2022-10-03T19:23:05,722 Created temporary directory: /tmp/pip-ephem-wheel-cache-kywqu8wl
2022-10-03T19:23:05,727 Created temporary directory: /tmp/pip-build-tracker-10gs6ewn
2022-10-03T19:23:05,728 Initialized build tracking at /tmp/pip-build-tracker-10gs6ewn
2022-10-03T19:23:05,729 Created build tracker: /tmp/pip-build-tracker-10gs6ewn
2022-10-03T19:23:05,729 Entered build tracker: /tmp/pip-build-tracker-10gs6ewn
2022-10-03T19:23:05,730 Created temporary directory: /tmp/pip-wheel-fi103bn_
2022-10-03T19:23:05,803 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-03T19:23:05,812 2 location(s) to search for versions of scib-metrics:
2022-10-03T19:23:05,812 * https://pypi.org/simple/scib-metrics/
2022-10-03T19:23:05,812 * https://www.piwheels.org/simple/scib-metrics/
2022-10-03T19:23:05,813 Fetching project page and analyzing links: https://pypi.org/simple/scib-metrics/
2022-10-03T19:23:05,814 Getting page https://pypi.org/simple/scib-metrics/
2022-10-03T19:23:05,817 Found index url https://pypi.org/simple
2022-10-03T19:23:05,936   Skipping link: No binaries permitted for scib-metrics: https://files.pythonhosted.org/packages/19/3a/450f9acd0a3f46ef7f63b8c8e80ddaa4768a68ab20973f32ba2b157028db/scib_metrics-0.0.2-py3-none-any.whl#sha256=35372423c00264abcbe9c6c71ee44ffaf0a365047dd6329283cd3714f220743b (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8)
2022-10-03T19:23:05,938   Found link https://files.pythonhosted.org/packages/c5/50/28e2f87983f8dd1a576df8c5cc8b9a1f0cdcf0d8011d8acb849eeb9b99c5/scib_metrics-0.0.2.tar.gz#sha256=6db670e164ceeb34e0f65ec52514f9c3f72d6452d9d1693f775b13c1cf062e3d (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8), version: 0.0.2
2022-10-03T19:23:05,939 Fetching project page and analyzing links: https://www.piwheels.org/simple/scib-metrics/
2022-10-03T19:23:05,940 Getting page https://www.piwheels.org/simple/scib-metrics/
2022-10-03T19:23:05,942 Found index url https://www.piwheels.org/simple
2022-10-03T19:23:08,345 Skipping link: not a file: https://www.piwheels.org/simple/scib-metrics/
2022-10-03T19:23:08,346 Skipping link: not a file: https://pypi.org/simple/scib-metrics/
2022-10-03T19:23:08,390 Given no hashes to check 1 links for project 'scib-metrics': discarding no candidates
2022-10-03T19:23:08,432 Collecting scib-metrics==0.0.2
2022-10-03T19:23:08,436   Created temporary directory: /tmp/pip-unpack-no8y51nx
2022-10-03T19:23:08,951   Downloading scib_metrics-0.0.2.tar.gz (21 kB)
2022-10-03T19:23:09,102   Added scib-metrics==0.0.2 from https://files.pythonhosted.org/packages/c5/50/28e2f87983f8dd1a576df8c5cc8b9a1f0cdcf0d8011d8acb849eeb9b99c5/scib_metrics-0.0.2.tar.gz#sha256=6db670e164ceeb34e0f65ec52514f9c3f72d6452d9d1693f775b13c1cf062e3d to build tracker '/tmp/pip-build-tracker-10gs6ewn'
2022-10-03T19:23:09,113   Created temporary directory: /tmp/pip-build-env-dac47til
2022-10-03T19:23:09,134   Created temporary directory: /tmp/pip-standalone-pip-_nbabvl8
2022-10-03T19:23:11,448   Installing build dependencies: started
2022-10-03T19:23:11,450   Running command pip subprocess to install build dependencies
2022-10-03T19:23:22,661   Using pip 22.1.2 from /tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip (python 3.9)
2022-10-03T19:23:24,374   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-03T19:23:28,539   Collecting hatchling
2022-10-03T19:23:31,475     Using cached https://www.piwheels.org/simple/hatchling/hatchling-1.10.0-py3-none-any.whl (72 kB)
2022-10-03T19:23:31,767   Collecting pathspec>=0.10.1
2022-10-03T19:23:36,787     Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.10.1-py3-none-any.whl (27 kB)
2022-10-03T19:23:38,711   Collecting editables>=0.3
2022-10-03T19:23:38,745     WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/editables/editables-0.3-py3-none-any.whl
2022-10-03T19:23:40,948     Using cached https://www.piwheels.org/simple/editables/editables-0.3-py3-none-any.whl (4.7 kB)
2022-10-03T19:23:46,072   Collecting packaging>=21.3
2022-10-03T19:23:46,108     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-10-03T19:23:51,740   Collecting tomli>=1.2.2
2022-10-03T19:23:51,895     WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/tomli/tomli-2.0.1-py3-none-any.whl
2022-10-03T19:23:53,838     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-10-03T19:23:57,854   Collecting pluggy>=1.0.0
2022-10-03T19:24:01,136     Using cached https://www.piwheels.org/simple/pluggy/pluggy-1.0.0-py2.py3-none-any.whl (13 kB)
2022-10-03T19:24:05,936   Collecting pyparsing!=3.0.5,>=2.0.2
2022-10-03T19:24:06,108     WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl
2022-10-03T19:24:09,020     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-10-03T19:24:16,418   Installing collected packages: tomli, pyparsing, pluggy, pathspec, editables, packaging, hatchling
2022-10-03T19:24:18,589     Creating /tmp/pip-build-env-dac47til/overlay/bin
2022-10-03T19:24:18,594     changing mode of /tmp/pip-build-env-dac47til/overlay/bin/hatchling to 755
2022-10-03T19:24:18,647   Successfully installed editables-0.3 hatchling-1.10.0 packaging-21.3 pathspec-0.10.1 pluggy-1.0.0 pyparsing-3.0.9 tomli-2.0.1
2022-10-03T19:24:18,855   --- Logging error ---
2022-10-03T19:24:18,872   Traceback (most recent call last):
2022-10-03T19:24:18,872     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-10-03T19:24:18,873       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-10-03T19:24:18,873     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-10-03T19:24:18,874       extend(render(renderable, render_options))
2022-10-03T19:24:18,875     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-10-03T19:24:18,875       for render_output in iter_render:
2022-10-03T19:24:18,875     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-10-03T19:24:18,876       for line in lines:
2022-10-03T19:24:18,876     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-10-03T19:24:18,876       for segment in segments:
2022-10-03T19:24:18,876     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-10-03T19:24:18,877       renderable = rich_cast(renderable)
2022-10-03T19:24:18,877     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-10-03T19:24:18,877       renderable = cast_method()
2022-10-03T19:24:18,878     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-10-03T19:24:18,878       pip_cmd = get_best_invocation_for_this_pip()
2022-10-03T19:24:18,879     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-10-03T19:24:18,879       if found_executable and os.path.samefile(
2022-10-03T19:24:18,879     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-10-03T19:24:18,880       s2 = os.stat(f2)
2022-10-03T19:24:18,880   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-10-03T19:24:18,880   Call stack:
2022-10-03T19:24:18,884     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-10-03T19:24:18,885       return _run_code(code, main_globals, None,
2022-10-03T19:24:18,885     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-10-03T19:24:18,885       exec(code, run_globals)
2022-10-03T19:24:18,886     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-10-03T19:24:18,886       sys.exit(_main())
2022-10-03T19:24:18,886     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-10-03T19:24:18,887       return command.main(cmd_args)
2022-10-03T19:24:18,887     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-10-03T19:24:18,887       return self._main(args)
2022-10-03T19:24:18,888     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-10-03T19:24:18,888       self.handle_pip_version_check(options)
2022-10-03T19:24:18,889     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-10-03T19:24:18,889       pip_self_version_check(session, options)
2022-10-03T19:24:18,889     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-10-03T19:24:18,889       logger.info("[present-rich] %s", upgrade_prompt)
2022-10-03T19:24:18,890     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-10-03T19:24:18,890       self._log(INFO, msg, args, **kwargs)
2022-10-03T19:24:18,890     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-10-03T19:24:18,891       self.handle(record)
2022-10-03T19:24:18,891     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-10-03T19:24:18,891       self.callHandlers(record)
2022-10-03T19:24:18,891     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-10-03T19:24:18,892       hdlr.handle(record)
2022-10-03T19:24:18,892     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-10-03T19:24:18,892       self.emit(record)
2022-10-03T19:24:18,892     File "/tmp/pip-standalone-pip-_nbabvl8/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-10-03T19:24:18,893       self.handleError(record)
2022-10-03T19:24:18,893   Message: '[present-rich] %s'
2022-10-03T19:24:18,893   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-10-03T19:24:19,389   Installing build dependencies: finished with status 'done'
2022-10-03T19:24:19,418   Getting requirements to build wheel: started
2022-10-03T19:24:19,420   Running command Getting requirements to build wheel
2022-10-03T19:24:20,123   Getting requirements to build wheel: finished with status 'done'
2022-10-03T19:24:20,134   Created temporary directory: /tmp/pip-modern-metadata-mhgcsptr
2022-10-03T19:24:20,140   Preparing metadata (pyproject.toml): started
2022-10-03T19:24:20,142   Running command Preparing metadata (pyproject.toml)
2022-10-03T19:24:21,436   Preparing metadata (pyproject.toml): finished with status 'done'
2022-10-03T19:24:21,453   Source in /tmp/pip-wheel-fi103bn_/scib-metrics_d07a7668d1604876a377997f732ead71 has version 0.0.2, which satisfies requirement scib-metrics==0.0.2 from https://files.pythonhosted.org/packages/c5/50/28e2f87983f8dd1a576df8c5cc8b9a1f0cdcf0d8011d8acb849eeb9b99c5/scib_metrics-0.0.2.tar.gz#sha256=6db670e164ceeb34e0f65ec52514f9c3f72d6452d9d1693f775b13c1cf062e3d
2022-10-03T19:24:21,455   Removed scib-metrics==0.0.2 from https://files.pythonhosted.org/packages/c5/50/28e2f87983f8dd1a576df8c5cc8b9a1f0cdcf0d8011d8acb849eeb9b99c5/scib_metrics-0.0.2.tar.gz#sha256=6db670e164ceeb34e0f65ec52514f9c3f72d6452d9d1693f775b13c1cf062e3d from build tracker '/tmp/pip-build-tracker-10gs6ewn'
2022-10-03T19:24:21,469 Created temporary directory: /tmp/pip-unpack-qdyqerve
2022-10-03T19:24:21,470 Building wheels for collected packages: scib-metrics
2022-10-03T19:24:21,479   Created temporary directory: /tmp/pip-wheel-y2klowcc
2022-10-03T19:24:21,480   Destination directory: /tmp/pip-wheel-y2klowcc
2022-10-03T19:24:21,485   Building wheel for scib-metrics (pyproject.toml): started
2022-10-03T19:24:21,487   Running command Building wheel for scib-metrics (pyproject.toml)
2022-10-03T19:24:22,854   Building wheel for scib-metrics (pyproject.toml): finished with status 'done'
2022-10-03T19:24:22,866   Created wheel for scib-metrics: filename=scib_metrics-0.0.2-py3-none-any.whl size=12031 sha256=35372423c00264abcbe9c6c71ee44ffaf0a365047dd6329283cd3714f220743b
2022-10-03T19:24:22,868   Stored in directory: /tmp/pip-ephem-wheel-cache-kywqu8wl/wheels/37/87/79/8cad08586cf9884066b9f5219c407ea42e101a10b7bbf1ff0a
2022-10-03T19:24:22,891 Successfully built scib-metrics
2022-10-03T19:24:22,899 Removed build tracker: '/tmp/pip-build-tracker-10gs6ewn'