10-03T09:17:27,467 Please make sure that 'polyply.tests.test_data.gen_params.ref' is included as a package by using 2022-10-03T09:17:27,468 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,468 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,469 documentation page. 2022-10-03T09:17:27,469 !! 2022-10-03T09:17:27,470 check.warn(importable) 2022-10-03T09:17:27,470 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,471 ############################ 2022-10-03T09:17:27,471 # Package would be ignored # 2022-10-03T09:17:27,472 ############################ 2022-10-03T09:17:27,472 Python recognizes 'polyply.tests.test_data.gen_seq.input' as an importable package, however it is 2022-10-03T09:17:27,472 included in the distribution as "data". 2022-10-03T09:17:27,473 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,473 therefore is considered deprecated). 2022-10-03T09:17:27,474 Please make sure that 'polyply.tests.test_data.gen_seq.input' is included as a package by using 2022-10-03T09:17:27,474 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,475 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,475 documentation page. 2022-10-03T09:17:27,476 !! 2022-10-03T09:17:27,476 check.warn(importable) 2022-10-03T09:17:27,477 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,477 ############################ 2022-10-03T09:17:27,478 # Package would be ignored # 2022-10-03T09:17:27,478 ############################ 2022-10-03T09:17:27,478 Python recognizes 'polyply.tests.test_data.gen_seq.output' as an importable package, however it is 2022-10-03T09:17:27,479 included in the distribution as "data". 2022-10-03T09:17:27,479 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,479 therefore is considered deprecated). 2022-10-03T09:17:27,480 Please make sure that 'polyply.tests.test_data.gen_seq.output' is included as a package by using 2022-10-03T09:17:27,480 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,481 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,481 documentation page. 2022-10-03T09:17:27,482 !! 2022-10-03T09:17:27,482 check.warn(importable) 2022-10-03T09:17:27,483 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,484 ############################ 2022-10-03T09:17:27,484 # Package would be ignored # 2022-10-03T09:17:27,484 ############################ 2022-10-03T09:17:27,484 Python recognizes 'polyply.tests.test_data.gen_seq.ref' as an importable package, however it is 2022-10-03T09:17:27,485 included in the distribution as "data". 2022-10-03T09:17:27,485 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,485 therefore is considered deprecated). 2022-10-03T09:17:27,486 Please make sure that 'polyply.tests.test_data.gen_seq.ref' is included as a package by using 2022-10-03T09:17:27,486 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,487 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,487 documentation page. 2022-10-03T09:17:27,488 !! 2022-10-03T09:17:27,488 check.warn(importable) 2022-10-03T09:17:27,489 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,489 ############################ 2022-10-03T09:17:27,490 # Package would be ignored # 2022-10-03T09:17:27,490 ############################ 2022-10-03T09:17:27,490 Python recognizes 'polyply.tests.test_data.itp' as an importable package, however it is 2022-10-03T09:17:27,491 included in the distribution as "data". 2022-10-03T09:17:27,491 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,491 therefore is considered deprecated). 2022-10-03T09:17:27,492 Please make sure that 'polyply.tests.test_data.itp' is included as a package by using 2022-10-03T09:17:27,492 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,493 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,493 documentation page. 2022-10-03T09:17:27,494 !! 2022-10-03T09:17:27,494 check.warn(importable) 2022-10-03T09:17:27,495 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,495 ############################ 2022-10-03T09:17:27,496 # Package would be ignored # 2022-10-03T09:17:27,496 ############################ 2022-10-03T09:17:27,496 Python recognizes 'polyply.tests.test_data.json' as an importable package, however it is 2022-10-03T09:17:27,497 included in the distribution as "data". 2022-10-03T09:17:27,497 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,497 therefore is considered deprecated). 2022-10-03T09:17:27,498 Please make sure that 'polyply.tests.test_data.json' is included as a package by using 2022-10-03T09:17:27,498 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,499 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,499 documentation page. 2022-10-03T09:17:27,500 !! 2022-10-03T09:17:27,500 check.warn(importable) 2022-10-03T09:17:27,501 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,501 ############################ 2022-10-03T09:17:27,502 # Package would be ignored # 2022-10-03T09:17:27,502 ############################ 2022-10-03T09:17:27,502 Python recognizes 'polyply.tests.test_data.library_tests' as an importable package, however it is 2022-10-03T09:17:27,502 included in the distribution as "data". 2022-10-03T09:17:27,503 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,503 therefore is considered deprecated). 2022-10-03T09:17:27,504 Please make sure that 'polyply.tests.test_data.library_tests' is included as a package by using 2022-10-03T09:17:27,504 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,505 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,505 documentation page. 2022-10-03T09:17:27,506 !! 2022-10-03T09:17:27,506 check.warn(importable) 2022-10-03T09:17:27,506 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,507 ############################ 2022-10-03T09:17:27,508 # Package would be ignored # 2022-10-03T09:17:27,508 ############################ 2022-10-03T09:17:27,508 Python recognizes 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' as an importable package, however it is 2022-10-03T09:17:27,508 included in the distribution as "data". 2022-10-03T09:17:27,509 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,509 therefore is considered deprecated). 2022-10-03T09:17:27,510 Please make sure that 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' is included as a package by using 2022-10-03T09:17:27,510 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,510 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,511 documentation page. 2022-10-03T09:17:27,512 !! 2022-10-03T09:17:27,512 check.warn(importable) 2022-10-03T09:17:27,512 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,513 ############################ 2022-10-03T09:17:27,514 # Package would be ignored # 2022-10-03T09:17:27,514 ############################ 2022-10-03T09:17:27,514 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL' as an importable package, however it is 2022-10-03T09:17:27,515 included in the distribution as "data". 2022-10-03T09:17:27,515 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,515 therefore is considered deprecated). 2022-10-03T09:17:27,516 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL' is included as a package by using 2022-10-03T09:17:27,516 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,517 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,517 documentation page. 2022-10-03T09:17:27,518 !! 2022-10-03T09:17:27,518 check.warn(importable) 2022-10-03T09:17:27,519 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,519 ############################ 2022-10-03T09:17:27,520 # Package would be ignored # 2022-10-03T09:17:27,520 ############################ 2022-10-03T09:17:27,520 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' as an importable package, however it is 2022-10-03T09:17:27,520 included in the distribution as "data". 2022-10-03T09:17:27,521 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,521 therefore is considered deprecated). 2022-10-03T09:17:27,522 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' is included as a package by using 2022-10-03T09:17:27,522 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,522 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,523 documentation page. 2022-10-03T09:17:27,524 !! 2022-10-03T09:17:27,524 check.warn(importable) 2022-10-03T09:17:27,524 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,525 ############################ 2022-10-03T09:17:27,526 # Package would be ignored # 2022-10-03T09:17:27,526 ############################ 2022-10-03T09:17:27,526 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' as an importable package, however it is 2022-10-03T09:17:27,526 included in the distribution as "data". 2022-10-03T09:17:27,527 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,527 therefore is considered deprecated). 2022-10-03T09:17:27,528 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' is included as a package by using 2022-10-03T09:17:27,528 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,528 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,529 documentation page. 2022-10-03T09:17:27,530 !! 2022-10-03T09:17:27,530 check.warn(importable) 2022-10-03T09:17:27,530 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,531 ############################ 2022-10-03T09:17:27,532 # Package would be ignored # 2022-10-03T09:17:27,532 ############################ 2022-10-03T09:17:27,532 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE' as an importable package, however it is 2022-10-03T09:17:27,532 included in the distribution as "data". 2022-10-03T09:17:27,533 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,533 therefore is considered deprecated). 2022-10-03T09:17:27,534 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE' is included as a package by using 2022-10-03T09:17:27,534 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,535 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,535 documentation page. 2022-10-03T09:17:27,536 !! 2022-10-03T09:17:27,536 check.warn(importable) 2022-10-03T09:17:27,537 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,538 ############################ 2022-10-03T09:17:27,538 # Package would be ignored # 2022-10-03T09:17:27,538 ############################ 2022-10-03T09:17:27,539 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' as an importable package, however it is 2022-10-03T09:17:27,539 included in the distribution as "data". 2022-10-03T09:17:27,539 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,539 therefore is considered deprecated). 2022-10-03T09:17:27,540 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' is included as a package by using 2022-10-03T09:17:27,540 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,541 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,541 documentation page. 2022-10-03T09:17:27,542 !! 2022-10-03T09:17:27,542 check.warn(importable) 2022-10-03T09:17:27,543 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,544 ############################ 2022-10-03T09:17:27,544 # Package would be ignored # 2022-10-03T09:17:27,544 ############################ 2022-10-03T09:17:27,545 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PS.polyply' as an importable package, however it is 2022-10-03T09:17:27,545 included in the distribution as "data". 2022-10-03T09:17:27,545 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,545 therefore is considered deprecated). 2022-10-03T09:17:27,546 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PS.polyply' is included as a package by using 2022-10-03T09:17:27,546 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,547 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,547 documentation page. 2022-10-03T09:17:27,548 !! 2022-10-03T09:17:27,548 check.warn(importable) 2022-10-03T09:17:27,549 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,550 ############################ 2022-10-03T09:17:27,550 # Package would be ignored # 2022-10-03T09:17:27,550 ############################ 2022-10-03T09:17:27,550 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA' as an importable package, however it is 2022-10-03T09:17:27,551 included in the distribution as "data". 2022-10-03T09:17:27,551 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,551 therefore is considered deprecated). 2022-10-03T09:17:27,552 Please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA' is included as a package by using 2022-10-03T09:17:27,552 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,553 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,553 documentation page. 2022-10-03T09:17:27,554 !! 2022-10-03T09:17:27,554 check.warn(importable) 2022-10-03T09:17:27,555 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,556 ############################ 2022-10-03T09:17:27,556 # Package would be ignored # 2022-10-03T09:17:27,556 ############################ 2022-10-03T09:17:27,556 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' as an importable package, however it is 2022-10-03T09:17:27,557 included in the distribution as "data". 2022-10-03T09:17:27,557 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,557 therefore is considered deprecated). 2022-10-03T09:17:27,558 Please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' is included as a package by using 2022-10-03T09:17:27,558 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,559 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,559 documentation page. 2022-10-03T09:17:27,560 !! 2022-10-03T09:17:27,560 check.warn(importable) 2022-10-03T09:17:27,561 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,562 ############################ 2022-10-03T09:17:27,562 # Package would be ignored # 2022-10-03T09:17:27,562 ############################ 2022-10-03T09:17:27,562 Python recognizes 'polyply.tests.test_data.library_tests.martini3.DEX' as an importable package, however it is 2022-10-03T09:17:27,563 included in the distribution as "data". 2022-10-03T09:17:27,563 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,563 therefore is considered deprecated). 2022-10-03T09:17:27,564 Please make sure that 'polyply.tests.test_data.library_tests.martini3.DEX' is included as a package by using 2022-10-03T09:17:27,564 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,565 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,565 documentation page. 2022-10-03T09:17:27,566 !! 2022-10-03T09:17:27,566 check.warn(importable) 2022-10-03T09:17:27,567 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,568 ############################ 2022-10-03T09:17:27,568 # Package would be ignored # 2022-10-03T09:17:27,568 ############################ 2022-10-03T09:17:27,568 Python recognizes 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' as an importable package, however it is 2022-10-03T09:17:27,569 included in the distribution as "data". 2022-10-03T09:17:27,569 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,569 therefore is considered deprecated). 2022-10-03T09:17:27,570 Please make sure that 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' is included as a package by using 2022-10-03T09:17:27,570 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,571 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,571 documentation page. 2022-10-03T09:17:27,572 !! 2022-10-03T09:17:27,572 check.warn(importable) 2022-10-03T09:17:27,573 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,574 ############################ 2022-10-03T09:17:27,574 # Package would be ignored # 2022-10-03T09:17:27,574 ############################ 2022-10-03T09:17:27,574 Python recognizes 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' as an importable package, however it is 2022-10-03T09:17:27,575 included in the distribution as "data". 2022-10-03T09:17:27,575 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,575 therefore is considered deprecated). 2022-10-03T09:17:27,576 Please make sure that 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' is included as a package by using 2022-10-03T09:17:27,576 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,577 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,577 documentation page. 2022-10-03T09:17:27,578 !! 2022-10-03T09:17:27,578 check.warn(importable) 2022-10-03T09:17:27,579 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,580 ############################ 2022-10-03T09:17:27,580 # Package would be ignored # 2022-10-03T09:17:27,580 ############################ 2022-10-03T09:17:27,580 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PE.polyply' as an importable package, however it is 2022-10-03T09:17:27,581 included in the distribution as "data". 2022-10-03T09:17:27,581 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,581 therefore is considered deprecated). 2022-10-03T09:17:27,582 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PE.polyply' is included as a package by using 2022-10-03T09:17:27,582 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,583 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,583 documentation page. 2022-10-03T09:17:27,584 !! 2022-10-03T09:17:27,584 check.warn(importable) 2022-10-03T09:17:27,585 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,586 ############################ 2022-10-03T09:17:27,586 # Package would be ignored # 2022-10-03T09:17:27,586 ############################ 2022-10-03T09:17:27,586 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' as an importable package, however it is 2022-10-03T09:17:27,587 included in the distribution as "data". 2022-10-03T09:17:27,587 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,587 therefore is considered deprecated). 2022-10-03T09:17:27,588 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' is included as a package by using 2022-10-03T09:17:27,588 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,589 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,589 documentation page. 2022-10-03T09:17:27,590 !! 2022-10-03T09:17:27,590 check.warn(importable) 2022-10-03T09:17:27,591 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,592 ############################ 2022-10-03T09:17:27,592 # Package would be ignored # 2022-10-03T09:17:27,592 ############################ 2022-10-03T09:17:27,593 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' as an importable package, however it is 2022-10-03T09:17:27,593 included in the distribution as "data". 2022-10-03T09:17:27,593 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,594 therefore is considered deprecated). 2022-10-03T09:17:27,594 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' is included as a package by using 2022-10-03T09:17:27,595 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,595 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,596 documentation page. 2022-10-03T09:17:27,597 !! 2022-10-03T09:17:27,597 check.warn(importable) 2022-10-03T09:17:27,598 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:27,599 ############################ 2022-10-03T09:17:27,599 # Package would be ignored # 2022-10-03T09:17:27,599 ############################ 2022-10-03T09:17:27,600 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT' as an importable package, however it is 2022-10-03T09:17:27,600 included in the distribution as "data". 2022-10-03T09:17:27,600 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:27,601 therefore is considered deprecated). 2022-10-03T09:17:27,601 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT' is included as a package by using 2022-10-03T09:17:27,602 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:27,602 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:27,603 documentation page. 2022-10-03T09:17:27,604 !! 2022-10-03T09:17:27,604 check.warn(importable) 2022-10-03T09:17:27,605 creating build/lib/polyply/data/martini2 2022-10-03T09:17:27,605 copying polyply/data/martini2/P3HT.martini.2.itp -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,605 copying polyply/data/martini2/PEO.martini.2.itp -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,606 copying polyply/data/martini2/DNA_M2.ff -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,609 copying polyply/data/martini2/links.ff -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,614 copying polyply/data/martini2/PS.martini.2.itp -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,618 copying polyply/data/martini2/PSS.martini.2.itp -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,622 copying polyply/data/martini2/PE.martini.2.itp -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,626 copying polyply/data/martini2/PDADMA.martini.2.itp -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,631 copying polyply/data/martini2/citations.bib -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,635 copying polyply/data/martini2/PP.martini.2.itp -> build/lib/polyply/data/martini2 2022-10-03T09:17:27,639 creating build/lib/polyply/data/2016H66 2022-10-03T09:17:27,640 copying polyply/data/2016H66/chiral_links.ff -> build/lib/polyply/data/2016H66 2022-10-03T09:17:27,644 copying polyply/data/2016H66/polyether_links.ff -> build/lib/polyply/data/2016H66 2022-10-03T09:17:27,649 copying polyply/data/2016H66/polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2022-10-03T09:17:27,663 copying polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2022-10-03T09:17:27,668 copying polyply/data/2016H66/terminal_blocks.ff -> build/lib/polyply/data/2016H66 2022-10-03T09:17:27,672 copying polyply/data/2016H66/polyvinyl_blocks.ff -> build/lib/polyply/data/2016H66 2022-10-03T09:17:27,677 copying polyply/data/2016H66/polyether_blocks.ff -> build/lib/polyply/data/2016H66 2022-10-03T09:17:27,681 copying polyply/data/2016H66/citation.bib -> build/lib/polyply/data/2016H66 2022-10-03T09:17:27,684 creating build/lib/polyply/data/gromos53A6 2022-10-03T09:17:27,686 copying polyply/data/gromos53A6/Hter.ff -> build/lib/polyply/data/gromos53A6 2022-10-03T09:17:27,690 copying polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/lib/polyply/data/gromos53A6 2022-10-03T09:17:27,694 copying polyply/data/gromos53A6/links.ff -> build/lib/polyply/data/gromos53A6 2022-10-03T09:17:27,698 copying polyply/data/gromos53A6/citations.bib -> build/lib/polyply/data/gromos53A6 2022-10-03T09:17:27,702 creating build/lib/polyply/data/martini3 2022-10-03T09:17:27,704 copying polyply/data/martini3/PE.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,708 copying polyply/data/martini3/P3HT.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,712 copying polyply/data/martini3/PVA.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,716 copying polyply/data/martini3/PSS.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,720 copying polyply/data/martini3/aminoacids.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,726 copying polyply/data/martini3/PS_PEO_link.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,730 copying polyply/data/martini3/PEO.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,734 copying polyply/data/martini3/PEL_link.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,738 copying polyply/data/martini3/PPE.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,742 copying polyply/data/martini3/citations.bib -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,746 copying polyply/data/martini3/PMA.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,750 copying polyply/data/martini3/PMMA.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,754 copying polyply/data/martini3/PS.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,757 copying polyply/data/martini3/dextran.martini3.ff -> build/lib/polyply/data/martini3 2022-10-03T09:17:27,761 creating build/lib/polyply/data/oplsaaLigParGen 2022-10-03T09:17:27,762 copying polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/lib/polyply/data/oplsaaLigParGen 2022-10-03T09:17:27,767 copying polyply/data/oplsaaLigParGen/links.ff -> build/lib/polyply/data/oplsaaLigParGen 2022-10-03T09:17:27,772 copying polyply/data/oplsaaLigParGen/citations.bib -> build/lib/polyply/data/oplsaaLigParGen 2022-10-03T09:17:27,776 copying polyply/data/oplsaaLigParGen/OHter.ff -> build/lib/polyply/data/oplsaaLigParGen 2022-10-03T09:17:27,780 creating build/lib/polyply/data/martini3_beta 2022-10-03T09:17:27,782 copying polyply/data/martini3_beta/PEO.martini.3.itp -> build/lib/polyply/data/martini3_beta 2022-10-03T09:17:27,786 copying polyply/data/martini3_beta/citations.bib -> build/lib/polyply/data/martini3_beta 2022-10-03T09:17:27,790 creating build/lib/polyply/data/parmbsc1 2022-10-03T09:17:27,791 copying polyply/data/parmbsc1/dna_final.ff -> build/lib/polyply/data/parmbsc1 2022-10-03T09:17:27,800 copying polyply/data/parmbsc1/citations.bib -> build/lib/polyply/data/parmbsc1 2022-10-03T09:17:27,804 creating build/lib/polyply/tests/test_data 2022-10-03T09:17:27,805 creating build/lib/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:27,807 copying polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:27,811 copying polyply/tests/test_data/simple_seq_files/test.txt -> build/lib/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:27,815 copying polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:27,819 copying polyply/tests/test_data/simple_seq_files/test.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:27,822 copying polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:27,826 copying polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:27,830 copying polyply/tests/test_data/simple_seq_files/test.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:27,834 creating build/lib/polyply/tests/test_data/json 2022-10-03T09:17:27,835 copying polyply/tests/test_data/json/fail.json -> build/lib/polyply/tests/test_data/json 2022-10-03T09:17:27,839 copying polyply/tests/test_data/json/linear.json -> build/lib/polyply/tests/test_data/json 2022-10-03T09:17:27,843 copying polyply/tests/test_data/json/single_branch.json -> build/lib/polyply/tests/test_data/json 2022-10-03T09:17:27,847 copying polyply/tests/test_data/json/linear_rev.json -> build/lib/polyply/tests/test_data/json 2022-10-03T09:17:27,851 copying polyply/tests/test_data/json/double_branch.json -> build/lib/polyply/tests/test_data/json 2022-10-03T09:17:27,855 copying polyply/tests/test_data/json/hyperbranched.json -> build/lib/polyply/tests/test_data/json 2022-10-03T09:17:27,859 creating build/lib/polyply/tests/test_data/library_tests 2022-10-03T09:17:27,859 creating build/lib/polyply/tests/test_data/library_tests/martini2 2022-10-03T09:17:27,860 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-10-03T09:17:27,862 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-10-03T09:17:27,866 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-10-03T09:17:27,868 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-10-03T09:17:27,872 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-10-03T09:17:27,876 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO 2022-10-03T09:17:27,877 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-10-03T09:17:27,879 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-10-03T09:17:27,884 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-10-03T09:17:27,888 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2022-10-03T09:17:27,889 copying polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2022-10-03T09:17:27,893 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-10-03T09:17:27,895 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-10-03T09:17:27,901 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-10-03T09:17:27,904 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS 2022-10-03T09:17:27,905 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-10-03T09:17:27,907 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-10-03T09:17:27,911 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-10-03T09:17:27,915 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-10-03T09:17:27,916 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-10-03T09:17:27,931 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-10-03T09:17:27,936 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-10-03T09:17:27,937 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-10-03T09:17:27,958 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-10-03T09:17:27,962 creating build/lib/polyply/tests/test_data/library_tests/2016H66 2022-10-03T09:17:27,962 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2022-10-03T09:17:27,964 copying polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2022-10-03T09:17:27,968 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-10-03T09:17:27,970 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-10-03T09:17:27,974 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-10-03T09:17:27,978 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2022-10-03T09:17:27,979 copying polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2022-10-03T09:17:27,984 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-10-03T09:17:27,985 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-10-03T09:17:27,989 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-10-03T09:17:27,993 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2022-10-03T09:17:27,995 copying polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2022-10-03T09:17:27,999 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-10-03T09:17:28,000 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-10-03T09:17:28,004 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-10-03T09:17:28,008 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2022-10-03T09:17:28,009 copying polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2022-10-03T09:17:28,013 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-10-03T09:17:28,015 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-10-03T09:17:28,019 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-10-03T09:17:28,023 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4 2022-10-03T09:17:28,023 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-10-03T09:17:28,025 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-10-03T09:17:28,030 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-10-03T09:17:28,034 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2022-10-03T09:17:28,035 copying polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2022-10-03T09:17:28,039 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-10-03T09:17:28,040 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-10-03T09:17:28,044 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-10-03T09:17:28,049 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6 2022-10-03T09:17:28,050 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2022-10-03T09:17:28,051 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-10-03T09:17:28,053 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-10-03T09:17:28,057 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-10-03T09:17:28,062 creating build/lib/polyply/tests/test_data/library_tests/martini3 2022-10-03T09:17:28,063 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO 2022-10-03T09:17:28,064 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-10-03T09:17:28,066 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-10-03T09:17:28,070 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-10-03T09:17:28,074 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2022-10-03T09:17:28,075 copying polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2022-10-03T09:17:28,081 copying polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2022-10-03T09:17:28,086 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-10-03T09:17:28,088 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-10-03T09:17:28,094 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-10-03T09:17:28,098 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE 2022-10-03T09:17:28,098 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-10-03T09:17:28,100 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-10-03T09:17:28,104 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-10-03T09:17:28,108 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX 2022-10-03T09:17:28,109 copying polyply/tests/test_data/library_tests/martini3/DEX/input.json -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX 2022-10-03T09:17:28,115 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-10-03T09:17:28,116 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-10-03T09:17:28,121 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-10-03T09:17:28,125 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE 2022-10-03T09:17:28,126 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-10-03T09:17:28,128 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-10-03T09:17:28,132 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-10-03T09:17:28,137 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT 2022-10-03T09:17:28,137 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-10-03T09:17:28,139 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-10-03T09:17:28,143 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-10-03T09:17:28,147 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS 2022-10-03T09:17:28,148 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-10-03T09:17:28,150 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-10-03T09:17:28,154 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-10-03T09:17:28,158 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen 2022-10-03T09:17:28,159 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2022-10-03T09:17:28,160 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-10-03T09:17:28,162 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-10-03T09:17:28,167 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-10-03T09:17:28,171 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1 2022-10-03T09:17:28,171 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-10-03T09:17:28,173 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-10-03T09:17:28,189 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-10-03T09:17:28,192 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-10-03T09:17:28,194 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-10-03T09:17:28,209 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-10-03T09:17:28,212 creating build/lib/polyply/tests/test_data/gen_seq 2022-10-03T09:17:28,213 creating build/lib/polyply/tests/test_data/gen_seq/input 2022-10-03T09:17:28,215 copying polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/lib/polyply/tests/test_data/gen_seq/input 2022-10-03T09:17:28,222 creating build/lib/polyply/tests/test_data/gen_seq/ref 2022-10-03T09:17:28,224 copying polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2022-10-03T09:17:28,228 copying polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2022-10-03T09:17:28,234 copying polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2022-10-03T09:17:28,238 creating build/lib/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:28,239 copying polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:28,249 copying polyply/tests/test_data/gen_seq/output/PPI.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:28,253 copying polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:28,257 copying polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:28,267 copying polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:28,271 creating build/lib/polyply/tests/test_data/gen_params 2022-10-03T09:17:28,271 creating build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,273 copying polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,277 copying polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,280 copying polyply/tests/test_data/gen_params/input/test.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,284 copying polyply/tests/test_data/gen_params/input/PPI.json -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,288 copying polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,291 copying polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,295 copying polyply/tests/test_data/gen_params/input/removal.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,299 copying polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,302 copying polyply/tests/test_data/gen_params/input/PS.json -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,306 copying polyply/tests/test_data/gen_params/input/PPI.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:28,309 creating build/lib/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:28,311 copying polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:28,315 copying polyply/tests/test_data/gen_params/ref/end.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:28,318 copying polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:28,323 copying polyply/tests/test_data/gen_params/ref/removal.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:28,326 copying polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:28,330 copying polyply/tests/test_data/gen_params/ref/G3.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:28,334 copying polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:28,339 copying polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:28,342 creating build/lib/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:28,344 copying polyply/tests/test_data/gen_params/output/PEO_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:28,348 copying polyply/tests/test_data/gen_params/output/P3HT_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:28,352 copying polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:28,356 copying polyply/tests/test_data/gen_params/output/PS_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:28,360 copying polyply/tests/test_data/gen_params/output/test_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:28,364 copying polyply/tests/test_data/gen_params/output/removal.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:28,368 copying polyply/tests/test_data/gen_params/output/PPI_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:28,371 creating build/lib/polyply/tests/test_data/struc_build 2022-10-03T09:17:28,373 copying polyply/tests/test_data/struc_build/PEO.itp -> build/lib/polyply/tests/test_data/struc_build 2022-10-03T09:17:28,377 copying polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/lib/polyply/tests/test_data/struc_build 2022-10-03T09:17:28,384 copying polyply/tests/test_data/struc_build/system.top -> build/lib/polyply/tests/test_data/struc_build 2022-10-03T09:17:28,387 creating build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,389 copying polyply/tests/test_data/topology_test/meta.gro -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,392 copying polyply/tests/test_data/topology_test/molecule_0.itp -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,403 copying polyply/tests/test_data/topology_test/cog.gro -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,407 copying polyply/tests/test_data/topology_test/cog_missing.gro -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,410 copying polyply/tests/test_data/topology_test/test.pdb -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,418 copying polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,438 copying polyply/tests/test_data/topology_test/W.itp -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,442 copying polyply/tests/test_data/topology_test/test.itp -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,446 copying polyply/tests/test_data/topology_test/system.top -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,449 copying polyply/tests/test_data/topology_test/complete.gro -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,453 copying polyply/tests/test_data/topology_test/test.gro -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,456 copying polyply/tests/test_data/topology_test/fail.gro -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,460 copying polyply/tests/test_data/topology_test/pdb.top -> build/lib/polyply/tests/test_data/topology_test 2022-10-03T09:17:28,464 creating build/lib/polyply/tests/test_data/ff 2022-10-03T09:17:28,465 copying polyply/tests/test_data/ff/aminoacids.ff -> build/lib/polyply/tests/test_data/ff 2022-10-03T09:17:28,471 creating build/lib/polyply/tests/test_data/itp 2022-10-03T09:17:28,472 copying polyply/tests/test_data/itp/PEO.itp -> build/lib/polyply/tests/test_data/itp 2022-10-03T09:17:28,476 creating build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,477 copying polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,481 copying polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,485 copying polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,488 copying polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,492 copying polyply/tests/test_data/polyply/PS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,495 copying polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,499 copying polyply/tests/test_data/polyply/PE.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,503 copying polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,507 copying polyply/tests/test_data/polyply/PP.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-10-03T09:17:28,548 copying polyply/tests/.coverage -> build/lib/polyply/tests 2022-10-03T09:17:28,685 running build_scripts 2022-10-03T09:17:28,686 creating build/scripts-3.7 2022-10-03T09:17:28,687 copying and adjusting bin/polyply -> build/scripts-3.7 2022-10-03T09:17:28,691 changing mode of build/scripts-3.7/polyply from 644 to 755 2022-10-03T09:17:28,693 installing to build/bdist.linux-armv7l/wheel 2022-10-03T09:17:28,693 running install 2022-10-03T09:17:28,814 [pbr] Generating AUTHORS 2022-10-03T09:17:28,842 [pbr] AUTHORS complete (0.0s) 2022-10-03T09:17:28,843 running install_lib 2022-10-03T09:17:29,484 creating build/bdist.linux-armv7l 2022-10-03T09:17:29,484 creating build/bdist.linux-armv7l/wheel 2022-10-03T09:17:29,487 creating build/bdist.linux-armv7l/wheel/polyply 2022-10-03T09:17:29,491 creating build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,493 copying build/lib/polyply/src/gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,497 copying build/lib/polyply/src/processor.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,500 copying build/lib/polyply/src/linalg_functions.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,504 copying build/lib/polyply/src/graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,508 copying build/lib/polyply/src/ff_parser_sub.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,512 copying build/lib/polyply/src/map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,516 copying build/lib/polyply/src/topology.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,521 copying build/lib/polyply/src/annotate_ligands.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,525 copying build/lib/polyply/src/load_library.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,528 copying build/lib/polyply/src/persistence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,532 copying build/lib/polyply/src/build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,536 copying build/lib/polyply/src/random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,540 copying build/lib/polyply/src/gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,544 copying build/lib/polyply/src/meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,548 copying build/lib/polyply/src/apply_modifications.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,551 copying build/lib/polyply/src/restraints.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,555 copying build/lib/polyply/src/polyply_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,558 copying build/lib/polyply/src/gen_itp.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,562 copying build/lib/polyply/src/simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,566 copying build/lib/polyply/src/build_system.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,570 copying build/lib/polyply/src/generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,574 copying build/lib/polyply/src/minimizer.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,578 copying build/lib/polyply/src/virtual_site_builder.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,582 copying build/lib/polyply/src/apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,586 copying build/lib/polyply/src/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,589 copying build/lib/polyply/src/top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,594 copying build/lib/polyply/src/check_residue_equivalence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,597 copying build/lib/polyply/src/logging.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,600 copying build/lib/polyply/src/backmap.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,604 copying build/lib/polyply/src/nonbond_engine.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-10-03T09:17:29,610 creating build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,612 copying build/lib/polyply/tests/test_random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,616 copying build/lib/polyply/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,619 copying build/lib/polyply/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,624 copying build/lib/polyply/tests/test_build_system.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,628 copying build/lib/polyply/tests/test_simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,631 copying build/lib/polyply/tests/test_build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,636 copying build/lib/polyply/tests/.coverage -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,643 copying build/lib/polyply/tests/test_lib_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,647 copying build/lib/polyply/tests/test_residue_check.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,650 copying build/lib/polyply/tests/test_gen_coords_logic.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,654 copying build/lib/polyply/tests/test_ff_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,657 copying build/lib/polyply/tests/test_generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,661 copying build/lib/polyply/tests/test_polyply_input.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,664 copying build/lib/polyply/tests/test_optimize_geometry.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,668 copying build/lib/polyply/tests/test_restraints.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,671 copying build/lib/polyply/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,675 copying build/lib/polyply/tests/test_linalg.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,679 copying build/lib/polyply/tests/test_persistence.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,683 copying build/lib/polyply/tests/test_nb_engine.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,687 copying build/lib/polyply/tests/test_load_library.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,690 copying build/lib/polyply/tests/example_fixtures.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,693 copying build/lib/polyply/tests/test_meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:29,698 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data 2022-10-03T09:17:29,701 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:29,703 copying build/lib/polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:29,706 copying build/lib/polyply/tests/test_data/simple_seq_files/test.txt -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:29,709 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:29,712 copying build/lib/polyply/tests/test_data/simple_seq_files/test.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:29,716 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:29,719 copying build/lib/polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:29,722 copying build/lib/polyply/tests/test_data/simple_seq_files/test.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-10-03T09:17:29,726 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-10-03T09:17:29,728 copying build/lib/polyply/tests/test_data/json/fail.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-10-03T09:17:29,731 copying build/lib/polyply/tests/test_data/json/linear.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-10-03T09:17:29,734 copying build/lib/polyply/tests/test_data/json/single_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-10-03T09:17:29,737 copying build/lib/polyply/tests/test_data/json/linear_rev.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-10-03T09:17:29,740 copying build/lib/polyply/tests/test_data/json/double_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-10-03T09:17:29,744 copying build/lib/polyply/tests/test_data/json/hyperbranched.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-10-03T09:17:29,749 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests 2022-10-03T09:17:29,751 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2 2022-10-03T09:17:29,754 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-10-03T09:17:29,755 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-10-03T09:17:29,760 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-10-03T09:17:29,761 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-10-03T09:17:29,765 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-10-03T09:17:29,769 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO 2022-10-03T09:17:29,772 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-10-03T09:17:29,773 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-10-03T09:17:29,778 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-10-03T09:17:29,782 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2022-10-03T09:17:29,784 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2022-10-03T09:17:29,788 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-10-03T09:17:29,789 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-10-03T09:17:29,794 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-10-03T09:17:29,798 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS 2022-10-03T09:17:29,801 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-10-03T09:17:29,802 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-10-03T09:17:29,806 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-10-03T09:17:29,811 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-10-03T09:17:29,812 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-10-03T09:17:29,831 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-10-03T09:17:29,837 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-10-03T09:17:29,839 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-10-03T09:17:29,859 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-10-03T09:17:29,864 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66 2022-10-03T09:17:29,867 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2022-10-03T09:17:29,869 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2022-10-03T09:17:29,875 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-10-03T09:17:29,877 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-10-03T09:17:29,881 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-10-03T09:17:29,887 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2022-10-03T09:17:29,889 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2022-10-03T09:17:29,894 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-10-03T09:17:29,896 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-10-03T09:17:29,900 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-10-03T09:17:29,906 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2022-10-03T09:17:29,908 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2022-10-03T09:17:29,913 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-10-03T09:17:29,915 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-10-03T09:17:29,919 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-10-03T09:17:29,925 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2022-10-03T09:17:29,927 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2022-10-03T09:17:29,932 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-10-03T09:17:29,934 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-10-03T09:17:29,938 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-10-03T09:17:29,944 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4 2022-10-03T09:17:29,947 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-10-03T09:17:29,949 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-10-03T09:17:29,954 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-10-03T09:17:29,960 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2022-10-03T09:17:29,962 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2022-10-03T09:17:29,967 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-10-03T09:17:29,969 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-10-03T09:17:29,973 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-10-03T09:17:29,979 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6 2022-10-03T09:17:29,982 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2022-10-03T09:17:29,986 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-10-03T09:17:29,988 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-10-03T09:17:29,992 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-10-03T09:17:29,999 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3 2022-10-03T09:17:30,002 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO 2022-10-03T09:17:30,006 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-10-03T09:17:30,007 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-10-03T09:17:30,011 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-10-03T09:17:30,015 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2022-10-03T09:17:30,017 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2022-10-03T09:17:30,021 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2022-10-03T09:17:30,027 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-10-03T09:17:30,029 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-10-03T09:17:30,036 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-10-03T09:17:30,041 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE 2022-10-03T09:17:30,044 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-10-03T09:17:30,046 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-10-03T09:17:30,050 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-10-03T09:17:30,055 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX 2022-10-03T09:17:30,057 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/input.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX 2022-10-03T09:17:30,063 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-10-03T09:17:30,066 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-10-03T09:17:30,072 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-10-03T09:17:30,077 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE 2022-10-03T09:17:30,080 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-10-03T09:17:30,082 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-10-03T09:17:30,085 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-10-03T09:17:30,091 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT 2022-10-03T09:17:30,093 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-10-03T09:17:30,095 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-10-03T09:17:30,099 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-10-03T09:17:30,103 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS 2022-10-03T09:17:30,106 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-10-03T09:17:30,108 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-10-03T09:17:30,111 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-10-03T09:17:30,116 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen 2022-10-03T09:17:30,118 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2022-10-03T09:17:30,121 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-10-03T09:17:30,123 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-10-03T09:17:30,128 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-10-03T09:17:30,132 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1 2022-10-03T09:17:30,135 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-10-03T09:17:30,136 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-10-03T09:17:30,147 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-10-03T09:17:30,151 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-10-03T09:17:30,153 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-10-03T09:17:30,168 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-10-03T09:17:30,172 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq 2022-10-03T09:17:30,175 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2022-10-03T09:17:30,177 copying build/lib/polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2022-10-03T09:17:30,184 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2022-10-03T09:17:30,185 copying build/lib/polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2022-10-03T09:17:30,189 copying build/lib/polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2022-10-03T09:17:30,195 copying build/lib/polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2022-10-03T09:17:30,200 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:30,201 copying build/lib/polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:30,211 copying build/lib/polyply/tests/test_data/gen_seq/output/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:30,215 copying build/lib/polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:30,218 copying build/lib/polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:30,229 copying build/lib/polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-10-03T09:17:30,234 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params 2022-10-03T09:17:30,237 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,240 copying build/lib/polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,244 copying build/lib/polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,248 copying build/lib/polyply/tests/test_data/gen_params/input/test.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,252 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,256 copying build/lib/polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,260 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,264 copying build/lib/polyply/tests/test_data/gen_params/input/removal.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,268 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,272 copying build/lib/polyply/tests/test_data/gen_params/input/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,276 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-10-03T09:17:30,281 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:30,284 copying build/lib/polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:30,288 copying build/lib/polyply/tests/test_data/gen_params/ref/end.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:30,292 copying build/lib/polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:30,297 copying build/lib/polyply/tests/test_data/gen_params/ref/removal.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:30,301 copying build/lib/polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:30,305 copying build/lib/polyply/tests/test_data/gen_params/ref/G3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:30,309 copying build/lib/polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:30,314 copying build/lib/polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-10-03T09:17:30,319 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:30,321 copying build/lib/polyply/tests/test_data/gen_params/output/PEO_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:30,325 copying build/lib/polyply/tests/test_data/gen_params/output/P3HT_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:30,330 copying build/lib/polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:30,334 copying build/lib/polyply/tests/test_data/gen_params/output/PS_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:30,339 copying build/lib/polyply/tests/test_data/gen_params/output/test_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:30,343 copying build/lib/polyply/tests/test_data/gen_params/output/removal.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:30,347 copying build/lib/polyply/tests/test_data/gen_params/output/PPI_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-10-03T09:17:30,352 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2022-10-03T09:17:30,355 copying build/lib/polyply/tests/test_data/struc_build/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2022-10-03T09:17:30,359 copying build/lib/polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2022-10-03T09:17:30,367 copying build/lib/polyply/tests/test_data/struc_build/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2022-10-03T09:17:30,372 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,374 copying build/lib/polyply/tests/test_data/topology_test/meta.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,378 copying build/lib/polyply/tests/test_data/topology_test/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,388 copying build/lib/polyply/tests/test_data/topology_test/cog.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,392 copying build/lib/polyply/tests/test_data/topology_test/cog_missing.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,396 copying build/lib/polyply/tests/test_data/topology_test/test.pdb -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,405 copying build/lib/polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,430 copying build/lib/polyply/tests/test_data/topology_test/W.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,434 copying build/lib/polyply/tests/test_data/topology_test/test.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,438 copying build/lib/polyply/tests/test_data/topology_test/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,441 copying build/lib/polyply/tests/test_data/topology_test/complete.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,445 copying build/lib/polyply/tests/test_data/topology_test/test.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,448 copying build/lib/polyply/tests/test_data/topology_test/fail.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,452 copying build/lib/polyply/tests/test_data/topology_test/pdb.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-10-03T09:17:30,458 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2022-10-03T09:17:30,460 copying build/lib/polyply/tests/test_data/ff/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2022-10-03T09:17:30,467 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2022-10-03T09:17:30,469 copying build/lib/polyply/tests/test_data/itp/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2022-10-03T09:17:30,474 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,475 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,479 copying build/lib/polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,482 copying build/lib/polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,486 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,489 copying build/lib/polyply/tests/test_data/polyply/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,492 copying build/lib/polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,496 copying build/lib/polyply/tests/test_data/polyply/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,499 copying build/lib/polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,502 copying build/lib/polyply/tests/test_data/polyply/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-10-03T09:17:30,506 copying build/lib/polyply/tests/test_gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,510 copying build/lib/polyply/tests/test_topology.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,516 copying build/lib/polyply/tests/test_vs_builder.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,520 copying build/lib/polyply/tests/test_backmap.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,524 copying build/lib/polyply/tests/test_apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,530 copying build/lib/polyply/tests/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,533 copying build/lib/polyply/tests/test_gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,536 copying build/lib/polyply/tests/test_gen_params.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,540 copying build/lib/polyply/tests/test_annotate_lingads.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,544 copying build/lib/polyply/tests/test_top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,549 copying build/lib/polyply/tests/test_map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-10-03T09:17:30,554 creating build/bdist.linux-armv7l/wheel/polyply/data 2022-10-03T09:17:30,557 creating build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,559 copying build/lib/polyply/data/martini2/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,562 copying build/lib/polyply/data/martini2/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,565 copying build/lib/polyply/data/martini2/DNA_M2.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,570 copying build/lib/polyply/data/martini2/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,573 copying build/lib/polyply/data/martini2/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,576 copying build/lib/polyply/data/martini2/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,580 copying build/lib/polyply/data/martini2/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,583 copying build/lib/polyply/data/martini2/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,586 copying build/lib/polyply/data/martini2/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,590 copying build/lib/polyply/data/martini2/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-10-03T09:17:30,595 creating build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-10-03T09:17:30,596 copying build/lib/polyply/data/2016H66/chiral_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-10-03T09:17:30,600 copying build/lib/polyply/data/2016H66/polyether_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-10-03T09:17:30,604 copying build/lib/polyply/data/2016H66/polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-10-03T09:17:30,608 copying build/lib/polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-10-03T09:17:30,612 copying build/lib/polyply/data/2016H66/terminal_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-10-03T09:17:30,615 copying build/lib/polyply/data/2016H66/polyvinyl_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-10-03T09:17:30,620 copying build/lib/polyply/data/2016H66/polyether_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-10-03T09:17:30,623 copying build/lib/polyply/data/2016H66/citation.bib -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-10-03T09:17:30,627 creating build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-10-03T09:17:30,628 copying build/lib/polyply/data/gromos53A6/Hter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-10-03T09:17:30,632 copying build/lib/polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-10-03T09:17:30,636 copying build/lib/polyply/data/gromos53A6/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-10-03T09:17:30,639 copying build/lib/polyply/data/gromos53A6/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-10-03T09:17:30,644 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,646 copying build/lib/polyply/data/martini3/PE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,649 copying build/lib/polyply/data/martini3/P3HT.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,652 copying build/lib/polyply/data/martini3/PVA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,656 copying build/lib/polyply/data/martini3/PSS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,659 copying build/lib/polyply/data/martini3/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,664 copying build/lib/polyply/data/martini3/PS_PEO_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,667 copying build/lib/polyply/data/martini3/PEO.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,670 copying build/lib/polyply/data/martini3/PEL_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,674 copying build/lib/polyply/data/martini3/PPE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,678 copying build/lib/polyply/data/martini3/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,681 copying build/lib/polyply/data/martini3/PMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,685 copying build/lib/polyply/data/martini3/PMMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,688 copying build/lib/polyply/data/martini3/PS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,692 copying build/lib/polyply/data/martini3/dextran.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-10-03T09:17:30,696 creating build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-10-03T09:17:30,698 copying build/lib/polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-10-03T09:17:30,701 copying build/lib/polyply/data/oplsaaLigParGen/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-10-03T09:17:30,705 copying build/lib/polyply/data/oplsaaLigParGen/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-10-03T09:17:30,709 copying build/lib/polyply/data/oplsaaLigParGen/OHter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-10-03T09:17:30,713 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2022-10-03T09:17:30,714 copying build/lib/polyply/data/martini3_beta/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2022-10-03T09:17:30,718 copying build/lib/polyply/data/martini3_beta/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2022-10-03T09:17:30,721 copying build/lib/polyply/data/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/data 2022-10-03T09:17:30,725 creating build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2022-10-03T09:17:30,727 copying build/lib/polyply/data/parmbsc1/dna_final.ff -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2022-10-03T09:17:30,734 copying build/lib/polyply/data/parmbsc1/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2022-10-03T09:17:30,737 copying build/lib/polyply/__init__.py -> build/bdist.linux-armv7l/wheel/polyply 2022-10-03T09:17:30,740 running install_egg_info 2022-10-03T09:17:31,368 Copying polyply.egg-info to build/bdist.linux-armv7l/wheel/polyply-1.4.0-py3.7.egg-info 2022-10-03T09:17:31,398 running install_scripts 2022-10-03T09:17:31,400 creating build/bdist.linux-armv7l/wheel/polyply-1.4.0.data 2022-10-03T09:17:31,401 creating build/bdist.linux-armv7l/wheel/polyply-1.4.0.data/scripts 2022-10-03T09:17:31,403 copying build/scripts-3.7/polyply -> build/bdist.linux-armv7l/wheel/polyply-1.4.0.data/scripts 2022-10-03T09:17:31,408 changing mode of build/bdist.linux-armv7l/wheel/polyply-1.4.0.data/scripts/polyply to 755 2022-10-03T09:17:31,469 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-03T09:17:31,471 adding license file "AUTHORS" (matched pattern "AUTHORS*") 2022-10-03T09:17:31,482 creating build/bdist.linux-armv7l/wheel/polyply-1.4.0.dist-info/WHEEL 2022-10-03T09:17:31,487 creating '/tmp/pip-wheel-b7q7a8yv/tmp6o0u2zu0/polyply-1.4.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-03T09:17:31,492 adding 'polyply/__init__.py' 2022-10-03T09:17:31,496 adding 'polyply/data/__init__.py' 2022-10-03T09:17:31,499 adding 'polyply/data/2016H66/chiral_links.ff' 2022-10-03T09:17:31,502 adding 'polyply/data/2016H66/citation.bib' 2022-10-03T09:17:31,504 adding 'polyply/data/2016H66/polyether_blocks.ff' 2022-10-03T09:17:31,507 adding 'polyply/data/2016H66/polyether_links.ff' 2022-10-03T09:17:31,509 adding 'polyply/data/2016H66/polyether_polyvinyl_links.ff' 2022-10-03T09:17:31,513 adding 'polyply/data/2016H66/polyvinyl_blocks.ff' 2022-10-03T09:17:31,516 adding 'polyply/data/2016H66/polyvinyl_links.ff' 2022-10-03T09:17:31,518 adding 'polyply/data/2016H66/terminal_blocks.ff' 2022-10-03T09:17:31,521 adding 'polyply/data/gromos53A6/Hter.ff' 2022-10-03T09:17:31,525 adding 'polyply/data/gromos53A6/P3HT.gromos.53A6.ff' 2022-10-03T09:17:31,527 adding 'polyply/data/gromos53A6/citations.bib' 2022-10-03T09:17:31,530 adding 'polyply/data/gromos53A6/links.ff' 2022-10-03T09:17:31,535 adding 'polyply/data/martini2/DNA_M2.ff' 2022-10-03T09:17:31,538 adding 'polyply/data/martini2/P3HT.martini.2.itp' 2022-10-03T09:17:31,540 adding 'polyply/data/martini2/PDADMA.martini.2.itp' 2022-10-03T09:17:31,542 adding 'polyply/data/martini2/PE.martini.2.itp' 2022-10-03T09:17:31,544 adding 'polyply/data/martini2/PEO.martini.2.itp' 2022-10-03T09:17:31,546 adding 'polyply/data/martini2/PP.martini.2.itp' 2022-10-03T09:17:31,549 adding 'polyply/data/martini2/PS.martini.2.itp' 2022-10-03T09:17:31,551 adding 'polyply/data/martini2/PSS.martini.2.itp' 2022-10-03T09:17:31,554 adding 'polyply/data/martini2/citations.bib' 2022-10-03T09:17:31,556 adding 'polyply/data/martini2/links.ff' 2022-10-03T09:17:31,560 adding 'polyply/data/martini3/P3HT.martini3.ff' 2022-10-03T09:17:31,563 adding 'polyply/data/martini3/PE.martini3.ff' 2022-10-03T09:17:31,565 adding 'polyply/data/martini3/PEL_link.ff' 2022-10-03T09:17:31,567 adding 'polyply/data/martini3/PEO.martini3.ff' 2022-10-03T09:17:31,570 adding 'polyply/data/martini3/PMA.martini3.ff' 2022-10-03T09:17:31,572 adding 'polyply/data/martini3/PMMA.martini3.ff' 2022-10-03T09:17:31,575 adding 'polyply/data/martini3/PPE.martini3.ff' 2022-10-03T09:17:31,577 adding 'polyply/data/martini3/PS.martini3.ff' 2022-10-03T09:17:31,580 adding 'polyply/data/martini3/PSS.martini3.ff' 2022-10-03T09:17:31,582 adding 'polyply/data/martini3/PS_PEO_link.ff' 2022-10-03T09:17:31,584 adding 'polyply/data/martini3/PVA.martini3.ff' 2022-10-03T09:17:31,588 adding 'polyply/data/martini3/aminoacids.ff' 2022-10-03T09:17:31,591 adding 'polyply/data/martini3/citations.bib' 2022-10-03T09:17:31,594 adding 'polyply/data/martini3/dextran.martini3.ff' 2022-10-03T09:17:31,597 adding 'polyply/data/martini3_beta/PEO.martini.3.itp' 2022-10-03T09:17:31,599 adding 'polyply/data/martini3_beta/citations.bib' 2022-10-03T09:17:31,603 adding 'polyply/data/oplsaaLigParGen/OHter.ff' 2022-10-03T09:17:31,606 adding 'polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff' 2022-10-03T09:17:31,608 adding 'polyply/data/oplsaaLigParGen/citations.bib' 2022-10-03T09:17:31,611 adding 'polyply/data/oplsaaLigParGen/links.ff' 2022-10-03T09:17:31,614 adding 'polyply/data/parmbsc1/citations.bib' 2022-10-03T09:17:31,629 adding 'polyply/data/parmbsc1/dna_final.ff' 2022-10-03T09:17:31,634 adding 'polyply/src/__init__.py' 2022-10-03T09:17:31,638 adding 'polyply/src/annotate_ligands.py' 2022-10-03T09:17:31,645 adding 'polyply/src/apply_links.py' 2022-10-03T09:17:31,647 adding 'polyply/src/apply_modifications.py' 2022-10-03T09:17:31,651 adding 'polyply/src/backmap.py' 2022-10-03T09:17:31,655 adding 'polyply/src/build_file_parser.py' 2022-10-03T09:17:31,659 adding 'polyply/src/build_system.py' 2022-10-03T09:17:31,662 adding 'polyply/src/check_residue_equivalence.py' 2022-10-03T09:17:31,664 adding 'polyply/src/ff_parser_sub.py' 2022-10-03T09:17:31,668 adding 'polyply/src/gen_coords.py' 2022-10-03T09:17:31,671 adding 'polyply/src/gen_itp.py' 2022-10-03T09:17:31,676 adding 'polyply/src/gen_seq.py' 2022-10-03T09:17:31,680 adding 'polyply/src/generate_templates.py' 2022-10-03T09:17:31,684 adding 'polyply/src/graph_utils.py' 2022-10-03T09:17:31,688 adding 'polyply/src/linalg_functions.py' 2022-10-03T09:17:31,690 adding 'polyply/src/load_library.py' 2022-10-03T09:17:31,693 adding 'polyply/src/logging.py' 2022-10-03T09:17:31,697 adding 'polyply/src/map_to_molecule.py' 2022-10-03T09:17:31,702 adding 'polyply/src/meta_molecule.py' 2022-10-03T09:17:31,705 adding 'polyply/src/minimizer.py' 2022-10-03T09:17:31,710 adding 'polyply/src/nonbond_engine.py' 2022-10-03T09:17:31,714 adding 'polyply/src/persistence.py' 2022-10-03T09:17:31,717 adding 'polyply/src/polyply_parser.py' 2022-10-03T09:17:31,720 adding 'polyply/src/processor.py' 2022-10-03T09:17:31,724 adding 'polyply/src/random_walk.py' 2022-10-03T09:17:31,727 adding 'polyply/src/restraints.py' 2022-10-03T09:17:31,731 adding 'polyply/src/simple_seq_parsers.py' 2022-10-03T09:17:31,736 adding 'polyply/src/top_parser.py' 2022-10-03T09:17:31,742 adding 'polyply/src/topology.py' 2022-10-03T09:17:31,745 adding 'polyply/src/virtual_site_builder.py' 2022-10-03T09:17:31,753 adding 'polyply/tests/.coverage' 2022-10-03T09:17:31,756 adding 'polyply/tests/__init__.py' 2022-10-03T09:17:31,759 adding 'polyply/tests/example_fixtures.py' 2022-10-03T09:17:31,762 adding 'polyply/tests/test_annotate_lingads.py' 2022-10-03T09:17:31,768 adding 'polyply/tests/test_apply_links.py' 2022-10-03T09:17:31,771 adding 'polyply/tests/test_backmap.py' 2022-10-03T09:17:31,775 adding 'polyply/tests/test_build_file_parser.py' 2022-10-03T09:17:31,778 adding 'polyply/tests/test_build_system.py' 2022-10-03T09:17:31,781 adding 'polyply/tests/test_ff_parser.py' 2022-10-03T09:17:31,784 adding 'polyply/tests/test_gen_coords.py' 2022-10-03T09:17:31,786 adding 'polyply/tests/test_gen_coords_logic.py' 2022-10-03T09:17:31,789 adding 'polyply/tests/test_gen_params.py' 2022-10-03T09:17:31,792 adding 'polyply/tests/test_gen_seq.py' 2022-10-03T09:17:31,796 adding 'polyply/tests/test_generate_templates.py' 2022-10-03T09:17:31,798 adding 'polyply/tests/test_graph_utils.py' 2022-10-03T09:17:31,802 adding 'polyply/tests/test_itp_files.py' 2022-10-03T09:17:31,806 adding 'polyply/tests/test_lib_files.py' 2022-10-03T09:17:31,809 adding 'polyply/tests/test_linalg.py' 2022-10-03T09:17:31,811 adding 'polyply/tests/test_load_library.py' 2022-10-03T09:17:31,814 adding 'polyply/tests/test_logging.py' 2022-10-03T09:17:31,817 adding 'polyply/tests/test_map_to_molecule.py' 2022-10-03T09:17:31,821 adding 'polyply/tests/test_meta_molecule.py' 2022-10-03T09:17:31,824 adding 'polyply/tests/test_nb_engine.py' 2022-10-03T09:17:31,829 adding 'polyply/tests/test_optimize_geometry.py' 2022-10-03T09:17:31,832 adding 'polyply/tests/test_persistence.py' 2022-10-03T09:17:31,836 adding 'polyply/tests/test_polyply_input.py' 2022-10-03T09:17:31,840 adding 'polyply/tests/test_random_walk.py' 2022-10-03T09:17:31,843 adding 'polyply/tests/test_residue_check.py' 2022-10-03T09:17:31,845 adding 'polyply/tests/test_restraints.py' 2022-10-03T09:17:31,848 adding 'polyply/tests/test_simple_seq_parsers.py' 2022-10-03T09:17:31,852 adding 'polyply/tests/test_top_parser.py' 2022-10-03T09:17:31,857 adding 'polyply/tests/test_topology.py' 2022-10-03T09:17:31,860 adding 'polyply/tests/test_vs_builder.py' 2022-10-03T09:17:31,867 adding 'polyply/tests/test_data/ff/aminoacids.ff' 2022-10-03T09:17:31,873 adding 'polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp' 2022-10-03T09:17:31,875 adding 'polyply/tests/test_data/gen_params/input/PEO.martini.3.itp' 2022-10-03T09:17:31,878 adding 'polyply/tests/test_data/gen_params/input/PPI.ff' 2022-10-03T09:17:31,880 adding 'polyply/tests/test_data/gen_params/input/PPI.json' 2022-10-03T09:17:31,882 adding 'polyply/tests/test_data/gen_params/input/PS.json' 2022-10-03T09:17:31,884 adding 'polyply/tests/test_data/gen_params/input/PS.martini.2.itp' 2022-10-03T09:17:31,887 adding 'polyply/tests/test_data/gen_params/input/removal.ff' 2022-10-03T09:17:31,889 adding 'polyply/tests/test_data/gen_params/input/test.ff' 2022-10-03T09:17:31,891 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.ff' 2022-10-03T09:17:31,893 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.json' 2022-10-03T09:17:31,898 adding 'polyply/tests/test_data/gen_params/output/P3HT_out.itp' 2022-10-03T09:17:31,900 adding 'polyply/tests/test_data/gen_params/output/PEO_out.itp' 2022-10-03T09:17:31,902 adding 'polyply/tests/test_data/gen_params/output/PPI_out.itp' 2022-10-03T09:17:31,905 adding 'polyply/tests/test_data/gen_params/output/PS_out.itp' 2022-10-03T09:17:31,907 adding 'polyply/tests/test_data/gen_params/output/removal.itp' 2022-10-03T09:17:31,910 adding 'polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp' 2022-10-03T09:17:31,912 adding 'polyply/tests/test_data/gen_params/output/test_out.itp' 2022-10-03T09:17:31,915 adding 'polyply/tests/test_data/gen_params/ref/G3.itp' 2022-10-03T09:17:31,919 adding 'polyply/tests/test_data/gen_params/ref/P3HT_10.itp' 2022-10-03T09:17:31,922 adding 'polyply/tests/test_data/gen_params/ref/PEO_10.itp' 2022-10-03T09:17:31,926 adding 'polyply/tests/test_data/gen_params/ref/PS_10.itp' 2022-10-03T09:17:31,928 adding 'polyply/tests/test_data/gen_params/ref/end.itp' 2022-10-03T09:17:31,930 adding 'polyply/tests/test_data/gen_params/ref/removal.itp' 2022-10-03T09:17:31,932 adding 'polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp' 2022-10-03T09:17:31,934 adding 'polyply/tests/test_data/gen_params/ref/test_rev.itp' 2022-10-03T09:17:31,955 adding 'polyply/tests/test_data/gen_seq/input/molecule_0.itp' 2022-10-03T09:17:31,959 adding 'polyply/tests/test_data/gen_seq/output/PEO_PS.json' 2022-10-03T09:17:31,961 adding 'polyply/tests/test_data/gen_seq/output/PPI.json' 2022-10-03T09:17:31,974 adding 'polyply/tests/test_data/gen_seq/output/lysoPEG.json' 2022-10-03T09:17:31,988 adding 'polyply/tests/test_data/gen_seq/output/lyso_PEG.json' 2022-10-03T09:17:31,993 adding 'polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json' 2022-10-03T09:17:31,996 adding 'polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json' 2022-10-03T09:17:31,998 adding 'polyply/tests/test_data/gen_seq/ref/PPI_ref.json' 2022-10-03T09:17:32,004 adding 'polyply/tests/test_data/gen_seq/ref/lyso_PEG.json' 2022-10-03T09:17:32,009 adding 'polyply/tests/test_data/itp/PEO.itp' 2022-10-03T09:17:32,012 adding 'polyply/tests/test_data/json/double_branch.json' 2022-10-03T09:17:32,014 adding 'polyply/tests/test_data/json/fail.json' 2022-10-03T09:17:32,016 adding 'polyply/tests/test_data/json/hyperbranched.json' 2022-10-03T09:17:32,018 adding 'polyply/tests/test_data/json/linear.json' 2022-10-03T09:17:32,021 adding 'polyply/tests/test_data/json/linear_rev.json' 2022-10-03T09:17:32,023 adding 'polyply/tests/test_data/json/single_branch.json' 2022-10-03T09:17:32,030 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp' 2022-10-03T09:17:32,033 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command' 2022-10-03T09:17:32,036 adding 'polyply/tests/test_data/library_tests/2016H66/PE/PE.json' 2022-10-03T09:17:32,039 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp' 2022-10-03T09:17:32,042 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/command' 2022-10-03T09:17:32,045 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json' 2022-10-03T09:17:32,049 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp' 2022-10-03T09:17:32,052 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command' 2022-10-03T09:17:32,055 adding 'polyply/tests/test_data/library_tests/2016H66/PP/PP.json' 2022-10-03T09:17:32,059 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp' 2022-10-03T09:17:32,061 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/command' 2022-10-03T09:17:32,064 adding 'polyply/tests/test_data/library_tests/2016H66/PS/PS.json' 2022-10-03T09:17:32,069 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp' 2022-10-03T09:17:32,072 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/command' 2022-10-03T09:17:32,075 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json' 2022-10-03T09:17:32,079 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp' 2022-10-03T09:17:32,081 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command' 2022-10-03T09:17:32,092 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp' 2022-10-03T09:17:32,095 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command' 2022-10-03T09:17:32,100 adding 'polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp' 2022-10-03T09:17:32,105 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp' 2022-10-03T09:17:32,108 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/command' 2022-10-03T09:17:32,114 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp' 2022-10-03T09:17:32,116 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/command' 2022-10-03T09:17:32,119 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json' 2022-10-03T09:17:32,123 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp' 2022-10-03T09:17:32,125 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command' 2022-10-03T09:17:32,130 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp' 2022-10-03T09:17:32,132 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/command' 2022-10-03T09:17:32,221 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp' 2022-10-03T09:17:32,229 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json' 2022-10-03T09:17:32,233 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command' 2022-10-03T09:17:32,337 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp' 2022-10-03T09:17:32,349 adding 'polyply/tests/test_data/library_tests/martini3/DEX/input.json' 2022-10-03T09:17:32,357 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp' 2022-10-03T09:17:32,360 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/command' 2022-10-03T09:17:32,365 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp' 2022-10-03T09:17:32,367 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command' 2022-10-03T09:17:32,372 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp' 2022-10-03T09:17:32,374 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/command' 2022-10-03T09:17:32,378 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp' 2022-10-03T09:17:32,380 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/command' 2022-10-03T09:17:32,387 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp' 2022-10-03T09:17:32,390 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/command' 2022-10-03T09:17:32,399 adding 'polyply/tests/test_data/library_tests/martini3/PROT/init.itp' 2022-10-03T09:17:32,403 adding 'polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json' 2022-10-03T09:17:32,414 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp' 2022-10-03T09:17:32,417 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/command' 2022-10-03T09:17:32,422 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp' 2022-10-03T09:17:32,424 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/command' 2022-10-03T09:17:32,432 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp' 2022-10-03T09:17:32,435 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command' 2022-10-03T09:17:32,494 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp' 2022-10-03T09:17:32,499 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json' 2022-10-03T09:17:32,564 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp' 2022-10-03T09:17:32,570 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command' 2022-10-03T09:17:32,574 adding 'polyply/tests/test_data/polyply/P3HT.martini.2.itp' 2022-10-03T09:17:32,577 adding 'polyply/tests/test_data/polyply/PDADMA.martini.2.itp' 2022-10-03T09:17:32,579 adding 'polyply/tests/test_data/polyply/PE.martini.2.itp' 2022-10-03T09:17:32,582 adding 'polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp' 2022-10-03T09:17:32,584 adding 'polyply/tests/test_data/polyply/PEO.martini.2.itp' 2022-10-03T09:17:32,586 adding 'polyply/tests/test_data/polyply/PEO.martini.3.itp' 2022-10-03T09:17:32,589 adding 'polyply/tests/test_data/polyply/PP.martini.2.itp' 2022-10-03T09:17:32,591 adding 'polyply/tests/test_data/polyply/PS.martini.2.itp' 2022-10-03T09:17:32,594 adding 'polyply/tests/test_data/polyply/PSS.martini.2.itp' 2022-10-03T09:17:32,598 adding 'polyply/tests/test_data/simple_seq_files/test.fasta' 2022-10-03T09:17:32,600 adding 'polyply/tests/test_data/simple_seq_files/test.ig' 2022-10-03T09:17:32,602 adding 'polyply/tests/test_data/simple_seq_files/test.txt' 2022-10-03T09:17:32,604 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.fasta' 2022-10-03T09:17:32,606 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.ig' 2022-10-03T09:17:32,608 adding 'polyply/tests/test_data/simple_seq_files/test_circle.ig' 2022-10-03T09:17:32,610 adding 'polyply/tests/test_data/simple_seq_files/test_fail.ig' 2022-10-03T09:17:32,614 adding 'polyply/tests/test_data/struc_build/PEO.itp' 2022-10-03T09:17:32,625 adding 'polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp' 2022-10-03T09:17:32,629 adding 'polyply/tests/test_data/struc_build/system.top' 2022-10-03T09:17:32,632 adding 'polyply/tests/test_data/topology_test/W.itp' 2022-10-03T09:17:32,634 adding 'polyply/tests/test_data/topology_test/cog.gro' 2022-10-03T09:17:32,637 adding 'polyply/tests/test_data/topology_test/cog_missing.gro' 2022-10-03T09:17:32,639 adding 'polyply/tests/test_data/topology_test/complete.gro' 2022-10-03T09:17:32,641 adding 'polyply/tests/test_data/topology_test/fail.gro' 2022-10-03T09:17:32,727 adding 'polyply/tests/test_data/topology_test/ffnonbonded.itp' 2022-10-03T09:17:32,738 adding 'polyply/tests/test_data/topology_test/meta.gro' 2022-10-03T09:17:32,779 adding 'polyply/tests/test_data/topology_test/molecule_0.itp' 2022-10-03T09:17:32,784 adding 'polyply/tests/test_data/topology_test/pdb.top' 2022-10-03T09:17:32,786 adding 'polyply/tests/test_data/topology_test/system.top' 2022-10-03T09:17:32,788 adding 'polyply/tests/test_data/topology_test/test.gro' 2022-10-03T09:17:32,791 adding 'polyply/tests/test_data/topology_test/test.itp' 2022-10-03T09:17:32,821 adding 'polyply/tests/test_data/topology_test/test.pdb' 2022-10-03T09:17:32,830 adding 'polyply-1.4.0.data/scripts/polyply' 2022-10-03T09:17:32,835 adding 'polyply-1.4.0.dist-info/AUTHORS' 2022-10-03T09:17:32,839 adding 'polyply-1.4.0.dist-info/LICENSE' 2022-10-03T09:17:32,842 adding 'polyply-1.4.0.dist-info/METADATA' 2022-10-03T09:17:32,844 adding 'polyply-1.4.0.dist-info/WHEEL' 2022-10-03T09:17:32,846 adding 'polyply-1.4.0.dist-info/pbr.json' 2022-10-03T09:17:32,847 adding 'polyply-1.4.0.dist-info/top_level.txt' 2022-10-03T09:17:32,857 adding 'polyply-1.4.0.dist-info/RECORD' 2022-10-03T09:17:32,889 removing build/bdist.linux-armv7l/wheel 2022-10-03T09:17:33,059 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:33,060 ############################ 2022-10-03T09:17:33,060 # Package would be ignored # 2022-10-03T09:17:33,060 ############################ 2022-10-03T09:17:33,061 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' as an importable package, however it is 2022-10-03T09:17:33,061 included in the distribution as "data". 2022-10-03T09:17:33,061 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:33,062 therefore is considered deprecated). 2022-10-03T09:17:33,062 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' is included as a package by using 2022-10-03T09:17:33,063 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:33,063 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:33,064 documentation page. 2022-10-03T09:17:33,065 !! 2022-10-03T09:17:33,065 check.warn(importable) 2022-10-03T09:17:33,066 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:33,067 ############################ 2022-10-03T09:17:33,067 # Package would be ignored # 2022-10-03T09:17:33,067 ############################ 2022-10-03T09:17:33,068 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PS.polyply' as an importable package, however it is 2022-10-03T09:17:33,068 included in the distribution as "data". 2022-10-03T09:17:33,068 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:33,069 therefore is considered deprecated). 2022-10-03T09:17:33,069 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PS.polyply' is included as a package by using 2022-10-03T09:17:33,070 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:33,070 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:33,070 documentation page. 2022-10-03T09:17:33,071 !! 2022-10-03T09:17:33,072 check.warn(importable) 2022-10-03T09:17:33,073 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:33,074 ############################ 2022-10-03T09:17:33,074 # Package would be ignored # 2022-10-03T09:17:33,075 ############################ 2022-10-03T09:17:33,075 Python recognizes 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' as an importable package, however it is 2022-10-03T09:17:33,076 included in the distribution as "data". 2022-10-03T09:17:33,076 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:33,077 therefore is considered deprecated). 2022-10-03T09:17:33,078 Please make sure that 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' is included as a package by using 2022-10-03T09:17:33,078 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:33,079 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:33,079 documentation page. 2022-10-03T09:17:33,080 !! 2022-10-03T09:17:33,081 check.warn(importable) 2022-10-03T09:17:33,082 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:33,083 ############################ 2022-10-03T09:17:33,083 # Package would be ignored # 2022-10-03T09:17:33,084 ############################ 2022-10-03T09:17:33,084 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA' as an importable package, however it is 2022-10-03T09:17:33,085 included in the distribution as "data". 2022-10-03T09:17:33,085 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:33,086 therefore is considered deprecated). 2022-10-03T09:17:33,087 Please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA' is included as a package by using 2022-10-03T09:17:33,087 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:33,088 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:33,088 documentation page. 2022-10-03T09:17:33,090 !! 2022-10-03T09:17:33,090 check.warn(importable) 2022-10-03T09:17:33,091 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:33,092 ############################ 2022-10-03T09:17:33,092 # Package would be ignored # 2022-10-03T09:17:33,093 ############################ 2022-10-03T09:17:33,093 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' as an importable package, however it is 2022-10-03T09:17:33,093 included in the distribution as "data". 2022-10-03T09:17:33,094 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:33,094 therefore is considered deprecated). 2022-10-03T09:17:33,095 Please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' is included as a package by using 2022-10-03T09:17:33,095 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:33,096 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:33,097 documentation page. 2022-10-03T09:17:33,098 !! 2022-10-03T09:17:33,098 check.warn(importable) 2022-10-03T09:17:33,099 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:33,100 ############################ 2022-10-03T09:17:33,100 # Package would be ignored # 2022-10-03T09:17:33,101 ############################ 2022-10-03T09:17:33,101 Python recognizes 'polyply.tests.test_data.polyply' as an importable package, however it is 2022-10-03T09:17:33,102 included in the distribution as "data". 2022-10-03T09:17:33,102 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:33,102 therefore is considered deprecated). 2022-10-03T09:17:33,103 Please make sure that 'polyply.tests.test_data.polyply' is included as a package by using 2022-10-03T09:17:33,104 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:33,104 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:33,105 documentation page. 2022-10-03T09:17:33,106 !! 2022-10-03T09:17:33,107 check.warn(importable) 2022-10-03T09:17:33,107 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:33,109 ############################ 2022-10-03T09:17:33,109 # Package would be ignored # 2022-10-03T09:17:33,109 ############################ 2022-10-03T09:17:33,110 Python recognizes 'polyply.tests.test_data.simple_seq_files' as an importable package, however it is 2022-10-03T09:17:33,110 included in the distribution as "data". 2022-10-03T09:17:33,111 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:33,111 therefore is considered deprecated). 2022-10-03T09:17:33,112 Please make sure that 'polyply.tests.test_data.simple_seq_files' is included as a package by using 2022-10-03T09:17:33,113 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:33,114 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:33,114 documentation page. 2022-10-03T09:17:33,116 !! 2022-10-03T09:17:33,116 check.warn(importable) 2022-10-03T09:17:33,117 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:33,118 ############################ 2022-10-03T09:17:33,118 # Package would be ignored # 2022-10-03T09:17:33,119 ############################ 2022-10-03T09:17:33,119 Python recognizes 'polyply.tests.test_data.struc_build' as an importable package, however it is 2022-10-03T09:17:33,120 included in the distribution as "data". 2022-10-03T09:17:33,120 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:33,120 therefore is considered deprecated). 2022-10-03T09:17:33,121 Please make sure that 'polyply.tests.test_data.struc_build' is included as a package by using 2022-10-03T09:17:33,121 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:33,122 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:33,122 documentation page. 2022-10-03T09:17:33,123 !! 2022-10-03T09:17:33,124 check.warn(importable) 2022-10-03T09:17:33,124 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-10-03T09:17:33,125 ############################ 2022-10-03T09:17:33,126 # Package would be ignored # 2022-10-03T09:17:33,126 ############################ 2022-10-03T09:17:33,126 Python recognizes 'polyply.tests.test_data.topology_test' as an importable package, however it is 2022-10-03T09:17:33,126 included in the distribution as "data". 2022-10-03T09:17:33,127 This behavior is likely to change in future versions of setuptools (and 2022-10-03T09:17:33,127 therefore is considered deprecated). 2022-10-03T09:17:33,128 Please make sure that 'polyply.tests.test_data.topology_test' is included as a package by using 2022-10-03T09:17:33,128 setuptools' `packages` configuration field or the proper discovery methods. 2022-10-03T09:17:33,129 You can read more about "package discovery" and "data files" on setuptools 2022-10-03T09:17:33,129 documentation page. 2022-10-03T09:17:33,131 !! 2022-10-03T09:17:33,132 check.warn(importable) 2022-10-03T09:17:33,346 Building wheel for polyply (pyproject.toml): finished with status 'done' 2022-10-03T09:17:33,393 Created wheel for polyply: filename=polyply-1.4.0-py2.py3-none-any.whl size=625973 sha256=ff46e65cc574f03b487c291c2f039559c7ae9915d832e65d1c2f5fa064c7c4f7 2022-10-03T09:17:33,395 Stored in directory: /tmp/pip-ephem-wheel-cache-nkzf_bvj/wheels/68/b6/d2/c95b0c0d399dd3483357eaf2296720224ef89814fe88384644 2022-10-03T09:17:33,441 Successfully built polyply 2022-10-03T09:17:33,497 Removed build tracker: '/tmp/pip-build-tracker-w6mg1d1v'