2022-10-20T08:16:52,482 Created temporary directory: /tmp/pip-ephem-wheel-cache-_us5tdaz
2022-10-20T08:16:52,484 Created temporary directory: /tmp/pip-build-tracker-4_6s6n6x
2022-10-20T08:16:52,485 Initialized build tracking at /tmp/pip-build-tracker-4_6s6n6x
2022-10-20T08:16:52,485 Created build tracker: /tmp/pip-build-tracker-4_6s6n6x
2022-10-20T08:16:52,485 Entered build tracker: /tmp/pip-build-tracker-4_6s6n6x
2022-10-20T08:16:52,486 Created temporary directory: /tmp/pip-wheel-jg1lhm7r
2022-10-20T08:16:52,515 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-20T08:16:52,519 2 location(s) to search for versions of moleculekit:
2022-10-20T08:16:52,519 * https://pypi.org/simple/moleculekit/
2022-10-20T08:16:52,519 * https://www.piwheels.org/simple/moleculekit/
2022-10-20T08:16:52,520 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2022-10-20T08:16:52,520 Getting page https://pypi.org/simple/moleculekit/
2022-10-20T08:16:52,522 Found index url https://pypi.org/simple
2022-10-20T08:16:52,728 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2022-10-20T08:16:52,758   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,758   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2022-10-20T08:16:52,758   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,759   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2022-10-20T08:16:52,759   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,759   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2022-10-20T08:16:52,759   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,760   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2022-10-20T08:16:52,760   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,760   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2022-10-20T08:16:52,760   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,761   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2022-10-20T08:16:52,761   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,761   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2022-10-20T08:16:52,761   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,762   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2022-10-20T08:16:52,762   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,762   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2022-10-20T08:16:52,762   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,763   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2022-10-20T08:16:52,763   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,763   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2022-10-20T08:16:52,763   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,764   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2022-10-20T08:16:52,764   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,764   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2022-10-20T08:16:52,764   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,765   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2022-10-20T08:16:52,765   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,765   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2022-10-20T08:16:52,765   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,766   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2022-10-20T08:16:52,766   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,766   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2022-10-20T08:16:52,766   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,767   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2022-10-20T08:16:52,767   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,767   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2022-10-20T08:16:52,767   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,768   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2022-10-20T08:16:52,768   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,768   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2022-10-20T08:16:52,768   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,768   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2022-10-20T08:16:52,769   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,769   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2022-10-20T08:16:52,769   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,769   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2022-10-20T08:16:52,770   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,770   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2022-10-20T08:16:52,770   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,770   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2022-10-20T08:16:52,771   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,771   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2022-10-20T08:16:52,771   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,771   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2022-10-20T08:16:52,772   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,772   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2022-10-20T08:16:52,772   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,772   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2022-10-20T08:16:52,773   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,773   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2022-10-20T08:16:52,773   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,773   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2022-10-20T08:16:52,774   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-20T08:16:52,774   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2022-10-20T08:16:52,792   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
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2022-10-20T08:16:52,793   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
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2022-10-20T08:16:52,795   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2022-10-20T08:16:52,795   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
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2022-10-20T08:16:52,797   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2022-10-20T08:16:52,797   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2022-10-20T08:16:52,798   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2022-10-20T08:16:52,798   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2022-10-20T08:16:52,798   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2022-10-20T08:16:52,798   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2022-10-20T08:16:52,799   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2022-10-20T08:16:52,799   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2022-10-20T08:16:52,799   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2022-10-20T08:16:52,799   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2022-10-20T08:16:52,800   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2022-10-20T08:16:52,800   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2022-10-20T08:16:52,800   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2022-10-20T08:16:52,801   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2022-10-20T08:16:52,801   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2022-10-20T08:16:52,801   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2022-10-20T08:16:52,801   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2022-10-20T08:16:52,802   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2022-10-20T08:16:52,802   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2022-10-20T08:16:52,802   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2022-10-20T08:16:52,802   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2022-10-20T08:16:52,803   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2022-10-20T08:16:52,803   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2022-10-20T08:16:52,803   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2022-10-20T08:16:52,803   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2022-10-20T08:16:52,804   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2022-10-20T08:16:52,804   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2022-10-20T08:16:52,804   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2022-10-20T08:16:52,805   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2022-10-20T08:16:52,806   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2022-10-20T08:16:52,807   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2022-10-20T08:16:52,807 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2022-10-20T08:16:52,807 Getting page https://www.piwheels.org/simple/moleculekit/
2022-10-20T08:16:52,808 Found index url https://www.piwheels.org/simple
2022-10-20T08:16:52,997 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2022-10-20T08:16:53,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv6l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv6l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
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2022-10-20T08:16:53,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,044   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,044   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,044   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,044   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,044   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,045   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,045   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,045   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,045   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,045   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,046   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,046   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,046   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,046   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,046   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,047   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,047   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,047   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,047   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,047   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
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2022-10-20T08:16:53,060   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,060   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,061   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,061   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,061   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,061   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,061   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,062   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,062   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,062   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,062   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,062   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,063   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,063   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,063   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,063   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,063   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2022-10-20T08:16:53,064 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2022-10-20T08:16:53,064 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2022-10-20T08:16:53,099 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2022-10-20T08:16:53,117 Collecting moleculekit==1.4.8
2022-10-20T08:16:53,119   Created temporary directory: /tmp/pip-unpack-9_go_4i7
2022-10-20T08:16:53,880   Downloading moleculekit-1.4.8.tar.gz (1.6 MB)
2022-10-20T08:16:54,837   Added moleculekit==1.4.8 from https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz to build tracker '/tmp/pip-build-tracker-4_6s6n6x'
2022-10-20T08:16:54,850   Created temporary directory: /tmp/pip-build-env-h_3qkz5y
2022-10-20T08:16:54,860   Installing build dependencies: started
2022-10-20T08:16:54,861   Running command pip subprocess to install build dependencies
2022-10-20T08:16:56,052   Using pip 22.2.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-10-20T08:16:56,483   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-20T08:16:58,681   Collecting setuptools
2022-10-20T08:16:58,810     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB)
2022-10-20T08:17:00,403   Collecting numpy>=1.18.5
2022-10-20T08:17:02,408     Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.4-cp39-cp39-linux_armv7l.whl (12.4 MB)
2022-10-20T08:17:05,040   Collecting Cython>=0.29.21
2022-10-20T08:17:05,518     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-10-20T08:17:05,757   Collecting toml
2022-10-20T08:17:05,774     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2022-10-20T08:17:08,379   Collecting versioneer[toml]==0.26
2022-10-20T08:17:09,022     Using cached versioneer-0.26-py3-none-any.whl (44 kB)
2022-10-20T08:17:09,200   Collecting tomli
2022-10-20T08:17:09,218     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-10-20T08:17:11,027   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2022-10-20T08:17:11,066     Creating /tmp/pip-build-env-h_3qkz5y/overlay/bin
2022-10-20T08:17:11,068     changing mode of /tmp/pip-build-env-h_3qkz5y/overlay/bin/versioneer to 755
2022-10-20T08:17:22,134     changing mode of /tmp/pip-build-env-h_3qkz5y/overlay/bin/f2py to 755
2022-10-20T08:17:22,137     changing mode of /tmp/pip-build-env-h_3qkz5y/overlay/bin/f2py3 to 755
2022-10-20T08:17:22,139     changing mode of /tmp/pip-build-env-h_3qkz5y/overlay/bin/f2py3.9 to 755
2022-10-20T08:17:25,524     changing mode of /tmp/pip-build-env-h_3qkz5y/overlay/bin/cygdb to 755
2022-10-20T08:17:25,527     changing mode of /tmp/pip-build-env-h_3qkz5y/overlay/bin/cython to 755
2022-10-20T08:17:25,529     changing mode of /tmp/pip-build-env-h_3qkz5y/overlay/bin/cythonize to 755
2022-10-20T08:17:25,557   Successfully installed Cython-0.29.32 numpy-1.23.4 setuptools-65.5.0 toml-0.10.2 tomli-2.0.1 versioneer-0.26
2022-10-20T08:17:25,597   --- Logging error ---
2022-10-20T08:17:25,603   Traceback (most recent call last):
2022-10-20T08:17:25,603     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 177, in emit
2022-10-20T08:17:25,604       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-10-20T08:17:25,604     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1673, in print
2022-10-20T08:17:25,604       extend(render(renderable, render_options))
2022-10-20T08:17:25,604     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1305, in render
2022-10-20T08:17:25,604       for render_output in iter_render:
2022-10-20T08:17:25,604     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-10-20T08:17:25,604       for line in lines:
2022-10-20T08:17:25,604     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/segment.py", line 249, in split_lines
2022-10-20T08:17:25,605       for segment in segments:
2022-10-20T08:17:25,605     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1283, in render
2022-10-20T08:17:25,605       renderable = rich_cast(renderable)
2022-10-20T08:17:25,605     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-10-20T08:17:25,605       renderable = cast_method()
2022-10-20T08:17:25,605     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-10-20T08:17:25,605       pip_cmd = get_best_invocation_for_this_pip()
2022-10-20T08:17:25,605     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-10-20T08:17:25,606       if found_executable and os.path.samefile(
2022-10-20T08:17:25,606     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-10-20T08:17:25,606       s2 = os.stat(f2)
2022-10-20T08:17:25,606   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-10-20T08:17:25,606   Call stack:
2022-10-20T08:17:25,609     File "/usr/local/lib/python3.9/dist-packages/pip/__pip-runner__.py", line 36, in <module>
2022-10-20T08:17:25,609       runpy.run_module("pip", run_name="__main__", alter_sys=True)
2022-10-20T08:17:25,609     File "/usr/lib/python3.9/runpy.py", line 210, in run_module
2022-10-20T08:17:25,609       return _run_module_code(code, init_globals, run_name, mod_spec)
2022-10-20T08:17:25,609     File "/usr/lib/python3.9/runpy.py", line 97, in _run_module_code
2022-10-20T08:17:25,609       _run_code(code, mod_globals, init_globals,
2022-10-20T08:17:25,610     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-10-20T08:17:25,610       exec(code, run_globals)
2022-10-20T08:17:25,610     File "/usr/local/lib/python3.9/dist-packages/pip/__main__.py", line 31, in <module>
2022-10-20T08:17:25,610       sys.exit(_main())
2022-10-20T08:17:25,610     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/main.py", line 70, in main
2022-10-20T08:17:25,610       return command.main(cmd_args)
2022-10-20T08:17:25,610     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 101, in main
2022-10-20T08:17:25,610       return self._main(args)
2022-10-20T08:17:25,611     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 223, in _main
2022-10-20T08:17:25,611       self.handle_pip_version_check(options)
2022-10-20T08:17:25,611     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 190, in handle_pip_version_check
2022-10-20T08:17:25,611       pip_self_version_check(session, options)
2022-10-20T08:17:25,611     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 236, in pip_self_version_check
2022-10-20T08:17:25,611       logger.warning("[present-rich] %s", upgrade_prompt)
2022-10-20T08:17:25,611     File "/usr/lib/python3.9/logging/__init__.py", line 1454, in warning
2022-10-20T08:17:25,611       self._log(WARNING, msg, args, **kwargs)
2022-10-20T08:17:25,612     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-10-20T08:17:25,612       self.handle(record)
2022-10-20T08:17:25,612     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-10-20T08:17:25,612       self.callHandlers(record)
2022-10-20T08:17:25,612     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-10-20T08:17:25,612       hdlr.handle(record)
2022-10-20T08:17:25,612     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-10-20T08:17:25,612       self.emit(record)
2022-10-20T08:17:25,612     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 179, in emit
2022-10-20T08:17:25,613       self.handleError(record)
2022-10-20T08:17:25,613   Message: '[present-rich] %s'
2022-10-20T08:17:25,613   Arguments: (UpgradePrompt(old='22.2.2', new='22.3'),)
2022-10-20T08:17:25,999   Installing build dependencies: finished with status 'done'
2022-10-20T08:17:26,005   Getting requirements to build wheel: started
2022-10-20T08:17:26,006   Running command Getting requirements to build wheel
2022-10-20T08:17:34,323   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-10-20T08:17:34,324     warnings.warn(msg, _BetaConfiguration)
2022-10-20T08:17:34,602   running egg_info
2022-10-20T08:17:34,618   writing moleculekit.egg-info/PKG-INFO
2022-10-20T08:17:34,620   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2022-10-20T08:17:34,622   writing requirements to moleculekit.egg-info/requires.txt
2022-10-20T08:17:34,623   writing top-level names to moleculekit.egg-info/top_level.txt
2022-10-20T08:17:34,667   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-10-20T08:17:34,672   reading manifest template 'MANIFEST.in'
2022-10-20T08:17:34,673   warning: no files found matching 'moleculekit/share'
2022-10-20T08:17:34,783   no previously-included directories found matching 'moleculekit/test-data'
2022-10-20T08:17:34,784   no previously-included directories found matching 'moleculekit/tests'
2022-10-20T08:17:34,785   no previously-included directories found matching 'package'
2022-10-20T08:17:34,785   adding license file 'LICENSE'
2022-10-20T08:17:34,793   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-10-20T08:17:35,041   Getting requirements to build wheel: finished with status 'done'
2022-10-20T08:17:35,059   Installing backend dependencies: started
2022-10-20T08:17:35,060   Running command pip subprocess to install backend dependencies
2022-10-20T08:17:36,321   Using pip 22.2.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-10-20T08:17:36,749   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-20T08:17:37,184   Collecting wheel
2022-10-20T08:17:37,202     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-10-20T08:17:38,624   Installing collected packages: wheel
2022-10-20T08:17:38,765     Creating /tmp/pip-build-env-h_3qkz5y/normal/bin
2022-10-20T08:17:38,768     changing mode of /tmp/pip-build-env-h_3qkz5y/normal/bin/wheel to 755
2022-10-20T08:17:38,781   Successfully installed wheel-0.37.1
2022-10-20T08:17:38,820   --- Logging error ---
2022-10-20T08:17:38,826   Traceback (most recent call last):
2022-10-20T08:17:38,826     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 177, in emit
2022-10-20T08:17:38,826       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-10-20T08:17:38,826     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1673, in print
2022-10-20T08:17:38,827       extend(render(renderable, render_options))
2022-10-20T08:17:38,827     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1305, in render
2022-10-20T08:17:38,827       for render_output in iter_render:
2022-10-20T08:17:38,827     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-10-20T08:17:38,827       for line in lines:
2022-10-20T08:17:38,827     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/segment.py", line 249, in split_lines
2022-10-20T08:17:38,827       for segment in segments:
2022-10-20T08:17:38,827     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1283, in render
2022-10-20T08:17:38,828       renderable = rich_cast(renderable)
2022-10-20T08:17:38,828     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-10-20T08:17:38,828       renderable = cast_method()
2022-10-20T08:17:38,828     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-10-20T08:17:38,828       pip_cmd = get_best_invocation_for_this_pip()
2022-10-20T08:17:38,828     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-10-20T08:17:38,828       if found_executable and os.path.samefile(
2022-10-20T08:17:38,829     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-10-20T08:17:38,829       s2 = os.stat(f2)
2022-10-20T08:17:38,829   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-10-20T08:17:38,829   Call stack:
2022-10-20T08:17:38,831     File "/usr/local/lib/python3.9/dist-packages/pip/__pip-runner__.py", line 36, in <module>
2022-10-20T08:17:38,832       runpy.run_module("pip", run_name="__main__", alter_sys=True)
2022-10-20T08:17:38,832     File "/usr/lib/python3.9/runpy.py", line 210, in run_module
2022-10-20T08:17:38,832       return _run_module_code(code, init_globals, run_name, mod_spec)
2022-10-20T08:17:38,832     File "/usr/lib/python3.9/runpy.py", line 97, in _run_module_code
2022-10-20T08:17:38,832       _run_code(code, mod_globals, init_globals,
2022-10-20T08:17:38,832     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-10-20T08:17:38,832       exec(code, run_globals)
2022-10-20T08:17:38,832     File "/usr/local/lib/python3.9/dist-packages/pip/__main__.py", line 31, in <module>
2022-10-20T08:17:38,833       sys.exit(_main())
2022-10-20T08:17:38,833     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/main.py", line 70, in main
2022-10-20T08:17:38,833       return command.main(cmd_args)
2022-10-20T08:17:38,833     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 101, in main
2022-10-20T08:17:38,833       return self._main(args)
2022-10-20T08:17:38,833     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 223, in _main
2022-10-20T08:17:38,833       self.handle_pip_version_check(options)
2022-10-20T08:17:38,834     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 190, in handle_pip_version_check
2022-10-20T08:17:38,834       pip_self_version_check(session, options)
2022-10-20T08:17:38,834     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 236, in pip_self_version_check
2022-10-20T08:17:38,834       logger.warning("[present-rich] %s", upgrade_prompt)
2022-10-20T08:17:38,834     File "/usr/lib/python3.9/logging/__init__.py", line 1454, in warning
2022-10-20T08:17:38,834       self._log(WARNING, msg, args, **kwargs)
2022-10-20T08:17:38,834     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-10-20T08:17:38,834       self.handle(record)
2022-10-20T08:17:38,835     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-10-20T08:17:38,835       self.callHandlers(record)
2022-10-20T08:17:38,835     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-10-20T08:17:38,835       hdlr.handle(record)
2022-10-20T08:17:38,835     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-10-20T08:17:38,835       self.emit(record)
2022-10-20T08:17:38,835     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 179, in emit
2022-10-20T08:17:38,835       self.handleError(record)
2022-10-20T08:17:38,835   Message: '[present-rich] %s'
2022-10-20T08:17:38,836   Arguments: (UpgradePrompt(old='22.2.2', new='22.3'),)
2022-10-20T08:17:39,053   Installing backend dependencies: finished with status 'done'
2022-10-20T08:17:39,056   Created temporary directory: /tmp/pip-modern-metadata-48d39fs4
2022-10-20T08:17:39,059   Preparing metadata (pyproject.toml): started
2022-10-20T08:17:39,060   Running command Preparing metadata (pyproject.toml)
2022-10-20T08:17:41,114   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-10-20T08:17:41,115     warnings.warn(msg, _BetaConfiguration)
2022-10-20T08:17:41,419   running dist_info
2022-10-20T08:17:41,422   creating /tmp/pip-modern-metadata-48d39fs4/moleculekit.egg-info
2022-10-20T08:17:41,437   writing /tmp/pip-modern-metadata-48d39fs4/moleculekit.egg-info/PKG-INFO
2022-10-20T08:17:41,441   writing dependency_links to /tmp/pip-modern-metadata-48d39fs4/moleculekit.egg-info/dependency_links.txt
2022-10-20T08:17:41,444   writing requirements to /tmp/pip-modern-metadata-48d39fs4/moleculekit.egg-info/requires.txt
2022-10-20T08:17:41,445   writing top-level names to /tmp/pip-modern-metadata-48d39fs4/moleculekit.egg-info/top_level.txt
2022-10-20T08:17:41,447   writing manifest file '/tmp/pip-modern-metadata-48d39fs4/moleculekit.egg-info/SOURCES.txt'
2022-10-20T08:17:41,500   reading manifest file '/tmp/pip-modern-metadata-48d39fs4/moleculekit.egg-info/SOURCES.txt'
2022-10-20T08:17:41,504   reading manifest template 'MANIFEST.in'
2022-10-20T08:17:41,505   warning: no files found matching 'moleculekit/share'
2022-10-20T08:17:41,618   no previously-included directories found matching 'moleculekit/test-data'
2022-10-20T08:17:41,619   no previously-included directories found matching 'moleculekit/tests'
2022-10-20T08:17:41,620   no previously-included directories found matching 'package'
2022-10-20T08:17:41,620   adding license file 'LICENSE'
2022-10-20T08:17:41,626   writing manifest file '/tmp/pip-modern-metadata-48d39fs4/moleculekit.egg-info/SOURCES.txt'
2022-10-20T08:17:41,633   creating '/tmp/pip-modern-metadata-48d39fs4/moleculekit-1.4.8.dist-info'
2022-10-20T08:17:41,699   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-10-20T08:17:41,951   Preparing metadata (pyproject.toml): finished with status 'done'
2022-10-20T08:17:41,962   Source in /tmp/pip-wheel-jg1lhm7r/moleculekit_28465249b6a54369851ad4444a909bfe has version 1.4.8, which satisfies requirement moleculekit==1.4.8 from https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz
2022-10-20T08:17:41,963   Removed moleculekit==1.4.8 from https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz from build tracker '/tmp/pip-build-tracker-4_6s6n6x'
2022-10-20T08:17:41,970 Created temporary directory: /tmp/pip-unpack-j19zga2e
2022-10-20T08:17:41,970 Building wheels for collected packages: moleculekit
2022-10-20T08:17:41,975   Created temporary directory: /tmp/pip-wheel-bwoh1x68
2022-10-20T08:17:41,976   Destination directory: /tmp/pip-wheel-bwoh1x68
2022-10-20T08:17:41,978   Building wheel for moleculekit (pyproject.toml): started
2022-10-20T08:17:41,979   Running command Building wheel for moleculekit (pyproject.toml)
2022-10-20T08:17:43,979   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-10-20T08:17:43,980     warnings.warn(msg, _BetaConfiguration)
2022-10-20T08:17:44,276   running bdist_wheel
2022-10-20T08:17:44,319   running build
2022-10-20T08:17:44,319   running build_py
2022-10-20T08:17:44,328   creating build
2022-10-20T08:17:44,328   creating build/lib.linux-armv7l-cpython-39
2022-10-20T08:17:44,329   creating build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,330   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,333   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,335   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,337   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,339   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,341   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,343   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,346   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,348   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,349   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,351   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,352   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,354   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,356   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,358   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,360   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,364   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,367   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,369   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:44,374   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-20T08:17:44,375   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-20T08:17:44,378   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-20T08:17:44,380   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-20T08:17:44,381   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-20T08:17:44,384   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,385   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,387   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,389   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,391   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,394   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,396   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,399   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,401   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,404   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,406   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,409   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,412   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,414   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,415   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,418   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-20T08:17:44,421   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-10-20T08:17:44,421   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-10-20T08:17:44,426   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-10-20T08:17:44,427   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-10-20T08:17:44,431   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-20T08:17:44,432   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-20T08:17:44,434   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-20T08:17:44,437   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-20T08:17:44,439   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-20T08:17:44,442   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-20T08:17:44,444   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-20T08:17:44,447   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,448   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,450   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,454   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,456   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,458   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,461   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,463   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,465   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,468   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,470   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,472   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,474   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,476   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-20T08:17:44,479   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-10-20T08:17:44,479   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-10-20T08:17:44,482   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-10-20T08:17:44,484   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2022-10-20T08:17:44,485   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2022-10-20T08:17:44,488   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-20T08:17:44,489   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-20T08:17:44,491   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-20T08:17:44,492   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-20T08:17:44,495   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-20T08:17:44,497   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-10-20T08:17:44,498   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-10-20T08:17:44,500   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-10-20T08:17:44,503   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-20T08:17:44,504   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-20T08:17:44,506   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-20T08:17:44,508   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-20T08:17:44,510   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-20T08:17:44,512   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-10-20T08:17:44,513   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-10-20T08:17:44,516   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-10-20T08:17:44,518   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-20T08:17:44,518   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-20T08:17:44,521   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-20T08:17:44,522   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-20T08:17:44,525   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-20T08:17:44,528   running egg_info
2022-10-20T08:17:44,543   writing moleculekit.egg-info/PKG-INFO
2022-10-20T08:17:44,545   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2022-10-20T08:17:44,546   writing requirements to moleculekit.egg-info/requires.txt
2022-10-20T08:17:44,547   writing top-level names to moleculekit.egg-info/top_level.txt
2022-10-20T08:17:44,577   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-10-20T08:17:44,582   reading manifest template 'MANIFEST.in'
2022-10-20T08:17:44,583   warning: no files found matching 'moleculekit/share'
2022-10-20T08:17:44,698   no previously-included directories found matching 'moleculekit/test-data'
2022-10-20T08:17:44,698   no previously-included directories found matching 'moleculekit/tests'
2022-10-20T08:17:44,699   no previously-included directories found matching 'package'
2022-10-20T08:17:44,699   adding license file 'LICENSE'
2022-10-20T08:17:44,706   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-10-20T08:17:44,715   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.atomselect_utils' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,716       !!


2022-10-20T08:17:44,716       ############################
2022-10-20T08:17:44,716       # Package would be ignored #
2022-10-20T08:17:44,716       ############################
2022-10-20T08:17:44,716       Python recognizes 'moleculekit.atomselect_utils' as an importable package,
2022-10-20T08:17:44,717       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,717       'moleculekit.atomselect_utils' has been automatically added to the distribution only
2022-10-20T08:17:44,717       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,717       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,717       Please make sure that 'moleculekit.atomselect_utils' is included as a package by using
2022-10-20T08:17:44,717       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,717       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,718       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,718       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,718       documentation page.


2022-10-20T08:17:44,718   !!

2022-10-20T08:17:44,718     check.warn(importable)
2022-10-20T08:17:44,719   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.bondguesser_utils' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,719       !!


2022-10-20T08:17:44,719       ############################
2022-10-20T08:17:44,719       # Package would be ignored #
2022-10-20T08:17:44,719       ############################
2022-10-20T08:17:44,719       Python recognizes 'moleculekit.bondguesser_utils' as an importable package,
2022-10-20T08:17:44,720       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,720       'moleculekit.bondguesser_utils' has been automatically added to the distribution only
2022-10-20T08:17:44,720       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,720       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,720       Please make sure that 'moleculekit.bondguesser_utils' is included as a package by using
2022-10-20T08:17:44,720       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,720       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,721       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,721       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,721       documentation page.


2022-10-20T08:17:44,721   !!

2022-10-20T08:17:44,721     check.warn(importable)
2022-10-20T08:17:44,722   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.distance_utils' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,722       !!


2022-10-20T08:17:44,722       ############################
2022-10-20T08:17:44,722       # Package would be ignored #
2022-10-20T08:17:44,722       ############################
2022-10-20T08:17:44,722       Python recognizes 'moleculekit.distance_utils' as an importable package,
2022-10-20T08:17:44,722       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,723       'moleculekit.distance_utils' has been automatically added to the distribution only
2022-10-20T08:17:44,723       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,723       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,723       Please make sure that 'moleculekit.distance_utils' is included as a package by using
2022-10-20T08:17:44,723       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,723       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,723       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,724       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,724       documentation page.


2022-10-20T08:17:44,724   !!

2022-10-20T08:17:44,724     check.warn(importable)
2022-10-20T08:17:44,724   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.cationpi' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,725       !!


2022-10-20T08:17:44,725       ############################
2022-10-20T08:17:44,725       # Package would be ignored #
2022-10-20T08:17:44,725       ############################
2022-10-20T08:17:44,726       Python recognizes 'moleculekit.interactions.cationpi' as an importable package,
2022-10-20T08:17:44,726       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,726       'moleculekit.interactions.cationpi' has been automatically added to the distribution only
2022-10-20T08:17:44,726       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,726       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,727       Please make sure that 'moleculekit.interactions.cationpi' is included as a package by using
2022-10-20T08:17:44,727       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,727       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,727       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,727       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,727       documentation page.


2022-10-20T08:17:44,728   !!

2022-10-20T08:17:44,728     check.warn(importable)
2022-10-20T08:17:44,728   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.hbonds' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,728       !!


2022-10-20T08:17:44,729       ############################
2022-10-20T08:17:44,729       # Package would be ignored #
2022-10-20T08:17:44,729       ############################
2022-10-20T08:17:44,729       Python recognizes 'moleculekit.interactions.hbonds' as an importable package,
2022-10-20T08:17:44,729       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,729       'moleculekit.interactions.hbonds' has been automatically added to the distribution only
2022-10-20T08:17:44,729       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,729       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,730       Please make sure that 'moleculekit.interactions.hbonds' is included as a package by using
2022-10-20T08:17:44,730       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,730       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,730       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,730       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,730       documentation page.


2022-10-20T08:17:44,731   !!

2022-10-20T08:17:44,731     check.warn(importable)
2022-10-20T08:17:44,731   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.pipi' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,731       !!


2022-10-20T08:17:44,732       ############################
2022-10-20T08:17:44,732       # Package would be ignored #
2022-10-20T08:17:44,732       ############################
2022-10-20T08:17:44,732       Python recognizes 'moleculekit.interactions.pipi' as an importable package,
2022-10-20T08:17:44,732       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,732       'moleculekit.interactions.pipi' has been automatically added to the distribution only
2022-10-20T08:17:44,732       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,732       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,733       Please make sure that 'moleculekit.interactions.pipi' is included as a package by using
2022-10-20T08:17:44,733       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,733       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,733       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,733       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,733       documentation page.


2022-10-20T08:17:44,736   !!

2022-10-20T08:17:44,737     check.warn(importable)
2022-10-20T08:17:44,737   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.sigmahole' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,737       !!


2022-10-20T08:17:44,738       ############################
2022-10-20T08:17:44,738       # Package would be ignored #
2022-10-20T08:17:44,739       ############################
2022-10-20T08:17:44,740       Python recognizes 'moleculekit.interactions.sigmahole' as an importable package,
2022-10-20T08:17:44,740       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,741       'moleculekit.interactions.sigmahole' has been automatically added to the distribution only
2022-10-20T08:17:44,742       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,742       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,743       Please make sure that 'moleculekit.interactions.sigmahole' is included as a package by using
2022-10-20T08:17:44,744       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,744       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,745       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,745       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,746       documentation page.


2022-10-20T08:17:44,748   !!

2022-10-20T08:17:44,748     check.warn(importable)
2022-10-20T08:17:44,750   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.occupancy_utils' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,750       !!


2022-10-20T08:17:44,751       ############################
2022-10-20T08:17:44,751       # Package would be ignored #
2022-10-20T08:17:44,751       ############################
2022-10-20T08:17:44,751       Python recognizes 'moleculekit.occupancy_utils' as an importable package,
2022-10-20T08:17:44,751       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,752       'moleculekit.occupancy_utils' has been automatically added to the distribution only
2022-10-20T08:17:44,752       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,752       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,752       Please make sure that 'moleculekit.occupancy_utils' is included as a package by using
2022-10-20T08:17:44,752       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,752       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,752       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,753       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,753       documentation page.


2022-10-20T08:17:44,753   !!

2022-10-20T08:17:44,754     check.warn(importable)
2022-10-20T08:17:44,754   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,754       !!


2022-10-20T08:17:44,755       ############################
2022-10-20T08:17:44,755       # Package would be ignored #
2022-10-20T08:17:44,755       ############################
2022-10-20T08:17:44,755       Python recognizes 'moleculekit.tmalign' as an importable package,
2022-10-20T08:17:44,755       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,756       'moleculekit.tmalign' has been automatically added to the distribution only
2022-10-20T08:17:44,756       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,756       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,756       Please make sure that 'moleculekit.tmalign' is included as a package by using
2022-10-20T08:17:44,757       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,757       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,757       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,757       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,757       documentation page.


2022-10-20T08:17:44,758   !!

2022-10-20T08:17:44,758     check.warn(importable)
2022-10-20T08:17:44,758   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.include' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,759       !!


2022-10-20T08:17:44,759       ############################
2022-10-20T08:17:44,759       # Package would be ignored #
2022-10-20T08:17:44,759       ############################
2022-10-20T08:17:44,759       Python recognizes 'moleculekit.tmalign.include' as an importable package,
2022-10-20T08:17:44,759       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,760       'moleculekit.tmalign.include' has been automatically added to the distribution only
2022-10-20T08:17:44,760       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,760       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,760       Please make sure that 'moleculekit.tmalign.include' is included as a package by using
2022-10-20T08:17:44,760       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,760       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,760       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,761       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,761       documentation page.


2022-10-20T08:17:44,761   !!

2022-10-20T08:17:44,761     check.warn(importable)
2022-10-20T08:17:44,761   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.src' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,762       !!


2022-10-20T08:17:44,762       ############################
2022-10-20T08:17:44,762       # Package would be ignored #
2022-10-20T08:17:44,762       ############################
2022-10-20T08:17:44,762       Python recognizes 'moleculekit.tmalign.src' as an importable package,
2022-10-20T08:17:44,762       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,763       'moleculekit.tmalign.src' has been automatically added to the distribution only
2022-10-20T08:17:44,763       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,763       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,763       Please make sure that 'moleculekit.tmalign.src' is included as a package by using
2022-10-20T08:17:44,763       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,763       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,763       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,764       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,764       documentation page.


2022-10-20T08:17:44,764   !!

2022-10-20T08:17:44,764     check.warn(importable)
2022-10-20T08:17:44,766   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.wrapping' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,777       !!


2022-10-20T08:17:44,777       ############################
2022-10-20T08:17:44,778       # Package would be ignored #
2022-10-20T08:17:44,778       ############################
2022-10-20T08:17:44,778       Python recognizes 'moleculekit.wrapping' as an importable package,
2022-10-20T08:17:44,778       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,778       'moleculekit.wrapping' has been automatically added to the distribution only
2022-10-20T08:17:44,778       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,779       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,779       Please make sure that 'moleculekit.wrapping' is included as a package by using
2022-10-20T08:17:44,779       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,779       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,779       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,780       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,780       documentation page.


2022-10-20T08:17:44,780   !!

2022-10-20T08:17:44,781     check.warn(importable)
2022-10-20T08:17:44,781   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,781       !!


2022-10-20T08:17:44,781       ############################
2022-10-20T08:17:44,782       # Package would be ignored #
2022-10-20T08:17:44,782       ############################
2022-10-20T08:17:44,782       Python recognizes 'moleculekit.xtc_utils' as an importable package,
2022-10-20T08:17:44,782       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,782       'moleculekit.xtc_utils' has been automatically added to the distribution only
2022-10-20T08:17:44,782       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,783       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,783       Please make sure that 'moleculekit.xtc_utils' is included as a package by using
2022-10-20T08:17:44,783       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,783       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,783       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,784       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,784       documentation page.


2022-10-20T08:17:44,784   !!

2022-10-20T08:17:44,784     check.warn(importable)
2022-10-20T08:17:44,785   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.include' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,785       !!


2022-10-20T08:17:44,785       ############################
2022-10-20T08:17:44,785       # Package would be ignored #
2022-10-20T08:17:44,785       ############################
2022-10-20T08:17:44,785       Python recognizes 'moleculekit.xtc_utils.include' as an importable package,
2022-10-20T08:17:44,785       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,786       'moleculekit.xtc_utils.include' has been automatically added to the distribution only
2022-10-20T08:17:44,786       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,786       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,786       Please make sure that 'moleculekit.xtc_utils.include' is included as a package by using
2022-10-20T08:17:44,786       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,786       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,787       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,787       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,787       documentation page.


2022-10-20T08:17:44,787   !!

2022-10-20T08:17:44,787     check.warn(importable)
2022-10-20T08:17:44,788   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.src' as data is deprecated, please list it in `packages`.
2022-10-20T08:17:44,788       !!


2022-10-20T08:17:44,788       ############################
2022-10-20T08:17:44,788       # Package would be ignored #
2022-10-20T08:17:44,788       ############################
2022-10-20T08:17:44,788       Python recognizes 'moleculekit.xtc_utils.src' as an importable package,
2022-10-20T08:17:44,789       but it is not listed in the `packages` configuration of setuptools.

2022-10-20T08:17:44,789       'moleculekit.xtc_utils.src' has been automatically added to the distribution only
2022-10-20T08:17:44,789       because it may contain data files, but this behavior is likely to change
2022-10-20T08:17:44,792       in future versions of setuptools (and therefore is considered deprecated).

2022-10-20T08:17:44,793       Please make sure that 'moleculekit.xtc_utils.src' is included as a package by using
2022-10-20T08:17:44,794       the `packages` configuration field or the proper discovery methods
2022-10-20T08:17:44,794       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-20T08:17:44,796       instead of `find_packages(...)`/`find:`).

2022-10-20T08:17:44,796       You can read more about "package discovery" and "data files" on setuptools
2022-10-20T08:17:44,796       documentation page.


2022-10-20T08:17:44,797   !!

2022-10-20T08:17:44,801     check.warn(importable)
2022-10-20T08:17:44,802   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-10-20T08:17:44,802   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-10-20T08:17:44,802   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-10-20T08:17:44,802   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-10-20T08:17:44,802   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-10-20T08:17:44,802   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-10-20T08:17:44,802   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-10-20T08:17:44,802   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-10-20T08:17:44,805   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-10-20T08:17:44,807   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-10-20T08:17:44,808   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-10-20T08:17:44,829   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-10-20T08:17:44,831   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-20T08:17:44,832   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-20T08:17:44,854   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-20T08:17:44,856   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-20T08:17:44,858   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2022-10-20T08:17:44,858   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2022-10-20T08:17:44,861   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-10-20T08:17:44,861   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-10-20T08:17:44,869   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-10-20T08:17:44,869   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-10-20T08:17:44,891   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-10-20T08:17:44,893   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-20T08:17:44,894   copying moleculekit/xtc_utils/xtc.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-20T08:17:44,915   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-20T08:17:44,917   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-20T08:17:44,920   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-10-20T08:17:44,921   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-10-20T08:17:44,924   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-10-20T08:17:44,926   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-10-20T08:17:44,928   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-20T08:17:44,929   copying moleculekit/xtc_utils/src/xdrfile.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-20T08:17:44,934   copying moleculekit/xtc_utils/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-20T08:17:44,936   copying moleculekit/xtc_utils/src/xtc.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-20T08:17:44,939   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-10-20T08:17:44,940   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-10-20T08:17:44,964   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-10-20T08:17:44,967   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-10-20T08:17:44,968   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-10-20T08:17:44,992   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-10-20T08:17:44,994   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-10-20T08:17:44,995   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-10-20T08:17:45,018   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-10-20T08:17:45,020   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-10-20T08:17:45,021   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-10-20T08:17:45,048   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-10-20T08:17:45,060   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2022-10-20T08:17:45,060   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.4.8'
2022-10-20T08:17:45,060   running build_ext
2022-10-20T08:17:45,071   building 'moleculekit.interactions.hbonds' extension
2022-10-20T08:17:45,072   creating build/temp.linux-armv7l-cpython-39
2022-10-20T08:17:45,072   creating build/temp.linux-armv7l-cpython-39/moleculekit
2022-10-20T08:17:45,073   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2022-10-20T08:17:45,073   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-10-20T08:17:45,074   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2022-10-20T08:17:47,361   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:17:47,361                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:17:47,362                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:17:47,362                    from moleculekit/interactions/hbonds/hbonds.cpp:786:
2022-10-20T08:17:47,362   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:17:47,362      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:17:47,362         |  ^~~~~~~
2022-10-20T08:18:06,879   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:18:07,219   building 'moleculekit.interactions.pipi' extension
2022-10-20T08:18:07,220   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-10-20T08:18:07,220   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2022-10-20T08:18:07,484   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:18:07,484                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:18:07,484                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:18:07,484                    from moleculekit/interactions/pipi/pipi.cpp:786:
2022-10-20T08:18:07,484   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:18:07,484      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:18:07,484         |  ^~~~~~~
2022-10-20T08:18:28,691   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:18:29,045   building 'moleculekit.interactions.cationpi' extension
2022-10-20T08:18:29,046   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-10-20T08:18:29,046   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2022-10-20T08:18:29,343   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:18:29,343                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:18:29,343                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:18:29,343                    from moleculekit/interactions/cationpi/cationpi.cpp:786:
2022-10-20T08:18:29,344   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:18:29,344      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:18:29,344         |  ^~~~~~~
2022-10-20T08:18:51,027   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:18:51,417   building 'moleculekit.interactions.sigmahole' extension
2022-10-20T08:18:51,418   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-10-20T08:18:51,419   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2022-10-20T08:18:51,683   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:18:51,683                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:18:51,683                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:18:51,683                    from moleculekit/interactions/sigmahole/sigmahole.cpp:786:
2022-10-20T08:18:51,683   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:18:51,683      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:18:51,683         |  ^~~~~~~
2022-10-20T08:19:12,515   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:19:12,861   building 'moleculekit.wrapping' extension
2022-10-20T08:19:12,861   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2022-10-20T08:19:12,862   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2022-10-20T08:19:13,130   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:19:13,130                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:19:13,130                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:19:13,131                    from moleculekit/wrapping/wrapping.cpp:786:
2022-10-20T08:19:13,131   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:19:13,131      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:19:13,131         |  ^~~~~~~
2022-10-20T08:19:30,687   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:19:30,917   building 'moleculekit.bondguesser_utils' extension
2022-10-20T08:19:30,917   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-10-20T08:19:30,918   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2022-10-20T08:19:31,188   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:19:31,188                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:19:31,189                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:19:31,189                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:786:
2022-10-20T08:19:31,189   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:19:31,189      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:19:31,189         |  ^~~~~~~
2022-10-20T08:19:32,390   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2022-10-20T08:19:32,390   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2954:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-10-20T08:19:32,391    2954 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2022-10-20T08:19:32,391         |                       ~~~~~~~~~~^~~~~~~~~~~
2022-10-20T08:19:32,391   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2966:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-10-20T08:19:32,391    2966 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2022-10-20T08:19:32,391         |                         ~~~~~~~~~~^~~~~~~~~~~
2022-10-20T08:19:32,391   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2978:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-10-20T08:19:32,392    2978 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2022-10-20T08:19:32,392         |                           ~~~~~~~~~~^~~~~~~~~~~
2022-10-20T08:19:32,392   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3017:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,392    3017 |         __pyx_t_12 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-20T08:19:32,392         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,392   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3056:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,392    3056 |         __pyx_t_12 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-20T08:19:32,393         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,393   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3095:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,393    3095 |         __pyx_t_12 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-20T08:19:32,393         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,393   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3134:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,393    3134 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-20T08:19:32,393         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,394   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3140:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,394    3140 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-20T08:19:32,394         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,394   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3181:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,394    3181 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-20T08:19:32,394         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,394   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3187:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,395    3187 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-20T08:19:32,395         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,395   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3228:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,395    3228 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-20T08:19:32,395         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,395   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3234:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,395    3234 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-20T08:19:32,395         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,396   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3275:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,396    3275 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-20T08:19:32,396         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,396   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3328:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,396    3328 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-20T08:19:32,397         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,397   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3375:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,397    3375 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-20T08:19:32,397         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,397   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3416:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,397    3416 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-20T08:19:32,397         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,398   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3422:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,398    3422 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-20T08:19:32,398         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,398   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3428:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,398    3428 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-20T08:19:32,398         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,398   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3475:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,399    3475 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-20T08:19:32,399         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,399   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3481:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,399    3481 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-20T08:19:32,399         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,399   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3522:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,399    3522 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-20T08:19:32,400         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,400   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3534:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,400    3534 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-20T08:19:32,400         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,400   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3587:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-20T08:19:32,401    3587 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-20T08:19:32,401         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,427   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2022-10-20T08:19:32,427   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4136:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-20T08:19:32,427    4136 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_n_boxes) != 0);
2022-10-20T08:19:32,428         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2022-10-20T08:19:32,428   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4173:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-20T08:19:32,428    4173 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_boxidx) != 0);
2022-10-20T08:19:32,428         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2022-10-20T08:19:49,112   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:19:49,440   building 'moleculekit.atomselect_utils' extension
2022-10-20T08:19:49,441   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-10-20T08:19:49,441   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2022-10-20T08:19:49,739   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:19:49,739                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:19:49,740                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:19:49,740                    from moleculekit/atomselect_utils/atomselect_utils.cpp:786:
2022-10-20T08:19:49,740   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:19:49,740      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:19:49,740         |  ^~~~~~~
2022-10-20T08:19:51,084   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2022-10-20T08:19:51,084   moleculekit/atomselect_utils/atomselect_utils.cpp:5406:162: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-20T08:19:51,084    5406 |       __pyx_t_3 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum) != 0);
2022-10-20T08:19:51,084         |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2022-10-20T08:19:51,089   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2022-10-20T08:19:51,089   moleculekit/atomselect_utils/atomselect_utils.cpp:5660:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-20T08:19:51,089    5660 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2022-10-20T08:19:51,090         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-20T08:19:51,094   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2022-10-20T08:19:51,094   moleculekit/atomselect_utils/atomselect_utils.cpp:5926:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-20T08:19:51,094    5926 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2022-10-20T08:19:51,095         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-20T08:20:14,090   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:20:14,446   building 'moleculekit.distance_utils' extension
2022-10-20T08:20:14,446   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-10-20T08:20:14,447   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2022-10-20T08:20:14,718   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:20:14,718                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:20:14,718                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:20:14,719                    from moleculekit/distance_utils/distance_utils.cpp:786:
2022-10-20T08:20:14,719   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:20:14,719      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:20:14,719         |  ^~~~~~~
2022-10-20T08:20:32,509   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:20:32,732   building 'moleculekit.occupancy_utils' extension
2022-10-20T08:20:32,732   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-10-20T08:20:32,733   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2022-10-20T08:20:32,999   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:20:33,000                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:20:33,000                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:20:33,000                    from moleculekit/occupancy_utils/occupancy_utils.cpp:786:
2022-10-20T08:20:33,000   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:20:33,000      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:20:33,000         |  ^~~~~~~
2022-10-20T08:20:49,765   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:20:49,999   building 'moleculekit.xtc' extension
2022-10-20T08:20:50,000   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-20T08:20:50,001   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-20T08:20:50,002   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-10-20T08:20:50,160   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2022-10-20T08:20:50,160   moleculekit/xtc_utils/src/xdrfile.c:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2022-10-20T08:20:50,161     763 |  int errval=1;
2022-10-20T08:20:50,161         |      ^~~~~~
2022-10-20T08:20:50,161   moleculekit/xtc_utils/src/xdrfile.c:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-10-20T08:20:50,161     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-10-20T08:20:50,161         |                         ^~~~~~
2022-10-20T08:20:50,161   moleculekit/xtc_utils/src/xdrfile.c:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-10-20T08:20:50,161     756 |  int smallidx,  minidx, maxidx;
2022-10-20T08:20:50,162         |                 ^~~~~~
2022-10-20T08:20:50,168   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2022-10-20T08:20:50,168   moleculekit/xtc_utils/src/xdrfile.c:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-10-20T08:20:50,169    1001 |  int errval;
2022-10-20T08:20:50,169         |      ^~~~~~
2022-10-20T08:20:50,173   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2022-10-20T08:20:50,173   moleculekit/xtc_utils/src/xdrfile.c:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2022-10-20T08:20:50,174    1297 |  int errval=1;
2022-10-20T08:20:50,174         |      ^~~~~~
2022-10-20T08:20:50,174   moleculekit/xtc_utils/src/xdrfile.c:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-10-20T08:20:50,174    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-10-20T08:20:50,174         |                         ^~~~~~
2022-10-20T08:20:50,175   moleculekit/xtc_utils/src/xdrfile.c:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-10-20T08:20:50,175    1289 |  int smallidx,  maxidx, minidx;
2022-10-20T08:20:50,175         |                         ^~~~~~
2022-10-20T08:20:50,184   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2022-10-20T08:20:50,185   moleculekit/xtc_utils/src/xdrfile.c:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-10-20T08:20:50,185    1504 |  int errval=1;
2022-10-20T08:20:50,185         |      ^~~~~~
2022-10-20T08:20:52,372   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-10-20T08:20:52,604   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-10-20T08:20:52,734   moleculekit/xtc_utils/src/xtc.c: In function ‘xtc_read_new’:
2022-10-20T08:20:52,734   moleculekit/xtc_utils/src/xtc.c:201:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2022-10-20T08:20:52,735     201 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2022-10-20T08:20:52,735         |      ^~~
2022-10-20T08:20:52,738   moleculekit/xtc_utils/src/xtc.c: In function ‘xtc_write’:
2022-10-20T08:20:52,738   moleculekit/xtc_utils/src/xtc.c:416:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2022-10-20T08:20:52,739     416 |  int nf3 = nframes * 3;
2022-10-20T08:20:52,739         |      ^~~
2022-10-20T08:20:52,741   moleculekit/xtc_utils/src/xtc.c: In function ‘xtc_read_frame’:
2022-10-20T08:20:52,741   moleculekit/xtc_utils/src/xtc.c:495:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2022-10-20T08:20:52,742     495 |  int writing_index = 0;
2022-10-20T08:20:52,742         |      ^~~~~~~~~~~~~
2022-10-20T08:20:52,742   moleculekit/xtc_utils/src/xtc.c:494:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2022-10-20T08:20:52,743     494 |  int reading_index = 0;
2022-10-20T08:20:52,743         |      ^~~~~~~~~~~~~
2022-10-20T08:20:53,123   moleculekit/xtc_utils/src/xtc.c:539:12: warning: ‘garbage_natoms’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-20T08:20:53,124     539 |   frames = xtc_read(filename, garbage_natoms, &traj_nframes, &dt, &dstep);
2022-10-20T08:20:53,124         |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-20T08:20:53,273   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-10-20T08:20:53,614   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-20T08:20:53,614                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-20T08:20:53,614                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-20T08:20:53,614                    from moleculekit/xtc_utils/xtc.c:778:
2022-10-20T08:20:53,614   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-20T08:20:53,614      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-20T08:20:53,615         |  ^~~~~~~
2022-10-20T08:21:07,575   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:21:07,761   building 'moleculekit.tmalign' extension
2022-10-20T08:21:07,762   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-20T08:21:07,763   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-10-20T08:21:07,764   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2022-10-20T08:21:37,235   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2022-10-20T08:21:49,506   In file included from /usr/include/c++/10/vector:72,
2022-10-20T08:21:49,507                    from moleculekit/tmalign/tmalign_util.cpp:802:
2022-10-20T08:21:49,507   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2022-10-20T08:21:49,507   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-10-20T08:21:49,507     426 |       vector<_Tp, _Alloc>::
2022-10-20T08:21:49,507         |       ^~~~~~~~~~~~~~~~~~~
2022-10-20T08:21:49,806   In file included from /usr/include/c++/10/vector:67,
2022-10-20T08:21:49,806                    from moleculekit/tmalign/tmalign_util.cpp:802:
2022-10-20T08:21:49,806   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject*, PyObject*)’:
2022-10-20T08:21:49,807   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-10-20T08:21:49,807    1198 |    _M_realloc_insert(end(), __x);
2022-10-20T08:21:49,807         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-20T08:21:49,807   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-10-20T08:21:49,807    1198 |    _M_realloc_insert(end(), __x);
2022-10-20T08:21:49,807         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-20T08:21:51,645   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2022-10-20T08:21:52,151   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2022-10-20T08:21:52,151   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.4.8'
2022-10-20T08:21:52,151   installing to build/bdist.linux-armv7l/wheel
2022-10-20T08:21:52,152   running install
2022-10-20T08:21:52,178   running install_lib
2022-10-20T08:21:52,193   creating build/bdist.linux-armv7l
2022-10-20T08:21:52,194   creating build/bdist.linux-armv7l/wheel
2022-10-20T08:21:52,196   creating build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,198   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-20T08:21:52,199   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-20T08:21:52,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-20T08:21:52,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-20T08:21:52,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-20T08:21:52,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,279   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-10-20T08:21:52,280   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-10-20T08:21:52,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-10-20T08:21:52,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-10-20T08:21:52,286   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-10-20T08:21:52,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-10-20T08:21:52,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-10-20T08:21:52,292   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-10-20T08:21:52,293   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-10-20T08:21:52,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-10-20T08:21:52,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-10-20T08:21:52,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-10-20T08:21:52,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,344   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,347   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,358   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-20T08:21:52,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,392   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-10-20T08:21:52,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-10-20T08:21:52,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-10-20T08:21:52,421   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-10-20T08:21:52,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-10-20T08:21:52,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-10-20T08:21:52,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,459   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,484   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-10-20T08:21:52,485   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-10-20T08:21:52,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-10-20T08:21:52,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-10-20T08:21:52,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,502   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,508   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,535   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,540   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-20T08:21:52,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-20T08:21:52,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-20T08:21:52,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-20T08:21:52,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-20T08:21:52,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-20T08:21:52,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-20T08:21:52,558   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-20T08:21:52,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-20T08:21:52,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-20T08:21:52,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-20T08:21:52,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-20T08:21:52,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,573   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-10-20T08:21:52,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-10-20T08:21:52,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-10-20T08:21:52,599   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,609   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-10-20T08:21:52,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-10-20T08:21:52,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-10-20T08:21:52,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,626   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-20T08:21:52,638   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-10-20T08:21:52,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-10-20T08:21:52,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-10-20T08:21:52,663   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-20T08:21:52,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-20T08:21:52,701   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-10-20T08:21:52,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-10-20T08:21:52,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-10-20T08:21:52,725   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-20T08:21:52,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-20T08:21:52,793   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-10-20T08:21:52,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-10-20T08:21:52,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-10-20T08:21:52,819   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-10-20T08:21:52,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-10-20T08:21:52,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-10-20T08:21:52,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-20T08:21:52,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-20T08:21:52,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-20T08:21:52,876   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-10-20T08:21:52,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-10-20T08:21:52,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-10-20T08:21:52,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:52,972   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2022-10-20T08:21:52,974   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-20T08:21:52,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-20T08:21:52,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-20T08:21:52,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-20T08:21:52,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-20T08:21:52,984   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-10-20T08:21:52,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-10-20T08:21:52,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-10-20T08:21:52,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2022-10-20T08:21:52,990   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-20T08:21:52,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-20T08:21:52,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-20T08:21:52,995   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-20T08:21:52,997   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-20T08:21:53,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:53,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:53,025   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-10-20T08:21:53,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-10-20T08:21:53,048   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2022-10-20T08:21:53,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2022-10-20T08:21:53,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-10-20T08:21:53,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-10-20T08:21:53,059   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2022-10-20T08:21:53,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2022-10-20T08:21:53,062   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-10-20T08:21:53,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-10-20T08:21:53,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-10-20T08:21:53,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-20T08:21:53,090   running install_egg_info
2022-10-20T08:21:53,105   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.4.8-py3.9.egg-info
2022-10-20T08:21:53,119   running install_scripts
2022-10-20T08:21:53,162   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-10-20T08:21:53,185   creating build/bdist.linux-armv7l/wheel/moleculekit-1.4.8.dist-info/WHEEL
2022-10-20T08:21:53,188   creating '/tmp/pip-wheel-bwoh1x68/tmpjki9vlah/moleculekit-1.4.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-10-20T08:21:53,191   adding 'moleculekit/__init__.py'
2022-10-20T08:21:53,192   adding 'moleculekit/_version.py'
2022-10-20T08:21:53,194   adding 'moleculekit/align.py'
2022-10-20T08:21:53,492   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:53,504   adding 'moleculekit/bondguesser.py'
2022-10-20T08:21:53,722   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:53,730   adding 'moleculekit/config.py'
2022-10-20T08:21:53,731   adding 'moleculekit/dihedral.py'
2022-10-20T08:21:53,940   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:53,948   adding 'moleculekit/home.py'
2022-10-20T08:21:53,961   adding 'moleculekit/molecule.py'
2022-10-20T08:21:54,162   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:54,170   adding 'moleculekit/periodictable.py'
2022-10-20T08:21:54,171   adding 'moleculekit/pymolgraphics.py'
2022-10-20T08:21:54,173   adding 'moleculekit/rcsb.py'
2022-10-20T08:21:54,174   adding 'moleculekit/rdkitintegration.py'
2022-10-20T08:21:54,186   adding 'moleculekit/readers.py'
2022-10-20T08:21:54,754   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:54,777   adding 'moleculekit/util.py'
2022-10-20T08:21:54,779   adding 'moleculekit/version.py'
2022-10-20T08:21:54,780   adding 'moleculekit/viewer.py'
2022-10-20T08:21:54,782   adding 'moleculekit/vmdgraphics.py'
2022-10-20T08:21:54,784   adding 'moleculekit/vmdviewer.py'
2022-10-20T08:21:54,996   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:55,007   adding 'moleculekit/writers.py'
2022-10-20T08:21:55,228   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:55,236   adding 'moleculekit/atomselect/__init__.py'
2022-10-20T08:21:55,237   adding 'moleculekit/atomselect/analyze.py'
2022-10-20T08:21:55,240   adding 'moleculekit/atomselect/atomselect.py'
2022-10-20T08:21:55,241   adding 'moleculekit/atomselect/languageparser.py'
2022-10-20T08:21:55,326   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2022-10-20T08:21:55,336   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2022-10-20T08:21:55,409   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2022-10-20T08:21:55,416   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2022-10-20T08:21:55,487   adding 'moleculekit/distance_utils/distance_utils.cpp'
2022-10-20T08:21:55,494   adding 'moleculekit/distance_utils/distance_utils.pyx'
2022-10-20T08:21:55,496   adding 'moleculekit/interactions/__init__.py'
2022-10-20T08:21:55,749   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:55,986   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:55,996   adding 'moleculekit/interactions/interactions.py'
2022-10-20T08:21:56,253   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:56,511   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2022-10-20T08:21:56,592   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2022-10-20T08:21:56,600   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2022-10-20T08:21:56,672   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2022-10-20T08:21:56,679   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2022-10-20T08:21:56,752   adding 'moleculekit/interactions/pipi/pipi.cpp'
2022-10-20T08:21:56,760   adding 'moleculekit/interactions/pipi/pipi.pyx'
2022-10-20T08:21:56,832   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2022-10-20T08:21:56,840   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2022-10-20T08:21:56,908   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2022-10-20T08:21:56,915   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2022-10-20T08:21:56,916   adding 'moleculekit/pdbx/__init__.py'
2022-10-20T08:21:56,920   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2022-10-20T08:21:56,923   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2022-10-20T08:21:56,925   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2022-10-20T08:21:56,926   adding 'moleculekit/pdbx/reader/__init__.py'
2022-10-20T08:21:56,928   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2022-10-20T08:21:56,930   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2022-10-20T08:21:56,931   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2022-10-20T08:21:56,932   adding 'moleculekit/pdbx/tests/__init__.py'
2022-10-20T08:21:56,934   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2022-10-20T08:21:56,935   adding 'moleculekit/pdbx/writer/__init__.py'
2022-10-20T08:21:56,937   adding 'moleculekit/ply/__init__.py'
2022-10-20T08:21:56,941   adding 'moleculekit/ply/lex.py'
2022-10-20T08:21:56,953   adding 'moleculekit/ply/yacc.py'
2022-10-20T08:21:56,955   adding 'moleculekit/projections/__init__.py'
2022-10-20T08:21:56,957   adding 'moleculekit/projections/metriccoordinate.py'
2022-10-20T08:21:56,960   adding 'moleculekit/projections/metricdihedral.py'
2022-10-20T08:21:56,964   adding 'moleculekit/projections/metricdistance.py'
2022-10-20T08:21:56,966   adding 'moleculekit/projections/metricfluctuation.py'
2022-10-20T08:21:56,968   adding 'moleculekit/projections/metricgyration.py'
2022-10-20T08:21:56,971   adding 'moleculekit/projections/metricplumed2.py'
2022-10-20T08:21:56,973   adding 'moleculekit/projections/metricrmsd.py'
2022-10-20T08:21:56,975   adding 'moleculekit/projections/metricsasa.py'
2022-10-20T08:21:56,977   adding 'moleculekit/projections/metricsecondarystructure.py'
2022-10-20T08:21:56,979   adding 'moleculekit/projections/metricshell.py'
2022-10-20T08:21:56,980   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2022-10-20T08:21:56,982   adding 'moleculekit/projections/metrictmscore.py'
2022-10-20T08:21:56,983   adding 'moleculekit/projections/projection.py'
2022-10-20T08:21:56,984   adding 'moleculekit/projections/util.py'
2022-10-20T08:21:56,986   adding 'moleculekit/smallmol/__init__.py'
2022-10-20T08:21:56,991   adding 'moleculekit/smallmol/smallmol.py'
2022-10-20T08:21:56,994   adding 'moleculekit/smallmol/smallmollib.py'
2022-10-20T08:21:56,996   adding 'moleculekit/smallmol/test_smallmol.py'
2022-10-20T08:21:56,997   adding 'moleculekit/smallmol/test_smallmollib.py'
2022-10-20T08:21:56,999   adding 'moleculekit/smallmol/util.py'
2022-10-20T08:21:57,001   adding 'moleculekit/smallmol/tools/__init__.py'
2022-10-20T08:21:57,003   adding 'moleculekit/smallmol/tools/clustering.py'
2022-10-20T08:21:57,004   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2022-10-20T08:21:57,006   adding 'moleculekit/smallmol/tools/test_tools.py'
2022-10-20T08:21:57,076   adding 'moleculekit/tmalign/tmalign_util.cpp'
2022-10-20T08:21:57,083   adding 'moleculekit/tmalign/tmalign_util.pyx'
2022-10-20T08:21:57,084   adding 'moleculekit/tmalign/tmalignlib.pxd'
2022-10-20T08:21:57,086   adding 'moleculekit/tmalign/include/TMAlign.h'
2022-10-20T08:21:57,103   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2022-10-20T08:21:57,107   adding 'moleculekit/tools/__init__.py'
2022-10-20T08:21:57,109   adding 'moleculekit/tools/atomtyper.py'
2022-10-20T08:21:57,111   adding 'moleculekit/tools/autosegment.py'
2022-10-20T08:21:57,113   adding 'moleculekit/tools/crystalpacking.py'
2022-10-20T08:21:57,115   adding 'moleculekit/tools/detect.py'
2022-10-20T08:21:57,117   adding 'moleculekit/tools/docking.py'
2022-10-20T08:21:57,119   adding 'moleculekit/tools/graphalignment.py'
2022-10-20T08:21:57,120   adding 'moleculekit/tools/hhblitsprofile.py'
2022-10-20T08:21:57,121   adding 'moleculekit/tools/moleculechecks.py'
2022-10-20T08:21:57,128   adding 'moleculekit/tools/preparation.py'
2022-10-20T08:21:57,130   adding 'moleculekit/tools/preparation_customres.py'
2022-10-20T08:21:57,132   adding 'moleculekit/tools/sequencestructuralalignment.py'
2022-10-20T08:21:57,135   adding 'moleculekit/tools/voxeldescriptors.py'
2022-10-20T08:21:57,137   adding 'moleculekit/tools/obabel_tools/__init__.py'
2022-10-20T08:21:57,138   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2022-10-20T08:21:57,207   adding 'moleculekit/wrapping/wrapping.cpp'
2022-10-20T08:21:57,214   adding 'moleculekit/wrapping/wrapping.pyx'
2022-10-20T08:21:57,287   adding 'moleculekit/xtc_utils/xtc.c'
2022-10-20T08:21:57,295   adding 'moleculekit/xtc_utils/xtc.pyx'
2022-10-20T08:21:57,296   adding 'moleculekit/xtc_utils/xtclib.pxd'
2022-10-20T08:21:57,300   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2022-10-20T08:21:57,301   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2022-10-20T08:21:57,302   adding 'moleculekit/xtc_utils/include/xtc.h'
2022-10-20T08:21:57,309   adding 'moleculekit/xtc_utils/src/xdrfile.c'
2022-10-20T08:21:57,311   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.c'
2022-10-20T08:21:57,313   adding 'moleculekit/xtc_utils/src/xtc.c'
2022-10-20T08:21:57,315   adding 'moleculekit-1.4.8.dist-info/LICENSE'
2022-10-20T08:21:57,317   adding 'moleculekit-1.4.8.dist-info/METADATA'
2022-10-20T08:21:57,318   adding 'moleculekit-1.4.8.dist-info/WHEEL'
2022-10-20T08:21:57,319   adding 'moleculekit-1.4.8.dist-info/top_level.txt'
2022-10-20T08:21:57,321   adding 'moleculekit-1.4.8.dist-info/RECORD'
2022-10-20T08:21:57,420   removing build/bdist.linux-armv7l/wheel
2022-10-20T08:21:57,741   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2022-10-20T08:21:57,912   Created wheel for moleculekit: filename=moleculekit-1.4.8-cp39-cp39-linux_armv7l.whl size=7082893 sha256=04b80834389619f511934db60c45649252288c6a8320edfb0b3e7b2bda32ee5b
2022-10-20T08:21:57,913   Stored in directory: /tmp/pip-ephem-wheel-cache-_us5tdaz/wheels/14/32/57/296562d10a62477cb56aff56a967470c78ee10205391f42fc0
2022-10-20T08:21:57,932 Successfully built moleculekit
2022-10-20T08:21:58,162 Removed build tracker: '/tmp/pip-build-tracker-4_6s6n6x'