2022-10-16T00:27:36,793 Created temporary directory: /tmp/pip-ephem-wheel-cache-sc257hwp
2022-10-16T00:27:36,799 Created temporary directory: /tmp/pip-build-tracker-aj8dz6qd
2022-10-16T00:27:36,799 Initialized build tracking at /tmp/pip-build-tracker-aj8dz6qd
2022-10-16T00:27:36,800 Created build tracker: /tmp/pip-build-tracker-aj8dz6qd
2022-10-16T00:27:36,800 Entered build tracker: /tmp/pip-build-tracker-aj8dz6qd
2022-10-16T00:27:36,801 Created temporary directory: /tmp/pip-wheel-_y3w75vl
2022-10-16T00:27:36,875 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-16T00:27:36,883 2 location(s) to search for versions of pytrimal:
2022-10-16T00:27:36,883 * https://pypi.org/simple/pytrimal/
2022-10-16T00:27:36,883 * https://www.piwheels.org/simple/pytrimal/
2022-10-16T00:27:36,885 Fetching project page and analyzing links: https://pypi.org/simple/pytrimal/
2022-10-16T00:27:36,886 Getting page https://pypi.org/simple/pytrimal/
2022-10-16T00:27:36,889 Found index url https://pypi.org/simple
2022-10-16T00:27:37,214   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/e7/92/deb27aec34cc7863b866ea29900d2e47e17511e771fd93e4a9f73ad6b8ac/pytrimal-0.1.0-cp310-cp310-macosx_10_15_x86_64.whl#sha256=7ac40ae8834c6246941caba5c28ceba9631310e96b740ace4bb344852f36a06b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,215   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ec/60/4797839372e3883bb134efc65c098c3c6c4d96d8022e41400a1a8a90bb0b/pytrimal-0.1.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=77d22b9309c6394e026ef8fc6b1ece370675afe246210531846e7c22a27e16cd (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,215   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/4b/f5/1d7233b1405054090c3b53605b27bad7119dd1c6238bdc174bb4b10b5df2/pytrimal-0.1.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=14f1df21be7edec3b02a6f08b0a0ebf323d2fb24590dca90462ef7e11f367895 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,216   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/48/2f/69945d01f3d8af3f9a8442c7d5a0fa19f7c81361d568bc856bf502c8ae9a/pytrimal-0.1.0-cp35-cp35m-macosx_10_14_x86_64.whl#sha256=0a2042a306ffc01083b26cd2945b6d5ba89d9082db20ec93186717c054b4e1b1 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,217   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/a9/c2/ccddd18f9a1918b79b346e0d856a2f08971ce68e25d780a9446e3a53860b/pytrimal-0.1.0-cp35-cp35m-manylinux2010_x86_64.whl#sha256=2cabfe69e6cb6aaf76b37a39598b253c05412cd39f7c89deac90d56d42126692 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,217   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/05/6b/cd4cd3b14e9b5644113e3e51cc15a839b3068231cec06441de8f99632b3a/pytrimal-0.1.0-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=ed3a1e341ba3c9678be46a8c3ae58fcbf2769e1a37baf901b4dca546382f1f83 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,218   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/56/0f/65a63a8cbd8e7ee8e80afec55bda84b4e236841224f9a7221595c00a1dba/pytrimal-0.1.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=cdaa9038a4aeb8eb2ba412951bb5621d328d83caa17181490764983269a13e3b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,218   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/0a/38/92fb02233538de1e77eb533350ed7d14068ef1a6f031462f11bce08e05df/pytrimal-0.1.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=d8a629fcad2206efc074ab17e47b2a03d5a2df2d374be11ba53afda0c10c269f (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,219   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/2e/4d/af840c124e2b391640d8df3045b4cdb2bb0eb4d952fe95acd65a0f9043e7/pytrimal-0.1.0-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=444ef85979b7456875ece6c283930a2955244d7b3de09b894d1f893a19a5095e (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,219   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/75/3d/52511029b5d404a58457debf7d60a8fca6b4fd4322db7d2073d8026119b2/pytrimal-0.1.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=8395af2505b928c812356425cc11eb1762542e53fdbc9a92c18477900f5939af (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,220   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d1/cd/2b631d34ee040ffa60a48b58b0c38e5dc41d5f5251fd27f47a4f16650392/pytrimal-0.1.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=86445e44e5917738fffb693e162f5e6f7912b86a100e86b54d46c9f27f47d670 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,220   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/8b/6c/b9e93831941b14de3a41445333d9e09e2389378754527ab0743ff97ab5c7/pytrimal-0.1.0-cp38-cp38-macosx_10_15_x86_64.whl#sha256=527a3b22729af435d86134d20cef0fbc54bc9bd7cc61531f4565f6b3787d88f9 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,221   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/94/1c/dab45d42e6fb9f9f2e8a4e76da1722faadf7eba1254c912b07e443398499/pytrimal-0.1.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=8f0e6c857362571b1e859540dfaf3f2ad95b162ef06e16a90a5ee32a6c617237 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,221   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d9/f8/113e5e8ffc20f0477eb2c20d59e0e64c6d5dda295af95eb6979bd2efee93/pytrimal-0.1.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=3e4c96d07fab29f287e898b702ff1504ce4e5cac9378d79d51967a021e46e050 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,222   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/cd/ca/e3bc1316c04c94ba11885b933473ce229863522b438a112c27b2fbfe080e/pytrimal-0.1.0-cp39-cp39-macosx_10_15_x86_64.whl#sha256=38d34b9f2e2afeccb4da9c7850260217e31062f0038f36978978bc90d9ffb3e1 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,222   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/7c/15/c057ace451e9ccc70f96639e56461ca403ba2c829af6c6bbf777d36494df/pytrimal-0.1.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=e9bc72bde38b3e4fd075f1f8f8f7d9d5a8d7c0f7bbd42f72688c74e527327a32 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,223   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/6c/78/0a693856b86c7e419cfebe567e5c8ceafe8339b5600762d8cd8566607de9/pytrimal-0.1.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=0e62099e372edbc13fd5b4175a65254bab26850dbec6807cba86135a67add2b5 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,223   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/2c/e4/b946aca9e551aa0dd6cd90705547b979e4834cb5a63834121f4f911461e3/pytrimal-0.1.0-pp36-pypy36_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=c8db855bc7409c535403bd81120fa8d623e52aeddb96d055e5fd826c8ee16dce (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,224   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/19/48/1283651eccc18b73c1f0c4af418db4a831d1ef949d9edbdbf8a47f40d2a8/pytrimal-0.1.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=1fa01edbdce1d5bddbf98be5df21cd9dd59a703cf8365448ba5a634e7946bf1a (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,224   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/84/24/1bc90c83278945f66b31974a2aba5bf3e9d4b272d78790120748bf9485f5/pytrimal-0.1.0-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=cb0ecf1eea08b25da60a2cbadc2015bd9393148d1c60918dd4e68f0ec84bfa39 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,225   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/b1/6d/7d46cda527909bd41ead416342e24999e8cc63c82560bfaf5918fd708af7/pytrimal-0.1.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=f460c96c2a032554984102bb7e57c7d4cc61d1abf1069e1362747f65a49fdf96 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,225   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/6a/aa/bae9c9761abe07e00fa0dc292ef343354f2e508e9ce37f72f8754dfb7903/pytrimal-0.1.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=30d6cf22157d9b29d5c3afb945f93f180c3c385e2b21ca688183d737ec7a48ff (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,227   Found link https://files.pythonhosted.org/packages/39/09/11aae9fa483929539f100beb384da40724188ff102ee94517b4a3ccba5c8/pytrimal-0.1.0.tar.gz#sha256=1af23728d26de53950644e1bdd1803a7fb8d9d6c6cb0c4aa38953c4fd0afe994 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5), version: 0.1.0
2022-10-16T00:27:37,228   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/cd/95/15ba2a87e8ef78e2362fb9fa9900f0cee75d4938f92d2d889b0e8cd09f71/pytrimal-0.1.1-cp310-cp310-macosx_10_15_x86_64.whl#sha256=cde8e4142c6ea1e5ebd35d81a4e93be816efb23a12c928d2522349577724a425 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,228   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/16/99/4b6ddc7537fa853cadf9d9ef81af95019c58003d5119febce6af8bddedcb/pytrimal-0.1.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=d037f9d14b4dec97c2fce851bad205c8c9ea46a3dde4a8fb7f0f39ed4a2d9e70 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,229   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/b5/c3/e1edfbe9450b0c2d23d36fa8e624dc28220d7f23ddaf3e46829c18c1725b/pytrimal-0.1.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=93b5ad25babcd407da31ff1dcea921de0dc18eafadbd17a9ab25e964a08d45df (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,229   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/9b/c9/655540ff5e71515c6a37a61e71b5dcc9b3c29515a7ed7601dd40f7e5e8ce/pytrimal-0.1.1-cp35-cp35m-macosx_10_14_x86_64.whl#sha256=5c7a6f54f525b5d8902660ad56ef89b460332c586a75fd1fd20efdc95cf22e97 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,230   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/1c/85/3880bc8ccfc099b68d8e18baf2aa194127082c0cdf274833c13e83cee1a9/pytrimal-0.1.1-cp35-cp35m-manylinux2010_x86_64.whl#sha256=9686c407bf596ef2a2d123d3b133cf1977562273c64a3b140a649403994ecb8d (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,230   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/61/43/dc432a69a7f2a59f4e5e509c206f1178d56b401206cc661957179c9ddeae/pytrimal-0.1.1-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=2cbfd6359e677fad3885d99af6be30da10fe0d1e95cdbc65484b22ff3416fbc4 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,231   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/12/7a/53b39f4d3b3ae1da433bae3111d667d3d5813bece2a4b19bcc4a21fd11fa/pytrimal-0.1.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=19ad1b204530940193eca5cb407cbc5a9caf9217ef09d66380e0a61adc15e7dd (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,231   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/77/8b/87f775f8f50c6f3b32813d272f7534fa00372db8cdb41ceda4971662368f/pytrimal-0.1.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=25fe1d0d110d26bcbf2e1486c5df482e57eb04fb5afb2d846d87b3beed446822 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,232   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/e5/e5/9bd5e09db10f69b2d749e985a5da7b66e98688f285bddf7f5a666301aff3/pytrimal-0.1.1-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=29a4451db228da9f40e3d63bfd5fe957884d728ba4ca8f4b7ca84844dd9e0f90 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,233   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/da/35/5ce9cbae068eb2d7fb9c03aa07281308751a38c3d6bdb521c69345fefbda/pytrimal-0.1.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=425f1f9bf612e91c1f74b42578ac6d570737c099c220aa9cbea6448ee6b5bf31 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,233   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/74/22/25d73231abb8d9553a4be31493a8034544d1c16ee60204ab408c7406973d/pytrimal-0.1.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=3750218a87c26619134a2e3b683dbb0e3ac4931e2a36fde4924483e052372ea4 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,234   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/72/34/deec927936c24cad8d5dd6b1d8e503e9087a9e08312ebe4cae88beb217ce/pytrimal-0.1.1-cp38-cp38-macosx_10_15_x86_64.whl#sha256=61f35b5ff95e57ae34eefff455903d142ce6483ea53dc119a46c183d97314899 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,234   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/27/f7/10554d83d0ec45d5500b9e98eaca33706103b94ee91c6f6bf9964b0a380c/pytrimal-0.1.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=65a2b64a8c0f97d3f612b68f0961b7d3f5433e383959b256543e0c0f73b20165 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,235   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/41/c7/044460829089c368091d78f9a8b99327e789d33fb1e7bd1803ea66b3113b/pytrimal-0.1.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=b37161d15b051c54970f4ec201de7b5eac97be854f94a8f6ead1959b8abb380b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,235   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/6f/9e/05203b6f71b87fb6ecd15c3e9c574abe49252c23207bffd33946e11dff82/pytrimal-0.1.1-cp39-cp39-macosx_10_15_x86_64.whl#sha256=79225c6ea3a4d5dbab116b470481b26e4704a33472f8ae4567ed4ce58605de74 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,236   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/bb/db/7c0fa4d3e5d996d2c9714a53e4391aba90f5fc2d532e43dce4af051da656/pytrimal-0.1.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=20a99b74a063130d2f999cbf3723549715c502baab1dbe28339bcfe0dd2ade1a (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,236   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/71/c2/de54862ac53e4644da95cc5d45c9e5dac1d461692ee5db20d380429b29df/pytrimal-0.1.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=2cc304e66208eeea4732f0fb751fa4212aa5a9606e62f289ecde42e8e95f5f7c (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,237   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/f3/9f/268de33e758c07ddaca562b49fc69e05e2754bcfebd1ebd981e259eeff6f/pytrimal-0.1.1-pp36-pypy36_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=256a8ef5404d334442c82dabac708f970ec96bdc023087697220151238ecc4a2 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,237   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/36/58/d74103e669267602491f2ed32f9d2579844fa18da914f0397bf096daa911/pytrimal-0.1.1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=6a44c2e9cab526603dbe45d2abacd973dab841c01b0deacfe2b618fa2abfa435 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,238   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ae/ca/58bd8a813592f678c7d550bf0ddcc625922a2f891b4c53b2062c71aaa1a1/pytrimal-0.1.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=9a441f0a8810c42469e30086dace493dbf7c360a8c328ddb6719b3084b07101d (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,239   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/c4/8b/f4066f88bce2590fbad7a52d52588c23a7410a07e5b278925ecf5b0bf934/pytrimal-0.1.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=3c4d25b7ec0467576eeac127f2ec05912fca109c16e26e72726e8410a638496b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,242   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/c9/f7/fd0b169d7447de46c232e11e04a5b880448effa3e94e15121b5df4369106/pytrimal-0.1.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=a83f10fd025954186a33660ab431f784b0a7567121c1a4c646c81070a94fbb45 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,242   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/8a/ed/fc33fc64e959980eb54d0b506d8983b4a92999f5f8ecf21a504fd22b25b3/pytrimal-0.1.2-cp35-cp35m-macosx_10_14_x86_64.whl#sha256=6ef97f79d2d7b5da815943f9b543cbd052f97d4d9cf02e3dd3346c309cc6e069 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,243   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d5/fd/b234fd262c716f2c9b201cabc7b26f2ccdb60e34c9695034ddfdda347d00/pytrimal-0.1.2-cp35-cp35m-manylinux2010_x86_64.whl#sha256=ac3df92814819af7081d24cd06435a90ac111fbdc5ee2791962e908a3e5eb670 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,243   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/b5/e6/a8bc5bea8875b2bb52a443d2467a8048e1ee4f99c8f35f3bd215c26b51b6/pytrimal-0.1.2-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=497bffa15e479b554ba92199a16b37f64d647db6bf37c5298135c7376c9005b3 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,244   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/80/55/ac4a531b5f9ab21dca1e4b21fd7a0ec1adf82e8f1062de13585589821bb0/pytrimal-0.1.2-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=241a9c1190cbccf97566cb6d4d5ab4eb6f2b2634ea3546ad4be074e8f08c0771 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,245   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/23/59/f4e10f20bbfe8bf34b2e38543ec73e04ea9f56d95142e0724f90616fa427/pytrimal-0.1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=05b3209c579a846608766329366a69b3241ac7dc628568e7439c95486dee0856 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,246   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/5a/16/36f73560aa5d2627ba84d23cbb4b0d6a30c20b5e179ff26bf287ac603721/pytrimal-0.1.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=f545edc9bc11627f428286847878b3d51c37316b905559b20bb0193da7c0f9d0 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,246   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/a2/24/9b43cf80a445706c5c08117fa967f740acdd11167fa1dc0f6810e01ec8b4/pytrimal-0.1.2-cp38-cp38-macosx_10_15_x86_64.whl#sha256=cef05d99d3ca63df3fa52ee7482a7763e8fdab18733ccd007c054aeadd6d609e (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,247   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/fc/e2/a798c77f4b6d8a0f06a3ef92d2f5d05c865c4a7ce91de705b85691f76196/pytrimal-0.1.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=bb394ce06be51a91bbd0b159ae1a928a98216af1342d5d68a152c957a18b357f (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,247   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/4c/f4/116b6c912b4dab32fefed37ac072702cb45ec87b9854236bafde9bfef12f/pytrimal-0.1.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=eb9d30ec484b308d38735920e2913836fc70002389c0992a88920e89bf0999a9 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,248   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/f3/34/3be16ccee3ce5ec94a6d9a2f83beafc2fd4f7a51b2806c03b3b46f14433d/pytrimal-0.1.2-cp39-cp39-macosx_10_15_x86_64.whl#sha256=5b8745b09a369885adb9745476f34cc7e6a0959974d8193eeeee125f65ab053b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,248   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/1e/25/a2bfe3b916c029ab201db9b77ab789e70591cf3f9f8c0fcd95ac78824c7e/pytrimal-0.1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=059eb4da6d6158518abfc36a9ad048e3b3b7535a3eeb901a7d3f2ebf9f416cc7 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,249   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ca/ca/6a8fb95c6d7d73a36e20283f12c13bb17ad1bfc71e7a58bbd5f546d2a720/pytrimal-0.1.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=bf27c551a443b583405b4a0736e522efa5fd8623584d43bc8d6103c3a9622221 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,249   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/8e/00/2f4c24fac8b530c8e66f5ed1b593a38346bd5a6e3d7d1473f7818b98cf1f/pytrimal-0.1.2-pp36-pypy36_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=c4c0cda6c215440f91a952291f25c6ad418f21926f00ad68a8364689050361c1 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,250   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/83/22/73461217ee23720834993d13a3ddbdd4dc49e1dda18c9a810b0effef1faf/pytrimal-0.1.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=8c4dd7597176581d886f141ae413c0b04e8915aabf979897939768a5a1043223 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,250   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ae/90/ec8c2726618ff74741dc87b626808192f7e8e88f04d1c8467ebe589ed88c/pytrimal-0.1.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=30493458cddcf6be8bb5e1fd2b60e950c980c16943a29994b63c93d06ba8dd6b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,251   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/b8/65/d1ae935e5c78469a2a35b07bef9915adfe50d46b5138bd3ee6996e125b95/pytrimal-0.1.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=edaa588782951a61cdcc9324e1b772024a4c20761027dbb9343276e1c0e09c3d (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,251   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d6/d0/e6d9db538fce39b6411ee7f1d4ad12e206f161ce0d6c8f7fad68721ed33a/pytrimal-0.1.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=40d9e3eefa14c7cb61d4e923c44940e90c20baae4e76ce707ba65df851a2b983 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,253   Found link https://files.pythonhosted.org/packages/bb/9f/09b1393ef649cd099cd2eae2f3044b441d688578cf1570c108171581d29e/pytrimal-0.1.2.tar.gz#sha256=4d179c12795f3e9f50075bcf201f31a15d379ee9698b5c3514c6a66799dc143a (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5), version: 0.1.2
2022-10-16T00:27:37,253   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/b8/5c/be1fe9c15ce6811d668dd80332f18a167d53d785128ae810662e0d42b744/pytrimal-0.2.0-cp310-cp310-macosx_10_15_x86_64.whl#sha256=8c4ddc27717299e7c487448dd7c27af8f0f8a63be1666c6174907cc4d2a85f3a (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,254   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/bf/7b/104aa07074f5806820ca3c2e113601e5a1835c465992cb184ce45afa58a2/pytrimal-0.2.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=1789f411e0d985cfc08db0e55a4e40e275cdde6f546ac34a91332c15dc2e6a60 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,254   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/56/57/c4ba8cc35ba9d797b6f084caae9cc85a6194359b195ba8cbd2e87a763eb9/pytrimal-0.2.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=0a0eb24d9184d0b7857332365a04f07faf823397474fc4ff8d750060a80fa9d3 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,255   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/9c/cb/bc35ab42ef81be74d22cf5910c25995244cd57b7e61b74b28089b58a39e4/pytrimal-0.2.0-cp35-cp35m-macosx_10_14_x86_64.whl#sha256=65038e4f11e2dc9b3338dd5d705c41568d714a45e8d312639803764c8b3fcd2e (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,255   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/f5/4b/b62d869a5d1957aa4a4e7952d2db0f5cff33ee9fe84e6f10a51ef3cb6e63/pytrimal-0.2.0-cp35-cp35m-manylinux2010_x86_64.whl#sha256=a6da431f309519153956387c58f8a5c820145a6feb10d6c893ce3a68351c80e6 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,270   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/24/29/35cee9a1180ff075af80ccc87b5566a2092c9c12a71173c6bb6a34993a08/pytrimal-0.2.1-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=f6e58c0f398fa6c3493239741f43be0973cc6a6014d148689502777c481d5b56 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,271   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/f2/90/09ac93f0ef94860d8348d6713b1125136cf511bf1f0eccdc6b4c8448f85b/pytrimal-0.2.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=0460455f29db67aa545a28efb769c6027b0e8cac5eceb66e1d4670dc3bb76cb7 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,272   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/38/01/2ba077aa3edddca7810cbba1838adb1e0de28e2e6a2742818e37de43bb55/pytrimal-0.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=5bb0d31d144f87649f76bbbdf08ef5aba9027436e4254cb979de292060d8c7eb (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,273   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/46/45/0136189c7ed0487d6e61b45b001f6c9f1bb4456d0fce2e12f790c29e9298/pytrimal-0.2.1-cp39-cp39-macosx_10_15_x86_64.whl#sha256=c0f0a0dc00734947d97442fc270ecaf54c1dbfe290c2b3bbe9dd3e089a959924 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,284   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/be/ad/c3309a44f3a6a73cbffdc5705b309d384588f226eb31d2aa97c6cf9b45e2/pytrimal-0.2.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=3df1903e7dabbc8c21c8512e0f9eae8f742988d822d75e4c61f8243ae81ebd9f (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,289   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ff/ed/af317c698e535d923630672e06a7795612554b587d9532962425ef41c94a/pytrimal-0.2.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=e72c9aa401d23ecb610059b868c5216851e33aa0039c2b53d1cdcd214c1aed66 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,294   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/7c/c6/962dff8791c1cdf289e52c68d9a4d5b38c6e990c388939c74bffff9bfe7b/pytrimal-0.3.0-cp35-cp35m-manylinux2010_x86_64.whl#sha256=eb854faa5c244e97d4dca03991c00b7ee408c27687673c0667e185986928d25f (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,295   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/7e/42/7385aa3ed7698157898349dcb45e618260167f3dc12ee2028ce0dd40df34/pytrimal-0.3.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=2674162bcdda65b53869ad10401c2513b1ef568c1d321b709a5204d350c09b74 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,295   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/3b/80/6210b9b18f0e36b46d759854314fed324bf76460def8af0a89466e87972e/pytrimal-0.3.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=9ef03733e078e2d7075ce9964bf4a1fd61010122bf02fa27f30140c9af659ab5 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,306   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/7f/9b/90e8581928a03ae6ebfb56934351f118179d8aaaaa8e5b5d9fa077175232/pytrimal-0.4.0-cp35-cp35m-macosx_10_14_x86_64.whl#sha256=0bfe5a80411e6609a1835f9786a56b3aefb0c12f951a25f45bee657001ed3249 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,312   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d2/65/d27058747d11e1fbdc6ad4aa8ba467267b0c445b7ae9d08135cf4f75f31e/pytrimal-0.4.0-cp39-cp39-macosx_10_15_x86_64.whl#sha256=056c01cfa6cf280f222e076742b2e356d1c960bf9d840b1f41a7e4cc391ecfe3 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,315   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ce/5d/1f39de40511eede1e4599d74ff4003913240cec065798b250c021148f3d3/pytrimal-0.4.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=47b5e69b5c91c60ce7eed59808f2028df8c733a2ea5397f8c86e4f3a7a6cc5ad (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,318   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/3e/67/9b677c240287cc8f5c632ede2a2f9e51192ee246faba7bfcce687c766403/pytrimal-0.5.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=70ad254de4876d4a74e030cf905f2366bb74a711dcefc70d84aaa8c614b30c21 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
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2022-10-16T00:27:37,373   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/4d/4f/6cc77740abe2647531b9fd63368bee1c3de19ba2150601889d0de16f4122/pytrimal-0.5.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=ae7f06cb05f0ce5934b84725baaeb12b1215f6d3de02d80d261ed6ea39b115cb (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,373   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/02/5a/9c114bedeff7f5c851c2130bf1eddfc2819ebcbc7fa1f581b6e5a1533f99/pytrimal-0.5.4-cp38-cp38-macosx_10_15_x86_64.whl#sha256=8887e452511cfb387992338be0998b3153828128c9298e768d527427028f95de (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,374   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/28/25/cc850e1942d85d4154b5e8bbe939e7a5750b66936cc8109ab8bc2a22a5d0/pytrimal-0.5.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=1ea55438e7681331637337c14fa01e837928adbbbfac92e402aeb960f825ad43 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,374   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/14/f9/c13a5130569f0f6c6689bac6bcccc98168fb3e038e902d29537da3c41667/pytrimal-0.5.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=44476a48c760029609fd11134b440e4b79a9a7ff97c30403a95dfa2ba435037f (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,375   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/12/81/53fbe34d4045e7a9dd47271323a02f70ada137aba52bdfaae853c635f407/pytrimal-0.5.4-cp39-cp39-macosx_10_15_x86_64.whl#sha256=6120b57218814f8b45b25979394a38cf1b30038ed09d00b4c54ab513217d3940 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,375   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/65/9f/89a9ab43f9b86716887d4a2b0c76e183ea85ff3febdfec82d831908e9112/pytrimal-0.5.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=8200808278cb2e884b550984b6f4764e3b8bfdd181d91ca7b844206f9340f699 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,376   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/88/03/e6b18b4de0fff31b5bb59c16b1ccaf16c0ea6e469ff375c615e036275e08/pytrimal-0.5.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=84fd4ea1f1e5be403b7b22324460dd9368fd7319cfb44bbd3df909af15d6f94b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,376   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/0d/1f/b8393cb2f061f79dc3c9e729b1abb580e7c3cb78cdfff3fd36b6f90d055a/pytrimal-0.5.4-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=6afcab8372a0c47c468d9760c3222beb535c003c34449514906018fa5166b178 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,377   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/cc/0e/fb840c1df44cde1427d6597872016d754f6ac162bccaf6fab5ecf9129fc3/pytrimal-0.5.4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=9b3beee6e8d1cf08bd5668277ebd2fd31d7b6b06ff8df1155a94532143978b2d (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,377   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/88/aa/0b0205e37d4a4dafefcd4c0e1e5719dfb72a407555b39f9d9f67d201ef6a/pytrimal-0.5.4-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=c132544dc69da9d35587bd8d12ff645b2d3c09a775422657189c5eeee3d7645c (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,378   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/19/5d/c0a66d3b37ab7910c2eca8b9ff6f809635fbb974ea7cc206abb80c0faeeb/pytrimal-0.5.4-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=b74345fdd85db3e8f4a2d2dcd6902c412759b8dbcdb565f8c686fc231d8a88c7 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,378   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ca/96/1facda383444aeaed6377e9e0ca418df5d640ac105eef64604c3990b14e6/pytrimal-0.5.4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=ae5bf4bd5c8822ba0b2a9d6f1eb07cf2f24c073814d1547a5d8eb4f8d4cc82c6 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,379   Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d5/ca/61e2e7274ae598576d5d544e10e9c33147732e403ff4759b3478d585d56e/pytrimal-0.5.4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=04d93e1938c00cfb85395f3c5f040f652ef2ccdcbaa0e2891bacc833f2a4a11e (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,380   Found link https://files.pythonhosted.org/packages/63/6e/4edab3d120705ff7ebfc855f0e6b0e38c411effaa6ef431cf2f70b019057/pytrimal-0.5.4.tar.gz#sha256=45c79eacd6102765d5e1f644efbde3e2a3fb710484d5aef50ddd9da63c6dfa0b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5), version: 0.5.4
2022-10-16T00:27:37,381 Fetching project page and analyzing links: https://www.piwheels.org/simple/pytrimal/
2022-10-16T00:27:37,382 Getting page https://www.piwheels.org/simple/pytrimal/
2022-10-16T00:27:37,384 Found index url https://www.piwheels.org/simple
2022-10-16T00:27:37,696   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.4-cp37-cp37m-linux_armv7l.whl#sha256=3c4a238e9091e4af0f018445e263e367fcd09b80c5f113975345cb8d54621fc0 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,697   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.4-cp37-cp37m-linux_armv6l.whl#sha256=3c4a238e9091e4af0f018445e263e367fcd09b80c5f113975345cb8d54621fc0 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,698   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.3-cp39-cp39-linux_armv7l.whl#sha256=96414c6ad503cbafadc0cd909c065d410ab2460dc7ee7c1c664f2aab64c19323 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,698   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.3-cp39-cp39-linux_armv6l.whl#sha256=96414c6ad503cbafadc0cd909c065d410ab2460dc7ee7c1c664f2aab64c19323 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,699   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.3-cp37-cp37m-linux_armv7l.whl#sha256=790e0a5ba04a025d1521570bb479bbe5dd3f543fc0279b06d34b8dd8d78a9078 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,699   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.3-cp37-cp37m-linux_armv6l.whl#sha256=790e0a5ba04a025d1521570bb479bbe5dd3f543fc0279b06d34b8dd8d78a9078 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,700   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.2-cp39-cp39-linux_armv7l.whl#sha256=d8c4cbf91f4f60cc31cf104c877312bb091c4cedb0b11340fb15ec9409092560 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,700   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.2-cp39-cp39-linux_armv6l.whl#sha256=d8c4cbf91f4f60cc31cf104c877312bb091c4cedb0b11340fb15ec9409092560 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,701   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.2-cp37-cp37m-linux_armv7l.whl#sha256=4fcc57ac1551e91658c051a7f6a26c64e84e5c799c65c2c660b060a73649bbde (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,701   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.2-cp37-cp37m-linux_armv6l.whl#sha256=4fcc57ac1551e91658c051a7f6a26c64e84e5c799c65c2c660b060a73649bbde (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,702   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.1-cp39-cp39-linux_armv7l.whl#sha256=33634cd2d6a05efa31c4f7a64d98b50745ed67dd434f6f1a26d59d8380c782ed (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,702   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.1-cp39-cp39-linux_armv6l.whl#sha256=33634cd2d6a05efa31c4f7a64d98b50745ed67dd434f6f1a26d59d8380c782ed (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,703   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.1-cp37-cp37m-linux_armv7l.whl#sha256=7dc30c4514d830c7d50f5da9578ac26dc4c99658610a7a140859c6e95ffe5210 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,703   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.1-cp37-cp37m-linux_armv6l.whl#sha256=7dc30c4514d830c7d50f5da9578ac26dc4c99658610a7a140859c6e95ffe5210 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,704   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.0-cp39-cp39-linux_armv7l.whl#sha256=72fc3420a99a380479e4ed1919c0fbee2bbd9e00fe33238946ee59869bd9a9ba (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,704   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.0-cp39-cp39-linux_armv6l.whl#sha256=72fc3420a99a380479e4ed1919c0fbee2bbd9e00fe33238946ee59869bd9a9ba (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,705   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.0-cp37-cp37m-linux_armv7l.whl#sha256=49ce53bfa624c31e9f670a3442d3d4023bcc17f0e86c09dee3e81a901d0ef6b3 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,705   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.5.0-cp37-cp37m-linux_armv6l.whl#sha256=49ce53bfa624c31e9f670a3442d3d4023bcc17f0e86c09dee3e81a901d0ef6b3 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,706   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.4.0-cp39-cp39-linux_armv7l.whl#sha256=3cff96406b8ddeea7cbb51046bd603ab3ed9c0bb004cb90d1a665436624b2b56 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,706   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.4.0-cp39-cp39-linux_armv6l.whl#sha256=3cff96406b8ddeea7cbb51046bd603ab3ed9c0bb004cb90d1a665436624b2b56 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,707   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.4.0-cp37-cp37m-linux_armv7l.whl#sha256=7f78e36e834cd71b9c6157802ae3bf5bec7dd411d544fe6b2c01c05143727d59 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,707   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.4.0-cp37-cp37m-linux_armv6l.whl#sha256=7f78e36e834cd71b9c6157802ae3bf5bec7dd411d544fe6b2c01c05143727d59 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,708   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.2-cp39-cp39-linux_armv7l.whl#sha256=61a18089e1538bafb91947f7c54942052cdebd640068daae8f6fd8559ee1821c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,708   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.2-cp39-cp39-linux_armv6l.whl#sha256=61a18089e1538bafb91947f7c54942052cdebd640068daae8f6fd8559ee1821c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,709   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.2-cp37-cp37m-linux_armv7l.whl#sha256=5f3c8d40349fe09f1f02e9392a1bc6dfe598428ccca63cc687102270f4b8bcc7 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,709   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.2-cp37-cp37m-linux_armv6l.whl#sha256=5f3c8d40349fe09f1f02e9392a1bc6dfe598428ccca63cc687102270f4b8bcc7 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,710   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.2-cp35-cp35m-linux_armv7l.whl#sha256=2c89565387151ab91f065fd81e6801a59cb0a692e1d518a4bdbe1b819d4e3bb9 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,710   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.2-cp35-cp35m-linux_armv6l.whl#sha256=2c89565387151ab91f065fd81e6801a59cb0a692e1d518a4bdbe1b819d4e3bb9 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,711   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.1-cp39-cp39-linux_armv7l.whl#sha256=06890ee257c9d009b402620382086847b440e92a339043e6b759dda8545f6ff6 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,711   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.1-cp39-cp39-linux_armv6l.whl#sha256=06890ee257c9d009b402620382086847b440e92a339043e6b759dda8545f6ff6 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,712   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.1-cp37-cp37m-linux_armv7l.whl#sha256=87c41102be591a5dcb6efdf6807ea38a522ec3cc653f29af275f01d2b4e8d4fc (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,712   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.1-cp37-cp37m-linux_armv6l.whl#sha256=87c41102be591a5dcb6efdf6807ea38a522ec3cc653f29af275f01d2b4e8d4fc (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,713   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.1-cp35-cp35m-linux_armv7l.whl#sha256=7719393288e4b7d58df66be1b835f01bc962a0a64b61adab766ce32ffa6a3f0e (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,713   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.1-cp35-cp35m-linux_armv6l.whl#sha256=7719393288e4b7d58df66be1b835f01bc962a0a64b61adab766ce32ffa6a3f0e (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,714   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=f5b150f17ead1887b6682721c33fa5cd7a8ab0d03d55d68176e11f3d0e17db43 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,714   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=f5b150f17ead1887b6682721c33fa5cd7a8ab0d03d55d68176e11f3d0e17db43 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,715   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.0-cp37-cp37m-linux_armv7l.whl#sha256=b22cc6f8f6e39214cc9d6ef2778b8811ddb859aeca9ad030b64d78cc83816438 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,715   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.0-cp37-cp37m-linux_armv6l.whl#sha256=b22cc6f8f6e39214cc9d6ef2778b8811ddb859aeca9ad030b64d78cc83816438 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,716   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.0-cp35-cp35m-linux_armv7l.whl#sha256=c2e192c5e15e398eb8fcf987e378ac23645cf88ae7b43798f959edf36711e847 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,716   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.2.0-cp35-cp35m-linux_armv6l.whl#sha256=c2e192c5e15e398eb8fcf987e378ac23645cf88ae7b43798f959edf36711e847 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,716   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp39-cp39-linux_armv7l.whl#sha256=8335602183caad582c8928ea691b7be0671b701f02fd9489681d90efd6708863 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,717   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp39-cp39-linux_armv6l.whl#sha256=8335602183caad582c8928ea691b7be0671b701f02fd9489681d90efd6708863 (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,717   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp37-cp37m-linux_armv7l.whl#sha256=37809e659b1a6d0ae65708c8315d044d8b3ed5fa169c916d23a800715869074c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,718   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp37-cp37m-linux_armv6l.whl#sha256=37809e659b1a6d0ae65708c8315d044d8b3ed5fa169c916d23a800715869074c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,718   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp35-cp35m-linux_armv7l.whl#sha256=4a3dcfa05641310e339af037687c7171ffa116dab65617ebd2d9661d937375ee (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,719   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp35-cp35m-linux_armv6l.whl#sha256=4a3dcfa05641310e339af037687c7171ffa116dab65617ebd2d9661d937375ee (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,719   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=c54c9649d97022e8ce47cce412b180621f9a77399bf9c58ef855e08f913a237f (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,720   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=c54c9649d97022e8ce47cce412b180621f9a77399bf9c58ef855e08f913a237f (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,720   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=37299a0c9633838823df1040fad4ea675ea5d693df9331240e4dc04f1797003c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,721   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=37299a0c9633838823df1040fad4ea675ea5d693df9331240e4dc04f1797003c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,721   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp35-cp35m-linux_armv7l.whl#sha256=ed62deb3aed080a21ff74516c43aecc431d77412aff60dbbc4ba6282beee2b7d (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,722   Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp35-cp35m-linux_armv6l.whl#sha256=ed62deb3aed080a21ff74516c43aecc431d77412aff60dbbc4ba6282beee2b7d (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5)
2022-10-16T00:27:37,722 Skipping link: not a file: https://www.piwheels.org/simple/pytrimal/
2022-10-16T00:27:37,723 Skipping link: not a file: https://pypi.org/simple/pytrimal/
2022-10-16T00:27:37,771 Given no hashes to check 1 links for project 'pytrimal': discarding no candidates
2022-10-16T00:27:37,813 Collecting pytrimal==0.5.4
2022-10-16T00:27:37,818   Created temporary directory: /tmp/pip-unpack-sxqb7iu4
2022-10-16T00:27:37,911   Downloading pytrimal-0.5.4.tar.gz (8.7 MB)
2022-10-16T00:27:46,964   Added pytrimal==0.5.4 from https://files.pythonhosted.org/packages/63/6e/4edab3d120705ff7ebfc855f0e6b0e38c411effaa6ef431cf2f70b019057/pytrimal-0.5.4.tar.gz#sha256=45c79eacd6102765d5e1f644efbde3e2a3fb710484d5aef50ddd9da63c6dfa0b to build tracker '/tmp/pip-build-tracker-aj8dz6qd'
2022-10-16T00:27:46,974   Created temporary directory: /tmp/pip-build-env-t6r0ej0e
2022-10-16T00:27:46,996   Created temporary directory: /tmp/pip-standalone-pip-klur_z0b
2022-10-16T00:27:49,516   Installing build dependencies: started
2022-10-16T00:27:49,518   Running command pip subprocess to install build dependencies
2022-10-16T00:28:02,755   Using pip 22.1.2 from /tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip (python 3.9)
2022-10-16T00:28:04,490   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-16T00:28:08,627   Collecting setuptools>=46.4
2022-10-16T00:28:08,949     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB)
2022-10-16T00:28:12,856   Collecting cython~=0.29.16
2022-10-16T00:28:13,887     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-10-16T00:28:22,426   Installing collected packages: setuptools, cython
2022-10-16T00:28:34,343     Creating /tmp/pip-build-env-t6r0ej0e/overlay/bin
2022-10-16T00:28:34,347     changing mode of /tmp/pip-build-env-t6r0ej0e/overlay/bin/cygdb to 755
2022-10-16T00:28:34,352     changing mode of /tmp/pip-build-env-t6r0ej0e/overlay/bin/cython to 755
2022-10-16T00:28:34,356     changing mode of /tmp/pip-build-env-t6r0ej0e/overlay/bin/cythonize to 755
2022-10-16T00:28:34,403   Successfully installed cython-0.29.32 setuptools-65.5.0
2022-10-16T00:28:34,616   --- Logging error ---
2022-10-16T00:28:34,634   Traceback (most recent call last):
2022-10-16T00:28:34,635     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-10-16T00:28:34,635       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-10-16T00:28:34,636     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-10-16T00:28:34,636       extend(render(renderable, render_options))
2022-10-16T00:28:34,637     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-10-16T00:28:34,637       for render_output in iter_render:
2022-10-16T00:28:34,637     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-10-16T00:28:34,638       for line in lines:
2022-10-16T00:28:34,638     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-10-16T00:28:34,638       for segment in segments:
2022-10-16T00:28:34,638     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-10-16T00:28:34,639       renderable = rich_cast(renderable)
2022-10-16T00:28:34,639     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-10-16T00:28:34,639       renderable = cast_method()
2022-10-16T00:28:34,640     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-10-16T00:28:34,640       pip_cmd = get_best_invocation_for_this_pip()
2022-10-16T00:28:34,640     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-10-16T00:28:34,641       if found_executable and os.path.samefile(
2022-10-16T00:28:34,641     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-10-16T00:28:34,641       s2 = os.stat(f2)
2022-10-16T00:28:34,642   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-10-16T00:28:34,642   Call stack:
2022-10-16T00:28:34,646     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-10-16T00:28:34,647       return _run_code(code, main_globals, None,
2022-10-16T00:28:34,647     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-10-16T00:28:34,647       exec(code, run_globals)
2022-10-16T00:28:34,648     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-10-16T00:28:34,648       sys.exit(_main())
2022-10-16T00:28:34,648     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-10-16T00:28:34,649       return command.main(cmd_args)
2022-10-16T00:28:34,649     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-10-16T00:28:34,649       return self._main(args)
2022-10-16T00:28:34,650     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-10-16T00:28:34,650       self.handle_pip_version_check(options)
2022-10-16T00:28:34,650     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-10-16T00:28:34,651       pip_self_version_check(session, options)
2022-10-16T00:28:34,651     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-10-16T00:28:34,651       logger.info("[present-rich] %s", upgrade_prompt)
2022-10-16T00:28:34,652     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-10-16T00:28:34,652       self._log(INFO, msg, args, **kwargs)
2022-10-16T00:28:34,652     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-10-16T00:28:34,652       self.handle(record)
2022-10-16T00:28:34,653     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-10-16T00:28:34,653       self.callHandlers(record)
2022-10-16T00:28:34,653     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-10-16T00:28:34,654       hdlr.handle(record)
2022-10-16T00:28:34,654     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-10-16T00:28:34,654       self.emit(record)
2022-10-16T00:28:34,654     File "/tmp/pip-standalone-pip-klur_z0b/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-10-16T00:28:34,655       self.handleError(record)
2022-10-16T00:28:34,655   Message: '[present-rich] %s'
2022-10-16T00:28:34,655   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-10-16T00:28:35,236   Installing build dependencies: finished with status 'done'
2022-10-16T00:28:35,264   Getting requirements to build wheel: started
2022-10-16T00:28:35,266   Running command Getting requirements to build wheel
2022-10-16T00:28:38,204   Getting requirements to build wheel: finished with status 'done'
2022-10-16T00:28:38,243   Created temporary directory: /tmp/pip-standalone-pip-plfxhdmf
2022-10-16T00:28:40,441   Installing backend dependencies: started
2022-10-16T00:28:40,444   Running command pip subprocess to install backend dependencies
2022-10-16T00:28:51,744   Using pip 22.1.2 from /tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip (python 3.9)
2022-10-16T00:28:53,484   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-16T00:28:54,377   Collecting wheel
2022-10-16T00:28:54,412     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-10-16T00:29:01,820   Installing collected packages: wheel
2022-10-16T00:29:02,107     Creating /tmp/pip-build-env-t6r0ej0e/normal/bin
2022-10-16T00:29:02,111     changing mode of /tmp/pip-build-env-t6r0ej0e/normal/bin/wheel to 755
2022-10-16T00:29:02,138   Successfully installed wheel-0.37.1
2022-10-16T00:29:02,333   --- Logging error ---
2022-10-16T00:29:02,348   Traceback (most recent call last):
2022-10-16T00:29:02,349     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-10-16T00:29:02,349       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-10-16T00:29:02,349     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-10-16T00:29:02,350       extend(render(renderable, render_options))
2022-10-16T00:29:02,350     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-10-16T00:29:02,350       for render_output in iter_render:
2022-10-16T00:29:02,351     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-10-16T00:29:02,351       for line in lines:
2022-10-16T00:29:02,351     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-10-16T00:29:02,352       for segment in segments:
2022-10-16T00:29:02,352     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-10-16T00:29:02,352       renderable = rich_cast(renderable)
2022-10-16T00:29:02,352     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-10-16T00:29:02,353       renderable = cast_method()
2022-10-16T00:29:02,353     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-10-16T00:29:02,354       pip_cmd = get_best_invocation_for_this_pip()
2022-10-16T00:29:02,354     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-10-16T00:29:02,354       if found_executable and os.path.samefile(
2022-10-16T00:29:02,355     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-10-16T00:29:02,355       s2 = os.stat(f2)
2022-10-16T00:29:02,355   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-10-16T00:29:02,356   Call stack:
2022-10-16T00:29:02,359     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-10-16T00:29:02,360       return _run_code(code, main_globals, None,
2022-10-16T00:29:02,360     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-10-16T00:29:02,361       exec(code, run_globals)
2022-10-16T00:29:02,361     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-10-16T00:29:02,361       sys.exit(_main())
2022-10-16T00:29:02,362     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-10-16T00:29:02,362       return command.main(cmd_args)
2022-10-16T00:29:02,362     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-10-16T00:29:02,362       return self._main(args)
2022-10-16T00:29:02,363     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-10-16T00:29:02,363       self.handle_pip_version_check(options)
2022-10-16T00:29:02,363     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-10-16T00:29:02,364       pip_self_version_check(session, options)
2022-10-16T00:29:02,364     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-10-16T00:29:02,364       logger.info("[present-rich] %s", upgrade_prompt)
2022-10-16T00:29:02,365     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-10-16T00:29:02,365       self._log(INFO, msg, args, **kwargs)
2022-10-16T00:29:02,365     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-10-16T00:29:02,365       self.handle(record)
2022-10-16T00:29:02,366     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-10-16T00:29:02,366       self.callHandlers(record)
2022-10-16T00:29:02,366     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-10-16T00:29:02,367       hdlr.handle(record)
2022-10-16T00:29:02,367     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-10-16T00:29:02,367       self.emit(record)
2022-10-16T00:29:02,367     File "/tmp/pip-standalone-pip-plfxhdmf/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-10-16T00:29:02,368       self.handleError(record)
2022-10-16T00:29:02,368   Message: '[present-rich] %s'
2022-10-16T00:29:02,368   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-10-16T00:29:02,821   Installing backend dependencies: finished with status 'done'
2022-10-16T00:29:02,844   Created temporary directory: /tmp/pip-modern-metadata-88x4y7ym
2022-10-16T00:29:02,850   Preparing metadata (pyproject.toml): started
2022-10-16T00:29:02,852   Running command Preparing metadata (pyproject.toml)
2022-10-16T00:29:07,819   running dist_info
2022-10-16T00:29:08,425   creating /tmp/pip-modern-metadata-88x4y7ym/pytrimal.egg-info
2022-10-16T00:29:09,008   writing /tmp/pip-modern-metadata-88x4y7ym/pytrimal.egg-info/PKG-INFO
2022-10-16T00:29:09,567   writing dependency_links to /tmp/pip-modern-metadata-88x4y7ym/pytrimal.egg-info/dependency_links.txt
2022-10-16T00:29:12,877   writing top-level names to /tmp/pip-modern-metadata-88x4y7ym/pytrimal.egg-info/top_level.txt
2022-10-16T00:29:12,879   writing manifest file '/tmp/pip-modern-metadata-88x4y7ym/pytrimal.egg-info/SOURCES.txt'
2022-10-16T00:29:13,569   reading manifest file '/tmp/pip-modern-metadata-88x4y7ym/pytrimal.egg-info/SOURCES.txt'
2022-10-16T00:29:13,572   reading manifest template 'MANIFEST.in'
2022-10-16T00:29:14,737   warning: no previously-included files matching '*.html' found under directory 'pytrimal'
2022-10-16T00:29:14,746   warning: no files found matching '*.pxd' under directory 'pytrimal/patch'
2022-10-16T00:29:14,804   adding license file 'COPYING'
2022-10-16T00:29:14,841   writing manifest file '/tmp/pip-modern-metadata-88x4y7ym/pytrimal.egg-info/SOURCES.txt'
2022-10-16T00:29:14,845   creating '/tmp/pip-modern-metadata-88x4y7ym/pytrimal-0.5.4.dist-info'
2022-10-16T00:29:15,041   adding license file "COPYING" (matched pattern "COPYING*")
2022-10-16T00:29:15,298   Preparing metadata (pyproject.toml): finished with status 'done'
2022-10-16T00:29:15,315   Source in /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb has version 0.5.4, which satisfies requirement pytrimal==0.5.4 from https://files.pythonhosted.org/packages/63/6e/4edab3d120705ff7ebfc855f0e6b0e38c411effaa6ef431cf2f70b019057/pytrimal-0.5.4.tar.gz#sha256=45c79eacd6102765d5e1f644efbde3e2a3fb710484d5aef50ddd9da63c6dfa0b
2022-10-16T00:29:15,317   Removed pytrimal==0.5.4 from https://files.pythonhosted.org/packages/63/6e/4edab3d120705ff7ebfc855f0e6b0e38c411effaa6ef431cf2f70b019057/pytrimal-0.5.4.tar.gz#sha256=45c79eacd6102765d5e1f644efbde3e2a3fb710484d5aef50ddd9da63c6dfa0b from build tracker '/tmp/pip-build-tracker-aj8dz6qd'
2022-10-16T00:29:15,332 Created temporary directory: /tmp/pip-unpack-70pzs8to
2022-10-16T00:29:15,333 Building wheels for collected packages: pytrimal
2022-10-16T00:29:15,343   Created temporary directory: /tmp/pip-wheel-9fxcixlx
2022-10-16T00:29:15,344   Destination directory: /tmp/pip-wheel-9fxcixlx
2022-10-16T00:29:15,349   Building wheel for pytrimal (pyproject.toml): started
2022-10-16T00:29:15,351   Running command Building wheel for pytrimal (pyproject.toml)
2022-10-16T00:29:19,960   running bdist_wheel
2022-10-16T00:29:20,057   running build
2022-10-16T00:29:20,058   running build_py
2022-10-16T00:29:20,664   creating build
2022-10-16T00:29:20,665   creating build/lib.linux-armv7l-cpython-39
2022-10-16T00:29:20,666   creating build/lib.linux-armv7l-cpython-39/pytrimal
2022-10-16T00:29:20,668   copying pytrimal/_version.py -> build/lib.linux-armv7l-cpython-39/pytrimal
2022-10-16T00:29:20,672   copying pytrimal/__init__.py -> build/lib.linux-armv7l-cpython-39/pytrimal
2022-10-16T00:29:20,677   creating build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,679   copying pytrimal/tests/test_automatic_trimmer.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,683   copying pytrimal/tests/test_overlap_trimmer.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,687   copying pytrimal/tests/__main__.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,690   copying pytrimal/tests/test_manual_trimmer.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,694   copying pytrimal/tests/test_similarity_matrix.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,698   copying pytrimal/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,701   copying pytrimal/tests/test_representative_trimmer.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,705   copying pytrimal/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,708   copying pytrimal/tests/test_alignment.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,714   creating build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,716   copying pytrimal/tests/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,736   copying pytrimal/py.typed -> build/lib.linux-armv7l-cpython-39/pytrimal
2022-10-16T00:29:20,740   copying pytrimal/_trimal.pyi -> build/lib.linux-armv7l-cpython-39/pytrimal
2022-10-16T00:29:20,745   copying pytrimal/tests/requirements.txt -> build/lib.linux-armv7l-cpython-39/pytrimal/tests
2022-10-16T00:29:20,749   copying pytrimal/tests/data/ENOG411BWBU.id70.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,758   copying pytrimal/tests/data/ENOG411BWBU.seq40.res60.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,776   copying pytrimal/tests/data/ENOG411BWBU.id50.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,781   copying pytrimal/tests/data/halorhodopsin.afa -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,793   copying pytrimal/tests/data/ENOG411BWBU.strictplus.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,805   copying pytrimal/tests/data/ENOG411BWBU.automated1.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,819   copying pytrimal/tests/data/PF12574.full.afa -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,823   copying pytrimal/tests/data/ENOG411BWBU.maxidentity75.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,834   copying pytrimal/tests/data/example.001.gt90.w3.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,838   copying pytrimal/tests/data/ENOG411BWBU.clusters10.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,843   copying pytrimal/tests/data/ENOG411BWBU.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,862   copying pytrimal/tests/data/ENOG411BWBU.gappyout.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,879   copying pytrimal/tests/data/ENOG411BWBU.seq80.res80.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,897   copying pytrimal/tests/data/ENOG411BWBU.clusters5.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,902   copying pytrimal/tests/data/ENOG411BWBU.cons60.gt90.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,916   copying pytrimal/tests/data/ENOG411BWBU.strict.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,931   copying pytrimal/tests/data/ENOG411BWBU.noduplicateseqs.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,951   copying pytrimal/tests/data/ENOG411BWBU.cons40.gt40.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,965   copying pytrimal/tests/data/example.001.AA.clw -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,969   copying pytrimal/tests/data/pam70.json -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:20,973   copying pytrimal/tests/data/ENOG411BWBU.noallgaps.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data
2022-10-16T00:29:21,000   running build_clib
2022-10-16T00:29:21,012   creating build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:21,014   generating build/temp.linux-armv7l-cpython-39/libcpu_features.a from vendor/cpu_features/src/impl_arm_linux_or_android.c, vendor/cpu_features/src/filesystem.c, vendor/cpu_features/src/stack_line_reader.c, vendor/cpu_features/src/string_view.c, vendor/cpu_features/src/copy.inl, vendor/cpu_features/src/define_introspection.inl, vendor/cpu_features/src/define_introspection_and_hwcaps.inl, vendor/cpu_features/src/equals.inl, vendor/cpu_features/src/impl_x86__base_implementation.inl
2022-10-16T00:29:21,014   building cpu_features with unix compiler
2022-10-16T00:29:21,017   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_getauxval.c -o build/temp.linux-armv7l-cpython-39/have_getauxval.o
2022-10-16T00:29:21,325   arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_getauxval.o -o build/temp.linux-armv7l-cpython-39/have_getauxval
2022-10-16T00:29:21,562   checking whether function 'getauxval' is available... yes
2022-10-16T00:29:21,567   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_dlclose.c -o build/temp.linux-armv7l-cpython-39/have_dlclose.o
2022-10-16T00:29:21,682   build/temp.linux-armv7l-cpython-39/have_dlclose.c: In function ‘main’:
2022-10-16T00:29:21,683   build/temp.linux-armv7l-cpython-39/have_dlclose.c:4:21: warning: null argument where non-null required (argument 1) [-Wnonnull]
2022-10-16T00:29:21,684       4 |                     dlclose(0);
2022-10-16T00:29:21,684         |                     ^~~~~~~
2022-10-16T00:29:21,770   arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_dlclose.o -o build/temp.linux-armv7l-cpython-39/have_dlclose
2022-10-16T00:29:21,982   /usr/bin/ld: build/temp.linux-armv7l-cpython-39/have_dlclose.o: in function `main':
2022-10-16T00:29:21,982   /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/build/temp.linux-armv7l-cpython-39/have_dlclose.c:4: undefined reference to `dlclose'
2022-10-16T00:29:21,993   collect2: error: ld returned 1 exit status
2022-10-16T00:29:21,997   checking whether function 'dlclose' is available... no
2022-10-16T00:29:22,000   generating build/temp.linux-armv7l-cpython-39/impl_arm_linux_or_android.c from vendor/cpu_features/src/impl_arm_linux_or_android.c
2022-10-16T00:29:22,002   copying vendor/cpu_features/src/impl_arm_linux_or_android.c -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,006   generating build/temp.linux-armv7l-cpython-39/filesystem.c from vendor/cpu_features/src/filesystem.c
2022-10-16T00:29:22,008   copying vendor/cpu_features/src/filesystem.c -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,011   generating build/temp.linux-armv7l-cpython-39/stack_line_reader.c from vendor/cpu_features/src/stack_line_reader.c
2022-10-16T00:29:22,012   copying vendor/cpu_features/src/stack_line_reader.c -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,016   generating build/temp.linux-armv7l-cpython-39/string_view.c from vendor/cpu_features/src/string_view.c
2022-10-16T00:29:22,017   copying vendor/cpu_features/src/string_view.c -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,021   generating build/temp.linux-armv7l-cpython-39/copy.inl from vendor/cpu_features/src/copy.inl
2022-10-16T00:29:22,022   copying vendor/cpu_features/src/copy.inl -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,025   generating build/temp.linux-armv7l-cpython-39/define_introspection.inl from vendor/cpu_features/src/define_introspection.inl
2022-10-16T00:29:22,027   copying vendor/cpu_features/src/define_introspection.inl -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,030   generating build/temp.linux-armv7l-cpython-39/define_introspection_and_hwcaps.inl from vendor/cpu_features/src/define_introspection_and_hwcaps.inl
2022-10-16T00:29:22,031   copying vendor/cpu_features/src/define_introspection_and_hwcaps.inl -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,034   generating build/temp.linux-armv7l-cpython-39/equals.inl from vendor/cpu_features/src/equals.inl
2022-10-16T00:29:22,036   copying vendor/cpu_features/src/equals.inl -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,039   generating build/temp.linux-armv7l-cpython-39/impl_x86__base_implementation.inl from vendor/cpu_features/src/impl_x86__base_implementation.inl
2022-10-16T00:29:22,040   copying vendor/cpu_features/src/impl_x86__base_implementation.inl -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,050   generating build/temp.linux-armv7l-cpython-39/hwcaps.c from vendor/cpu_features/src/hwcaps.c
2022-10-16T00:29:22,051   copying vendor/cpu_features/src/hwcaps.c -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:22,132   generating build/temp.linux-armv7l-cpython-39/impl_arm_linux_or_android.o from build/temp.linux-armv7l-cpython-39/impl_arm_linux_or_android.c
2022-10-16T00:29:22,133   generating build/temp.linux-armv7l-cpython-39/stack_line_reader.o from build/temp.linux-armv7l-cpython-39/stack_line_reader.c
2022-10-16T00:29:22,134   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTACK_LINE_READER_BUFFER_SIZE=1024 -DHAVE_STRONG_GETAUXVAL=1 -Ivendor/cpu_features/include -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/stack_line_reader.c -o build/temp.linux-armv7l-cpython-39/stack_line_reader.o
2022-10-16T00:29:22,135   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTACK_LINE_READER_BUFFER_SIZE=1024 -DHAVE_STRONG_GETAUXVAL=1 -Ivendor/cpu_features/include -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/impl_arm_linux_or_android.c -o build/temp.linux-armv7l-cpython-39/impl_arm_linux_or_android.o
2022-10-16T00:29:22,136   generating build/temp.linux-armv7l-cpython-39/filesystem.o from build/temp.linux-armv7l-cpython-39/filesystem.c
2022-10-16T00:29:22,147   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTACK_LINE_READER_BUFFER_SIZE=1024 -DHAVE_STRONG_GETAUXVAL=1 -Ivendor/cpu_features/include -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/filesystem.c -o build/temp.linux-armv7l-cpython-39/filesystem.o
2022-10-16T00:29:22,150   generating build/temp.linux-armv7l-cpython-39/string_view.o from build/temp.linux-armv7l-cpython-39/string_view.c
2022-10-16T00:29:22,151   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTACK_LINE_READER_BUFFER_SIZE=1024 -DHAVE_STRONG_GETAUXVAL=1 -Ivendor/cpu_features/include -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/string_view.c -o build/temp.linux-armv7l-cpython-39/string_view.o
2022-10-16T00:29:22,619   generating build/temp.linux-armv7l-cpython-39/hwcaps.o from build/temp.linux-armv7l-cpython-39/hwcaps.c
2022-10-16T00:29:22,621   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DSTACK_LINE_READER_BUFFER_SIZE=1024 -DHAVE_STRONG_GETAUXVAL=1 -Ivendor/cpu_features/include -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/hwcaps.c -o build/temp.linux-armv7l-cpython-39/hwcaps.o
2022-10-16T00:29:23,558   generating build/temp.linux-armv7l-cpython-39/libcpu_features.a from build/temp.linux-armv7l-cpython-39/impl_arm_linux_or_android.o, build/temp.linux-armv7l-cpython-39/filesystem.o, build/temp.linux-armv7l-cpython-39/stack_line_reader.o, build/temp.linux-armv7l-cpython-39/string_view.o, build/temp.linux-armv7l-cpython-39/copy.inl, build/temp.linux-armv7l-cpython-39/define_introspection.inl, build/temp.linux-armv7l-cpython-39/define_introspection_and_hwcaps.inl, build/temp.linux-armv7l-cpython-39/equals.inl, build/temp.linux-armv7l-cpython-39/impl_x86__base_implementation.inl, build/temp.linux-armv7l-cpython-39/hwcaps.o
2022-10-16T00:29:23,560   arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libcpu_features.a build/temp.linux-armv7l-cpython-39/impl_arm_linux_or_android.o build/temp.linux-armv7l-cpython-39/filesystem.o build/temp.linux-armv7l-cpython-39/stack_line_reader.o build/temp.linux-armv7l-cpython-39/string_view.o build/temp.linux-armv7l-cpython-39/copy.inl build/temp.linux-armv7l-cpython-39/define_introspection.inl build/temp.linux-armv7l-cpython-39/define_introspection_and_hwcaps.inl build/temp.linux-armv7l-cpython-39/equals.inl build/temp.linux-armv7l-cpython-39/impl_x86__base_implementation.inl build/temp.linux-armv7l-cpython-39/hwcaps.o
2022-10-16T00:29:23,637   generating build/temp.linux-armv7l-cpython-39/libtrimal.a from vendor/trimal/source/Cleaner.cpp, vendor/trimal/source/Alignment/Alignment.cpp, vendor/trimal/source/Alignment/sequencesMatrix.cpp, vendor/trimal/source/Statistics/similarityMatrix.cpp, vendor/trimal/source/Statistics/Mold.cpp, vendor/trimal/source/Statistics/Gaps.cpp, vendor/trimal/source/Statistics/Manager.cpp, vendor/trimal/source/Statistics/Similarity.cpp, vendor/trimal/source/Statistics/Consistency.cpp, vendor/trimal/source/reportMessages/errorMessages.cpp, vendor/trimal/source/reportMessages/infoMessages.cpp, vendor/trimal/source/reportMessages/warningMessages.cpp, vendor/trimal/source/FormatHandling/phylip_paml_state.cpp, vendor/trimal/source/FormatHandling/mega_interleaved_state.cpp, vendor/trimal/source/FormatHandling/phylip40_state.cpp, vendor/trimal/source/FormatHandling/clustal_state.cpp, vendor/trimal/source/FormatHandling/phylip32_m10_state.cpp, vendor/trimal/source/FormatHandling/phylip_paml_m10_state.cpp, vendor/trimal/source/FormatHandling/mega_sequential_state.cpp, vendor/trimal/source/FormatHandling/nexus_state.cpp, vendor/trimal/source/FormatHandling/htmlreport_state.cpp, vendor/trimal/source/FormatHandling/fasta_state.cpp, vendor/trimal/source/FormatHandling/pir_state.cpp, vendor/trimal/source/FormatHandling/phylip32_state.cpp, vendor/trimal/source/FormatHandling/fasta_m10_state.cpp, vendor/trimal/source/FormatHandling/phylip40_m10_state.cpp, vendor/trimal/source/FormatHandling/nexus_m10_state.cpp, vendor/trimal/source/FormatHandling/BaseFormatHandler.cpp, vendor/trimal/source/utils.cpp, vendor/trimal/source/InternalBenchmarker.cpp, vendor/trimal/source/trimalManager.cpp, vendor/trimal/source/VCFHandler.cpp
2022-10-16T00:29:23,638   building trimal with unix compiler
2022-10-16T00:29:23,641   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_getauxval.c -o build/temp.linux-armv7l-cpython-39/have_getauxval.o
2022-10-16T00:29:23,879   arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_getauxval.o -o build/temp.linux-armv7l-cpython-39/have_getauxval
2022-10-16T00:29:24,109   checking whether function 'getauxval' is available... yes
2022-10-16T00:29:24,114   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_dlclose.c -o build/temp.linux-armv7l-cpython-39/have_dlclose.o
2022-10-16T00:29:24,231   build/temp.linux-armv7l-cpython-39/have_dlclose.c: In function ‘main’:
2022-10-16T00:29:24,232   build/temp.linux-armv7l-cpython-39/have_dlclose.c:4:21: warning: null argument where non-null required (argument 1) [-Wnonnull]
2022-10-16T00:29:24,233       4 |                     dlclose(0);
2022-10-16T00:29:24,233         |                     ^~~~~~~
2022-10-16T00:29:24,320   arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_dlclose.o -o build/temp.linux-armv7l-cpython-39/have_dlclose
2022-10-16T00:29:24,532   /usr/bin/ld: build/temp.linux-armv7l-cpython-39/have_dlclose.o: in function `main':
2022-10-16T00:29:24,533   /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/build/temp.linux-armv7l-cpython-39/have_dlclose.c:4: undefined reference to `dlclose'
2022-10-16T00:29:24,543   collect2: error: ld returned 1 exit status
2022-10-16T00:29:24,548   checking whether function 'dlclose' is available... no
2022-10-16T00:29:24,551   generating build/temp.linux-armv7l-cpython-39/trimalManager.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/trimalManager.h
2022-10-16T00:29:24,553   patching vendor/trimal/include/trimalManager.h with patches/trimalManager.h.patch
2022-10-16T00:29:24,559   generating build/temp.linux-armv7l-cpython-39/Cleaner.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Cleaner.h
2022-10-16T00:29:24,560   patching vendor/trimal/include/Cleaner.h with patches/Cleaner.h.patch
2022-10-16T00:29:24,567   generating build/temp.linux-armv7l-cpython-39/reportsystem.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/reportsystem.h
2022-10-16T00:29:24,568   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/reportsystem.h -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,573   generating build/temp.linux-armv7l-cpython-39/VCFHandler.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/VCFHandler.h
2022-10-16T00:29:24,574   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/VCFHandler.h -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,579   generating build/temp.linux-armv7l-cpython-39/InternalBenchmarker.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/InternalBenchmarker.h
2022-10-16T00:29:24,580   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/InternalBenchmarker.h -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,584   generating build/temp.linux-armv7l-cpython-39/utils.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/utils.h
2022-10-16T00:29:24,585   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/utils.h -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,591   generating build/temp.linux-armv7l-cpython-39/values.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/values.h
2022-10-16T00:29:24,592   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/values.h -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,596   generating build/temp.linux-armv7l-cpython-39/defines.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/defines.h
2022-10-16T00:29:24,597   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/defines.h -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,601   creating build/temp.linux-armv7l-cpython-39/Statistics
2022-10-16T00:29:24,602   generating build/temp.linux-armv7l-cpython-39/Statistics/Consistency.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Statistics/Consistency.h
2022-10-16T00:29:24,603   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Statistics/Consistency.h -> build/temp.linux-armv7l-cpython-39/Statistics
2022-10-16T00:29:24,608   generating build/temp.linux-armv7l-cpython-39/Statistics/Gaps.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Statistics/Gaps.h
2022-10-16T00:29:24,609   patching vendor/trimal/include/Statistics/Gaps.h with patches/Gaps.h.patch
2022-10-16T00:29:24,613   generating build/temp.linux-armv7l-cpython-39/Statistics/Mold.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Statistics/Mold.h
2022-10-16T00:29:24,614   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Statistics/Mold.h -> build/temp.linux-armv7l-cpython-39/Statistics
2022-10-16T00:29:24,618   generating build/temp.linux-armv7l-cpython-39/Statistics/Similarity.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Statistics/Similarity.h
2022-10-16T00:29:24,619   patching vendor/trimal/include/Statistics/Similarity.h with patches/Similarity.h.patch
2022-10-16T00:29:24,625   generating build/temp.linux-armv7l-cpython-39/Statistics/Manager.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Statistics/Manager.h
2022-10-16T00:29:24,626   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Statistics/Manager.h -> build/temp.linux-armv7l-cpython-39/Statistics
2022-10-16T00:29:24,630   generating build/temp.linux-armv7l-cpython-39/Statistics/similarityMatrix.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Statistics/similarityMatrix.h
2022-10-16T00:29:24,632   patching vendor/trimal/include/Statistics/similarityMatrix.h with patches/similarityMatrix.h.patch
2022-10-16T00:29:24,637   creating build/temp.linux-armv7l-cpython-39/RawText
2022-10-16T00:29:24,638   generating build/temp.linux-armv7l-cpython-39/RawText/legacyMenu.txt from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/RawText/legacyMenu.txt
2022-10-16T00:29:24,639   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/RawText/legacyMenu.txt -> build/temp.linux-armv7l-cpython-39/RawText
2022-10-16T00:29:24,644   generating build/temp.linux-armv7l-cpython-39/RawText/menu.txt from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/RawText/menu.txt
2022-10-16T00:29:24,645   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/RawText/menu.txt -> build/temp.linux-armv7l-cpython-39/RawText
2022-10-16T00:29:24,650   generating build/temp.linux-armv7l-cpython-39/RawText/examples.txt from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/RawText/examples.txt
2022-10-16T00:29:24,651   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/RawText/examples.txt -> build/temp.linux-armv7l-cpython-39/RawText
2022-10-16T00:29:24,655   creating build/temp.linux-armv7l-cpython-39/FormatHandling
2022-10-16T00:29:24,656   generating build/temp.linux-armv7l-cpython-39/FormatHandling/htmlreport_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/htmlreport_state.h
2022-10-16T00:29:24,657   patching vendor/trimal/include/FormatHandling/htmlreport_state.h with patches/htmlreport_state.h.patch
2022-10-16T00:29:24,662   generating build/temp.linux-armv7l-cpython-39/FormatHandling/clustal_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/clustal_state.h
2022-10-16T00:29:24,663   patching vendor/trimal/include/FormatHandling/clustal_state.h with patches/clustal_state.h.patch
2022-10-16T00:29:24,668   generating build/temp.linux-armv7l-cpython-39/FormatHandling/pir_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/pir_state.h
2022-10-16T00:29:24,669   patching vendor/trimal/include/FormatHandling/pir_state.h with patches/pir_state.h.patch
2022-10-16T00:29:24,673   generating build/temp.linux-armv7l-cpython-39/FormatHandling/fasta_m10_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/fasta_m10_state.h
2022-10-16T00:29:24,675   patching vendor/trimal/include/FormatHandling/fasta_m10_state.h with patches/fasta_m10_state.h.patch
2022-10-16T00:29:24,679   generating build/temp.linux-armv7l-cpython-39/FormatHandling/FormatManager.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/FormatManager.h
2022-10-16T00:29:24,680   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/FormatManager.h -> build/temp.linux-armv7l-cpython-39/FormatHandling
2022-10-16T00:29:24,684   generating build/temp.linux-armv7l-cpython-39/FormatHandling/fasta_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/fasta_state.h
2022-10-16T00:29:24,685   patching vendor/trimal/include/FormatHandling/fasta_state.h with patches/fasta_state.h.patch
2022-10-16T00:29:24,689   generating build/temp.linux-armv7l-cpython-39/FormatHandling/formats_header.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/formats_header.h
2022-10-16T00:29:24,691   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/formats_header.h -> build/temp.linux-armv7l-cpython-39/FormatHandling
2022-10-16T00:29:24,694   generating build/temp.linux-armv7l-cpython-39/FormatHandling/nexus_m10_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/nexus_m10_state.h
2022-10-16T00:29:24,695   patching vendor/trimal/include/FormatHandling/nexus_m10_state.h with patches/nexus_m10_state.h.patch
2022-10-16T00:29:24,699   generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip40_m10_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/phylip40_m10_state.h
2022-10-16T00:29:24,700   patching vendor/trimal/include/FormatHandling/phylip40_m10_state.h with patches/phylip40_m10_state.h.patch
2022-10-16T00:29:24,705   generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip_paml_m10_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/phylip_paml_m10_state.h
2022-10-16T00:29:24,706   patching vendor/trimal/include/FormatHandling/phylip_paml_m10_state.h with patches/phylip_paml_m10_state.h.patch
2022-10-16T00:29:24,710   generating build/temp.linux-armv7l-cpython-39/FormatHandling/BaseFormatHandler.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/BaseFormatHandler.h
2022-10-16T00:29:24,712   patching vendor/trimal/include/FormatHandling/BaseFormatHandler.h with patches/BaseFormatHandler.h.patch
2022-10-16T00:29:24,717   generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip32_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/phylip32_state.h
2022-10-16T00:29:24,718   patching vendor/trimal/include/FormatHandling/phylip32_state.h with patches/phylip32_state.h.patch
2022-10-16T00:29:24,722   generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip40_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/phylip40_state.h
2022-10-16T00:29:24,723   patching vendor/trimal/include/FormatHandling/phylip40_state.h with patches/phylip40_state.h.patch
2022-10-16T00:29:24,728   generating build/temp.linux-armv7l-cpython-39/FormatHandling/mega_interleaved_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/mega_interleaved_state.h
2022-10-16T00:29:24,729   patching vendor/trimal/include/FormatHandling/mega_interleaved_state.h with patches/mega_interleaved_state.h.patch
2022-10-16T00:29:24,733   generating build/temp.linux-armv7l-cpython-39/FormatHandling/nexus_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/nexus_state.h
2022-10-16T00:29:24,734   patching vendor/trimal/include/FormatHandling/nexus_state.h with patches/nexus_state.h.patch
2022-10-16T00:29:24,738   generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip32_m10_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/phylip32_m10_state.h
2022-10-16T00:29:24,739   patching vendor/trimal/include/FormatHandling/phylip32_m10_state.h with patches/phylip32_m10_state.h.patch
2022-10-16T00:29:24,743   generating build/temp.linux-armv7l-cpython-39/FormatHandling/mega_sequential_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/mega_sequential_state.h
2022-10-16T00:29:24,744   patching vendor/trimal/include/FormatHandling/mega_sequential_state.h with patches/mega_sequential_state.h.patch
2022-10-16T00:29:24,748   generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip_paml_state.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/FormatHandling/phylip_paml_state.h
2022-10-16T00:29:24,749   patching vendor/trimal/include/FormatHandling/phylip_paml_state.h with patches/phylip_paml_state.h.patch
2022-10-16T00:29:24,753   creating build/temp.linux-armv7l-cpython-39/Alignment
2022-10-16T00:29:24,755   generating build/temp.linux-armv7l-cpython-39/Alignment/Alignment.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Alignment/Alignment.h
2022-10-16T00:29:24,756   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Alignment/Alignment.h -> build/temp.linux-armv7l-cpython-39/Alignment
2022-10-16T00:29:24,760   generating build/temp.linux-armv7l-cpython-39/Alignment/sequencesMatrix.h from /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Alignment/sequencesMatrix.h
2022-10-16T00:29:24,761   copying /tmp/pip-wheel-_y3w75vl/pytrimal_3a0b19252b734e729e0d71b2e1ef49fb/vendor/trimal/include/Alignment/sequencesMatrix.h -> build/temp.linux-armv7l-cpython-39/Alignment
2022-10-16T00:29:24,765   generating build/temp.linux-armv7l-cpython-39/Cleaner.cpp from vendor/trimal/source/Cleaner.cpp
2022-10-16T00:29:24,767   patching vendor/trimal/source/Cleaner.cpp with patches/Cleaner.cpp.patch
2022-10-16T00:29:24,777   generating build/temp.linux-armv7l-cpython-39/Alignment.cpp from vendor/trimal/source/Alignment/Alignment.cpp
2022-10-16T00:29:24,778   copying vendor/trimal/source/Alignment/Alignment.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,787   generating build/temp.linux-armv7l-cpython-39/sequencesMatrix.cpp from vendor/trimal/source/Alignment/sequencesMatrix.cpp
2022-10-16T00:29:24,789   copying vendor/trimal/source/Alignment/sequencesMatrix.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,792   generating build/temp.linux-armv7l-cpython-39/similarityMatrix.cpp from vendor/trimal/source/Statistics/similarityMatrix.cpp
2022-10-16T00:29:24,794   copying vendor/trimal/source/Statistics/similarityMatrix.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,798   generating build/temp.linux-armv7l-cpython-39/Mold.cpp from vendor/trimal/source/Statistics/Mold.cpp
2022-10-16T00:29:24,800   copying vendor/trimal/source/Statistics/Mold.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,804   generating build/temp.linux-armv7l-cpython-39/Gaps.cpp from vendor/trimal/source/Statistics/Gaps.cpp
2022-10-16T00:29:24,805   copying vendor/trimal/source/Statistics/Gaps.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,810   generating build/temp.linux-armv7l-cpython-39/Manager.cpp from vendor/trimal/source/Statistics/Manager.cpp
2022-10-16T00:29:24,812   copying vendor/trimal/source/Statistics/Manager.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,816   generating build/temp.linux-armv7l-cpython-39/Similarity.cpp from vendor/trimal/source/Statistics/Similarity.cpp
2022-10-16T00:29:24,817   copying vendor/trimal/source/Statistics/Similarity.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,822   generating build/temp.linux-armv7l-cpython-39/Consistency.cpp from vendor/trimal/source/Statistics/Consistency.cpp
2022-10-16T00:29:24,824   copying vendor/trimal/source/Statistics/Consistency.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,830   generating build/temp.linux-armv7l-cpython-39/errorMessages.cpp from vendor/trimal/source/reportMessages/errorMessages.cpp
2022-10-16T00:29:24,831   copying vendor/trimal/source/reportMessages/errorMessages.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,836   generating build/temp.linux-armv7l-cpython-39/infoMessages.cpp from vendor/trimal/source/reportMessages/infoMessages.cpp
2022-10-16T00:29:24,837   copying vendor/trimal/source/reportMessages/infoMessages.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,840   generating build/temp.linux-armv7l-cpython-39/warningMessages.cpp from vendor/trimal/source/reportMessages/warningMessages.cpp
2022-10-16T00:29:24,842   copying vendor/trimal/source/reportMessages/warningMessages.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,845   generating build/temp.linux-armv7l-cpython-39/phylip_paml_state.cpp from vendor/trimal/source/FormatHandling/phylip_paml_state.cpp
2022-10-16T00:29:24,846   patching vendor/trimal/source/FormatHandling/phylip_paml_state.cpp with patches/phylip_paml_state.cpp.patch
2022-10-16T00:29:24,850   generating build/temp.linux-armv7l-cpython-39/mega_interleaved_state.cpp from vendor/trimal/source/FormatHandling/mega_interleaved_state.cpp
2022-10-16T00:29:24,851   patching vendor/trimal/source/FormatHandling/mega_interleaved_state.cpp with patches/mega_interleaved_state.cpp.patch
2022-10-16T00:29:24,856   generating build/temp.linux-armv7l-cpython-39/phylip40_state.cpp from vendor/trimal/source/FormatHandling/phylip40_state.cpp
2022-10-16T00:29:24,857   patching vendor/trimal/source/FormatHandling/phylip40_state.cpp with patches/phylip40_state.cpp.patch
2022-10-16T00:29:24,863   generating build/temp.linux-armv7l-cpython-39/clustal_state.cpp from vendor/trimal/source/FormatHandling/clustal_state.cpp
2022-10-16T00:29:24,864   patching vendor/trimal/source/FormatHandling/clustal_state.cpp with patches/clustal_state.cpp.patch
2022-10-16T00:29:24,869   generating build/temp.linux-armv7l-cpython-39/phylip32_m10_state.cpp from vendor/trimal/source/FormatHandling/phylip32_m10_state.cpp
2022-10-16T00:29:24,870   patching vendor/trimal/source/FormatHandling/phylip32_m10_state.cpp with patches/phylip32_m10_state.cpp.patch
2022-10-16T00:29:24,875   generating build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.cpp from vendor/trimal/source/FormatHandling/phylip_paml_m10_state.cpp
2022-10-16T00:29:24,876   patching vendor/trimal/source/FormatHandling/phylip_paml_m10_state.cpp with patches/phylip_paml_m10_state.cpp.patch
2022-10-16T00:29:24,880   generating build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp from vendor/trimal/source/FormatHandling/mega_sequential_state.cpp
2022-10-16T00:29:24,881   patching vendor/trimal/source/FormatHandling/mega_sequential_state.cpp with patches/mega_sequential_state.cpp.patch
2022-10-16T00:29:24,886   generating build/temp.linux-armv7l-cpython-39/nexus_state.cpp from vendor/trimal/source/FormatHandling/nexus_state.cpp
2022-10-16T00:29:24,887   patching vendor/trimal/source/FormatHandling/nexus_state.cpp with patches/nexus_state.cpp.patch
2022-10-16T00:29:24,892   generating build/temp.linux-armv7l-cpython-39/htmlreport_state.cpp from vendor/trimal/source/FormatHandling/htmlreport_state.cpp
2022-10-16T00:29:24,894   patching vendor/trimal/source/FormatHandling/htmlreport_state.cpp with patches/htmlreport_state.cpp.patch
2022-10-16T00:29:24,898   generating build/temp.linux-armv7l-cpython-39/fasta_state.cpp from vendor/trimal/source/FormatHandling/fasta_state.cpp
2022-10-16T00:29:24,899   patching vendor/trimal/source/FormatHandling/fasta_state.cpp with patches/fasta_state.cpp.patch
2022-10-16T00:29:24,904   generating build/temp.linux-armv7l-cpython-39/pir_state.cpp from vendor/trimal/source/FormatHandling/pir_state.cpp
2022-10-16T00:29:24,906   patching vendor/trimal/source/FormatHandling/pir_state.cpp with patches/pir_state.cpp.patch
2022-10-16T00:29:24,911   generating build/temp.linux-armv7l-cpython-39/phylip32_state.cpp from vendor/trimal/source/FormatHandling/phylip32_state.cpp
2022-10-16T00:29:24,912   patching vendor/trimal/source/FormatHandling/phylip32_state.cpp with patches/phylip32_state.cpp.patch
2022-10-16T00:29:24,917   generating build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp from vendor/trimal/source/FormatHandling/fasta_m10_state.cpp
2022-10-16T00:29:24,918   patching vendor/trimal/source/FormatHandling/fasta_m10_state.cpp with patches/fasta_m10_state.cpp.patch
2022-10-16T00:29:24,923   generating build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp from vendor/trimal/source/FormatHandling/phylip40_m10_state.cpp
2022-10-16T00:29:24,924   patching vendor/trimal/source/FormatHandling/phylip40_m10_state.cpp with patches/phylip40_m10_state.cpp.patch
2022-10-16T00:29:24,928   generating build/temp.linux-armv7l-cpython-39/nexus_m10_state.cpp from vendor/trimal/source/FormatHandling/nexus_m10_state.cpp
2022-10-16T00:29:24,929   patching vendor/trimal/source/FormatHandling/nexus_m10_state.cpp with patches/nexus_m10_state.cpp.patch
2022-10-16T00:29:24,934   generating build/temp.linux-armv7l-cpython-39/BaseFormatHandler.cpp from vendor/trimal/source/FormatHandling/BaseFormatHandler.cpp
2022-10-16T00:29:24,935   copying vendor/trimal/source/FormatHandling/BaseFormatHandler.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,939   generating build/temp.linux-armv7l-cpython-39/utils.cpp from vendor/trimal/source/utils.cpp
2022-10-16T00:29:24,940   copying vendor/trimal/source/utils.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,946   generating build/temp.linux-armv7l-cpython-39/InternalBenchmarker.cpp from vendor/trimal/source/InternalBenchmarker.cpp
2022-10-16T00:29:24,947   copying vendor/trimal/source/InternalBenchmarker.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,951   generating build/temp.linux-armv7l-cpython-39/trimalManager.cpp from vendor/trimal/source/trimalManager.cpp
2022-10-16T00:29:24,952   copying vendor/trimal/source/trimalManager.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,962   generating build/temp.linux-armv7l-cpython-39/VCFHandler.cpp from vendor/trimal/source/VCFHandler.cpp
2022-10-16T00:29:24,963   copying vendor/trimal/source/VCFHandler.cpp -> build/temp.linux-armv7l-cpython-39
2022-10-16T00:29:24,978   generating build/temp.linux-armv7l-cpython-39/Cleaner.o from build/temp.linux-armv7l-cpython-39/Cleaner.cpp
2022-10-16T00:29:24,979   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Cleaner.cpp -o build/temp.linux-armv7l-cpython-39/Cleaner.o
2022-10-16T00:29:24,980   generating build/temp.linux-armv7l-cpython-39/Mold.o from build/temp.linux-armv7l-cpython-39/Mold.cpp
2022-10-16T00:29:24,980   generating build/temp.linux-armv7l-cpython-39/Manager.o from build/temp.linux-armv7l-cpython-39/Manager.cpp
2022-10-16T00:29:24,981   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Manager.cpp -o build/temp.linux-armv7l-cpython-39/Manager.o
2022-10-16T00:29:24,982   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Mold.cpp -o build/temp.linux-armv7l-cpython-39/Mold.o
2022-10-16T00:29:24,983   generating build/temp.linux-armv7l-cpython-39/sequencesMatrix.o from build/temp.linux-armv7l-cpython-39/sequencesMatrix.cpp
2022-10-16T00:29:24,984   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/sequencesMatrix.cpp -o build/temp.linux-armv7l-cpython-39/sequencesMatrix.o
2022-10-16T00:29:26,138   build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1449: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2022-10-16T00:29:26,139    1449 |     #pragma omp parallel for num_threads(NUMTHREADS) if(alig->originalNumberOfSequences>MINPARALLELSIZE)
2022-10-16T00:29:26,140         |
2022-10-16T00:29:26,141   build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1457: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2022-10-16T00:29:26,141    1457 |     #pragma omp parallel for num_threads(NUMTHREADS) private(j, k, hit, dst) if(alig->originalNumberOfSequences>MINPARALLELSIZE)
2022-10-16T00:29:26,142         |
2022-10-16T00:29:30,382   build/temp.linux-armv7l-cpython-39/Cleaner.cpp: In member function ‘Alignment* Cleaner::cleanStrict(int, const int*, float, const float*, bool, bool)’:
2022-10-16T00:29:30,382   build/temp.linux-armv7l-cpython-39/Cleaner.cpp:519:12: warning: unused variable ‘x’ [-Wunused-variable]
2022-10-16T00:29:30,383     519 |     int i, x, pos, counter, lenBlock;
2022-10-16T00:29:30,383         |            ^
2022-10-16T00:29:30,431   build/temp.linux-armv7l-cpython-39/Cleaner.cpp: In member function ‘Alignment* Cleaner::getClustering(float)’:
2022-10-16T00:29:30,431   build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1217:12: warning: unused variable ‘j’ [-Wunused-variable]
2022-10-16T00:29:30,432    1217 |     int i, j, *clustering;
2022-10-16T00:29:30,432         |            ^
2022-10-16T00:29:30,448   build/temp.linux-armv7l-cpython-39/Cleaner.cpp: In member function ‘void Cleaner::removeAllGapsSeqsAndCols(bool, bool)’:
2022-10-16T00:29:30,448   build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1382:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:29:30,449    1382 |             for (j = 0; j < alig->sequences[i].length(); j++) {
2022-10-16T00:29:30,449         |                         ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:29:30,450   build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1393:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:29:30,451    1393 |             if (j == alig->sequences[i].length()) {
2022-10-16T00:29:30,451         |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:29:30,813   generating build/temp.linux-armv7l-cpython-39/Similarity.o from build/temp.linux-armv7l-cpython-39/Similarity.cpp
2022-10-16T00:29:30,815   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Similarity.cpp -o build/temp.linux-armv7l-cpython-39/Similarity.o
2022-10-16T00:29:31,128   generating build/temp.linux-armv7l-cpython-39/similarityMatrix.o from build/temp.linux-armv7l-cpython-39/similarityMatrix.cpp
2022-10-16T00:29:31,130   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/similarityMatrix.cpp -o build/temp.linux-armv7l-cpython-39/similarityMatrix.o
2022-10-16T00:29:31,789   build/temp.linux-armv7l-cpython-39/Similarity.cpp:115: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2022-10-16T00:29:31,789     115 |         #pragma omp parallel for num_threads(NUMTHREADS) if(alig->originalNumberOfSequences>MINPARALLELSIZE)
2022-10-16T00:29:31,790         |
2022-10-16T00:29:31,791   build/temp.linux-armv7l-cpython-39/Similarity.cpp:124: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2022-10-16T00:29:31,791     124 |         #pragma omp parallel for num_threads(NUMTHREADS) private(j, k, sum, length) if(alig->originalNumberOfSequences>MINPARALLELSIZE)
2022-10-16T00:29:31,792         |
2022-10-16T00:29:34,972   generating build/temp.linux-armv7l-cpython-39/Gaps.o from build/temp.linux-armv7l-cpython-39/Gaps.cpp
2022-10-16T00:29:34,974   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Gaps.cpp -o build/temp.linux-armv7l-cpython-39/Gaps.o
2022-10-16T00:29:37,922   generating build/temp.linux-armv7l-cpython-39/Consistency.o from build/temp.linux-armv7l-cpython-39/Consistency.cpp
2022-10-16T00:29:37,924   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Consistency.cpp -o build/temp.linux-armv7l-cpython-39/Consistency.o
2022-10-16T00:29:41,804   generating build/temp.linux-armv7l-cpython-39/Alignment.o from build/temp.linux-armv7l-cpython-39/Alignment.cpp
2022-10-16T00:29:41,805   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Alignment.cpp -o build/temp.linux-armv7l-cpython-39/Alignment.o
2022-10-16T00:29:42,419   generating build/temp.linux-armv7l-cpython-39/infoMessages.o from build/temp.linux-armv7l-cpython-39/infoMessages.cpp
2022-10-16T00:29:42,421   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/infoMessages.cpp -o build/temp.linux-armv7l-cpython-39/infoMessages.o
2022-10-16T00:29:42,885   build/temp.linux-armv7l-cpython-39/Alignment.cpp:395: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2022-10-16T00:29:42,886     395 |     #pragma omp parallel for num_threads(NUMTHREADS) if(numberOfSequences>MINPARALLELSIZE)
2022-10-16T00:29:42,886         |
2022-10-16T00:29:42,886   build/temp.linux-armv7l-cpython-39/Alignment.cpp:398: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2022-10-16T00:29:42,887     398 |     #pragma omp parallel for num_threads(NUMTHREADS) collapse(2) private(k, shared, referenceLength) if(numberOfSequences>MINPARALLELSIZE)
2022-10-16T00:29:42,887         |
2022-10-16T00:29:42,888   build/temp.linux-armv7l-cpython-39/Alignment.cpp:930: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2022-10-16T00:29:42,888     930 |     #pragma omp parallel for private(k, mx, avg, pos) reduction(+: avgSeq, maxAvgSeq) num_threads(NUMTHREADS) if(originalNumberOfSequences>MINPARALLELSIZE)
2022-10-16T00:29:42,889         |
2022-10-16T00:29:46,140   generating build/temp.linux-armv7l-cpython-39/phylip_paml_state.o from build/temp.linux-armv7l-cpython-39/phylip_paml_state.cpp
2022-10-16T00:29:46,141   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip_paml_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip_paml_state.o
2022-10-16T00:29:47,201   build/temp.linux-armv7l-cpython-39/Alignment.cpp: In member function ‘Alignment* Alignment::getTranslationCDS(Alignment*)’:
2022-10-16T00:29:47,202   build/temp.linux-armv7l-cpython-39/Alignment.cpp:204:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:29:47,203     204 |         for (y = 0, counter = 0; y < ProtAlig->sequences[x].size(); y++) {
2022-10-16T00:29:47,203         |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:29:47,239   build/temp.linux-armv7l-cpython-39/Alignment.cpp: In member function ‘bool Alignment::prepareCodingSequence(bool, bool, Alignment*)’:
2022-10-16T00:29:47,239   build/temp.linux-armv7l-cpython-39/Alignment.cpp:614:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare]
2022-10-16T00:29:47,240     614 |             if ((found != string::npos) && (((int) found % 3) == 0)) {
2022-10-16T00:29:47,240         |                  ~~~~~~^~~~~~~~~~~~~~~
2022-10-16T00:29:47,248   build/temp.linux-armv7l-cpython-39/Alignment.cpp:641:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare]
2022-10-16T00:29:47,248     641 |         } while (found != string::npos);
2022-10-16T00:29:47,249         |                  ~~~~~~^~~~~~~~~~~~~~~
2022-10-16T00:29:47,250   build/temp.linux-armv7l-cpython-39/Alignment.cpp:651:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare]
2022-10-16T00:29:47,250     651 |             if ((found != string::npos) && (((int) found % 3) == 0)) {
2022-10-16T00:29:47,251         |                  ~~~~~~^~~~~~~~~~~~~~~
2022-10-16T00:29:47,258   build/temp.linux-armv7l-cpython-39/Alignment.cpp:676:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare]
2022-10-16T00:29:47,259     676 |         } while (found != string::npos);
2022-10-16T00:29:47,260         |                  ~~~~~~^~~~~~~~~~~~~~~
2022-10-16T00:29:47,260   build/temp.linux-armv7l-cpython-39/Alignment.cpp:685:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare]
2022-10-16T00:29:47,261     685 |             if ((found != string::npos) && (((int) found % 3) == 0)) {
2022-10-16T00:29:47,261         |                  ~~~~~~^~~~~~~~~~~~~~~
2022-10-16T00:29:47,268   build/temp.linux-armv7l-cpython-39/Alignment.cpp:711:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare]
2022-10-16T00:29:47,269     711 |         } while (found != string::npos);
2022-10-16T00:29:47,270         |                  ~~~~~~^~~~~~~~~~~~~~~
2022-10-16T00:29:47,295   build/temp.linux-armv7l-cpython-39/Alignment.cpp: In member function ‘bool Alignment::fillMatrices(bool, bool)’:
2022-10-16T00:29:47,295   build/temp.linux-armv7l-cpython-39/Alignment.cpp:810:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:29:47,296     810 |             for (j = 0; j < sequences[i].length(); j++)
2022-10-16T00:29:47,296         |                         ~~^~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:29:47,301   build/temp.linux-armv7l-cpython-39/Alignment.cpp:837:35: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-16T00:29:47,301     837 |         if (sequences[i].length() != numberOfResidues) {
2022-10-16T00:29:47,302         |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2022-10-16T00:29:47,308   build/temp.linux-armv7l-cpython-39/Alignment.cpp: In member function ‘void Alignment::printAlignmentInfo(std::ostream&)’:
2022-10-16T00:29:47,310   build/temp.linux-armv7l-cpython-39/Alignment.cpp:889:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:29:47,310     889 |         for (j = 0, valid_res = 0; j < sequences[i].length(); j++)
2022-10-16T00:29:47,311         |                                    ~~^~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:29:47,643   generating build/temp.linux-armv7l-cpython-39/warningMessages.o from build/temp.linux-armv7l-cpython-39/warningMessages.cpp
2022-10-16T00:29:47,645   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/warningMessages.cpp -o build/temp.linux-armv7l-cpython-39/warningMessages.o
2022-10-16T00:29:52,918   generating build/temp.linux-armv7l-cpython-39/mega_interleaved_state.o from build/temp.linux-armv7l-cpython-39/mega_interleaved_state.cpp
2022-10-16T00:29:52,920   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/mega_interleaved_state.cpp -o build/temp.linux-armv7l-cpython-39/mega_interleaved_state.o
2022-10-16T00:29:53,033   generating build/temp.linux-armv7l-cpython-39/phylip40_state.o from build/temp.linux-armv7l-cpython-39/phylip40_state.cpp
2022-10-16T00:29:53,035   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip40_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip40_state.o
2022-10-16T00:29:53,760   generating build/temp.linux-armv7l-cpython-39/errorMessages.o from build/temp.linux-armv7l-cpython-39/errorMessages.cpp
2022-10-16T00:29:53,762   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/errorMessages.cpp -o build/temp.linux-armv7l-cpython-39/errorMessages.o
2022-10-16T00:29:59,921   generating build/temp.linux-armv7l-cpython-39/phylip32_m10_state.o from build/temp.linux-armv7l-cpython-39/phylip32_m10_state.cpp
2022-10-16T00:29:59,923   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip32_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip32_m10_state.o
2022-10-16T00:30:00,050   generating build/temp.linux-armv7l-cpython-39/mega_sequential_state.o from build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp
2022-10-16T00:30:00,051   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp -o build/temp.linux-armv7l-cpython-39/mega_sequential_state.o
2022-10-16T00:30:00,939   generating build/temp.linux-armv7l-cpython-39/clustal_state.o from build/temp.linux-armv7l-cpython-39/clustal_state.cpp
2022-10-16T00:30:00,941   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/clustal_state.cpp -o build/temp.linux-armv7l-cpython-39/clustal_state.o
2022-10-16T00:30:04,926   build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp: In member function ‘virtual bool FormatHandling::mega_sequential_state::SaveAlignment(const Alignment&, std::ostream*)’:
2022-10-16T00:30:04,927   build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp:339:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:04,927     339 |             for(j = 0, l = 0; j < alignment.sequences[i].length(); j ++)
2022-10-16T00:30:04,928         |                               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:04,936   build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp:293:15: warning: unused variable ‘k’ [-Wunused-variable]
2022-10-16T00:30:04,937     293 |     int i, j, k, l, m;
2022-10-16T00:30:04,938         |               ^
2022-10-16T00:30:04,938   build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp:293:21: warning: unused variable ‘m’ [-Wunused-variable]
2022-10-16T00:30:04,939     293 |     int i, j, k, l, m;
2022-10-16T00:30:04,939         |                     ^
2022-10-16T00:30:06,928   generating build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.o from build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.cpp
2022-10-16T00:30:06,930   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.o
2022-10-16T00:30:08,043   generating build/temp.linux-armv7l-cpython-39/nexus_state.o from build/temp.linux-armv7l-cpython-39/nexus_state.cpp
2022-10-16T00:30:08,045   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/nexus_state.cpp -o build/temp.linux-armv7l-cpython-39/nexus_state.o
2022-10-16T00:30:08,612   generating build/temp.linux-armv7l-cpython-39/htmlreport_state.o from build/temp.linux-armv7l-cpython-39/htmlreport_state.cpp
2022-10-16T00:30:08,614   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/htmlreport_state.cpp -o build/temp.linux-armv7l-cpython-39/htmlreport_state.o
2022-10-16T00:30:13,989   generating build/temp.linux-armv7l-cpython-39/pir_state.o from build/temp.linux-armv7l-cpython-39/pir_state.cpp
2022-10-16T00:30:13,991   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/pir_state.cpp -o build/temp.linux-armv7l-cpython-39/pir_state.o
2022-10-16T00:30:15,517   generating build/temp.linux-armv7l-cpython-39/fasta_state.o from build/temp.linux-armv7l-cpython-39/fasta_state.cpp
2022-10-16T00:30:15,519   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/fasta_state.cpp -o build/temp.linux-armv7l-cpython-39/fasta_state.o
2022-10-16T00:30:17,362   generating build/temp.linux-armv7l-cpython-39/fasta_m10_state.o from build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp
2022-10-16T00:30:17,365   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/fasta_m10_state.o
2022-10-16T00:30:19,282   build/temp.linux-armv7l-cpython-39/pir_state.cpp: In member function ‘virtual bool FormatHandling::pir_state::SaveAlignment(const Alignment&, std::ostream*)’:
2022-10-16T00:30:19,283   build/temp.linux-armv7l-cpython-39/pir_state.cpp:227:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:19,284     227 |         for (j = 0, k = 0, l = 0; j < alignment.sequences[i].length(); j++) {
2022-10-16T00:30:19,284         |                                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:19,287   build/temp.linux-armv7l-cpython-39/pir_state.cpp:235:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:19,287     235 |                 if (j == alignment.sequences[i].length() - 1);
2022-10-16T00:30:19,288         |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:19,292   build/temp.linux-armv7l-cpython-39/pir_state.cpp:188:18: warning: variable ‘l’ set but not used [-Wunused-but-set-variable]
2022-10-16T00:30:19,293     188 |     int i, j, k, l;
2022-10-16T00:30:19,293         |                  ^
2022-10-16T00:30:20,441   build/temp.linux-armv7l-cpython-39/fasta_state.cpp: In member function ‘virtual int FormatHandling::fasta_state::CheckAlignment(std::istream*)’:
2022-10-16T00:30:20,442   build/temp.linux-armv7l-cpython-39/fasta_state.cpp:48:9: warning: case label value is less than minimum value for type [-Wswitch-outside-range]
2022-10-16T00:30:20,442      48 |         case EOF: return 1;
2022-10-16T00:30:20,443         |         ^~~~
2022-10-16T00:30:20,474   build/temp.linux-armv7l-cpython-39/fasta_state.cpp: In member function ‘virtual bool FormatHandling::fasta_state::SaveAlignment(const Alignment&, std::ostream*)’:
2022-10-16T00:30:20,475   build/temp.linux-armv7l-cpython-39/fasta_state.cpp:213:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:20,476     213 |         for (j = 0, k = 0; j < alignment.sequences[i].length(); j++)
2022-10-16T00:30:20,476         |                            ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:20,477   build/temp.linux-armv7l-cpython-39/fasta_state.cpp:217:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:20,477     217 |                 if (!lastcharIsnewline && j == alignment.sequences[i].length() -1 )
2022-10-16T00:30:20,478         |                                           ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:20,479   build/temp.linux-armv7l-cpython-39/fasta_state.cpp:228:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:20,480     228 |                 if (k % 60 == 0 || j == alignment.sequences[i].length() -1 )
2022-10-16T00:30:20,481         |                                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:20,964   generating build/temp.linux-armv7l-cpython-39/nexus_m10_state.o from build/temp.linux-armv7l-cpython-39/nexus_m10_state.cpp
2022-10-16T00:30:20,965   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/nexus_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/nexus_m10_state.o
2022-10-16T00:30:21,904   generating build/temp.linux-armv7l-cpython-39/phylip32_state.o from build/temp.linux-armv7l-cpython-39/phylip32_state.cpp
2022-10-16T00:30:21,906   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip32_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip32_state.o
2022-10-16T00:30:22,417   build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp: In member function ‘virtual bool FormatHandling::fasta_m10_state::SaveAlignment(const Alignment&, std::ostream*)’:
2022-10-16T00:30:22,417   build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp:99:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:22,418      99 |         for (j = 0, k = 0; j < alignment.sequences[i].length(); j++)
2022-10-16T00:30:22,418         |                            ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:22,419   build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp:103:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:22,420     103 |                 if (!lastcharIsnewline && j == alignment.sequences[i].length() -1 )
2022-10-16T00:30:22,420         |                                           ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:22,422   build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp:114:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:22,422     114 |                 if ((k % 60 == 0 || j == alignment.sequences[i].length() - 1))
2022-10-16T00:30:22,423         |                                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:23,179   generating build/temp.linux-armv7l-cpython-39/utils.o from build/temp.linux-armv7l-cpython-39/utils.cpp
2022-10-16T00:30:23,180   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/utils.cpp -o build/temp.linux-armv7l-cpython-39/utils.o
2022-10-16T00:30:24,484   generating build/temp.linux-armv7l-cpython-39/phylip40_m10_state.o from build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp
2022-10-16T00:30:24,486   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip40_m10_state.o
2022-10-16T00:30:27,468   build/temp.linux-armv7l-cpython-39/utils.cpp: In function ‘std::string utils::removeCharacter(char, std::string)’:
2022-10-16T00:30:27,469   build/temp.linux-armv7l-cpython-39/utils.cpp:490:20: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-16T00:30:27,470     490 |         while (pos != (int) std::string::npos) {
2022-10-16T00:30:27,470         |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:27,497   build/temp.linux-armv7l-cpython-39/utils.cpp: In function ‘int* utils::readNumbers(const string&)’:
2022-10-16T00:30:27,498   build/temp.linux-armv7l-cpython-39/utils.cpp:632:52: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-16T00:30:27,499     632 |         while ((comma = line.find(',', comma + 1)) != (int) std::string::npos)
2022-10-16T00:30:27,499         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:27,500   build/temp.linux-armv7l-cpython-39/utils.cpp:646:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-16T00:30:27,501     646 |             if (((separ < comma) || (comma == (int) std::string::npos)) && (separ != (int) std::string::npos)) {
2022-10-16T00:30:27,501         |                                      ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:27,502   build/temp.linux-armv7l-cpython-39/utils.cpp:646:83: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-16T00:30:27,503     646 |             if (((separ < comma) || (comma == (int) std::string::npos)) && (separ != (int) std::string::npos)) {
2022-10-16T00:30:27,503         |                                                                             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:27,504   build/temp.linux-armv7l-cpython-39/utils.cpp:650:50: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-16T00:30:27,504     650 |             } else if ((separ > comma) || (separ == (int) std::string::npos)) {
2022-10-16T00:30:27,505         |                                            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:27,506   build/temp.linux-armv7l-cpython-39/utils.cpp:666:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-16T00:30:27,506     666 |             if (comma == (int) std::string::npos)
2022-10-16T00:30:27,507         |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:29,501   generating build/temp.linux-armv7l-cpython-39/BaseFormatHandler.o from build/temp.linux-armv7l-cpython-39/BaseFormatHandler.cpp
2022-10-16T00:30:29,502   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/BaseFormatHandler.cpp -o build/temp.linux-armv7l-cpython-39/BaseFormatHandler.o
2022-10-16T00:30:29,929   generating build/temp.linux-armv7l-cpython-39/trimalManager.o from build/temp.linux-armv7l-cpython-39/trimalManager.cpp
2022-10-16T00:30:29,930   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/trimalManager.cpp -o build/temp.linux-armv7l-cpython-39/trimalManager.o
2022-10-16T00:30:30,547   build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp: In member function ‘virtual bool FormatHandling::phylip40_m10_state::SaveAlignment(const Alignment&, std::ostream*)’:
2022-10-16T00:30:30,548   build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp:108:19: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-16T00:30:30,548     108 |     for (i = k; i < alignment.originalNumberOfResidues; i=k)
2022-10-16T00:30:30,549         |                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:30:34,613   generating build/temp.linux-armv7l-cpython-39/InternalBenchmarker.o from build/temp.linux-armv7l-cpython-39/InternalBenchmarker.cpp
2022-10-16T00:30:34,615   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/InternalBenchmarker.cpp -o build/temp.linux-armv7l-cpython-39/InternalBenchmarker.o
2022-10-16T00:30:34,852   In file included from build/temp.linux-armv7l-cpython-39/trimalManager.cpp:42:
2022-10-16T00:30:34,852   build/temp.linux-armv7l-cpython-39/VCFHandler.h: In constructor ‘ngs::__internal::vcfFeature::vcfFeature()’:
2022-10-16T00:30:34,853   build/temp.linux-armv7l-cpython-39/VCFHandler.h:87:19: warning: ‘ngs::__internal::vcfFeature::quality’ will be initialized after [-Wreorder]
2022-10-16T00:30:34,853      87 |             float quality;
2022-10-16T00:30:34,853         |                   ^~~~~~~
2022-10-16T00:30:34,854   build/temp.linux-armv7l-cpython-39/VCFHandler.h:85:18: warning:   ‘bool ngs::__internal::vcfFeature::filter’ [-Wreorder]
2022-10-16T00:30:34,854      85 |             bool filter;
2022-10-16T00:30:34,855         |                  ^~~~~~
2022-10-16T00:30:34,855   build/temp.linux-armv7l-cpython-39/VCFHandler.h:96:13: warning:   when initialized here [-Wreorder]
2022-10-16T00:30:34,855      96 |             vcfFeature() : position(0), quality(0.0F), filter(false), readDepthIndex(0)
2022-10-16T00:30:34,856         |             ^~~~~~~~~~
2022-10-16T00:30:35,238   build/temp.linux-armv7l-cpython-39/trimalManager.cpp: In member function ‘bool trimAlManager::check_outputs_coincidence()’:
2022-10-16T00:30:35,238   build/temp.linux-armv7l-cpython-39/trimalManager.cpp:1419:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::array<char*, 4>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:35,239    1419 |     for (int i = 0, x = 0; i < outFiles.size(); i++) {
2022-10-16T00:30:35,239         |                            ~~^~~~~~~~~~~~~~~~~
2022-10-16T00:30:35,239   build/temp.linux-armv7l-cpython-39/trimalManager.cpp:1421:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::array<char*, 4>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:30:35,240    1421 |             for (x = i + 1; x < outFiles.size(); x++) {
2022-10-16T00:30:35,240         |                             ~~^~~~~~~~~~~~~~~~~
2022-10-16T00:30:57,685   generating build/temp.linux-armv7l-cpython-39/VCFHandler.o from build/temp.linux-armv7l-cpython-39/VCFHandler.cpp
2022-10-16T00:30:57,687   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -DHAVE_STRONG_GETAUXVAL=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/VCFHandler.cpp -o build/temp.linux-armv7l-cpython-39/VCFHandler.o
2022-10-16T00:31:01,278   In file included from build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:30:
2022-10-16T00:31:01,279   build/temp.linux-armv7l-cpython-39/VCFHandler.h: In constructor ‘ngs::__internal::vcfFeature::vcfFeature()’:
2022-10-16T00:31:01,279   build/temp.linux-armv7l-cpython-39/VCFHandler.h:87:19: warning: ‘ngs::__internal::vcfFeature::quality’ will be initialized after [-Wreorder]
2022-10-16T00:31:01,279      87 |             float quality;
2022-10-16T00:31:01,280         |                   ^~~~~~~
2022-10-16T00:31:01,280   build/temp.linux-armv7l-cpython-39/VCFHandler.h:85:18: warning:   ‘bool ngs::__internal::vcfFeature::filter’ [-Wreorder]
2022-10-16T00:31:01,281      85 |             bool filter;
2022-10-16T00:31:01,281         |                  ^~~~~~
2022-10-16T00:31:01,281   build/temp.linux-armv7l-cpython-39/VCFHandler.h:96:13: warning:   when initialized here [-Wreorder]
2022-10-16T00:31:01,282      96 |             vcfFeature() : position(0), quality(0.0F), filter(false), readDepthIndex(0)
2022-10-16T00:31:01,282         |             ^~~~~~~~~~
2022-10-16T00:31:01,326   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘bool ngs::__internal::checkContigsWithReference(const AlignmentVector&, const StringVector&)’:
2022-10-16T00:31:01,327   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:153:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,327     153 |                 for (i = 0; i < sources.size(); i++) {
2022-10-16T00:31:01,328         |                             ~~^~~~~~~~~~~~~~~~
2022-10-16T00:31:01,328   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:162:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,328     162 |                 if (i == sources.size()) {
2022-10-16T00:31:01,329         |                     ~~^~~~~~~~~~~~~~~~~
2022-10-16T00:31:01,342   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::increaseSequencesInAlignment(const AlignmentVector&, const StringVector&)’:
2022-10-16T00:31:01,342   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:198:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,342     198 |                 for (int i = 1; i < donors.size() + 1; i++) {
2022-10-16T00:31:01,343         |                                 ~~^~~~~~~~~~~~~~~~~~~
2022-10-16T00:31:01,357   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::applyVariantCallingFiles(const AlignmentVector&, const StringVector&, const StringVector&, const std::vector<std::vector<int> >&, float, float, bool, const char*)’:
2022-10-16T00:31:01,357   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:337:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,358     337 |             for (int vcfIndex = 0; vcfIndex < filenames.size(); vcfIndex++) {
2022-10-16T00:31:01,358         |                                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~
2022-10-16T00:31:01,359   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:360:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,359     360 |                         for (contigIndex = 0; contigIndex < contigs.size(); contigIndex++)
2022-10-16T00:31:01,359         |                                               ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2022-10-16T00:31:01,360   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:365:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,361     365 |                         if (contigIndex == contigs.size()) {
2022-10-16T00:31:01,361         |                             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2022-10-16T00:31:01,365   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:394:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,366     394 |                     for (int donorID = 0; donorID < feature.donorsInfo.size(); donorID++)
2022-10-16T00:31:01,366         |                                           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:31:01,414   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:397:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,414     397 |                         if (donorID >= donorsPositions[vcfIndex].size())
2022-10-16T00:31:01,415         |                             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-16T00:31:01,438   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::extractContigsFromLine(char*, ngs::StringVector&)’:
2022-10-16T00:31:01,439   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:528:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,439     528 |                 for (U = 0; U < contigs.size(); U++)
2022-10-16T00:31:01,440         |                             ~~^~~~~~~~~~~~~~~~
2022-10-16T00:31:01,440   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:533:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,440     533 |                 if (U == contigs.size())
2022-10-16T00:31:01,441         |                     ~~^~~~~~~~~~~~~~~~~
2022-10-16T00:31:01,442   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::extractDonorsFromLine(char*, std::vector<int>&, ngs::StringVector&)’:
2022-10-16T00:31:01,443   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:557:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,443     557 |                 for (U = 0; U < donors.size(); U++) {
2022-10-16T00:31:01,444         |                             ~~^~~~~~~~~~~~~~~
2022-10-16T00:31:01,444   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:564:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,445     564 |                 if (U == donors.size()) {
2022-10-16T00:31:01,445         |                     ~~^~~~~~~~~~~~~~~~
2022-10-16T00:31:01,446   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::obtainContigsAndDonors(const StringVector&, ngs::StringVector&, ngs::StringVector&, std::vector<std::vector<int> >&)’:
2022-10-16T00:31:01,447   build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:591:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-16T00:31:01,447     591 |             for (int C = 0; C < filenames.size(); C++) {
2022-10-16T00:31:01,447         |                             ~~^~~~~~~~~~~~~~~~~~
2022-10-16T00:31:09,803   generating build/temp.linux-armv7l-cpython-39/libtrimal.a from build/temp.linux-armv7l-cpython-39/Cleaner.o, build/temp.linux-armv7l-cpython-39/Alignment.o, build/temp.linux-armv7l-cpython-39/sequencesMatrix.o, build/temp.linux-armv7l-cpython-39/similarityMatrix.o, build/temp.linux-armv7l-cpython-39/Mold.o, build/temp.linux-armv7l-cpython-39/Gaps.o, build/temp.linux-armv7l-cpython-39/Manager.o, build/temp.linux-armv7l-cpython-39/Similarity.o, build/temp.linux-armv7l-cpython-39/Consistency.o, build/temp.linux-armv7l-cpython-39/errorMessages.o, build/temp.linux-armv7l-cpython-39/infoMessages.o, build/temp.linux-armv7l-cpython-39/warningMessages.o, build/temp.linux-armv7l-cpython-39/phylip_paml_state.o, build/temp.linux-armv7l-cpython-39/mega_interleaved_state.o, build/temp.linux-armv7l-cpython-39/phylip40_state.o, build/temp.linux-armv7l-cpython-39/clustal_state.o, build/temp.linux-armv7l-cpython-39/phylip32_m10_state.o, build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.o, build/temp.linux-armv7l-cpython-39/mega_sequential_state.o, build/temp.linux-armv7l-cpython-39/nexus_state.o, build/temp.linux-armv7l-cpython-39/htmlreport_state.o, build/temp.linux-armv7l-cpython-39/fasta_state.o, build/temp.linux-armv7l-cpython-39/pir_state.o, build/temp.linux-armv7l-cpython-39/phylip32_state.o, build/temp.linux-armv7l-cpython-39/fasta_m10_state.o, build/temp.linux-armv7l-cpython-39/phylip40_m10_state.o, build/temp.linux-armv7l-cpython-39/nexus_m10_state.o, build/temp.linux-armv7l-cpython-39/BaseFormatHandler.o, build/temp.linux-armv7l-cpython-39/utils.o, build/temp.linux-armv7l-cpython-39/InternalBenchmarker.o, build/temp.linux-armv7l-cpython-39/trimalManager.o, build/temp.linux-armv7l-cpython-39/VCFHandler.o
2022-10-16T00:31:09,806   arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libtrimal.a build/temp.linux-armv7l-cpython-39/Cleaner.o build/temp.linux-armv7l-cpython-39/Alignment.o build/temp.linux-armv7l-cpython-39/sequencesMatrix.o build/temp.linux-armv7l-cpython-39/similarityMatrix.o build/temp.linux-armv7l-cpython-39/Mold.o build/temp.linux-armv7l-cpython-39/Gaps.o build/temp.linux-armv7l-cpython-39/Manager.o build/temp.linux-armv7l-cpython-39/Similarity.o build/temp.linux-armv7l-cpython-39/Consistency.o build/temp.linux-armv7l-cpython-39/errorMessages.o build/temp.linux-armv7l-cpython-39/infoMessages.o build/temp.linux-armv7l-cpython-39/warningMessages.o build/temp.linux-armv7l-cpython-39/phylip_paml_state.o build/temp.linux-armv7l-cpython-39/mega_interleaved_state.o build/temp.linux-armv7l-cpython-39/phylip40_state.o build/temp.linux-armv7l-cpython-39/clustal_state.o build/temp.linux-armv7l-cpython-39/phylip32_m10_state.o build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.o build/temp.linux-armv7l-cpython-39/mega_sequential_state.o build/temp.linux-armv7l-cpython-39/nexus_state.o build/temp.linux-armv7l-cpython-39/htmlreport_state.o build/temp.linux-armv7l-cpython-39/fasta_state.o build/temp.linux-armv7l-cpython-39/pir_state.o build/temp.linux-armv7l-cpython-39/phylip32_state.o build/temp.linux-armv7l-cpython-39/fasta_m10_state.o build/temp.linux-armv7l-cpython-39/phylip40_m10_state.o build/temp.linux-armv7l-cpython-39/nexus_m10_state.o build/temp.linux-armv7l-cpython-39/BaseFormatHandler.o build/temp.linux-armv7l-cpython-39/utils.o build/temp.linux-armv7l-cpython-39/InternalBenchmarker.o build/temp.linux-armv7l-cpython-39/trimalManager.o build/temp.linux-armv7l-cpython-39/VCFHandler.o
2022-10-16T00:31:10,405   running build_ext
2022-10-16T00:31:10,413   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -I/usr/include/python3.9 -c build/temp.linux-armv7l-cpython-39/have_NEON.c -o build/temp.linux-armv7l-cpython-39/have_NEON.o
2022-10-16T00:31:11,263   arm-linux-gnueabihf-gcc -pthread -mfpu=neon build/temp.linux-armv7l-cpython-39/have_NEON.o -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-39 -lcpu_features -ltrimal -o build/temp.linux-armv7l-cpython-39/have_NEON
2022-10-16T00:31:11,554   checking whether compiler can build NEON code... yes, with -mfpu=neon
2022-10-16T00:31:22,409   Compiling pytrimal/_trimal.pyx because it changed.
2022-10-16T00:31:22,409   [1/1] Cythonizing pytrimal/_trimal.pyx
2022-10-16T00:31:22,411   building pytrimal._trimal with unix compiler
2022-10-16T00:31:22,412   generating build/temp.linux-armv7l-cpython-39/pytrimal/impl/neon.o from pytrimal/impl/neon.cpp
2022-10-16T00:31:22,413   creating build/temp.linux-armv7l-cpython-39/pytrimal
2022-10-16T00:31:22,414   creating build/temp.linux-armv7l-cpython-39/pytrimal/impl
2022-10-16T00:31:22,417   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -funroll-loops -mfpu=neon -DCYTHON_WITHOUT_ASSERTIONS=1 -D__ARM_NEON__=1 -Ipytrimal/patch -Ipytrimal/fileobj -Ipytrimal/impl -Ivendor/cpu_features/include -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pytrimal/impl/neon.cpp -o build/temp.linux-armv7l-cpython-39/pytrimal/impl/neon.o
2022-10-16T00:31:31,712   building 'pytrimal._trimal' extension
2022-10-16T00:31:31,715   creating build/temp.linux-armv7l-cpython-39/pytrimal/fileobj
2022-10-16T00:31:31,717   creating build/temp.linux-armv7l-cpython-39/pytrimal/patch
2022-10-16T00:31:31,719   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipytrimal/patch -Ipytrimal/fileobj -Ipytrimal/impl -Ivendor/cpu_features/include -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pytrimal/_trimal.cpp -o build/temp.linux-armv7l-cpython-39/pytrimal/_trimal.o -std=c++11 -funroll-loops
2022-10-16T00:32:52,672   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipytrimal/patch -Ipytrimal/fileobj -Ipytrimal/impl -Ivendor/cpu_features/include -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pytrimal/fileobj/pyreadbuf.cpp -o build/temp.linux-armv7l-cpython-39/pytrimal/fileobj/pyreadbuf.o -std=c++11 -funroll-loops
2022-10-16T00:32:56,823   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipytrimal/patch -Ipytrimal/fileobj -Ipytrimal/impl -Ivendor/cpu_features/include -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pytrimal/fileobj/pyreadintobuf.cpp -o build/temp.linux-armv7l-cpython-39/pytrimal/fileobj/pyreadintobuf.o -std=c++11 -funroll-loops
2022-10-16T00:32:59,585   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipytrimal/patch -Ipytrimal/fileobj -Ipytrimal/impl -Ivendor/cpu_features/include -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pytrimal/fileobj/pywritebuf.cpp -o build/temp.linux-armv7l-cpython-39/pytrimal/fileobj/pywritebuf.o -std=c++11 -funroll-loops
2022-10-16T00:33:02,240   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipytrimal/patch -Ipytrimal/fileobj -Ipytrimal/impl -Ivendor/cpu_features/include -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pytrimal/impl/generic.cpp -o build/temp.linux-armv7l-cpython-39/pytrimal/impl/generic.o -std=c++11 -funroll-loops
2022-10-16T00:33:10,454   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipytrimal/patch -Ipytrimal/fileobj -Ipytrimal/impl -Ivendor/cpu_features/include -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pytrimal/patch/reportsystem.cpp -o build/temp.linux-armv7l-cpython-39/pytrimal/patch/reportsystem.o -std=c++11 -funroll-loops
2022-10-16T00:33:16,640   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pytrimal/_trimal.o build/temp.linux-armv7l-cpython-39/pytrimal/fileobj/pyreadbuf.o build/temp.linux-armv7l-cpython-39/pytrimal/fileobj/pyreadintobuf.o build/temp.linux-armv7l-cpython-39/pytrimal/fileobj/pywritebuf.o build/temp.linux-armv7l-cpython-39/pytrimal/impl/generic.o build/temp.linux-armv7l-cpython-39/pytrimal/patch/reportsystem.o build/temp.linux-armv7l-cpython-39/libcpu_features.a build/temp.linux-armv7l-cpython-39/libtrimal.a build/temp.linux-armv7l-cpython-39/pytrimal/impl/neon.o -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-39 -lcpu_features -ltrimal -lcpu_features -ltrimal -o build/lib.linux-armv7l-cpython-39/pytrimal/_trimal.cpython-39-arm-linux-gnueabihf.so -Wno-alloc-size-larger-than -mfpu=neon
2022-10-16T00:33:20,774   installing to build/bdist.linux-armv7l/wheel
2022-10-16T00:33:20,775   running install
2022-10-16T00:33:20,838   running install_lib
2022-10-16T00:33:21,450   creating build/bdist.linux-armv7l
2022-10-16T00:33:21,452   creating build/bdist.linux-armv7l/wheel
2022-10-16T00:33:21,456   creating build/bdist.linux-armv7l/wheel/pytrimal
2022-10-16T00:33:21,459   copying build/lib.linux-armv7l-cpython-39/pytrimal/py.typed -> build/bdist.linux-armv7l/wheel/pytrimal
2022-10-16T00:33:21,462   copying build/lib.linux-armv7l-cpython-39/pytrimal/_version.py -> build/bdist.linux-armv7l/wheel/pytrimal
2022-10-16T00:33:21,467   copying build/lib.linux-armv7l-cpython-39/pytrimal/_trimal.pyi -> build/bdist.linux-armv7l/wheel/pytrimal
2022-10-16T00:33:21,473   creating build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,475   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/requirements.txt -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,480   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_automatic_trimmer.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,485   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_overlap_trimmer.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,489   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/__main__.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,493   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_manual_trimmer.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,500   creating build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,503   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.id70.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,513   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.seq40.res60.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,531   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.id50.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,537   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/halorhodopsin.afa -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,548   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.strictplus.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,560   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.automated1.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,573   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/PF12574.full.afa -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,578   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.maxidentity75.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,587   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/example.001.gt90.w3.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,591   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.clusters10.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,596   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,613   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.gappyout.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,627   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.seq80.res80.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,642   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.clusters5.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,646   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.cons60.gt90.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,661   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.strict.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,672   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.noduplicateseqs.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,692   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.cons40.gt40.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,706   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/example.001.AA.clw -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,710   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/pam70.json -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,714   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,717   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.noallgaps.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data
2022-10-16T00:33:21,734   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_similarity_matrix.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,738   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,742   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_representative_trimmer.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,747   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_doctest.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,751   copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_alignment.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests
2022-10-16T00:33:21,756   copying build/lib.linux-armv7l-cpython-39/pytrimal/__init__.py -> build/bdist.linux-armv7l/wheel/pytrimal
2022-10-16T00:33:21,760   copying build/lib.linux-armv7l-cpython-39/pytrimal/_trimal.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pytrimal
2022-10-16T00:33:22,157   running install_egg_info
2022-10-16T00:33:23,423   running egg_info
2022-10-16T00:33:24,038   writing pytrimal.egg-info/PKG-INFO
2022-10-16T00:33:24,619   writing dependency_links to pytrimal.egg-info/dependency_links.txt
2022-10-16T00:33:28,073   writing top-level names to pytrimal.egg-info/top_level.txt
2022-10-16T00:33:28,154   reading manifest file 'pytrimal.egg-info/SOURCES.txt'
2022-10-16T00:33:28,249   reading manifest template 'MANIFEST.in'
2022-10-16T00:33:29,347   warning: no previously-included files matching '*.html' found under directory 'pytrimal'
2022-10-16T00:33:29,356   warning: no files found matching '*.pxd' under directory 'pytrimal/patch'
2022-10-16T00:33:29,413   adding license file 'COPYING'
2022-10-16T00:33:29,465   writing manifest file 'pytrimal.egg-info/SOURCES.txt'
2022-10-16T00:33:29,470   Copying pytrimal.egg-info to build/bdist.linux-armv7l/wheel/pytrimal-0.5.4-py3.9.egg-info
2022-10-16T00:33:29,495   running install_scripts
2022-10-16T00:33:29,619   adding license file "COPYING" (matched pattern "COPYING*")
2022-10-16T00:33:29,676   creating build/bdist.linux-armv7l/wheel/pytrimal-0.5.4.dist-info/WHEEL
2022-10-16T00:33:29,681   creating '/tmp/pip-wheel-9fxcixlx/tmpd893ofer/pytrimal-0.5.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-10-16T00:33:29,687   adding 'pytrimal/__init__.py'
2022-10-16T00:33:33,689   adding 'pytrimal/_trimal.cpython-39-arm-linux-gnueabihf.so'
2022-10-16T00:33:33,868   adding 'pytrimal/_trimal.pyi'
2022-10-16T00:33:33,871   adding 'pytrimal/_version.py'
2022-10-16T00:33:33,873   adding 'pytrimal/py.typed'
2022-10-16T00:33:33,877   adding 'pytrimal/tests/__init__.py'
2022-10-16T00:33:33,880   adding 'pytrimal/tests/__main__.py'
2022-10-16T00:33:33,883   adding 'pytrimal/tests/requirements.txt'
2022-10-16T00:33:33,887   adding 'pytrimal/tests/test_alignment.py'
2022-10-16T00:33:33,891   adding 'pytrimal/tests/test_automatic_trimmer.py'
2022-10-16T00:33:33,894   adding 'pytrimal/tests/test_doctest.py'
2022-10-16T00:33:33,898   adding 'pytrimal/tests/test_manual_trimmer.py'
2022-10-16T00:33:33,901   adding 'pytrimal/tests/test_overlap_trimmer.py'
2022-10-16T00:33:33,905   adding 'pytrimal/tests/test_representative_trimmer.py'
2022-10-16T00:33:33,908   adding 'pytrimal/tests/test_similarity_matrix.py'
2022-10-16T00:33:33,939   adding 'pytrimal/tests/data/ENOG411BWBU.automated1.fasta'
2022-10-16T00:33:33,960   adding 'pytrimal/tests/data/ENOG411BWBU.clusters10.fasta'
2022-10-16T00:33:33,963   adding 'pytrimal/tests/data/ENOG411BWBU.clusters5.fasta'
2022-10-16T00:33:33,992   adding 'pytrimal/tests/data/ENOG411BWBU.cons40.gt40.fasta'
2022-10-16T00:33:34,022   adding 'pytrimal/tests/data/ENOG411BWBU.cons60.gt90.fasta'
2022-10-16T00:33:34,061   adding 'pytrimal/tests/data/ENOG411BWBU.fasta'
2022-10-16T00:33:34,095   adding 'pytrimal/tests/data/ENOG411BWBU.gappyout.fasta'
2022-10-16T00:33:34,103   adding 'pytrimal/tests/data/ENOG411BWBU.id50.fasta'
2022-10-16T00:33:34,117   adding 'pytrimal/tests/data/ENOG411BWBU.id70.fasta'
2022-10-16T00:33:34,136   adding 'pytrimal/tests/data/ENOG411BWBU.maxidentity75.fasta'
2022-10-16T00:33:34,173   adding 'pytrimal/tests/data/ENOG411BWBU.noallgaps.fasta'
2022-10-16T00:33:34,213   adding 'pytrimal/tests/data/ENOG411BWBU.noduplicateseqs.fasta'
2022-10-16T00:33:34,253   adding 'pytrimal/tests/data/ENOG411BWBU.seq40.res60.fasta'
2022-10-16T00:33:34,287   adding 'pytrimal/tests/data/ENOG411BWBU.seq80.res80.fasta'
2022-10-16T00:33:34,314   adding 'pytrimal/tests/data/ENOG411BWBU.strict.fasta'
2022-10-16T00:33:34,336   adding 'pytrimal/tests/data/ENOG411BWBU.strictplus.fasta'
2022-10-16T00:33:34,342   adding 'pytrimal/tests/data/PF12574.full.afa'
2022-10-16T00:33:34,345   adding 'pytrimal/tests/data/__init__.py'
2022-10-16T00:33:34,348   adding 'pytrimal/tests/data/example.001.AA.clw'
2022-10-16T00:33:34,351   adding 'pytrimal/tests/data/example.001.gt90.w3.fasta'
2022-10-16T00:33:34,367   adding 'pytrimal/tests/data/halorhodopsin.afa'
2022-10-16T00:33:34,374   adding 'pytrimal/tests/data/pam70.json'
2022-10-16T00:33:34,391   adding 'pytrimal-0.5.4.dist-info/COPYING'
2022-10-16T00:33:34,396   adding 'pytrimal-0.5.4.dist-info/METADATA'
2022-10-16T00:33:34,399   adding 'pytrimal-0.5.4.dist-info/WHEEL'
2022-10-16T00:33:34,401   adding 'pytrimal-0.5.4.dist-info/top_level.txt'
2022-10-16T00:33:34,404   adding 'pytrimal-0.5.4.dist-info/RECORD'
2022-10-16T00:33:34,533   removing build/bdist.linux-armv7l/wheel
2022-10-16T00:33:35,188   Building wheel for pytrimal (pyproject.toml): finished with status 'done'
2022-10-16T00:33:35,382   Created wheel for pytrimal: filename=pytrimal-0.5.4-cp39-cp39-linux_armv7l.whl size=3445269 sha256=f057508a510a8b81ecbba935a0c1b246fab18e3b22b3ca8355229751d1ae812b
2022-10-16T00:33:35,384   Stored in directory: /tmp/pip-ephem-wheel-cache-sc257hwp/wheels/2d/81/67/f90bc771fa0108fc49f6a8a5620fb33581f45ffdcfedaead2c
2022-10-16T00:33:35,417 Successfully built pytrimal
2022-10-16T00:33:35,684 Removed build tracker: '/tmp/pip-build-tracker-aj8dz6qd'