2022-10-17T18:07:25,727 Created temporary directory: /tmp/pip-ephem-wheel-cache-lw2nb61k
2022-10-17T18:07:25,730 Created temporary directory: /tmp/pip-build-tracker-4i84aqc3
2022-10-17T18:07:25,730 Initialized build tracking at /tmp/pip-build-tracker-4i84aqc3
2022-10-17T18:07:25,730 Created build tracker: /tmp/pip-build-tracker-4i84aqc3
2022-10-17T18:07:25,730 Entered build tracker: /tmp/pip-build-tracker-4i84aqc3
2022-10-17T18:07:25,731 Created temporary directory: /tmp/pip-wheel-o12qoe__
2022-10-17T18:07:25,764 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-17T18:07:25,768 2 location(s) to search for versions of liftofftools:
2022-10-17T18:07:25,768 * https://pypi.org/simple/liftofftools/
2022-10-17T18:07:25,768 * https://www.piwheels.org/simple/liftofftools/
2022-10-17T18:07:25,769 Fetching project page and analyzing links: https://pypi.org/simple/liftofftools/
2022-10-17T18:07:25,769 Getting page https://pypi.org/simple/liftofftools/
2022-10-17T18:07:25,771 Found index url https://pypi.org/simple
2022-10-17T18:07:25,939 Fetched page https://pypi.org/simple/liftofftools/ as application/vnd.pypi.simple.v1+json
2022-10-17T18:07:25,942   Found link https://files.pythonhosted.org/packages/64/e4/dbd9d0b263ed1cb3125bc8710bd6257bea8a5e408b63d24d93cc6a96f0a4/LiftoffTools-0.3.0.tar.gz (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.0
2022-10-17T18:07:25,942   Found link https://files.pythonhosted.org/packages/5b/b0/05822a17173cebb88ff33b76ebe9cc84b6086432abb91824d6c8ba5a649e/LiftoffTools-0.3.1.tar.gz (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.1
2022-10-17T18:07:25,943   Found link https://files.pythonhosted.org/packages/ea/78/76f1304aa56278bdf985dc5bd49c89f213ac2c647275feaef380608f12fa/LiftoffTools-0.4.tar.gz (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4
2022-10-17T18:07:25,943   Found link https://files.pythonhosted.org/packages/7d/d4/e08037d9ea4722890c29741846507b86ee5a222cfac388b4298300c97e3c/LiftoffTools-0.4.1.tar.gz (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.1
2022-10-17T18:07:25,944   Found link https://files.pythonhosted.org/packages/d9/72/5c953331024dcb2ca13f3fc2584ebaa7b96acc24bd435a4119f5067dd36a/LiftoffTools-0.4.2.tar.gz (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.2
2022-10-17T18:07:25,945   Found link https://files.pythonhosted.org/packages/76/68/e32c47499084db2c92780aaa1cc1d55a754c94cc3ca274f51184575d7c39/LiftoffTools-0.4.3.tar.gz (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.3
2022-10-17T18:07:25,945   Found link https://files.pythonhosted.org/packages/1f/b7/709549fee1bb3a1aa94fd18188b351ce1c2167e7fb6f06b25c15dadc43e4/LiftoffTools-0.4.4.tar.gz (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.4
2022-10-17T18:07:25,945 Fetching project page and analyzing links: https://www.piwheels.org/simple/liftofftools/
2022-10-17T18:07:25,946 Getting page https://www.piwheels.org/simple/liftofftools/
2022-10-17T18:07:25,947 Found index url https://www.piwheels.org/simple
2022-10-17T18:07:26,131 Fetched page https://www.piwheels.org/simple/liftofftools/ as text/html
2022-10-17T18:07:26,134   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.4.3-py3-none-any.whl#sha256=ca0100e0c5e1a4279136e1da180be1da0fd6cb1a9a7f75dc768d14f335a7e26a (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-10-17T18:07:26,134   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.4.2-py3-none-any.whl#sha256=bd217473d81335b9893dc325609017f56455216e904f47e41de613d2f3088193 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-10-17T18:07:26,134   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.4.1-py3-none-any.whl#sha256=8f66eeb3911ec224668edb179e9a25ee769d032d4a44cb1c3dc1037df7c6fb57 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-10-17T18:07:26,134   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.4-py3-none-any.whl#sha256=a4132a138386e47dd5016defc9d8331fbe6a801edd3da6ce29214d6587b6d2eb (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-10-17T18:07:26,135   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.3.1-py3-none-any.whl#sha256=27209759ac60f195ffa4379f4930b89fb066f41a7be568ed8418b24183e6ea82 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-10-17T18:07:26,135   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.3.0-py3-none-any.whl#sha256=feeceae87ffc8bdc4077f56d6f9a59de79f2e5bdccea7c71ad41e890991a3797 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-10-17T18:07:26,135 Skipping link: not a file: https://www.piwheels.org/simple/liftofftools/
2022-10-17T18:07:26,135 Skipping link: not a file: https://pypi.org/simple/liftofftools/
2022-10-17T18:07:26,155 Given no hashes to check 1 links for project 'liftofftools': discarding no candidates
2022-10-17T18:07:26,172 Collecting liftofftools==0.4.4
2022-10-17T18:07:26,174   Created temporary directory: /tmp/pip-unpack-rxn74173
2022-10-17T18:07:26,225   Downloading LiftoffTools-0.4.4.tar.gz (15 kB)
2022-10-17T18:07:26,290   Added liftofftools==0.4.4 from https://files.pythonhosted.org/packages/1f/b7/709549fee1bb3a1aa94fd18188b351ce1c2167e7fb6f06b25c15dadc43e4/LiftoffTools-0.4.4.tar.gz to build tracker '/tmp/pip-build-tracker-4i84aqc3'
2022-10-17T18:07:26,292   Running setup.py (path:/tmp/pip-wheel-o12qoe__/liftofftools_35721c889928492992f3d02aa16a4815/setup.py) egg_info for package liftofftools
2022-10-17T18:07:26,293   Created temporary directory: /tmp/pip-pip-egg-info-3wumpvwl
2022-10-17T18:07:26,293   Preparing metadata (setup.py): started
2022-10-17T18:07:26,294   Running command python setup.py egg_info
2022-10-17T18:07:27,306   running egg_info
2022-10-17T18:07:27,308   creating /tmp/pip-pip-egg-info-3wumpvwl/LiftoffTools.egg-info
2022-10-17T18:07:27,329   writing /tmp/pip-pip-egg-info-3wumpvwl/LiftoffTools.egg-info/PKG-INFO
2022-10-17T18:07:27,332   writing dependency_links to /tmp/pip-pip-egg-info-3wumpvwl/LiftoffTools.egg-info/dependency_links.txt
2022-10-17T18:07:27,333   writing entry points to /tmp/pip-pip-egg-info-3wumpvwl/LiftoffTools.egg-info/entry_points.txt
2022-10-17T18:07:27,335   writing requirements to /tmp/pip-pip-egg-info-3wumpvwl/LiftoffTools.egg-info/requires.txt
2022-10-17T18:07:27,336   writing top-level names to /tmp/pip-pip-egg-info-3wumpvwl/LiftoffTools.egg-info/top_level.txt
2022-10-17T18:07:27,337   writing manifest file '/tmp/pip-pip-egg-info-3wumpvwl/LiftoffTools.egg-info/SOURCES.txt'
2022-10-17T18:07:27,405   reading manifest file '/tmp/pip-pip-egg-info-3wumpvwl/LiftoffTools.egg-info/SOURCES.txt'
2022-10-17T18:07:27,410   writing manifest file '/tmp/pip-pip-egg-info-3wumpvwl/LiftoffTools.egg-info/SOURCES.txt'
2022-10-17T18:07:27,523   Preparing metadata (setup.py): finished with status 'done'
2022-10-17T18:07:27,529   Source in /tmp/pip-wheel-o12qoe__/liftofftools_35721c889928492992f3d02aa16a4815 has version 0.4.4, which satisfies requirement liftofftools==0.4.4 from https://files.pythonhosted.org/packages/1f/b7/709549fee1bb3a1aa94fd18188b351ce1c2167e7fb6f06b25c15dadc43e4/LiftoffTools-0.4.4.tar.gz
2022-10-17T18:07:27,530   Removed liftofftools==0.4.4 from https://files.pythonhosted.org/packages/1f/b7/709549fee1bb3a1aa94fd18188b351ce1c2167e7fb6f06b25c15dadc43e4/LiftoffTools-0.4.4.tar.gz from build tracker '/tmp/pip-build-tracker-4i84aqc3'
2022-10-17T18:07:27,537 Created temporary directory: /tmp/pip-unpack-xrpctm7d
2022-10-17T18:07:27,537 Building wheels for collected packages: liftofftools
2022-10-17T18:07:27,542   Created temporary directory: /tmp/pip-wheel-2d4rlsuv
2022-10-17T18:07:27,542   Building wheel for liftofftools (setup.py): started
2022-10-17T18:07:27,543   Destination directory: /tmp/pip-wheel-2d4rlsuv
2022-10-17T18:07:27,543   Running command python setup.py bdist_wheel
2022-10-17T18:07:28,553   running bdist_wheel
2022-10-17T18:07:28,831   running build
2022-10-17T18:07:28,832   running build_py
2022-10-17T18:07:28,855   creating build
2022-10-17T18:07:28,855   creating build/lib
2022-10-17T18:07:28,856   creating build/lib/liftofftools
2022-10-17T18:07:28,857   copying liftofftools/sequences.py -> build/lib/liftofftools
2022-10-17T18:07:28,859   copying liftofftools/liftofftools.py -> build/lib/liftofftools
2022-10-17T18:07:28,861   copying liftofftools/cli_arguments.py -> build/lib/liftofftools
2022-10-17T18:07:28,863   copying liftofftools/filepaths.py -> build/lib/liftofftools
2022-10-17T18:07:28,865   copying liftofftools/subprocesses.py -> build/lib/liftofftools
2022-10-17T18:07:28,866   copying liftofftools/test_parasail.py -> build/lib/liftofftools
2022-10-17T18:07:28,868   copying liftofftools/__init__.py -> build/lib/liftofftools
2022-10-17T18:07:28,869   copying liftofftools/annotation.py -> build/lib/liftofftools
2022-10-17T18:07:28,872   copying liftofftools/alignment.py -> build/lib/liftofftools
2022-10-17T18:07:28,874   creating build/lib/liftofftools/synteny
2022-10-17T18:07:28,875   copying liftofftools/synteny/synteny.py -> build/lib/liftofftools/synteny
2022-10-17T18:07:28,877   copying liftofftools/synteny/__init__.py -> build/lib/liftofftools/synteny
2022-10-17T18:07:28,879   copying liftofftools/synteny/plot_gene_order.py -> build/lib/liftofftools/synteny
2022-10-17T18:07:28,881   creating build/lib/liftofftools/tests
2022-10-17T18:07:28,882   copying liftofftools/tests/__init__.py -> build/lib/liftofftools/tests
2022-10-17T18:07:28,884   creating build/lib/liftofftools/cluster_analysis
2022-10-17T18:07:28,885   copying liftofftools/cluster_analysis/clusters.py -> build/lib/liftofftools/cluster_analysis
2022-10-17T18:07:28,887   copying liftofftools/cluster_analysis/mmseqs_workflow.py -> build/lib/liftofftools/cluster_analysis
2022-10-17T18:07:28,889   copying liftofftools/cluster_analysis/analyze_clusters.py -> build/lib/liftofftools/cluster_analysis
2022-10-17T18:07:28,891   copying liftofftools/cluster_analysis/__init__.py -> build/lib/liftofftools/cluster_analysis
2022-10-17T18:07:28,893   creating build/lib/liftofftools/variants
2022-10-17T18:07:28,894   copying liftofftools/variants/variants.py -> build/lib/liftofftools/variants
2022-10-17T18:07:28,896   copying liftofftools/variants/__init__.py -> build/lib/liftofftools/variants
2022-10-17T18:07:28,926   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-10-17T18:07:28,926     warnings.warn(
2022-10-17T18:07:28,948   installing to build/bdist.linux-armv7l/wheel
2022-10-17T18:07:28,948   running install
2022-10-17T18:07:28,973   running install_lib
2022-10-17T18:07:28,996   creating build/bdist.linux-armv7l
2022-10-17T18:07:28,997   creating build/bdist.linux-armv7l/wheel
2022-10-17T18:07:28,998   creating build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,000   creating build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-10-17T18:07:29,001   copying build/lib/liftofftools/synteny/synteny.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-10-17T18:07:29,003   copying build/lib/liftofftools/synteny/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-10-17T18:07:29,005   copying build/lib/liftofftools/synteny/plot_gene_order.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-10-17T18:07:29,007   copying build/lib/liftofftools/sequences.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,009   copying build/lib/liftofftools/liftofftools.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,011   copying build/lib/liftofftools/cli_arguments.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,013   creating build/bdist.linux-armv7l/wheel/liftofftools/tests
2022-10-17T18:07:29,014   copying build/lib/liftofftools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/tests
2022-10-17T18:07:29,016   creating build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-10-17T18:07:29,017   copying build/lib/liftofftools/cluster_analysis/clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-10-17T18:07:29,019   copying build/lib/liftofftools/cluster_analysis/mmseqs_workflow.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-10-17T18:07:29,021   copying build/lib/liftofftools/cluster_analysis/analyze_clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-10-17T18:07:29,023   copying build/lib/liftofftools/cluster_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-10-17T18:07:29,025   copying build/lib/liftofftools/filepaths.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,027   copying build/lib/liftofftools/subprocesses.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,029   copying build/lib/liftofftools/test_parasail.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,030   copying build/lib/liftofftools/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,032   copying build/lib/liftofftools/annotation.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,035   creating build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-10-17T18:07:29,036   copying build/lib/liftofftools/variants/variants.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-10-17T18:07:29,038   copying build/lib/liftofftools/variants/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-10-17T18:07:29,040   copying build/lib/liftofftools/alignment.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-10-17T18:07:29,042   running install_egg_info
2022-10-17T18:07:29,098   running egg_info
2022-10-17T18:07:29,118   writing LiftoffTools.egg-info/PKG-INFO
2022-10-17T18:07:29,120   writing dependency_links to LiftoffTools.egg-info/dependency_links.txt
2022-10-17T18:07:29,122   writing entry points to LiftoffTools.egg-info/entry_points.txt
2022-10-17T18:07:29,123   writing requirements to LiftoffTools.egg-info/requires.txt
2022-10-17T18:07:29,124   writing top-level names to LiftoffTools.egg-info/top_level.txt
2022-10-17T18:07:29,149   reading manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-10-17T18:07:29,154   writing manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-10-17T18:07:29,155   Copying LiftoffTools.egg-info to build/bdist.linux-armv7l/wheel/LiftoffTools-0.4.4-py3.9.egg-info
2022-10-17T18:07:29,168   running install_scripts
2022-10-17T18:07:29,250   creating build/bdist.linux-armv7l/wheel/LiftoffTools-0.4.4.dist-info/WHEEL
2022-10-17T18:07:29,252   creating '/tmp/pip-wheel-2d4rlsuv/LiftoffTools-0.4.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-10-17T18:07:29,256   adding 'liftofftools/__init__.py'
2022-10-17T18:07:29,257   adding 'liftofftools/alignment.py'
2022-10-17T18:07:29,259   adding 'liftofftools/annotation.py'
2022-10-17T18:07:29,260   adding 'liftofftools/cli_arguments.py'
2022-10-17T18:07:29,261   adding 'liftofftools/filepaths.py'
2022-10-17T18:07:29,262   adding 'liftofftools/liftofftools.py'
2022-10-17T18:07:29,264   adding 'liftofftools/sequences.py'
2022-10-17T18:07:29,265   adding 'liftofftools/subprocesses.py'
2022-10-17T18:07:29,266   adding 'liftofftools/test_parasail.py'
2022-10-17T18:07:29,268   adding 'liftofftools/cluster_analysis/__init__.py'
2022-10-17T18:07:29,269   adding 'liftofftools/cluster_analysis/analyze_clusters.py'
2022-10-17T18:07:29,271   adding 'liftofftools/cluster_analysis/clusters.py'
2022-10-17T18:07:29,272   adding 'liftofftools/cluster_analysis/mmseqs_workflow.py'
2022-10-17T18:07:29,274   adding 'liftofftools/synteny/__init__.py'
2022-10-17T18:07:29,275   adding 'liftofftools/synteny/plot_gene_order.py'
2022-10-17T18:07:29,277   adding 'liftofftools/synteny/synteny.py'
2022-10-17T18:07:29,278   adding 'liftofftools/tests/__init__.py'
2022-10-17T18:07:29,280   adding 'liftofftools/variants/__init__.py'
2022-10-17T18:07:29,281   adding 'liftofftools/variants/variants.py'
2022-10-17T18:07:29,282   adding 'LiftoffTools-0.4.4.dist-info/METADATA'
2022-10-17T18:07:29,283   adding 'LiftoffTools-0.4.4.dist-info/WHEEL'
2022-10-17T18:07:29,284   adding 'LiftoffTools-0.4.4.dist-info/entry_points.txt'
2022-10-17T18:07:29,285   adding 'LiftoffTools-0.4.4.dist-info/top_level.txt'
2022-10-17T18:07:29,286   adding 'LiftoffTools-0.4.4.dist-info/RECORD'
2022-10-17T18:07:29,287   removing build/bdist.linux-armv7l/wheel
2022-10-17T18:07:29,436   Building wheel for liftofftools (setup.py): finished with status 'done'
2022-10-17T18:07:29,440   Created wheel for liftofftools: filename=LiftoffTools-0.4.4-py3-none-any.whl size=18365 sha256=c70f9132ea2105b2d1ec7016f75b7e3233a27e4a8cc92d2f7aec24e606eba293
2022-10-17T18:07:29,441   Stored in directory: /tmp/pip-ephem-wheel-cache-lw2nb61k/wheels/9e/2a/6a/f56a33c50a606c8f5dc3301c7686900c4535d17366f7aad361
2022-10-17T18:07:29,453 Successfully built liftofftools
2022-10-17T18:07:29,457 Removed build tracker: '/tmp/pip-build-tracker-4i84aqc3'