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https://www.piwheels.org/simple/ispyb/ispyb-0.11-py3-none-any.whl#sha256=5a7c5669c5db100529ff670af9b7638874a67d57de2f14c275341d479e796487 (from https://www.piwheels.org/simple/ispyb/) 2022-10-05T10:37:04,867 Skipping link: No binaries permitted for ispyb: https://www.piwheels.org/simple/ispyb/ispyb-0.10-py3-none-any.whl#sha256=b2aae07c0afc48e0d80fe0ef2a8766467c1e646fefa8f0c508cc18eef4dfdf7f (from https://www.piwheels.org/simple/ispyb/) 2022-10-05T10:37:04,867 Skipping link: No binaries permitted for ispyb: https://www.piwheels.org/simple/ispyb/ispyb-0.8-py3-none-any.whl#sha256=cd3f433cbad4d1dbd5c42609ce6873c11e4dd7a00a272ed8afe3243f0fcc802c (from https://www.piwheels.org/simple/ispyb/) 2022-10-05T10:37:04,868 Skipping link: No binaries permitted for ispyb: https://www.piwheels.org/simple/ispyb/ispyb-0.7-py3-none-any.whl#sha256=f3052aa2679c1b7ed69e108d111ed389df17414d376e7c4135e4dcabb385f784 (from https://www.piwheels.org/simple/ispyb/) 2022-10-05T10:37:04,868 Skipping link: No binaries permitted for ispyb: https://www.piwheels.org/simple/ispyb/ispyb-0.5-py3-none-any.whl#sha256=1a8ef59d1fad3edfd8cdf7211e6f31297558f573c254eb4f3ba97ab3982b79d4 (from https://www.piwheels.org/simple/ispyb/) 2022-10-05T10:37:04,869 Skipping link: No binaries permitted for ispyb: https://www.piwheels.org/simple/ispyb/ispyb-0.4-py3-none-any.whl#sha256=9ef896f5ca835fd0ca2570910eddb6a8a51ede4c44fb0b52e463b0c8fb01dcaf (from https://www.piwheels.org/simple/ispyb/) 2022-10-05T10:37:04,869 Skipping link: not a file: https://www.piwheels.org/simple/ispyb/ 2022-10-05T10:37:04,870 Skipping link: not a file: https://pypi.org/simple/ispyb/ 2022-10-05T10:37:04,929 Given no hashes to check 1 links for project 'ispyb': discarding no candidates 2022-10-05T10:37:04,962 Collecting ispyb==6.12.1 2022-10-05T10:37:04,967 Created temporary directory: /tmp/pip-unpack-r5yu27yd 2022-10-05T10:37:05,507 Downloading ispyb-6.12.1.tar.gz (81 kB) 2022-10-05T10:37:05,890 Added ispyb==6.12.1 from https://files.pythonhosted.org/packages/85/69/693149e41328a2ba07fb558f2ab06d628b941d253df131527654e57277dc/ispyb-6.12.1.tar.gz#sha256=7f6a77e12d6154c74f512fe27f61fde7bde50fb5cdb361682860f3bec11456b8 to build tracker '/tmp/pip-build-tracker-ywpqh_rj' 2022-10-05T10:37:05,900 Created temporary directory: /tmp/pip-build-env-z2zqz30b 2022-10-05T10:37:05,914 Created temporary directory: /tmp/pip-standalone-pip-__cb_2d8 2022-10-05T10:37:08,267 Installing build dependencies: started 2022-10-05T10:37:08,270 Running command pip subprocess to install build dependencies 2022-10-05T10:37:17,982 Using pip 22.1.2 from /tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip (python 3.7) 2022-10-05T10:37:19,917 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-05T10:37:26,813 Collecting setuptools>=40.8.0 2022-10-05T10:37:27,136 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.4.1-py3-none-any.whl (1.2 MB) 2022-10-05T10:37:27,829 Collecting wheel 2022-10-05T10:37:27,863 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-10-05T10:37:40,116 Installing collected packages: wheel, setuptools 2022-10-05T10:37:40,394 Creating /tmp/pip-build-env-z2zqz30b/overlay/bin 2022-10-05T10:37:40,398 changing mode of /tmp/pip-build-env-z2zqz30b/overlay/bin/wheel to 755 2022-10-05T10:37:45,561 Successfully installed setuptools-65.4.1 wheel-0.37.1 2022-10-05T10:37:45,815 --- Logging error --- 2022-10-05T10:37:45,815 Traceback (most recent call last): 2022-10-05T10:37:45,816 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-10-05T10:37:45,816 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-10-05T10:37:45,817 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-10-05T10:37:45,817 extend(render(renderable, render_options)) 2022-10-05T10:37:45,817 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-10-05T10:37:45,818 for render_output in iter_render: 2022-10-05T10:37:45,818 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-10-05T10:37:45,819 for line in lines: 2022-10-05T10:37:45,819 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-10-05T10:37:45,819 for segment in segments: 2022-10-05T10:37:45,820 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-10-05T10:37:45,820 renderable = rich_cast(renderable) 2022-10-05T10:37:45,820 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-10-05T10:37:45,821 renderable = cast_method() 2022-10-05T10:37:45,821 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-10-05T10:37:45,821 pip_cmd = get_best_invocation_for_this_pip() 2022-10-05T10:37:45,822 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 60, in get_best_invocation_for_this_pip 2022-10-05T10:37:45,822 os.path.join(binary_prefix, exe_name), 2022-10-05T10:37:45,822 File "/usr/lib/python3.7/genericpath.py", line 97, in samefile 2022-10-05T10:37:45,823 s2 = os.stat(f2) 2022-10-05T10:37:45,823 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.7' 2022-10-05T10:37:45,823 Call stack: 2022-10-05T10:37:45,824 File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main 2022-10-05T10:37:45,824 "__main__", mod_spec) 2022-10-05T10:37:45,824 File "/usr/lib/python3.7/runpy.py", line 85, in _run_code 2022-10-05T10:37:45,825 exec(code, run_globals) 2022-10-05T10:37:45,825 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/__main__.py", line 31, in 2022-10-05T10:37:45,825 sys.exit(_main()) 2022-10-05T10:37:45,826 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-10-05T10:37:45,826 return command.main(cmd_args) 2022-10-05T10:37:45,826 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-10-05T10:37:45,827 return self._main(args) 2022-10-05T10:37:45,827 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-10-05T10:37:45,827 self.handle_pip_version_check(options) 2022-10-05T10:37:45,828 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-10-05T10:37:45,828 pip_self_version_check(session, options) 2022-10-05T10:37:45,829 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-10-05T10:37:45,829 logger.info("[present-rich] %s", upgrade_prompt) 2022-10-05T10:37:45,829 File "/usr/lib/python3.7/logging/__init__.py", line 1383, in info 2022-10-05T10:37:45,830 self._log(INFO, msg, args, **kwargs) 2022-10-05T10:37:45,830 File "/usr/lib/python3.7/logging/__init__.py", line 1519, in _log 2022-10-05T10:37:45,830 self.handle(record) 2022-10-05T10:37:45,831 File "/usr/lib/python3.7/logging/__init__.py", line 1529, in handle 2022-10-05T10:37:45,831 self.callHandlers(record) 2022-10-05T10:37:45,831 File "/usr/lib/python3.7/logging/__init__.py", line 1591, in callHandlers 2022-10-05T10:37:45,832 hdlr.handle(record) 2022-10-05T10:37:45,832 File "/usr/lib/python3.7/logging/__init__.py", line 905, in handle 2022-10-05T10:37:45,832 self.emit(record) 2022-10-05T10:37:45,833 File "/tmp/pip-standalone-pip-__cb_2d8/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-10-05T10:37:45,833 self.handleError(record) 2022-10-05T10:37:45,834 Message: '[present-rich] %s' 2022-10-05T10:37:45,834 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-10-05T10:37:46,315 Installing build dependencies: finished with status 'done' 2022-10-05T10:37:46,344 Getting requirements to build wheel: started 2022-10-05T10:37:46,346 Running command Getting requirements to build wheel 2022-10-05T10:37:51,287 running egg_info 2022-10-05T10:37:51,926 writing src/ispyb.egg-info/PKG-INFO 2022-10-05T10:37:52,529 writing dependency_links to src/ispyb.egg-info/dependency_links.txt 2022-10-05T10:37:54,330 writing entry points to src/ispyb.egg-info/entry_points.txt 2022-10-05T10:37:55,529 writing requirements to src/ispyb.egg-info/requires.txt 2022-10-05T10:37:56,130 writing top-level names to src/ispyb.egg-info/top_level.txt 2022-10-05T10:37:56,958 reading manifest file 'src/ispyb.egg-info/SOURCES.txt' 2022-10-05T10:37:56,965 reading manifest template 'MANIFEST.in' 2022-10-05T10:37:56,980 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-10-05T10:37:56,980 % (opt, underscore_opt) 2022-10-05T10:37:56,980 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead 2022-10-05T10:37:56,981 % (opt, underscore_opt) 2022-10-05T10:37:56,981 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-10-05T10:37:56,982 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-10-05T10:37:56,982 adding license file 'LICENSE.md' 2022-10-05T10:37:56,985 writing manifest file 'src/ispyb.egg-info/SOURCES.txt' 2022-10-05T10:37:57,210 Getting requirements to build wheel: finished with status 'done' 2022-10-05T10:37:57,232 Created temporary directory: /tmp/pip-modern-metadata-8z_usgdr 2022-10-05T10:37:57,240 Preparing metadata (pyproject.toml): started 2022-10-05T10:37:57,242 Running command Preparing metadata (pyproject.toml) 2022-10-05T10:38:01,925 running dist_info 2022-10-05T10:38:02,595 creating /tmp/pip-modern-metadata-8z_usgdr/ispyb.egg-info 2022-10-05T10:38:03,234 writing /tmp/pip-modern-metadata-8z_usgdr/ispyb.egg-info/PKG-INFO 2022-10-05T10:38:03,837 writing dependency_links to /tmp/pip-modern-metadata-8z_usgdr/ispyb.egg-info/dependency_links.txt 2022-10-05T10:38:05,642 writing entry points to /tmp/pip-modern-metadata-8z_usgdr/ispyb.egg-info/entry_points.txt 2022-10-05T10:38:06,846 writing requirements to /tmp/pip-modern-metadata-8z_usgdr/ispyb.egg-info/requires.txt 2022-10-05T10:38:07,452 writing top-level names to /tmp/pip-modern-metadata-8z_usgdr/ispyb.egg-info/top_level.txt 2022-10-05T10:38:07,455 writing manifest file '/tmp/pip-modern-metadata-8z_usgdr/ispyb.egg-info/SOURCES.txt' 2022-10-05T10:38:08,250 reading manifest file '/tmp/pip-modern-metadata-8z_usgdr/ispyb.egg-info/SOURCES.txt' 2022-10-05T10:38:08,254 reading manifest template 'MANIFEST.in' 2022-10-05T10:38:08,259 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-10-05T10:38:08,259 % (opt, underscore_opt) 2022-10-05T10:38:08,260 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead 2022-10-05T10:38:08,260 % (opt, underscore_opt) 2022-10-05T10:38:08,261 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-10-05T10:38:08,261 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-10-05T10:38:08,262 adding license file 'LICENSE.md' 2022-10-05T10:38:08,270 writing manifest file '/tmp/pip-modern-metadata-8z_usgdr/ispyb.egg-info/SOURCES.txt' 2022-10-05T10:38:08,273 creating '/tmp/pip-modern-metadata-8z_usgdr/ispyb-6.12.1.dist-info' 2022-10-05T10:38:08,499 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") 2022-10-05T10:38:08,740 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-05T10:38:08,755 Source in /tmp/pip-wheel-54a8n6g0/ispyb_b1227ff9c55d4c00bff22f46e0f40696 has version 6.12.1, which satisfies requirement ispyb==6.12.1 from https://files.pythonhosted.org/packages/85/69/693149e41328a2ba07fb558f2ab06d628b941d253df131527654e57277dc/ispyb-6.12.1.tar.gz#sha256=7f6a77e12d6154c74f512fe27f61fde7bde50fb5cdb361682860f3bec11456b8 2022-10-05T10:38:08,757 Removed ispyb==6.12.1 from https://files.pythonhosted.org/packages/85/69/693149e41328a2ba07fb558f2ab06d628b941d253df131527654e57277dc/ispyb-6.12.1.tar.gz#sha256=7f6a77e12d6154c74f512fe27f61fde7bde50fb5cdb361682860f3bec11456b8 from build tracker '/tmp/pip-build-tracker-ywpqh_rj' 2022-10-05T10:38:08,770 Created temporary directory: /tmp/pip-unpack-wyaat19y 2022-10-05T10:38:08,771 Building wheels for collected packages: ispyb 2022-10-05T10:38:08,781 Created temporary directory: /tmp/pip-wheel-h37nt6g0 2022-10-05T10:38:08,782 Destination directory: /tmp/pip-wheel-h37nt6g0 2022-10-05T10:38:08,787 Building wheel for ispyb (pyproject.toml): started 2022-10-05T10:38:08,789 Running command Building wheel for ispyb (pyproject.toml) 2022-10-05T10:38:12,937 running bdist_wheel 2022-10-05T10:38:14,190 running build 2022-10-05T10:38:14,190 running build_py 2022-10-05T10:38:14,842 creating build 2022-10-05T10:38:14,843 creating build/lib 2022-10-05T10:38:14,844 creating build/lib/ispyb 2022-10-05T10:38:14,847 copying src/ispyb/xmltools.py -> build/lib/ispyb 2022-10-05T10:38:14,852 copying src/ispyb/__init__.py -> build/lib/ispyb 2022-10-05T10:38:14,856 copying src/ispyb/factory.py -> build/lib/ispyb 2022-10-05T10:38:14,860 copying src/ispyb/strictordereddict.py -> build/lib/ispyb 2022-10-05T10:38:14,865 creating build/lib/ispyb/cli 2022-10-05T10:38:14,866 copying src/ispyb/cli/__init__.py -> build/lib/ispyb/cli 2022-10-05T10:38:14,870 copying src/ispyb/cli/job.py -> build/lib/ispyb/cli 2022-10-05T10:38:14,875 copying src/ispyb/cli/last_data_collections_on.py -> build/lib/ispyb/cli 2022-10-05T10:38:14,881 creating build/lib/ispyb/ws 2022-10-05T10:38:14,882 copying src/ispyb/ws/__init__.py -> build/lib/ispyb/ws 2022-10-05T10:38:14,886 creating build/lib/ispyb/sqlalchemy 2022-10-05T10:38:14,888 copying src/ispyb/sqlalchemy/_auto_db_schema.py -> build/lib/ispyb/sqlalchemy 2022-10-05T10:38:14,908 copying src/ispyb/sqlalchemy/__init__.py -> build/lib/ispyb/sqlalchemy 2022-10-05T10:38:14,914 creating build/lib/ispyb/sp 2022-10-05T10:38:14,916 copying src/ispyb/sp/mxacquisition.py -> build/lib/ispyb/sp 2022-10-05T10:38:14,921 copying src/ispyb/sp/core.py -> build/lib/ispyb/sp 2022-10-05T10:38:14,926 copying src/ispyb/sp/emacquisition.py -> build/lib/ispyb/sp 2022-10-05T10:38:14,931 copying src/ispyb/sp/xtalimaging.py -> build/lib/ispyb/sp 2022-10-05T10:38:14,935 copying src/ispyb/sp/acquisition.py -> build/lib/ispyb/sp 2022-10-05T10:38:14,940 copying src/ispyb/sp/shipping.py -> build/lib/ispyb/sp 2022-10-05T10:38:14,943 copying src/ispyb/sp/__init__.py -> build/lib/ispyb/sp 2022-10-05T10:38:14,946 copying src/ispyb/sp/mxscreening.py -> build/lib/ispyb/sp 2022-10-05T10:38:14,951 copying src/ispyb/sp/mxprocessing.py -> build/lib/ispyb/sp 2022-10-05T10:38:14,957 creating build/lib/ispyb/connector 2022-10-05T10:38:14,958 copying src/ispyb/connector/__init__.py -> build/lib/ispyb/connector 2022-10-05T10:38:14,964 creating build/lib/ispyb/model 2022-10-05T10:38:14,966 copying src/ispyb/model/datacollection.py -> build/lib/ispyb/model 2022-10-05T10:38:14,971 copying src/ispyb/model/sample.py -> build/lib/ispyb/model 2022-10-05T10:38:14,975 copying src/ispyb/model/integration.py -> build/lib/ispyb/model 2022-10-05T10:38:14,979 copying src/ispyb/model/container.py -> build/lib/ispyb/model 2022-10-05T10:38:14,983 copying src/ispyb/model/samplegroup.py -> build/lib/ispyb/model 2022-10-05T10:38:14,987 copying src/ispyb/model/screening.py -> build/lib/ispyb/model 2022-10-05T10:38:14,991 copying src/ispyb/model/__init__.py -> build/lib/ispyb/model 2022-10-05T10:38:14,995 copying src/ispyb/model/__future__.py -> build/lib/ispyb/model 2022-10-05T10:38:15,001 copying src/ispyb/model/pdb.py -> build/lib/ispyb/model 2022-10-05T10:38:15,004 copying src/ispyb/model/processingjob.py -> build/lib/ispyb/model 2022-10-05T10:38:15,009 copying src/ispyb/model/interface.py -> build/lib/ispyb/model 2022-10-05T10:38:15,012 copying src/ispyb/model/detector.py -> build/lib/ispyb/model 2022-10-05T10:38:15,016 copying src/ispyb/model/image_quality_indicators.py -> build/lib/ispyb/model 2022-10-05T10:38:15,020 copying src/ispyb/model/gridinfo.py -> build/lib/ispyb/model 2022-10-05T10:38:15,023 copying src/ispyb/model/processingprogram.py -> build/lib/ispyb/model 2022-10-05T10:38:15,028 creating build/lib/ispyb/interface 2022-10-05T10:38:15,030 copying src/ispyb/interface/core.py -> build/lib/ispyb/interface 2022-10-05T10:38:15,034 copying src/ispyb/interface/connection.py -> build/lib/ispyb/interface 2022-10-05T10:38:15,037 copying src/ispyb/interface/acquisition.py -> build/lib/ispyb/interface 2022-10-05T10:38:15,040 copying src/ispyb/interface/shipping.py -> build/lib/ispyb/interface 2022-10-05T10:38:15,044 copying src/ispyb/interface/screening.py -> build/lib/ispyb/interface 2022-10-05T10:38:15,047 copying src/ispyb/interface/__init__.py -> build/lib/ispyb/interface 2022-10-05T10:38:15,050 copying src/ispyb/interface/factory.py -> build/lib/ispyb/interface 2022-10-05T10:38:15,053 copying src/ispyb/interface/processing.py -> build/lib/ispyb/interface 2022-10-05T10:38:15,057 copying src/ispyb/interface/dataarea.py -> build/lib/ispyb/interface 2022-10-05T10:38:15,061 creating build/lib/ispyb/connector/ws 2022-10-05T10:38:15,063 copying src/ispyb/connector/ws/main.py -> build/lib/ispyb/connector/ws 2022-10-05T10:38:15,066 copying src/ispyb/connector/ws/__init__.py -> build/lib/ispyb/connector/ws 2022-10-05T10:38:15,070 creating build/lib/ispyb/connector/mysqlsp 2022-10-05T10:38:15,072 copying src/ispyb/connector/mysqlsp/main.py -> build/lib/ispyb/connector/mysqlsp 2022-10-05T10:38:15,076 copying src/ispyb/connector/mysqlsp/__init__.py -> build/lib/ispyb/connector/mysqlsp 2022-10-05T10:38:15,078 running egg_info 2022-10-05T10:38:16,369 writing src/ispyb.egg-info/PKG-INFO 2022-10-05T10:38:17,023 writing dependency_links to src/ispyb.egg-info/dependency_links.txt 2022-10-05T10:38:18,815 writing entry points to src/ispyb.egg-info/entry_points.txt 2022-10-05T10:38:20,022 writing requirements to src/ispyb.egg-info/requires.txt 2022-10-05T10:38:20,630 writing top-level names to src/ispyb.egg-info/top_level.txt 2022-10-05T10:38:20,690 reading manifest file 'src/ispyb.egg-info/SOURCES.txt' 2022-10-05T10:38:20,696 reading manifest template 'MANIFEST.in' 2022-10-05T10:38:20,700 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-10-05T10:38:20,700 % (opt, underscore_opt) 2022-10-05T10:38:20,701 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead 2022-10-05T10:38:20,701 % (opt, underscore_opt) 2022-10-05T10:38:20,702 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-10-05T10:38:20,702 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-10-05T10:38:20,702 adding license file 'LICENSE.md' 2022-10-05T10:38:20,712 writing manifest file 'src/ispyb.egg-info/SOURCES.txt' 2022-10-05T10:38:20,732 running build_scripts 2022-10-05T10:38:20,733 creating build/scripts-3.7 2022-10-05T10:38:20,735 copying and adjusting bin/dimple2ispyb.py -> build/scripts-3.7 2022-10-05T10:38:20,739 copying and adjusting bin/mxdatareduction2ispyb.py -> build/scripts-3.7 2022-10-05T10:38:20,741 changing mode of build/scripts-3.7/dimple2ispyb.py from 644 to 755 2022-10-05T10:38:20,742 changing mode of build/scripts-3.7/mxdatareduction2ispyb.py from 644 to 755 2022-10-05T10:38:22,026 installing to build/bdist.linux-armv7l/wheel 2022-10-05T10:38:22,026 running install 2022-10-05T10:38:22,088 running install_lib 2022-10-05T10:38:22,730 creating build/bdist.linux-armv7l 2022-10-05T10:38:22,731 creating build/bdist.linux-armv7l/wheel 2022-10-05T10:38:22,735 creating build/bdist.linux-armv7l/wheel/ispyb 2022-10-05T10:38:22,738 creating build/bdist.linux-armv7l/wheel/ispyb/cli 2022-10-05T10:38:22,740 copying build/lib/ispyb/cli/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/cli 2022-10-05T10:38:22,743 copying build/lib/ispyb/cli/job.py -> build/bdist.linux-armv7l/wheel/ispyb/cli 2022-10-05T10:38:22,748 copying build/lib/ispyb/cli/last_data_collections_on.py -> build/bdist.linux-armv7l/wheel/ispyb/cli 2022-10-05T10:38:22,753 creating build/bdist.linux-armv7l/wheel/ispyb/ws 2022-10-05T10:38:22,754 copying build/lib/ispyb/ws/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/ws 2022-10-05T10:38:22,758 creating build/bdist.linux-armv7l/wheel/ispyb/sqlalchemy 2022-10-05T10:38:22,759 copying build/lib/ispyb/sqlalchemy/_auto_db_schema.py -> build/bdist.linux-armv7l/wheel/ispyb/sqlalchemy 2022-10-05T10:38:22,777 copying build/lib/ispyb/sqlalchemy/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/sqlalchemy 2022-10-05T10:38:22,783 creating build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,785 copying build/lib/ispyb/sp/mxacquisition.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,790 copying build/lib/ispyb/sp/core.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,794 copying build/lib/ispyb/sp/emacquisition.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,799 copying build/lib/ispyb/sp/xtalimaging.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,803 copying build/lib/ispyb/sp/acquisition.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,807 copying build/lib/ispyb/sp/shipping.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,810 copying build/lib/ispyb/sp/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,813 copying build/lib/ispyb/sp/mxscreening.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,817 copying build/lib/ispyb/sp/mxprocessing.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-10-05T10:38:22,822 copying build/lib/ispyb/xmltools.py -> build/bdist.linux-armv7l/wheel/ispyb 2022-10-05T10:38:22,827 copying build/lib/ispyb/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb 2022-10-05T10:38:22,830 copying build/lib/ispyb/factory.py -> build/bdist.linux-armv7l/wheel/ispyb 2022-10-05T10:38:22,835 creating build/bdist.linux-armv7l/wheel/ispyb/connector 2022-10-05T10:38:22,837 creating build/bdist.linux-armv7l/wheel/ispyb/connector/ws 2022-10-05T10:38:22,839 copying build/lib/ispyb/connector/ws/main.py -> build/bdist.linux-armv7l/wheel/ispyb/connector/ws 2022-10-05T10:38:22,843 copying build/lib/ispyb/connector/ws/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/connector/ws 2022-10-05T10:38:22,845 copying build/lib/ispyb/connector/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/connector 2022-10-05T10:38:22,849 creating build/bdist.linux-armv7l/wheel/ispyb/connector/mysqlsp 2022-10-05T10:38:22,851 copying build/lib/ispyb/connector/mysqlsp/main.py -> build/bdist.linux-armv7l/wheel/ispyb/connector/mysqlsp 2022-10-05T10:38:22,855 copying build/lib/ispyb/connector/mysqlsp/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/connector/mysqlsp 2022-10-05T10:38:22,858 copying build/lib/ispyb/strictordereddict.py -> build/bdist.linux-armv7l/wheel/ispyb 2022-10-05T10:38:22,863 creating build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,864 copying build/lib/ispyb/model/datacollection.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,869 copying build/lib/ispyb/model/sample.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,872 copying build/lib/ispyb/model/integration.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,877 copying build/lib/ispyb/model/container.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,880 copying build/lib/ispyb/model/samplegroup.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,884 copying build/lib/ispyb/model/screening.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,889 copying build/lib/ispyb/model/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,892 copying build/lib/ispyb/model/__future__.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,897 copying build/lib/ispyb/model/pdb.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,900 copying build/lib/ispyb/model/processingjob.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,905 copying build/lib/ispyb/model/interface.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,908 copying build/lib/ispyb/model/detector.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,912 copying build/lib/ispyb/model/image_quality_indicators.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,915 copying build/lib/ispyb/model/gridinfo.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,919 copying build/lib/ispyb/model/processingprogram.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-10-05T10:38:22,923 creating build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,925 copying build/lib/ispyb/interface/core.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,928 copying build/lib/ispyb/interface/connection.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,932 copying build/lib/ispyb/interface/acquisition.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,935 copying build/lib/ispyb/interface/shipping.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,938 copying build/lib/ispyb/interface/screening.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,941 copying build/lib/ispyb/interface/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,944 copying build/lib/ispyb/interface/factory.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,947 copying build/lib/ispyb/interface/processing.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,950 copying build/lib/ispyb/interface/dataarea.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-10-05T10:38:22,953 running install_egg_info 2022-10-05T10:38:23,597 Copying src/ispyb.egg-info to build/bdist.linux-armv7l/wheel/ispyb-6.12.1-py3.7.egg-info 2022-10-05T10:38:23,624 running install_scripts 2022-10-05T10:38:23,742 creating build/bdist.linux-armv7l/wheel/ispyb-6.12.1.data 2022-10-05T10:38:23,743 creating build/bdist.linux-armv7l/wheel/ispyb-6.12.1.data/scripts 2022-10-05T10:38:23,745 copying build/scripts-3.7/mxdatareduction2ispyb.py -> build/bdist.linux-armv7l/wheel/ispyb-6.12.1.data/scripts 2022-10-05T10:38:23,749 copying build/scripts-3.7/dimple2ispyb.py -> build/bdist.linux-armv7l/wheel/ispyb-6.12.1.data/scripts 2022-10-05T10:38:23,753 changing mode of build/bdist.linux-armv7l/wheel/ispyb-6.12.1.data/scripts/mxdatareduction2ispyb.py to 755 2022-10-05T10:38:23,754 changing mode of build/bdist.linux-armv7l/wheel/ispyb-6.12.1.data/scripts/dimple2ispyb.py to 755 2022-10-05T10:38:23,798 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") 2022-10-05T10:38:23,807 creating build/bdist.linux-armv7l/wheel/ispyb-6.12.1.dist-info/WHEEL 2022-10-05T10:38:23,812 creating '/tmp/pip-wheel-h37nt6g0/tmp3eitdp1a/ispyb-6.12.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-05T10:38:23,817 adding 'ispyb/__init__.py' 2022-10-05T10:38:23,821 adding 'ispyb/factory.py' 2022-10-05T10:38:23,823 adding 'ispyb/strictordereddict.py' 2022-10-05T10:38:23,827 adding 'ispyb/xmltools.py' 2022-10-05T10:38:23,830 adding 'ispyb/cli/__init__.py' 2022-10-05T10:38:23,835 adding 'ispyb/cli/job.py' 2022-10-05T10:38:23,838 adding 'ispyb/cli/last_data_collections_on.py' 2022-10-05T10:38:23,842 adding 'ispyb/connector/__init__.py' 2022-10-05T10:38:23,845 adding 'ispyb/connector/mysqlsp/__init__.py' 2022-10-05T10:38:23,847 adding 'ispyb/connector/mysqlsp/main.py' 2022-10-05T10:38:23,851 adding 'ispyb/connector/ws/__init__.py' 2022-10-05T10:38:23,853 adding 'ispyb/connector/ws/main.py' 2022-10-05T10:38:23,857 adding 'ispyb/interface/__init__.py' 2022-10-05T10:38:23,859 adding 'ispyb/interface/acquisition.py' 2022-10-05T10:38:23,861 adding 'ispyb/interface/connection.py' 2022-10-05T10:38:23,863 adding 'ispyb/interface/core.py' 2022-10-05T10:38:23,866 adding 'ispyb/interface/dataarea.py' 2022-10-05T10:38:23,868 adding 'ispyb/interface/factory.py' 2022-10-05T10:38:23,870 adding 'ispyb/interface/processing.py' 2022-10-05T10:38:23,872 adding 'ispyb/interface/screening.py' 2022-10-05T10:38:23,874 adding 'ispyb/interface/shipping.py' 2022-10-05T10:38:23,880 adding 'ispyb/model/__future__.py' 2022-10-05T10:38:23,884 adding 'ispyb/model/__init__.py' 2022-10-05T10:38:23,887 adding 'ispyb/model/container.py' 2022-10-05T10:38:23,892 adding 'ispyb/model/datacollection.py' 2022-10-05T10:38:23,895 adding 'ispyb/model/detector.py' 2022-10-05T10:38:23,897 adding 'ispyb/model/gridinfo.py' 2022-10-05T10:38:23,900 adding 'ispyb/model/image_quality_indicators.py' 2022-10-05T10:38:23,903 adding 'ispyb/model/integration.py' 2022-10-05T10:38:23,905 adding 'ispyb/model/interface.py' 2022-10-05T10:38:23,908 adding 'ispyb/model/pdb.py' 2022-10-05T10:38:23,912 adding 'ispyb/model/processingjob.py' 2022-10-05T10:38:23,915 adding 'ispyb/model/processingprogram.py' 2022-10-05T10:38:23,917 adding 'ispyb/model/sample.py' 2022-10-05T10:38:23,920 adding 'ispyb/model/samplegroup.py' 2022-10-05T10:38:23,924 adding 'ispyb/model/screening.py' 2022-10-05T10:38:23,928 adding 'ispyb/sp/__init__.py' 2022-10-05T10:38:23,931 adding 'ispyb/sp/acquisition.py' 2022-10-05T10:38:23,935 adding 'ispyb/sp/core.py' 2022-10-05T10:38:23,938 adding 'ispyb/sp/emacquisition.py' 2022-10-05T10:38:23,942 adding 'ispyb/sp/mxacquisition.py' 2022-10-05T10:38:23,946 adding 'ispyb/sp/mxprocessing.py' 2022-10-05T10:38:23,949 adding 'ispyb/sp/mxscreening.py' 2022-10-05T10:38:23,951 adding 'ispyb/sp/shipping.py' 2022-10-05T10:38:23,954 adding 'ispyb/sp/xtalimaging.py' 2022-10-05T10:38:23,958 adding 'ispyb/sqlalchemy/__init__.py' 2022-10-05T10:38:24,003 adding 'ispyb/sqlalchemy/_auto_db_schema.py' 2022-10-05T10:38:24,011 adding 'ispyb/ws/__init__.py' 2022-10-05T10:38:24,016 adding 'ispyb-6.12.1.data/scripts/dimple2ispyb.py' 2022-10-05T10:38:24,019 adding 'ispyb-6.12.1.data/scripts/mxdatareduction2ispyb.py' 2022-10-05T10:38:24,025 adding 'ispyb-6.12.1.dist-info/LICENSE.md' 2022-10-05T10:38:24,028 adding 'ispyb-6.12.1.dist-info/METADATA' 2022-10-05T10:38:24,030 adding 'ispyb-6.12.1.dist-info/WHEEL' 2022-10-05T10:38:24,031 adding 'ispyb-6.12.1.dist-info/entry_points.txt' 2022-10-05T10:38:24,033 adding 'ispyb-6.12.1.dist-info/top_level.txt' 2022-10-05T10:38:24,036 adding 'ispyb-6.12.1.dist-info/RECORD' 2022-10-05T10:38:24,044 removing build/bdist.linux-armv7l/wheel 2022-10-05T10:38:24,347 Building wheel for ispyb (pyproject.toml): finished with status 'done' 2022-10-05T10:38:24,367 Created wheel for ispyb: filename=ispyb-6.12.1-py3-none-any.whl size=95252 sha256=bff13d5c96e485d9a5db7c6ab3e71756ae0530afaadfeec8e3a9e99760423679 2022-10-05T10:38:24,369 Stored in directory: /tmp/pip-ephem-wheel-cache-5he70ckq/wheels/2c/cb/37/fe43e0aecef7e9b3bdadc83fe2ee8edc94a2326ece9bcb6635 2022-10-05T10:38:24,397 Successfully built ispyb 2022-10-05T10:38:24,413 Removed build tracker: '/tmp/pip-build-tracker-ywpqh_rj'