2022-10-09T15:22:21,264 Created temporary directory: /tmp/pip-ephem-wheel-cache-b6d33oak 2022-10-09T15:22:21,270 Created temporary directory: /tmp/pip-build-tracker-25i_0n5b 2022-10-09T15:22:21,271 Initialized build tracking at /tmp/pip-build-tracker-25i_0n5b 2022-10-09T15:22:21,271 Created build tracker: /tmp/pip-build-tracker-25i_0n5b 2022-10-09T15:22:21,271 Entered build tracker: /tmp/pip-build-tracker-25i_0n5b 2022-10-09T15:22:21,273 Created temporary directory: /tmp/pip-wheel-adn0d29s 2022-10-09T15:22:21,343 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-09T15:22:21,352 2 location(s) to search for versions of ngs-tools: 2022-10-09T15:22:21,352 * https://pypi.org/simple/ngs-tools/ 2022-10-09T15:22:21,352 * https://www.piwheels.org/simple/ngs-tools/ 2022-10-09T15:22:21,353 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/ 2022-10-09T15:22:21,354 Getting page https://pypi.org/simple/ngs-tools/ 2022-10-09T15:22:21,357 Found index url https://pypi.org/simple 2022-10-09T15:22:21,643 Fetched page https://pypi.org/simple/ngs-tools/ as application/vnd.pypi.simple.v1+json 2022-10-09T15:22:21,658 Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2 2022-10-09T15:22:21,660 Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0 2022-10-09T15:22:21,661 Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1 2022-10-09T15:22:21,663 Found link https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.2 2022-10-09T15:22:21,664 Found link https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.3 2022-10-09T15:22:21,666 Found link https://files.pythonhosted.org/packages/cb/a0/bfbf48866af8f753bfacf0c089e4872351ecb6766706df7f94fa9a94a390/ngs-tools-1.3.0.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.3.0 2022-10-09T15:22:21,667 Found link https://files.pythonhosted.org/packages/7e/d8/c2bf722221cdcd022279bfcc433fa7bc16bb3c2cfb734f16ad20cb5c1870/ngs-tools-1.4.0.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.4.0 2022-10-09T15:22:21,669 Found link https://files.pythonhosted.org/packages/ea/9a/07cc83ca998f4a83c635fc7f2a206f57adc79c033f5bc17481505f80380c/ngs-tools-1.5.0.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.0 2022-10-09T15:22:21,670 Found link https://files.pythonhosted.org/packages/78/1d/e3480a6bba8a4811319e8e2c5f472fd088527ed4778820f73b5237af98c2/ngs-tools-1.5.1.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.1 2022-10-09T15:22:21,672 Found link https://files.pythonhosted.org/packages/67/79/91cfb2bf05a4174358fe2f5e40018ac8d7bd25bdec624c8db7a1754be684/ngs-tools-1.5.2.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.2 2022-10-09T15:22:21,673 Found link https://files.pythonhosted.org/packages/c7/f5/a526d426400c30f56f36a07a08d381b293235f5cd68aced4affbd6078017/ngs-tools-1.5.3.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.3 2022-10-09T15:22:21,675 Found link https://files.pythonhosted.org/packages/8d/af/0df283513a2ae52349c671c9a9eb5981da588369a2f668332a94f116f04d/ngs-tools-1.5.4.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.4 2022-10-09T15:22:21,676 Found link https://files.pythonhosted.org/packages/ea/ed/cc522492a8c5188c62a8b1a58aec0411c3b5e578a15ff23b4b4bac709a3e/ngs-tools-1.5.5.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.5 2022-10-09T15:22:21,678 Found link https://files.pythonhosted.org/packages/ef/90/b0e6f268c69b82f138a6b07d886ca6c43e74451bbe9411d2e7d6c7ac8a34/ngs-tools-1.5.6.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.6 2022-10-09T15:22:21,679 Found link https://files.pythonhosted.org/packages/79/9a/028c77972c82cf4d95a47d2968741efda5702f04bc1fbcb37c82506f605e/ngs-tools-1.5.7.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.7 2022-10-09T15:22:21,680 Found link https://files.pythonhosted.org/packages/f4/67/d084e140f641954599422a2fc4bae3dd32ffa38b5c37e7e6d9bf7f296081/ngs-tools-1.5.8.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.8 2022-10-09T15:22:21,682 Found link https://files.pythonhosted.org/packages/e6/36/844cb2d4d1f3528c78adef82c20ed354412f0f76fa5bf014c62f143eba51/ngs-tools-1.5.9.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.9 2022-10-09T15:22:21,683 Found link https://files.pythonhosted.org/packages/b7/0f/149f474915e6e46779f5ef32e1afaf46605291458e41ab3448217062db00/ngs-tools-1.5.10.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.10 2022-10-09T15:22:21,685 Found link https://files.pythonhosted.org/packages/41/8e/77e1a873ddc57f7d0b6bb128eeb647260d0223b23ee908458d389222bcbf/ngs-tools-1.5.11.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.11 2022-10-09T15:22:21,686 Found link https://files.pythonhosted.org/packages/49/81/85de81b35cebfd7b53b0c61a1b4d19ecbedf8e3fa147997e89051ee53e5f/ngs-tools-1.5.12.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.12 2022-10-09T15:22:21,687 Found link https://files.pythonhosted.org/packages/d8/e3/75bbaf6215c2392dc9515dd3c4275145a3c4ba8df09e96c0a5ea4cd35090/ngs-tools-1.5.13.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.13 2022-10-09T15:22:21,689 Found link https://files.pythonhosted.org/packages/0d/70/466c1a6623fdd59e77d4c6c4d5890ab8b56773ba3670014ef805e9f99042/ngs-tools-1.5.14.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.14 2022-10-09T15:22:21,690 Found link https://files.pythonhosted.org/packages/cd/8a/7711c0ca9cbeb9695e4357a1802e1fd3af54131708bc3cb26952c5a05c33/ngs-tools-1.6.0.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.6.0 2022-10-09T15:22:21,692 Found link https://files.pythonhosted.org/packages/06/34/f04a3190ca0f77c69746bc0b2f861b53a6072d412d3222d4572ee88868fe/ngs-tools-1.7.0.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.0 2022-10-09T15:22:21,693 Found link https://files.pythonhosted.org/packages/d4/63/0407c8ea37be5ba5d431864601cb95397ebe09d097c6e2108a605201cd6b/ngs-tools-1.7.1.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.1 2022-10-09T15:22:21,694 Found link https://files.pythonhosted.org/packages/b0/74/df19803c4da47d6b3695f4354fe50506a463c865ec64ef3e8acac8910981/ngs-tools-1.7.2.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.2 2022-10-09T15:22:21,696 Found link https://files.pythonhosted.org/packages/91/0e/8b63071a3b3dee87506483aaa5717ec0ab9bff0a09189577e5417538e43f/ngs-tools-1.7.3.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.3 2022-10-09T15:22:21,697 Found link https://files.pythonhosted.org/packages/58/61/8b0644f718919404c3ee816166210bd2dce3465499179be0c730e14280ca/ngs-tools-1.8.0.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.8.0 2022-10-09T15:22:21,699 Found link https://files.pythonhosted.org/packages/61/9e/e3742d32a050d8d1455653562cd082caa8645aad2310e880ef9cffcce16a/ngs-tools-1.8.1.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.8.1 2022-10-09T15:22:21,700 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngs-tools/ 2022-10-09T15:22:21,700 Getting page https://www.piwheels.org/simple/ngs-tools/ 2022-10-09T15:22:21,702 Found index url https://www.piwheels.org/simple 2022-10-09T15:22:21,932 Fetched page https://www.piwheels.org/simple/ngs-tools/ as text/html 2022-10-09T15:22:21,954 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.8.0-py3-none-any.whl#sha256=f828cf3d9195c4a97f2a661a8820fae3396ff09e122cbe862ceabcb012f286e6 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,954 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.7.3-py3-none-any.whl#sha256=dc35325ca7bddc751abc118bf75cfe4ea82876d0a96bdc9a70c15771faffbb6a (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,955 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.7.2-py3-none-any.whl#sha256=3076f67e20f8b80469c8ebe5b360be410f5231cb577d7d2a7d6e44ea584ce93d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,956 Skipping link: No binaries permitted for ngs-tools: 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https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.14-py3-none-any.whl#sha256=d47a4be2c7d01a8f94b97f552906628db8f087e89d965a4639a539a55496bd88 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,958 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.13-py3-none-any.whl#sha256=71f0d58589b15c550a9115d38b512a726bb269b1ffed844df50b2ab5a1a31ccc (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,959 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.12-py3-none-any.whl#sha256=f035d3a272d93201ebd4dacad336077f4a4fe79748e96951e1e8f2439f0f5bde (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,959 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.11-py3-none-any.whl#sha256=fc2eef221cdbf60b63b74b217af521166ef46228db32de1ee3b068ec52460fad (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,960 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.10-py3-none-any.whl#sha256=354412a39fb0c2063ae5052bc7556cab650809f7589c98b48b9b1f40ea7b19c5 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,960 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.9-py3-none-any.whl#sha256=c5ca13ac0dc3d7aa4b07eda51f02001a66620f5d465fc73096e86407bf94cb77 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,961 Skipping link: No binaries permitted for ngs-tools: 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https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.2-py3-none-any.whl#sha256=682da6e59007cd48bb3f8c93cb752483e21e6862c377732587e3f19646625c0d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,968 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.1-py3-none-any.whl#sha256=45796f1aff4813d9efa48859e8b01f0e85358e3f2fc682ffdd190956b3fcf1f2 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,969 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.0-py3-none-any.whl#sha256=60dbcc1c5132c03998766fda20b622a4dce037ed6d7f0a627358e1bad4f4372c (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,969 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.1.2-py3-none-any.whl#sha256=9b9bd1c9ee9db219e8ec6daf68374a570b1120218a4ef7d7a04ee415d18e05fd (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-10-09T15:22:21,970 Skipping link: not a file: https://www.piwheels.org/simple/ngs-tools/ 2022-10-09T15:22:21,970 Skipping link: not a file: https://pypi.org/simple/ngs-tools/ 2022-10-09T15:22:22,011 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates 2022-10-09T15:22:22,039 Collecting ngs-tools==1.8.1 2022-10-09T15:22:22,043 Created temporary directory: /tmp/pip-unpack-50tbft_a 2022-10-09T15:22:24,082 Downloading ngs-tools-1.8.1.tar.gz (45.2 MB) 2022-10-09T15:22:38,858 Added ngs-tools==1.8.1 from https://files.pythonhosted.org/packages/61/9e/e3742d32a050d8d1455653562cd082caa8645aad2310e880ef9cffcce16a/ngs-tools-1.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-25i_0n5b' 2022-10-09T15:22:38,861 Running setup.py (path:/tmp/pip-wheel-adn0d29s/ngs-tools_4953a27c815c4a0e9eedf320a59667f9/setup.py) egg_info for package ngs-tools 2022-10-09T15:22:38,863 Created temporary directory: /tmp/pip-pip-egg-info-92dusjye 2022-10-09T15:22:38,863 Preparing metadata (setup.py): started 2022-10-09T15:22:38,865 Running command python setup.py egg_info 2022-10-09T15:22:41,618 running egg_info 2022-10-09T15:22:41,623 creating /tmp/pip-pip-egg-info-92dusjye/ngs_tools.egg-info 2022-10-09T15:22:41,673 writing /tmp/pip-pip-egg-info-92dusjye/ngs_tools.egg-info/PKG-INFO 2022-10-09T15:22:41,678 writing dependency_links to /tmp/pip-pip-egg-info-92dusjye/ngs_tools.egg-info/dependency_links.txt 2022-10-09T15:22:41,683 writing requirements to /tmp/pip-pip-egg-info-92dusjye/ngs_tools.egg-info/requires.txt 2022-10-09T15:22:41,685 writing top-level names to /tmp/pip-pip-egg-info-92dusjye/ngs_tools.egg-info/top_level.txt 2022-10-09T15:22:41,688 writing manifest file '/tmp/pip-pip-egg-info-92dusjye/ngs_tools.egg-info/SOURCES.txt' 2022-10-09T15:22:41,853 reading manifest file '/tmp/pip-pip-egg-info-92dusjye/ngs_tools.egg-info/SOURCES.txt' 2022-10-09T15:22:41,857 reading manifest template 'MANIFEST.in' 2022-10-09T15:22:41,871 adding license file 'LICENSE' 2022-10-09T15:22:41,878 writing manifest file '/tmp/pip-pip-egg-info-92dusjye/ngs_tools.egg-info/SOURCES.txt' 2022-10-09T15:22:42,083 Preparing metadata (setup.py): finished with status 'done' 2022-10-09T15:22:42,097 Source in /tmp/pip-wheel-adn0d29s/ngs-tools_4953a27c815c4a0e9eedf320a59667f9 has version 1.8.1, which satisfies requirement ngs-tools==1.8.1 from https://files.pythonhosted.org/packages/61/9e/e3742d32a050d8d1455653562cd082caa8645aad2310e880ef9cffcce16a/ngs-tools-1.8.1.tar.gz 2022-10-09T15:22:42,099 Removed ngs-tools==1.8.1 from https://files.pythonhosted.org/packages/61/9e/e3742d32a050d8d1455653562cd082caa8645aad2310e880ef9cffcce16a/ngs-tools-1.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-25i_0n5b' 2022-10-09T15:22:42,113 Created temporary directory: /tmp/pip-unpack-t7p9dvc0 2022-10-09T15:22:42,114 Building wheels for collected packages: ngs-tools 2022-10-09T15:22:42,123 Created temporary directory: /tmp/pip-wheel-522wwvew 2022-10-09T15:22:42,124 Building wheel for ngs-tools (setup.py): started 2022-10-09T15:22:42,126 Destination directory: /tmp/pip-wheel-522wwvew 2022-10-09T15:22:42,126 Running command python setup.py bdist_wheel 2022-10-09T15:22:44,857 running bdist_wheel 2022-10-09T15:22:45,003 running build 2022-10-09T15:22:45,004 running build_py 2022-10-09T15:22:45,058 creating build 2022-10-09T15:22:45,059 creating build/lib 2022-10-09T15:22:45,060 creating build/lib/ngs_tools 2022-10-09T15:22:45,062 copying ngs_tools/utils.py -> build/lib/ngs_tools 2022-10-09T15:22:45,068 copying ngs_tools/__init__.py -> build/lib/ngs_tools 2022-10-09T15:22:45,071 copying ngs_tools/sequence.py -> build/lib/ngs_tools 2022-10-09T15:22:45,076 copying ngs_tools/logging.py -> build/lib/ngs_tools 2022-10-09T15:22:45,080 copying ngs_tools/progress.py -> build/lib/ngs_tools 2022-10-09T15:22:45,083 copying ngs_tools/bam.py -> build/lib/ngs_tools 2022-10-09T15:22:45,089 creating build/lib/ngs_tools/fasta 2022-10-09T15:22:45,091 copying ngs_tools/fasta/Fasta.py -> build/lib/ngs_tools/fasta 2022-10-09T15:22:45,094 copying ngs_tools/fasta/__init__.py -> build/lib/ngs_tools/fasta 2022-10-09T15:22:45,098 copying ngs_tools/fasta/FastaEntry.py -> build/lib/ngs_tools/fasta 2022-10-09T15:22:45,103 creating build/lib/ngs_tools/gtf 2022-10-09T15:22:45,104 copying ngs_tools/gtf/Segment.py -> build/lib/ngs_tools/gtf 2022-10-09T15:22:45,108 copying ngs_tools/gtf/Gtf.py -> build/lib/ngs_tools/gtf 2022-10-09T15:22:45,111 copying ngs_tools/gtf/__init__.py -> build/lib/ngs_tools/gtf 2022-10-09T15:22:45,115 copying ngs_tools/gtf/GtfEntry.py -> build/lib/ngs_tools/gtf 2022-10-09T15:22:45,119 copying ngs_tools/gtf/SegmentCollection.py -> build/lib/ngs_tools/gtf 2022-10-09T15:22:45,124 creating build/lib/ngs_tools/fastq 2022-10-09T15:22:45,127 copying ngs_tools/fastq/Fastq.py -> build/lib/ngs_tools/fastq 2022-10-09T15:22:45,131 copying ngs_tools/fastq/Read.py -> build/lib/ngs_tools/fastq 2022-10-09T15:22:45,134 copying ngs_tools/fastq/__init__.py -> build/lib/ngs_tools/fastq 2022-10-09T15:22:45,139 creating build/lib/ngs_tools/binary 2022-10-09T15:22:45,141 copying ngs_tools/binary/Argument.py -> build/lib/ngs_tools/binary 2022-10-09T15:22:45,144 copying ngs_tools/binary/__init__.py -> build/lib/ngs_tools/binary 2022-10-09T15:22:45,147 copying ngs_tools/binary/Binary.py -> build/lib/ngs_tools/binary 2022-10-09T15:22:45,150 copying ngs_tools/binary/ArgumentValidator.py -> build/lib/ngs_tools/binary 2022-10-09T15:22:45,155 creating build/lib/ngs_tools/chemistry 2022-10-09T15:22:45,156 copying ngs_tools/chemistry/MultimodalChemistry.py -> build/lib/ngs_tools/chemistry 2022-10-09T15:22:45,160 copying ngs_tools/chemistry/__init__.py -> build/lib/ngs_tools/chemistry 2022-10-09T15:22:45,163 copying ngs_tools/chemistry/Chemistry.py -> build/lib/ngs_tools/chemistry 2022-10-09T15:22:45,168 copying ngs_tools/chemistry/SpatialChemistry.py -> build/lib/ngs_tools/chemistry 2022-10-09T15:22:45,173 copying ngs_tools/chemistry/SingleCellChemistry.py -> build/lib/ngs_tools/chemistry 2022-10-09T15:22:45,176 running egg_info 2022-10-09T15:22:45,299 writing ngs_tools.egg-info/PKG-INFO 2022-10-09T15:22:45,302 writing dependency_links to ngs_tools.egg-info/dependency_links.txt 2022-10-09T15:22:45,306 writing requirements to ngs_tools.egg-info/requires.txt 2022-10-09T15:22:45,309 writing top-level names to ngs_tools.egg-info/top_level.txt 2022-10-09T15:22:45,369 reading manifest file 'ngs_tools.egg-info/SOURCES.txt' 2022-10-09T15:22:45,387 reading manifest template 'MANIFEST.in' 2022-10-09T15:22:45,399 adding license file 'LICENSE' 2022-10-09T15:22:45,412 writing manifest file 'ngs_tools.egg-info/SOURCES.txt' 2022-10-09T15:22:45,418 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ngs_tools.chemistry.whitelists' as data is deprecated, please list it in `packages`. 2022-10-09T15:22:45,418 !! 2022-10-09T15:22:45,419 ############################ 2022-10-09T15:22:45,420 # Package would be ignored # 2022-10-09T15:22:45,420 ############################ 2022-10-09T15:22:45,420 Python recognizes 'ngs_tools.chemistry.whitelists' as an importable package, 2022-10-09T15:22:45,420 but it is not listed in the `packages` configuration of setuptools. 2022-10-09T15:22:45,421 'ngs_tools.chemistry.whitelists' has been automatically added to the distribution only 2022-10-09T15:22:45,421 because it may contain data files, but this behavior is likely to change 2022-10-09T15:22:45,422 in future versions of setuptools (and therefore is considered deprecated). 2022-10-09T15:22:45,422 Please make sure that 'ngs_tools.chemistry.whitelists' is included as a package by using 2022-10-09T15:22:45,422 the `packages` configuration field or the proper discovery methods 2022-10-09T15:22:45,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-09T15:22:45,423 instead of `find_packages(...)`/`find:`). 2022-10-09T15:22:45,424 You can read more about "package discovery" and "data files" on setuptools 2022-10-09T15:22:45,424 documentation page. 2022-10-09T15:22:45,425 !! 2022-10-09T15:22:45,425 check.warn(importable) 2022-10-09T15:22:45,427 creating build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:45,428 copying ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:45,567 copying ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:46,481 copying ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:46,580 copying ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:46,690 copying ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:46,791 copying ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:46,906 copying ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:47,580 copying ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:47,723 copying ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:47,750 copying ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:47,754 copying ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-10-09T15:22:47,824 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-10-09T15:22:47,824 setuptools.SetuptoolsDeprecationWarning, 2022-10-09T15:22:47,875 installing to build/bdist.linux-armv7l/wheel 2022-10-09T15:22:47,875 running install 2022-10-09T15:22:47,938 running install_lib 2022-10-09T15:22:47,991 creating build/bdist.linux-armv7l 2022-10-09T15:22:47,991 creating build/bdist.linux-armv7l/wheel 2022-10-09T15:22:47,995 creating build/bdist.linux-armv7l/wheel/ngs_tools 2022-10-09T15:22:47,997 copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-10-09T15:22:48,004 creating build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-10-09T15:22:48,005 copying build/lib/ngs_tools/fasta/Fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-10-09T15:22:48,009 copying build/lib/ngs_tools/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-10-09T15:22:48,014 copying build/lib/ngs_tools/fasta/FastaEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-10-09T15:22:48,017 copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-10-09T15:22:48,022 creating build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-10-09T15:22:48,023 copying build/lib/ngs_tools/gtf/Segment.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-10-09T15:22:48,027 copying build/lib/ngs_tools/gtf/Gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-10-09T15:22:48,031 copying build/lib/ngs_tools/gtf/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-10-09T15:22:48,035 copying build/lib/ngs_tools/gtf/GtfEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-10-09T15:22:48,039 copying build/lib/ngs_tools/gtf/SegmentCollection.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-10-09T15:22:48,043 copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-10-09T15:22:48,050 creating build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-10-09T15:22:48,051 copying build/lib/ngs_tools/fastq/Fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-10-09T15:22:48,055 copying build/lib/ngs_tools/fastq/Read.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-10-09T15:22:48,058 copying build/lib/ngs_tools/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-10-09T15:22:48,063 creating build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-10-09T15:22:48,065 copying build/lib/ngs_tools/binary/Argument.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-10-09T15:22:48,068 copying build/lib/ngs_tools/binary/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-10-09T15:22:48,071 copying build/lib/ngs_tools/binary/Binary.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-10-09T15:22:48,075 copying build/lib/ngs_tools/binary/ArgumentValidator.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-10-09T15:22:48,078 copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-10-09T15:22:48,082 copying build/lib/ngs_tools/progress.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-10-09T15:22:48,086 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-10-09T15:22:48,087 copying build/lib/ngs_tools/chemistry/MultimodalChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-10-09T15:22:48,091 copying build/lib/ngs_tools/chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-10-09T15:22:48,095 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:48,096 copying build/lib/ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:48,217 copying build/lib/ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:48,343 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:49,083 copying build/lib/ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:49,090 copying build/lib/ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:49,191 copying build/lib/ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:49,295 copying build/lib/ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:49,444 copying build/lib/ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:49,448 copying build/lib/ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:49,584 copying build/lib/ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:50,308 copying build/lib/ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-10-09T15:22:50,335 copying build/lib/ngs_tools/chemistry/Chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-10-09T15:22:50,340 copying build/lib/ngs_tools/chemistry/SpatialChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-10-09T15:22:50,344 copying build/lib/ngs_tools/chemistry/SingleCellChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-10-09T15:22:50,348 copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-10-09T15:22:50,352 running install_egg_info 2022-10-09T15:22:50,416 Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.8.1-py3.7.egg-info 2022-10-09T15:22:50,440 running install_scripts 2022-10-09T15:22:50,604 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-09T15:22:50,613 creating build/bdist.linux-armv7l/wheel/ngs_tools-1.8.1.dist-info/WHEEL 2022-10-09T15:22:50,618 creating '/tmp/pip-wheel-522wwvew/ngs_tools-1.8.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-09T15:22:50,622 adding 'ngs_tools/__init__.py' 2022-10-09T15:22:50,627 adding 'ngs_tools/bam.py' 2022-10-09T15:22:50,630 adding 'ngs_tools/logging.py' 2022-10-09T15:22:50,632 adding 'ngs_tools/progress.py' 2022-10-09T15:22:50,641 adding 'ngs_tools/sequence.py' 2022-10-09T15:22:50,649 adding 'ngs_tools/utils.py' 2022-10-09T15:22:50,653 adding 'ngs_tools/binary/Argument.py' 2022-10-09T15:22:50,655 adding 'ngs_tools/binary/ArgumentValidator.py' 2022-10-09T15:22:50,658 adding 'ngs_tools/binary/Binary.py' 2022-10-09T15:22:50,660 adding 'ngs_tools/binary/__init__.py' 2022-10-09T15:22:50,667 adding 'ngs_tools/chemistry/Chemistry.py' 2022-10-09T15:22:50,670 adding 'ngs_tools/chemistry/MultimodalChemistry.py' 2022-10-09T15:22:50,673 adding 'ngs_tools/chemistry/SingleCellChemistry.py' 2022-10-09T15:22:50,676 adding 'ngs_tools/chemistry/SpatialChemistry.py' 2022-10-09T15:22:50,679 adding 'ngs_tools/chemistry/__init__.py' 2022-10-09T15:22:51,422 adding 'ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz' 2022-10-09T15:22:56,991 adding 'ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz' 2022-10-09T15:22:58,104 adding 'ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz' 2022-10-09T15:22:58,846 adding 'ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz' 2022-10-09T15:22:59,520 adding 'ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz' 2022-10-09T15:23:00,230 adding 'ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz' 2022-10-09T15:23:05,871 adding 'ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz' 2022-10-09T15:23:07,336 adding 'ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz' 2022-10-09T15:23:07,574 adding 'ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz' 2022-10-09T15:23:07,587 adding 'ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz' 2022-10-09T15:23:07,594 adding 'ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz' 2022-10-09T15:23:07,598 adding 'ngs_tools/fasta/Fasta.py' 2022-10-09T15:23:07,601 adding 'ngs_tools/fasta/FastaEntry.py' 2022-10-09T15:23:07,604 adding 'ngs_tools/fasta/__init__.py' 2022-10-09T15:23:07,607 adding 'ngs_tools/fastq/Fastq.py' 2022-10-09T15:23:07,610 adding 'ngs_tools/fastq/Read.py' 2022-10-09T15:23:07,613 adding 'ngs_tools/fastq/__init__.py' 2022-10-09T15:23:07,617 adding 'ngs_tools/gtf/Gtf.py' 2022-10-09T15:23:07,620 adding 'ngs_tools/gtf/GtfEntry.py' 2022-10-09T15:23:07,622 adding 'ngs_tools/gtf/Segment.py' 2022-10-09T15:23:07,626 adding 'ngs_tools/gtf/SegmentCollection.py' 2022-10-09T15:23:07,630 adding 'ngs_tools/gtf/__init__.py' 2022-10-09T15:23:07,634 adding 'ngs_tools-1.8.1.dist-info/LICENSE' 2022-10-09T15:23:07,636 adding 'ngs_tools-1.8.1.dist-info/METADATA' 2022-10-09T15:23:07,638 adding 'ngs_tools-1.8.1.dist-info/WHEEL' 2022-10-09T15:23:07,640 adding 'ngs_tools-1.8.1.dist-info/top_level.txt' 2022-10-09T15:23:07,642 adding 'ngs_tools-1.8.1.dist-info/RECORD' 2022-10-09T15:23:08,815 removing build/bdist.linux-armv7l/wheel 2022-10-09T15:23:09,115 Building wheel for ngs-tools (setup.py): finished with status 'done' 2022-10-09T15:23:10,445 Created wheel for ngs-tools: filename=ngs_tools-1.8.1-py3-none-any.whl size=45157850 sha256=a9a171f5a164b0960a528126c28e1b83e9bd443588c4be675001fa1eb6fb6585 2022-10-09T15:23:10,447 Stored in directory: /tmp/pip-ephem-wheel-cache-b6d33oak/wheels/6e/ce/e4/760fab96267023bf0a594c976c7cb251458cd1ec1bfbf11ed1 2022-10-09T15:23:10,527 Successfully built ngs-tools 2022-10-09T15:23:13,650 Removed build tracker: '/tmp/pip-build-tracker-25i_0n5b'