2022-10-11T03:57:37,545 Created temporary directory: /tmp/pip-ephem-wheel-cache-khpm6xim 2022-10-11T03:57:37,551 Created temporary directory: /tmp/pip-build-tracker-v1r0xpeu 2022-10-11T03:57:37,551 Initialized build tracking at /tmp/pip-build-tracker-v1r0xpeu 2022-10-11T03:57:37,552 Created build tracker: /tmp/pip-build-tracker-v1r0xpeu 2022-10-11T03:57:37,552 Entered build tracker: /tmp/pip-build-tracker-v1r0xpeu 2022-10-11T03:57:37,553 Created temporary directory: /tmp/pip-wheel-gfftlvl4 2022-10-11T03:57:37,621 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-11T03:57:37,630 2 location(s) to search for versions of scib-metrics: 2022-10-11T03:57:37,630 * https://pypi.org/simple/scib-metrics/ 2022-10-11T03:57:37,630 * https://www.piwheels.org/simple/scib-metrics/ 2022-10-11T03:57:37,631 Fetching project page and analyzing links: https://pypi.org/simple/scib-metrics/ 2022-10-11T03:57:37,632 Getting page https://pypi.org/simple/scib-metrics/ 2022-10-11T03:57:37,635 Found index url https://pypi.org/simple 2022-10-11T03:57:37,750 Skipping link: No binaries permitted for scib-metrics: https://files.pythonhosted.org/packages/19/3a/450f9acd0a3f46ef7f63b8c8e80ddaa4768a68ab20973f32ba2b157028db/scib_metrics-0.0.2-py3-none-any.whl#sha256=35372423c00264abcbe9c6c71ee44ffaf0a365047dd6329283cd3714f220743b (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-11T03:57:37,752 Found link https://files.pythonhosted.org/packages/c5/50/28e2f87983f8dd1a576df8c5cc8b9a1f0cdcf0d8011d8acb849eeb9b99c5/scib_metrics-0.0.2.tar.gz#sha256=6db670e164ceeb34e0f65ec52514f9c3f72d6452d9d1693f775b13c1cf062e3d (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8), version: 0.0.2 2022-10-11T03:57:37,753 Skipping link: No binaries permitted for scib-metrics: https://files.pythonhosted.org/packages/f4/37/d2461c6cde03c68c7f7395cc4186ae1ac6885af6ac68ece90f7b5e558274/scib_metrics-0.0.3-py3-none-any.whl#sha256=6d24b5ba3b05a72514651add571af01ef90dad33d2d66575197aaed66947120b (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-11T03:57:37,754 Found link https://files.pythonhosted.org/packages/ad/26/921a950abc20fe179822f7d485e3ca4e7768ed75096fcec955098b55d471/scib_metrics-0.0.3.tar.gz#sha256=a2a51a8e869fec61ff13268a76db75c3037b9e851608035519d284a9a5e7eab9 (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8), version: 0.0.3 2022-10-11T03:57:37,755 Skipping link: No binaries permitted for scib-metrics: https://files.pythonhosted.org/packages/3f/43/4ce2c2b757307b6515352f4bc37c47f0e63ae9008bec8a62a5d2822fee38/scib_metrics-0.0.4-py3-none-any.whl#sha256=cff7639af1e31e61e6c9fc8e0316cdd26dbcd650ccc644efd6d5cff8f592f3c0 (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-11T03:57:37,756 Found link https://files.pythonhosted.org/packages/6f/e4/e3adc25171de6f5fef446056398f709cc597a4250a309fafd508d8a0ca3f/scib_metrics-0.0.4.tar.gz#sha256=ba97ece01ba5d03bdd2555c4d2b58914cb27f00226cabc84f6d4c0665c265b07 (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8), version: 0.0.4 2022-10-11T03:57:37,757 Fetching project page and analyzing links: https://www.piwheels.org/simple/scib-metrics/ 2022-10-11T03:57:37,757 Getting page https://www.piwheels.org/simple/scib-metrics/ 2022-10-11T03:57:37,759 Found index url https://www.piwheels.org/simple 2022-10-11T03:57:37,976 Skipping link: No binaries permitted for scib-metrics: https://www.piwheels.org/simple/scib-metrics/scib_metrics-0.0.3-py3-none-any.whl#sha256=6d24b5ba3b05a72514651add571af01ef90dad33d2d66575197aaed66947120b (from https://www.piwheels.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-11T03:57:37,977 Skipping link: No binaries permitted for scib-metrics: https://www.piwheels.org/simple/scib-metrics/scib_metrics-0.0.2-py3-none-any.whl#sha256=35372423c00264abcbe9c6c71ee44ffaf0a365047dd6329283cd3714f220743b (from https://www.piwheels.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-11T03:57:37,977 Skipping link: not a file: https://www.piwheels.org/simple/scib-metrics/ 2022-10-11T03:57:37,978 Skipping link: not a file: https://pypi.org/simple/scib-metrics/ 2022-10-11T03:57:38,023 Given no hashes to check 1 links for project 'scib-metrics': discarding no candidates 2022-10-11T03:57:38,065 Collecting scib-metrics==0.0.4 2022-10-11T03:57:38,069 Created temporary directory: /tmp/pip-unpack-bcbnzk85 2022-10-11T03:57:38,563 Downloading scib_metrics-0.0.4.tar.gz (26 kB) 2022-10-11T03:57:38,738 Added scib-metrics==0.0.4 from https://files.pythonhosted.org/packages/6f/e4/e3adc25171de6f5fef446056398f709cc597a4250a309fafd508d8a0ca3f/scib_metrics-0.0.4.tar.gz#sha256=ba97ece01ba5d03bdd2555c4d2b58914cb27f00226cabc84f6d4c0665c265b07 to build tracker '/tmp/pip-build-tracker-v1r0xpeu' 2022-10-11T03:57:38,750 Created temporary directory: /tmp/pip-build-env-1kssjs24 2022-10-11T03:57:38,771 Created temporary directory: /tmp/pip-standalone-pip-64sz0u5r 2022-10-11T03:57:41,184 Installing build dependencies: started 2022-10-11T03:57:41,186 Running command pip subprocess to install build dependencies 2022-10-11T03:57:52,559 Using pip 22.1.2 from /tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip (python 3.9) 2022-10-11T03:57:54,274 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-11T03:57:54,993 Collecting hatchling 2022-10-11T03:57:55,033 Using cached https://www.piwheels.org/simple/hatchling/hatchling-1.11.0-py3-none-any.whl (73 kB) 2022-10-11T03:57:55,515 Collecting packaging>=21.3 2022-10-11T03:57:55,549 Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB) 2022-10-11T03:57:55,810 Collecting pathspec>=0.10.1 2022-10-11T03:57:55,843 Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.10.1-py3-none-any.whl (27 kB) 2022-10-11T03:57:56,119 Collecting pluggy>=1.0.0 2022-10-11T03:57:56,151 Using cached https://www.piwheels.org/simple/pluggy/pluggy-1.0.0-py2.py3-none-any.whl (13 kB) 2022-10-11T03:57:56,371 Collecting editables>=0.3 2022-10-11T03:57:56,409 Using cached https://www.piwheels.org/simple/editables/editables-0.3-py3-none-any.whl (4.7 kB) 2022-10-11T03:57:56,728 Collecting tomli>=1.2.2 2022-10-11T03:57:56,814 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2022-10-11T03:57:57,505 Collecting pyparsing!=3.0.5,>=2.0.2 2022-10-11T03:57:57,566 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB) 2022-10-11T03:58:05,044 Installing collected packages: tomli, pyparsing, pluggy, pathspec, editables, packaging, hatchling 2022-10-11T03:58:07,237 Creating /tmp/pip-build-env-1kssjs24/overlay/bin 2022-10-11T03:58:07,241 changing mode of /tmp/pip-build-env-1kssjs24/overlay/bin/hatchling to 755 2022-10-11T03:58:07,290 Successfully installed editables-0.3 hatchling-1.11.0 packaging-21.3 pathspec-0.10.1 pluggy-1.0.0 pyparsing-3.0.9 tomli-2.0.1 2022-10-11T03:58:07,502 --- Logging error --- 2022-10-11T03:58:07,519 Traceback (most recent call last): 2022-10-11T03:58:07,520 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-10-11T03:58:07,520 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-10-11T03:58:07,521 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-10-11T03:58:07,521 extend(render(renderable, render_options)) 2022-10-11T03:58:07,521 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-10-11T03:58:07,522 for render_output in iter_render: 2022-10-11T03:58:07,522 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-10-11T03:58:07,522 for line in lines: 2022-10-11T03:58:07,523 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-10-11T03:58:07,523 for segment in segments: 2022-10-11T03:58:07,523 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-10-11T03:58:07,524 renderable = rich_cast(renderable) 2022-10-11T03:58:07,524 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-10-11T03:58:07,524 renderable = cast_method() 2022-10-11T03:58:07,525 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-10-11T03:58:07,525 pip_cmd = get_best_invocation_for_this_pip() 2022-10-11T03:58:07,525 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-10-11T03:58:07,526 if found_executable and os.path.samefile( 2022-10-11T03:58:07,526 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-10-11T03:58:07,526 s2 = os.stat(f2) 2022-10-11T03:58:07,527 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-10-11T03:58:07,527 Call stack: 2022-10-11T03:58:07,531 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-10-11T03:58:07,532 return _run_code(code, main_globals, None, 2022-10-11T03:58:07,532 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-10-11T03:58:07,532 exec(code, run_globals) 2022-10-11T03:58:07,532 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/__main__.py", line 31, in 2022-10-11T03:58:07,533 sys.exit(_main()) 2022-10-11T03:58:07,533 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-10-11T03:58:07,533 return command.main(cmd_args) 2022-10-11T03:58:07,534 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-10-11T03:58:07,534 return self._main(args) 2022-10-11T03:58:07,534 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-10-11T03:58:07,535 self.handle_pip_version_check(options) 2022-10-11T03:58:07,535 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-10-11T03:58:07,535 pip_self_version_check(session, options) 2022-10-11T03:58:07,536 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-10-11T03:58:07,536 logger.info("[present-rich] %s", upgrade_prompt) 2022-10-11T03:58:07,536 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-10-11T03:58:07,536 self._log(INFO, msg, args, **kwargs) 2022-10-11T03:58:07,537 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-10-11T03:58:07,537 self.handle(record) 2022-10-11T03:58:07,537 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-10-11T03:58:07,538 self.callHandlers(record) 2022-10-11T03:58:07,538 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-10-11T03:58:07,538 hdlr.handle(record) 2022-10-11T03:58:07,538 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-10-11T03:58:07,539 self.emit(record) 2022-10-11T03:58:07,539 File "/tmp/pip-standalone-pip-64sz0u5r/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-10-11T03:58:07,539 self.handleError(record) 2022-10-11T03:58:07,539 Message: '[present-rich] %s' 2022-10-11T03:58:07,540 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-10-11T03:58:08,021 Installing build dependencies: finished with status 'done' 2022-10-11T03:58:08,048 Getting requirements to build wheel: started 2022-10-11T03:58:08,050 Running command Getting requirements to build wheel 2022-10-11T03:58:08,732 Getting requirements to build wheel: finished with status 'done' 2022-10-11T03:58:08,744 Created temporary directory: /tmp/pip-modern-metadata-kcwm040t 2022-10-11T03:58:08,749 Preparing metadata (pyproject.toml): started 2022-10-11T03:58:08,751 Running command Preparing metadata (pyproject.toml) 2022-10-11T03:58:10,201 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-11T03:58:10,218 Source in /tmp/pip-wheel-gfftlvl4/scib-metrics_ccbfe26fe0b74f7fb2335f30cb0dbba0 has version 0.0.4, which satisfies requirement scib-metrics==0.0.4 from https://files.pythonhosted.org/packages/6f/e4/e3adc25171de6f5fef446056398f709cc597a4250a309fafd508d8a0ca3f/scib_metrics-0.0.4.tar.gz#sha256=ba97ece01ba5d03bdd2555c4d2b58914cb27f00226cabc84f6d4c0665c265b07 2022-10-11T03:58:10,220 Removed scib-metrics==0.0.4 from https://files.pythonhosted.org/packages/6f/e4/e3adc25171de6f5fef446056398f709cc597a4250a309fafd508d8a0ca3f/scib_metrics-0.0.4.tar.gz#sha256=ba97ece01ba5d03bdd2555c4d2b58914cb27f00226cabc84f6d4c0665c265b07 from build tracker '/tmp/pip-build-tracker-v1r0xpeu' 2022-10-11T03:58:10,234 Created temporary directory: /tmp/pip-unpack-odbd09a3 2022-10-11T03:58:10,235 Building wheels for collected packages: scib-metrics 2022-10-11T03:58:10,244 Created temporary directory: /tmp/pip-wheel-ay7rg_8i 2022-10-11T03:58:10,245 Destination directory: /tmp/pip-wheel-ay7rg_8i 2022-10-11T03:58:10,250 Building wheel for scib-metrics (pyproject.toml): started 2022-10-11T03:58:10,252 Running command Building wheel for scib-metrics (pyproject.toml) 2022-10-11T03:58:10,546 Building wheel for scib-metrics (pyproject.toml): finished with status 'done' 2022-10-11T03:58:10,558 Created wheel for scib-metrics: filename=scib_metrics-0.0.4-py3-none-any.whl size=15885 sha256=cff7639af1e31e61e6c9fc8e0316cdd26dbcd650ccc644efd6d5cff8f592f3c0 2022-10-11T03:58:10,560 Stored in directory: /tmp/pip-ephem-wheel-cache-khpm6xim/wheels/41/ef/ac/e9089c34c9468c21f518effac5795614fd340bdaa97de7819d 2022-10-11T03:58:10,583 Successfully built scib-metrics 2022-10-11T03:58:10,590 Removed build tracker: '/tmp/pip-build-tracker-v1r0xpeu'