2022-10-21T07:37:45,485 Created temporary directory: /tmp/pip-ephem-wheel-cache-pixlj8zk
2022-10-21T07:37:45,488 Created temporary directory: /tmp/pip-build-tracker-4gjg_3_t
2022-10-21T07:37:45,488 Initialized build tracking at /tmp/pip-build-tracker-4gjg_3_t
2022-10-21T07:37:45,488 Created build tracker: /tmp/pip-build-tracker-4gjg_3_t
2022-10-21T07:37:45,489 Entered build tracker: /tmp/pip-build-tracker-4gjg_3_t
2022-10-21T07:37:45,489 Created temporary directory: /tmp/pip-wheel-pnfc4vk_
2022-10-21T07:37:45,522 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-21T07:37:45,526 2 location(s) to search for versions of moleculekit:
2022-10-21T07:37:45,526 * https://pypi.org/simple/moleculekit/
2022-10-21T07:37:45,526 * https://www.piwheels.org/simple/moleculekit/
2022-10-21T07:37:45,527 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2022-10-21T07:37:45,527 Getting page https://pypi.org/simple/moleculekit/
2022-10-21T07:37:45,529 Found index url https://pypi.org/simple
2022-10-21T07:37:45,584 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2022-10-21T07:37:45,615   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,615   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2022-10-21T07:37:45,616   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,616   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2022-10-21T07:37:45,616   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,617   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2022-10-21T07:37:45,617   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,617   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2022-10-21T07:37:45,617   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,618   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2022-10-21T07:37:45,618   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,618   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2022-10-21T07:37:45,618   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,619   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2022-10-21T07:37:45,619   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,619   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2022-10-21T07:37:45,619   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,620   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2022-10-21T07:37:45,620   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,620   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2022-10-21T07:37:45,620   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,621   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2022-10-21T07:37:45,621   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,621   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2022-10-21T07:37:45,621   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,621   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2022-10-21T07:37:45,622   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,622   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2022-10-21T07:37:45,622   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,622   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2022-10-21T07:37:45,623   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,623   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2022-10-21T07:37:45,623   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,623   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2022-10-21T07:37:45,624   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,624   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2022-10-21T07:37:45,624   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,624   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2022-10-21T07:37:45,625   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,625   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2022-10-21T07:37:45,625   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,625   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2022-10-21T07:37:45,626   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,626   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2022-10-21T07:37:45,626   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,626   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2022-10-21T07:37:45,627   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,627   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2022-10-21T07:37:45,627   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,627   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2022-10-21T07:37:45,628   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,628   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2022-10-21T07:37:45,628   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,628   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2022-10-21T07:37:45,629   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,629   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2022-10-21T07:37:45,629   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,629   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2022-10-21T07:37:45,630   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,630   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2022-10-21T07:37:45,630   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,630   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2022-10-21T07:37:45,631   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-10-21T07:37:45,631   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2022-10-21T07:37:45,631   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-10-21T07:37:45,655   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
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2022-10-21T07:37:45,656   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2022-10-21T07:37:45,656   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2022-10-21T07:37:45,657   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2022-10-21T07:37:45,657   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2022-10-21T07:37:45,657   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2022-10-21T07:37:45,658   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2022-10-21T07:37:45,658   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2022-10-21T07:37:45,658   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2022-10-21T07:37:45,658   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2022-10-21T07:37:45,659   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2022-10-21T07:37:45,659   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2022-10-21T07:37:45,659   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2022-10-21T07:37:45,659   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2022-10-21T07:37:45,660   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2022-10-21T07:37:45,660   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2022-10-21T07:37:45,660   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2022-10-21T07:37:45,661   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2022-10-21T07:37:45,661   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2022-10-21T07:37:45,661   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2022-10-21T07:37:45,661   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2022-10-21T07:37:45,662   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2022-10-21T07:37:45,662   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2022-10-21T07:37:45,662   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2022-10-21T07:37:45,663   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2022-10-21T07:37:45,663   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2022-10-21T07:37:45,664   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2022-10-21T07:37:45,665   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2022-10-21T07:37:45,665   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2022-10-21T07:37:45,666 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2022-10-21T07:37:45,666 Getting page https://www.piwheels.org/simple/moleculekit/
2022-10-21T07:37:45,667 Found index url https://www.piwheels.org/simple
2022-10-21T07:37:45,835 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2022-10-21T07:37:45,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.8-cp39-cp39-linux_armv7l.whl#sha256=04b80834389619f511934db60c45649252288c6a8320edfb0b3e7b2bda32ee5b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-10-21T07:37:45,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.8-cp39-cp39-linux_armv6l.whl#sha256=04b80834389619f511934db60c45649252288c6a8320edfb0b3e7b2bda32ee5b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-10-21T07:37:45,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv6l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv6l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,885   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,886   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,887   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
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2022-10-21T07:37:45,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
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2022-10-21T07:37:45,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
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2022-10-21T07:37:45,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
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2022-10-21T07:37:45,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
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2022-10-21T07:37:45,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,902   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,902   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,902   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,902   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,902   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,903   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,903   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,903   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2022-10-21T07:37:45,903 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2022-10-21T07:37:45,904 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2022-10-21T07:37:45,940 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2022-10-21T07:37:45,958 Collecting moleculekit==1.5.0
2022-10-21T07:37:45,960   Created temporary directory: /tmp/pip-unpack-1ntd_0io
2022-10-21T07:37:46,678   Downloading moleculekit-1.5.0.tar.gz (1.7 MB)
2022-10-21T07:37:47,953   Added moleculekit==1.5.0 from https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-4gjg_3_t'
2022-10-21T07:37:47,961   Created temporary directory: /tmp/pip-build-env-51rwbgq2
2022-10-21T07:37:47,971   Installing build dependencies: started
2022-10-21T07:37:47,972   Running command pip subprocess to install build dependencies
2022-10-21T07:37:49,213   Using pip 22.2.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-10-21T07:37:49,668   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-21T07:37:51,338   Collecting setuptools
2022-10-21T07:37:51,464     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB)
2022-10-21T07:37:52,909   Collecting numpy>=1.18.5
2022-10-21T07:37:54,223     Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.4-cp39-cp39-linux_armv7l.whl (12.4 MB)
2022-10-21T07:37:55,926   Collecting Cython>=0.29.21
2022-10-21T07:37:56,444     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-10-21T07:37:56,702   Collecting toml
2022-10-21T07:37:56,719     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2022-10-21T07:37:57,024   Collecting versioneer[toml]==0.26
2022-10-21T07:37:57,050     Using cached versioneer-0.26-py3-none-any.whl (44 kB)
2022-10-21T07:37:57,179   Collecting tomli
2022-10-21T07:37:57,195     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-10-21T07:37:59,255   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2022-10-21T07:37:59,297     Creating /tmp/pip-build-env-51rwbgq2/overlay/bin
2022-10-21T07:37:59,299     changing mode of /tmp/pip-build-env-51rwbgq2/overlay/bin/versioneer to 755
2022-10-21T07:38:10,691     changing mode of /tmp/pip-build-env-51rwbgq2/overlay/bin/f2py to 755
2022-10-21T07:38:10,693     changing mode of /tmp/pip-build-env-51rwbgq2/overlay/bin/f2py3 to 755
2022-10-21T07:38:10,697     changing mode of /tmp/pip-build-env-51rwbgq2/overlay/bin/f2py3.9 to 755
2022-10-21T07:38:13,592     changing mode of /tmp/pip-build-env-51rwbgq2/overlay/bin/cygdb to 755
2022-10-21T07:38:13,594     changing mode of /tmp/pip-build-env-51rwbgq2/overlay/bin/cython to 755
2022-10-21T07:38:13,597     changing mode of /tmp/pip-build-env-51rwbgq2/overlay/bin/cythonize to 755
2022-10-21T07:38:13,627   Successfully installed Cython-0.29.32 numpy-1.23.4 setuptools-65.5.0 toml-0.10.2 tomli-2.0.1 versioneer-0.26
2022-10-21T07:38:13,670   --- Logging error ---
2022-10-21T07:38:13,676   Traceback (most recent call last):
2022-10-21T07:38:13,677     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 177, in emit
2022-10-21T07:38:13,677       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-10-21T07:38:13,677     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1673, in print
2022-10-21T07:38:13,677       extend(render(renderable, render_options))
2022-10-21T07:38:13,677     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1305, in render
2022-10-21T07:38:13,677       for render_output in iter_render:
2022-10-21T07:38:13,678     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-10-21T07:38:13,678       for line in lines:
2022-10-21T07:38:13,678     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/segment.py", line 249, in split_lines
2022-10-21T07:38:13,678       for segment in segments:
2022-10-21T07:38:13,678     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1283, in render
2022-10-21T07:38:13,678       renderable = rich_cast(renderable)
2022-10-21T07:38:13,678     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-10-21T07:38:13,678       renderable = cast_method()
2022-10-21T07:38:13,679     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-10-21T07:38:13,679       pip_cmd = get_best_invocation_for_this_pip()
2022-10-21T07:38:13,679     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-10-21T07:38:13,679       if found_executable and os.path.samefile(
2022-10-21T07:38:13,679     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-10-21T07:38:13,679       s2 = os.stat(f2)
2022-10-21T07:38:13,680   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-10-21T07:38:13,680   Call stack:
2022-10-21T07:38:13,685     File "/usr/local/lib/python3.9/dist-packages/pip/__pip-runner__.py", line 36, in <module>
2022-10-21T07:38:13,686       runpy.run_module("pip", run_name="__main__", alter_sys=True)
2022-10-21T07:38:13,686     File "/usr/lib/python3.9/runpy.py", line 210, in run_module
2022-10-21T07:38:13,686       return _run_module_code(code, init_globals, run_name, mod_spec)
2022-10-21T07:38:13,686     File "/usr/lib/python3.9/runpy.py", line 97, in _run_module_code
2022-10-21T07:38:13,686       _run_code(code, mod_globals, init_globals,
2022-10-21T07:38:13,687     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-10-21T07:38:13,687       exec(code, run_globals)
2022-10-21T07:38:13,687     File "/usr/local/lib/python3.9/dist-packages/pip/__main__.py", line 31, in <module>
2022-10-21T07:38:13,687       sys.exit(_main())
2022-10-21T07:38:13,687     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/main.py", line 70, in main
2022-10-21T07:38:13,687       return command.main(cmd_args)
2022-10-21T07:38:13,687     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 101, in main
2022-10-21T07:38:13,687       return self._main(args)
2022-10-21T07:38:13,688     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 223, in _main
2022-10-21T07:38:13,688       self.handle_pip_version_check(options)
2022-10-21T07:38:13,688     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 190, in handle_pip_version_check
2022-10-21T07:38:13,688       pip_self_version_check(session, options)
2022-10-21T07:38:13,688     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 236, in pip_self_version_check
2022-10-21T07:38:13,688       logger.warning("[present-rich] %s", upgrade_prompt)
2022-10-21T07:38:13,689     File "/usr/lib/python3.9/logging/__init__.py", line 1454, in warning
2022-10-21T07:38:13,689       self._log(WARNING, msg, args, **kwargs)
2022-10-21T07:38:13,689     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-10-21T07:38:13,689       self.handle(record)
2022-10-21T07:38:13,689     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-10-21T07:38:13,689       self.callHandlers(record)
2022-10-21T07:38:13,689     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-10-21T07:38:13,689       hdlr.handle(record)
2022-10-21T07:38:13,690     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-10-21T07:38:13,690       self.emit(record)
2022-10-21T07:38:13,690     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 179, in emit
2022-10-21T07:38:13,690       self.handleError(record)
2022-10-21T07:38:13,690   Message: '[present-rich] %s'
2022-10-21T07:38:13,690   Arguments: (UpgradePrompt(old='22.2.2', new='22.3'),)
2022-10-21T07:38:14,089   Installing build dependencies: finished with status 'done'
2022-10-21T07:38:14,095   Getting requirements to build wheel: started
2022-10-21T07:38:14,096   Running command Getting requirements to build wheel
2022-10-21T07:38:16,735   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-10-21T07:38:16,736     warnings.warn(msg, _BetaConfiguration)
2022-10-21T07:38:17,025   running egg_info
2022-10-21T07:38:17,041   writing moleculekit.egg-info/PKG-INFO
2022-10-21T07:38:17,043   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2022-10-21T07:38:17,045   writing requirements to moleculekit.egg-info/requires.txt
2022-10-21T07:38:17,047   writing top-level names to moleculekit.egg-info/top_level.txt
2022-10-21T07:38:17,090   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-10-21T07:38:17,124   reading manifest template 'MANIFEST.in'
2022-10-21T07:38:17,383   no previously-included directories found matching 'moleculekit/test-data'
2022-10-21T07:38:17,384   no previously-included directories found matching 'moleculekit/tests'
2022-10-21T07:38:17,385   no previously-included directories found matching 'package'
2022-10-21T07:38:17,386   adding license file 'LICENSE'
2022-10-21T07:38:17,402   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-10-21T07:38:17,653   Getting requirements to build wheel: finished with status 'done'
2022-10-21T07:38:17,671   Installing backend dependencies: started
2022-10-21T07:38:17,672   Running command pip subprocess to install backend dependencies
2022-10-21T07:38:18,870   Using pip 22.2.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-10-21T07:38:19,311   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-21T07:38:19,826   Collecting wheel
2022-10-21T07:38:19,845     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-10-21T07:38:21,562   Installing collected packages: wheel
2022-10-21T07:38:21,707     Creating /tmp/pip-build-env-51rwbgq2/normal/bin
2022-10-21T07:38:21,710     changing mode of /tmp/pip-build-env-51rwbgq2/normal/bin/wheel to 755
2022-10-21T07:38:21,723   Successfully installed wheel-0.37.1
2022-10-21T07:38:21,762   --- Logging error ---
2022-10-21T07:38:21,767   Traceback (most recent call last):
2022-10-21T07:38:21,767     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 177, in emit
2022-10-21T07:38:21,768       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-10-21T07:38:21,768     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1673, in print
2022-10-21T07:38:21,768       extend(render(renderable, render_options))
2022-10-21T07:38:21,768     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1305, in render
2022-10-21T07:38:21,768       for render_output in iter_render:
2022-10-21T07:38:21,768     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-10-21T07:38:21,768       for line in lines:
2022-10-21T07:38:21,768     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/segment.py", line 249, in split_lines
2022-10-21T07:38:21,769       for segment in segments:
2022-10-21T07:38:21,769     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1283, in render
2022-10-21T07:38:21,769       renderable = rich_cast(renderable)
2022-10-21T07:38:21,769     File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-10-21T07:38:21,769       renderable = cast_method()
2022-10-21T07:38:21,769     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-10-21T07:38:21,769       pip_cmd = get_best_invocation_for_this_pip()
2022-10-21T07:38:21,769     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-10-21T07:38:21,770       if found_executable and os.path.samefile(
2022-10-21T07:38:21,770     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-10-21T07:38:21,770       s2 = os.stat(f2)
2022-10-21T07:38:21,770   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-10-21T07:38:21,770   Call stack:
2022-10-21T07:38:21,773     File "/usr/local/lib/python3.9/dist-packages/pip/__pip-runner__.py", line 36, in <module>
2022-10-21T07:38:21,773       runpy.run_module("pip", run_name="__main__", alter_sys=True)
2022-10-21T07:38:21,773     File "/usr/lib/python3.9/runpy.py", line 210, in run_module
2022-10-21T07:38:21,773       return _run_module_code(code, init_globals, run_name, mod_spec)
2022-10-21T07:38:21,773     File "/usr/lib/python3.9/runpy.py", line 97, in _run_module_code
2022-10-21T07:38:21,773       _run_code(code, mod_globals, init_globals,
2022-10-21T07:38:21,773     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-10-21T07:38:21,774       exec(code, run_globals)
2022-10-21T07:38:21,774     File "/usr/local/lib/python3.9/dist-packages/pip/__main__.py", line 31, in <module>
2022-10-21T07:38:21,774       sys.exit(_main())
2022-10-21T07:38:21,774     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/main.py", line 70, in main
2022-10-21T07:38:21,774       return command.main(cmd_args)
2022-10-21T07:38:21,774     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 101, in main
2022-10-21T07:38:21,774       return self._main(args)
2022-10-21T07:38:21,774     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 223, in _main
2022-10-21T07:38:21,775       self.handle_pip_version_check(options)
2022-10-21T07:38:21,775     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 190, in handle_pip_version_check
2022-10-21T07:38:21,775       pip_self_version_check(session, options)
2022-10-21T07:38:21,775     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 236, in pip_self_version_check
2022-10-21T07:38:21,775       logger.warning("[present-rich] %s", upgrade_prompt)
2022-10-21T07:38:21,775     File "/usr/lib/python3.9/logging/__init__.py", line 1454, in warning
2022-10-21T07:38:21,775       self._log(WARNING, msg, args, **kwargs)
2022-10-21T07:38:21,775     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-10-21T07:38:21,776       self.handle(record)
2022-10-21T07:38:21,776     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-10-21T07:38:21,776       self.callHandlers(record)
2022-10-21T07:38:21,776     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-10-21T07:38:21,776       hdlr.handle(record)
2022-10-21T07:38:21,776     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-10-21T07:38:21,776       self.emit(record)
2022-10-21T07:38:21,777     File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 179, in emit
2022-10-21T07:38:21,777       self.handleError(record)
2022-10-21T07:38:21,777   Message: '[present-rich] %s'
2022-10-21T07:38:21,777   Arguments: (UpgradePrompt(old='22.2.2', new='22.3'),)
2022-10-21T07:38:21,997   Installing backend dependencies: finished with status 'done'
2022-10-21T07:38:22,000   Created temporary directory: /tmp/pip-modern-metadata-z_2j9o_q
2022-10-21T07:38:22,003   Preparing metadata (pyproject.toml): started
2022-10-21T07:38:22,004   Running command Preparing metadata (pyproject.toml)
2022-10-21T07:38:24,030   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-10-21T07:38:24,031     warnings.warn(msg, _BetaConfiguration)
2022-10-21T07:38:24,331   running dist_info
2022-10-21T07:38:24,334   creating /tmp/pip-modern-metadata-z_2j9o_q/moleculekit.egg-info
2022-10-21T07:38:24,349   writing /tmp/pip-modern-metadata-z_2j9o_q/moleculekit.egg-info/PKG-INFO
2022-10-21T07:38:24,352   writing dependency_links to /tmp/pip-modern-metadata-z_2j9o_q/moleculekit.egg-info/dependency_links.txt
2022-10-21T07:38:24,371   writing requirements to /tmp/pip-modern-metadata-z_2j9o_q/moleculekit.egg-info/requires.txt
2022-10-21T07:38:24,372   writing top-level names to /tmp/pip-modern-metadata-z_2j9o_q/moleculekit.egg-info/top_level.txt
2022-10-21T07:38:24,373   writing manifest file '/tmp/pip-modern-metadata-z_2j9o_q/moleculekit.egg-info/SOURCES.txt'
2022-10-21T07:38:24,426   reading manifest file '/tmp/pip-modern-metadata-z_2j9o_q/moleculekit.egg-info/SOURCES.txt'
2022-10-21T07:38:24,430   reading manifest template 'MANIFEST.in'
2022-10-21T07:38:24,736   no previously-included directories found matching 'moleculekit/test-data'
2022-10-21T07:38:24,737   no previously-included directories found matching 'moleculekit/tests'
2022-10-21T07:38:24,737   no previously-included directories found matching 'package'
2022-10-21T07:38:24,737   adding license file 'LICENSE'
2022-10-21T07:38:24,750   writing manifest file '/tmp/pip-modern-metadata-z_2j9o_q/moleculekit.egg-info/SOURCES.txt'
2022-10-21T07:38:24,760   creating '/tmp/pip-modern-metadata-z_2j9o_q/moleculekit-1.5.0.dist-info'
2022-10-21T07:38:24,824   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-10-21T07:38:25,073   Preparing metadata (pyproject.toml): finished with status 'done'
2022-10-21T07:38:25,081   Source in /tmp/pip-wheel-pnfc4vk_/moleculekit_b8bf28a8231e440eb26aba84b4b4700d has version 1.5.0, which satisfies requirement moleculekit==1.5.0 from https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz
2022-10-21T07:38:25,082   Removed moleculekit==1.5.0 from https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-4gjg_3_t'
2022-10-21T07:38:25,089 Created temporary directory: /tmp/pip-unpack-_fdxc_4k
2022-10-21T07:38:25,089 Building wheels for collected packages: moleculekit
2022-10-21T07:38:25,094   Created temporary directory: /tmp/pip-wheel-h3n2mut7
2022-10-21T07:38:25,095   Destination directory: /tmp/pip-wheel-h3n2mut7
2022-10-21T07:38:25,097   Building wheel for moleculekit (pyproject.toml): started
2022-10-21T07:38:25,098   Running command Building wheel for moleculekit (pyproject.toml)
2022-10-21T07:38:27,105   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-10-21T07:38:27,106     warnings.warn(msg, _BetaConfiguration)
2022-10-21T07:38:27,411   running bdist_wheel
2022-10-21T07:38:27,452   running build
2022-10-21T07:38:27,452   running build_py
2022-10-21T07:38:27,461   creating build
2022-10-21T07:38:27,461   creating build/lib.linux-armv7l-cpython-39
2022-10-21T07:38:27,462   creating build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,463   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,465   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,468   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,470   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,472   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,473   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,475   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,478   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,480   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,481   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,483   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,484   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,486   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,488   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,490   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,491   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,496   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,497   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,500   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:27,505   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-21T07:38:27,505   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-21T07:38:27,508   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-21T07:38:27,510   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-21T07:38:27,511   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-10-21T07:38:27,514   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,515   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,517   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,519   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,522   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,524   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,526   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,529   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,531   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,533   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,535   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,538   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,540   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,542   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,544   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,546   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-10-21T07:38:27,548   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-10-21T07:38:27,549   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-10-21T07:38:27,554   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-10-21T07:38:27,555   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-10-21T07:38:27,559   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-21T07:38:27,560   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-21T07:38:27,562   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-21T07:38:27,564   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-21T07:38:27,567   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-21T07:38:27,570   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-21T07:38:27,572   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-10-21T07:38:27,575   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,576   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,578   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,581   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,583   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,586   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,588   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,590   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,593   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,595   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,597   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,599   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,601   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,603   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-10-21T07:38:27,605   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-10-21T07:38:27,606   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-10-21T07:38:27,609   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-10-21T07:38:27,611   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2022-10-21T07:38:27,612   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2022-10-21T07:38:27,614   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-21T07:38:27,614   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-21T07:38:27,616   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-21T07:38:27,618   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-21T07:38:27,620   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-10-21T07:38:27,623   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-10-21T07:38:27,623   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-10-21T07:38:27,625   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-10-21T07:38:27,628   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-21T07:38:27,629   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-21T07:38:27,631   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-21T07:38:27,633   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-21T07:38:27,635   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-10-21T07:38:27,637   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-10-21T07:38:27,638   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-10-21T07:38:27,640   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-10-21T07:38:27,642   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-21T07:38:27,643   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-21T07:38:27,645   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-21T07:38:27,646   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-21T07:38:27,649   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-10-21T07:38:27,652   running egg_info
2022-10-21T07:38:27,667   writing moleculekit.egg-info/PKG-INFO
2022-10-21T07:38:27,669   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2022-10-21T07:38:27,670   writing requirements to moleculekit.egg-info/requires.txt
2022-10-21T07:38:27,671   writing top-level names to moleculekit.egg-info/top_level.txt
2022-10-21T07:38:27,701   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-10-21T07:38:27,710   reading manifest template 'MANIFEST.in'
2022-10-21T07:38:27,958   no previously-included directories found matching 'moleculekit/test-data'
2022-10-21T07:38:27,959   no previously-included directories found matching 'moleculekit/tests'
2022-10-21T07:38:27,960   no previously-included directories found matching 'package'
2022-10-21T07:38:27,960   adding license file 'LICENSE'
2022-10-21T07:38:27,977   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-10-21T07:38:27,988   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.atomselect_utils' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:27,988       !!


2022-10-21T07:38:27,988       ############################
2022-10-21T07:38:27,988       # Package would be ignored #
2022-10-21T07:38:27,989       ############################
2022-10-21T07:38:27,989       Python recognizes 'moleculekit.atomselect_utils' as an importable package,
2022-10-21T07:38:27,989       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:27,989       'moleculekit.atomselect_utils' has been automatically added to the distribution only
2022-10-21T07:38:27,989       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:27,989       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:27,990       Please make sure that 'moleculekit.atomselect_utils' is included as a package by using
2022-10-21T07:38:27,990       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:27,990       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:27,990       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:27,990       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:27,990       documentation page.


2022-10-21T07:38:27,991   !!

2022-10-21T07:38:27,991     check.warn(importable)
2022-10-21T07:38:27,991   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.bondguesser_utils' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:27,991       !!


2022-10-21T07:38:27,991       ############################
2022-10-21T07:38:27,992       # Package would be ignored #
2022-10-21T07:38:27,992       ############################
2022-10-21T07:38:27,992       Python recognizes 'moleculekit.bondguesser_utils' as an importable package,
2022-10-21T07:38:27,992       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:27,992       'moleculekit.bondguesser_utils' has been automatically added to the distribution only
2022-10-21T07:38:27,992       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:27,992       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:27,993       Please make sure that 'moleculekit.bondguesser_utils' is included as a package by using
2022-10-21T07:38:27,993       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:27,993       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:27,993       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:27,993       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:27,993       documentation page.


2022-10-21T07:38:27,994   !!

2022-10-21T07:38:27,994     check.warn(importable)
2022-10-21T07:38:27,994   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.distance_utils' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:27,994       !!


2022-10-21T07:38:27,994       ############################
2022-10-21T07:38:27,995       # Package would be ignored #
2022-10-21T07:38:27,995       ############################
2022-10-21T07:38:27,995       Python recognizes 'moleculekit.distance_utils' as an importable package,
2022-10-21T07:38:27,995       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:27,995       'moleculekit.distance_utils' has been automatically added to the distribution only
2022-10-21T07:38:27,995       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:27,995       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:27,996       Please make sure that 'moleculekit.distance_utils' is included as a package by using
2022-10-21T07:38:27,996       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:27,996       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:27,996       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:27,996       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:27,996       documentation page.


2022-10-21T07:38:27,997   !!

2022-10-21T07:38:27,997     check.warn(importable)
2022-10-21T07:38:27,997   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.cationpi' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:27,997       !!


2022-10-21T07:38:27,997       ############################
2022-10-21T07:38:27,998       # Package would be ignored #
2022-10-21T07:38:27,998       ############################
2022-10-21T07:38:27,998       Python recognizes 'moleculekit.interactions.cationpi' as an importable package,
2022-10-21T07:38:27,998       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:27,998       'moleculekit.interactions.cationpi' has been automatically added to the distribution only
2022-10-21T07:38:27,998       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:27,998       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:27,999       Please make sure that 'moleculekit.interactions.cationpi' is included as a package by using
2022-10-21T07:38:27,999       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:27,999       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:27,999       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:27,999       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:27,999       documentation page.


2022-10-21T07:38:28,000   !!

2022-10-21T07:38:28,000     check.warn(importable)
2022-10-21T07:38:28,000   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.hbonds' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,000       !!


2022-10-21T07:38:28,000       ############################
2022-10-21T07:38:28,000       # Package would be ignored #
2022-10-21T07:38:28,001       ############################
2022-10-21T07:38:28,001       Python recognizes 'moleculekit.interactions.hbonds' as an importable package,
2022-10-21T07:38:28,001       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,001       'moleculekit.interactions.hbonds' has been automatically added to the distribution only
2022-10-21T07:38:28,001       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,001       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,001       Please make sure that 'moleculekit.interactions.hbonds' is included as a package by using
2022-10-21T07:38:28,002       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,002       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,002       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,002       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,002       documentation page.


2022-10-21T07:38:28,002   !!

2022-10-21T07:38:28,003     check.warn(importable)
2022-10-21T07:38:28,003   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.pipi' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,003       !!


2022-10-21T07:38:28,003       ############################
2022-10-21T07:38:28,003       # Package would be ignored #
2022-10-21T07:38:28,003       ############################
2022-10-21T07:38:28,004       Python recognizes 'moleculekit.interactions.pipi' as an importable package,
2022-10-21T07:38:28,004       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,004       'moleculekit.interactions.pipi' has been automatically added to the distribution only
2022-10-21T07:38:28,004       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,004       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,004       Please make sure that 'moleculekit.interactions.pipi' is included as a package by using
2022-10-21T07:38:28,004       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,005       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,005       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,005       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,005       documentation page.


2022-10-21T07:38:28,005   !!

2022-10-21T07:38:28,006     check.warn(importable)
2022-10-21T07:38:28,006   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.sigmahole' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,006       !!


2022-10-21T07:38:28,006       ############################
2022-10-21T07:38:28,006       # Package would be ignored #
2022-10-21T07:38:28,006       ############################
2022-10-21T07:38:28,007       Python recognizes 'moleculekit.interactions.sigmahole' as an importable package,
2022-10-21T07:38:28,007       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,007       'moleculekit.interactions.sigmahole' has been automatically added to the distribution only
2022-10-21T07:38:28,007       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,007       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,007       Please make sure that 'moleculekit.interactions.sigmahole' is included as a package by using
2022-10-21T07:38:28,007       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,008       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,008       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,008       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,008       documentation page.


2022-10-21T07:38:28,008   !!

2022-10-21T07:38:28,009     check.warn(importable)
2022-10-21T07:38:28,009   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.occupancy_utils' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,009       !!


2022-10-21T07:38:28,009       ############################
2022-10-21T07:38:28,009       # Package would be ignored #
2022-10-21T07:38:28,009       ############################
2022-10-21T07:38:28,009       Python recognizes 'moleculekit.occupancy_utils' as an importable package,
2022-10-21T07:38:28,010       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,010       'moleculekit.occupancy_utils' has been automatically added to the distribution only
2022-10-21T07:38:28,010       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,010       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,010       Please make sure that 'moleculekit.occupancy_utils' is included as a package by using
2022-10-21T07:38:28,010       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,011       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,011       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,011       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,011       documentation page.


2022-10-21T07:38:28,011   !!

2022-10-21T07:38:28,012     check.warn(importable)
2022-10-21T07:38:28,012   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,012       !!


2022-10-21T07:38:28,012       ############################
2022-10-21T07:38:28,012       # Package would be ignored #
2022-10-21T07:38:28,012       ############################
2022-10-21T07:38:28,013       Python recognizes 'moleculekit.share' as an importable package,
2022-10-21T07:38:28,013       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,013       'moleculekit.share' has been automatically added to the distribution only
2022-10-21T07:38:28,013       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,013       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,013       Please make sure that 'moleculekit.share' is included as a package by using
2022-10-21T07:38:28,013       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,014       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,014       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,014       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,014       documentation page.


2022-10-21T07:38:28,014   !!

2022-10-21T07:38:28,014     check.warn(importable)
2022-10-21T07:38:28,015   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.atomselect' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,015       !!


2022-10-21T07:38:28,015       ############################
2022-10-21T07:38:28,015       # Package would be ignored #
2022-10-21T07:38:28,015       ############################
2022-10-21T07:38:28,015       Python recognizes 'moleculekit.share.atomselect' as an importable package,
2022-10-21T07:38:28,015       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,016       'moleculekit.share.atomselect' has been automatically added to the distribution only
2022-10-21T07:38:28,016       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,016       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,016       Please make sure that 'moleculekit.share.atomselect' is included as a package by using
2022-10-21T07:38:28,016       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,017       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,017       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,017       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,017       documentation page.


2022-10-21T07:38:28,017   !!

2022-10-21T07:38:28,018     check.warn(importable)
2022-10-21T07:38:28,018   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.pdb2pqr.residues' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,018       !!


2022-10-21T07:38:28,018       ############################
2022-10-21T07:38:28,018       # Package would be ignored #
2022-10-21T07:38:28,018       ############################
2022-10-21T07:38:28,018       Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package,
2022-10-21T07:38:28,019       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,019       'moleculekit.share.pdb2pqr.residues' has been automatically added to the distribution only
2022-10-21T07:38:28,019       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,019       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,019       Please make sure that 'moleculekit.share.pdb2pqr.residues' is included as a package by using
2022-10-21T07:38:28,019       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,019       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,020       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,020       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,020       documentation page.


2022-10-21T07:38:28,020   !!

2022-10-21T07:38:28,020     check.warn(importable)
2022-10-21T07:38:28,021   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,021       !!


2022-10-21T07:38:28,021       ############################
2022-10-21T07:38:28,021       # Package would be ignored #
2022-10-21T07:38:28,021       ############################
2022-10-21T07:38:28,021       Python recognizes 'moleculekit.tmalign' as an importable package,
2022-10-21T07:38:28,021       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,022       'moleculekit.tmalign' has been automatically added to the distribution only
2022-10-21T07:38:28,022       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,022       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,022       Please make sure that 'moleculekit.tmalign' is included as a package by using
2022-10-21T07:38:28,022       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,022       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,022       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,023       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,023       documentation page.


2022-10-21T07:38:28,023   !!

2022-10-21T07:38:28,023     check.warn(importable)
2022-10-21T07:38:28,023   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.include' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,023       !!


2022-10-21T07:38:28,024       ############################
2022-10-21T07:38:28,024       # Package would be ignored #
2022-10-21T07:38:28,024       ############################
2022-10-21T07:38:28,024       Python recognizes 'moleculekit.tmalign.include' as an importable package,
2022-10-21T07:38:28,024       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,024       'moleculekit.tmalign.include' has been automatically added to the distribution only
2022-10-21T07:38:28,025       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,025       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,025       Please make sure that 'moleculekit.tmalign.include' is included as a package by using
2022-10-21T07:38:28,025       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,025       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,025       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,025       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,026       documentation page.


2022-10-21T07:38:28,026   !!

2022-10-21T07:38:28,026     check.warn(importable)
2022-10-21T07:38:28,026   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.src' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,026       !!


2022-10-21T07:38:28,027       ############################
2022-10-21T07:38:28,027       # Package would be ignored #
2022-10-21T07:38:28,027       ############################
2022-10-21T07:38:28,027       Python recognizes 'moleculekit.tmalign.src' as an importable package,
2022-10-21T07:38:28,027       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,028       'moleculekit.tmalign.src' has been automatically added to the distribution only
2022-10-21T07:38:28,028       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,028       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,028       Please make sure that 'moleculekit.tmalign.src' is included as a package by using
2022-10-21T07:38:28,028       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,028       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,028       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,029       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,029       documentation page.


2022-10-21T07:38:28,029   !!

2022-10-21T07:38:28,029     check.warn(importable)
2022-10-21T07:38:28,030   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.wrapping' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,030       !!


2022-10-21T07:38:28,030       ############################
2022-10-21T07:38:28,030       # Package would be ignored #
2022-10-21T07:38:28,030       ############################
2022-10-21T07:38:28,030       Python recognizes 'moleculekit.wrapping' as an importable package,
2022-10-21T07:38:28,031       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,031       'moleculekit.wrapping' has been automatically added to the distribution only
2022-10-21T07:38:28,031       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,031       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,031       Please make sure that 'moleculekit.wrapping' is included as a package by using
2022-10-21T07:38:28,031       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,032       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,032       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,032       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,032       documentation page.


2022-10-21T07:38:28,032   !!

2022-10-21T07:38:28,033     check.warn(importable)
2022-10-21T07:38:28,033   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,033       !!


2022-10-21T07:38:28,033       ############################
2022-10-21T07:38:28,033       # Package would be ignored #
2022-10-21T07:38:28,034       ############################
2022-10-21T07:38:28,034       Python recognizes 'moleculekit.xtc_utils' as an importable package,
2022-10-21T07:38:28,034       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,034       'moleculekit.xtc_utils' has been automatically added to the distribution only
2022-10-21T07:38:28,034       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,034       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,035       Please make sure that 'moleculekit.xtc_utils' is included as a package by using
2022-10-21T07:38:28,035       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,035       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,035       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,035       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,035       documentation page.


2022-10-21T07:38:28,036   !!

2022-10-21T07:38:28,036     check.warn(importable)
2022-10-21T07:38:28,036   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.include' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,036       !!


2022-10-21T07:38:28,036       ############################
2022-10-21T07:38:28,037       # Package would be ignored #
2022-10-21T07:38:28,037       ############################
2022-10-21T07:38:28,037       Python recognizes 'moleculekit.xtc_utils.include' as an importable package,
2022-10-21T07:38:28,037       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,037       'moleculekit.xtc_utils.include' has been automatically added to the distribution only
2022-10-21T07:38:28,037       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,037       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,038       Please make sure that 'moleculekit.xtc_utils.include' is included as a package by using
2022-10-21T07:38:28,038       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,038       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,038       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,038       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,038       documentation page.


2022-10-21T07:38:28,039   !!

2022-10-21T07:38:28,039     check.warn(importable)
2022-10-21T07:38:28,039   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.src' as data is deprecated, please list it in `packages`.
2022-10-21T07:38:28,039       !!


2022-10-21T07:38:28,039       ############################
2022-10-21T07:38:28,039       # Package would be ignored #
2022-10-21T07:38:28,040       ############################
2022-10-21T07:38:28,040       Python recognizes 'moleculekit.xtc_utils.src' as an importable package,
2022-10-21T07:38:28,040       but it is not listed in the `packages` configuration of setuptools.

2022-10-21T07:38:28,040       'moleculekit.xtc_utils.src' has been automatically added to the distribution only
2022-10-21T07:38:28,040       because it may contain data files, but this behavior is likely to change
2022-10-21T07:38:28,040       in future versions of setuptools (and therefore is considered deprecated).

2022-10-21T07:38:28,040       Please make sure that 'moleculekit.xtc_utils.src' is included as a package by using
2022-10-21T07:38:28,041       the `packages` configuration field or the proper discovery methods
2022-10-21T07:38:28,041       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-21T07:38:28,041       instead of `find_packages(...)`/`find:`).

2022-10-21T07:38:28,041       You can read more about "package discovery" and "data files" on setuptools
2022-10-21T07:38:28,041       documentation page.


2022-10-21T07:38:28,042   !!

2022-10-21T07:38:28,042     check.warn(importable)
2022-10-21T07:38:28,042   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:28,042   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:28,042   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-10-21T07:38:28,043   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-10-21T07:38:28,061   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-10-21T07:38:28,064   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-10-21T07:38:28,068   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-10-21T07:38:28,091   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-10-21T07:38:28,094   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-10-21T07:38:28,094   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-10-21T07:38:28,117   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-10-21T07:38:28,119   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-10-21T07:38:28,120   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-10-21T07:38:28,141   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-10-21T07:38:28,143   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-10-21T07:38:28,143   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-10-21T07:38:28,146   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-10-21T07:38:28,148   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2022-10-21T07:38:28,149   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2022-10-21T07:38:28,151   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2022-10-21T07:38:28,152   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,153   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,155   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,157   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,159   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,161   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,163   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,165   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,168   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,170   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,172   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,174   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,177   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,179   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,181   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,183   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,185   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,188   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,190   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,193   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,195   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,197   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,199   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,202   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,204   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,207   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,209   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,211   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,214   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,216   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,218   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,220   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,223   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,225   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,227   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,229   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,231   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,234   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,236   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,238   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,240   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,242   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,244   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,247   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,249   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,252   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,254   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,256   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,259   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,261   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,264   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,266   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,269   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,271   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,273   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,275   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,278   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,280   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,282   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,285   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,287   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,289   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,291   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,294   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,296   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,299   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,301   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,304   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,307   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,309   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,311   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,313   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,316   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,318   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,324   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,327   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,329   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,331   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,333   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,335   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,338   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,340   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,342   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,344   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,347   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,349   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,351   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,353   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,356   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,358   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,360   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,362   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,364   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,367   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,369   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,371   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,373   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,376   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,378   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,380   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,383   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,385   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,387   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,389   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,391   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,393   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,396   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,398   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,400   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,402   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,405   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,407   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,409   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,412   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,414   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,417   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,419   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,421   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,424   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,426   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,428   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,430   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,433   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,435   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,438   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,440   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,443   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,445   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,448   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,450   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,452   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,454   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,457   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,459   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,461   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,463   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,465   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,468   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,470   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,472   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,474   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,476   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,478   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,481   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,483   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,485   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,487   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,489   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,491   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,493   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,496   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,498   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,500   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,502   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,504   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,507   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,509   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,511   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,514   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,516   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,518   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,520   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,523   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,525   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,527   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,529   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,531   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,533   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,535   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,537   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,540   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,542   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,544   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,546   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,548   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,550   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-10-21T07:38:28,552   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-21T07:38:28,553   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-21T07:38:28,574   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-21T07:38:28,578   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-21T07:38:28,580   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2022-10-21T07:38:28,581   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2022-10-21T07:38:28,584   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-10-21T07:38:28,584   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-10-21T07:38:28,591   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-10-21T07:38:28,592   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-10-21T07:38:28,613   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-10-21T07:38:28,615   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-21T07:38:28,616   copying moleculekit/xtc_utils/xtc.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-21T07:38:28,637   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-21T07:38:28,639   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-21T07:38:28,641   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-10-21T07:38:28,642   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-10-21T07:38:28,645   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-10-21T07:38:28,647   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-10-21T07:38:28,650   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-21T07:38:28,650   copying moleculekit/xtc_utils/src/xdrfile.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-21T07:38:28,655   copying moleculekit/xtc_utils/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-21T07:38:28,657   copying moleculekit/xtc_utils/src/xtc.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-21T07:38:28,660   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-10-21T07:38:28,661   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-10-21T07:38:28,683   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-10-21T07:38:28,686   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-10-21T07:38:28,687   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-10-21T07:38:28,709   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-10-21T07:38:28,711   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-10-21T07:38:28,712   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-10-21T07:38:28,734   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-10-21T07:38:28,737   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-10-21T07:38:28,737   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-10-21T07:38:28,759   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-10-21T07:38:28,771   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2022-10-21T07:38:28,772   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.5.0'
2022-10-21T07:38:28,772   running build_ext
2022-10-21T07:38:28,783   building 'moleculekit.interactions.hbonds' extension
2022-10-21T07:38:28,783   creating build/temp.linux-armv7l-cpython-39
2022-10-21T07:38:28,784   creating build/temp.linux-armv7l-cpython-39/moleculekit
2022-10-21T07:38:28,784   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2022-10-21T07:38:28,785   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-10-21T07:38:28,786   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2022-10-21T07:38:29,267   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:38:29,268                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:38:29,268                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:38:29,268                    from moleculekit/interactions/hbonds/hbonds.cpp:786:
2022-10-21T07:38:29,268   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:38:29,268      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:38:29,268         |  ^~~~~~~
2022-10-21T07:38:48,474   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:38:48,818   building 'moleculekit.interactions.pipi' extension
2022-10-21T07:38:48,819   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-10-21T07:38:48,820   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2022-10-21T07:38:49,088   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:38:49,088                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:38:49,089                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:38:49,089                    from moleculekit/interactions/pipi/pipi.cpp:786:
2022-10-21T07:38:49,089   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:38:49,089      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:38:49,089         |  ^~~~~~~
2022-10-21T07:39:10,368   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:39:10,740   building 'moleculekit.interactions.cationpi' extension
2022-10-21T07:39:10,741   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-10-21T07:39:10,742   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2022-10-21T07:39:11,000   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:39:11,000                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:39:11,000                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:39:11,000                    from moleculekit/interactions/cationpi/cationpi.cpp:786:
2022-10-21T07:39:11,000   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:39:11,001      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:39:11,001         |  ^~~~~~~
2022-10-21T07:39:32,142   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:39:32,488   building 'moleculekit.interactions.sigmahole' extension
2022-10-21T07:39:32,489   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-10-21T07:39:32,489   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2022-10-21T07:39:32,756   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:39:32,756                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:39:32,756                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:39:32,756                    from moleculekit/interactions/sigmahole/sigmahole.cpp:786:
2022-10-21T07:39:32,756   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:39:32,757      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:39:32,757         |  ^~~~~~~
2022-10-21T07:39:53,615   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:39:53,963   building 'moleculekit.wrapping' extension
2022-10-21T07:39:53,964   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2022-10-21T07:39:53,964   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2022-10-21T07:39:54,225   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:39:54,226                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:39:54,226                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:39:54,226                    from moleculekit/wrapping/wrapping.cpp:786:
2022-10-21T07:39:54,226   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:39:54,226      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:39:54,226         |  ^~~~~~~
2022-10-21T07:40:11,746   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:40:11,971   building 'moleculekit.bondguesser_utils' extension
2022-10-21T07:40:11,972   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-10-21T07:40:11,973   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2022-10-21T07:40:12,253   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:40:12,253                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:40:12,253                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:40:12,253                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:786:
2022-10-21T07:40:12,253   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:40:12,254      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:40:12,254         |  ^~~~~~~
2022-10-21T07:40:13,443   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2022-10-21T07:40:13,443   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2954:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-10-21T07:40:13,443    2954 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2022-10-21T07:40:13,443         |                       ~~~~~~~~~~^~~~~~~~~~~
2022-10-21T07:40:13,444   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2966:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-10-21T07:40:13,444    2966 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2022-10-21T07:40:13,444         |                         ~~~~~~~~~~^~~~~~~~~~~
2022-10-21T07:40:13,445   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2978:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-10-21T07:40:13,445    2978 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2022-10-21T07:40:13,445         |                           ~~~~~~~~~~^~~~~~~~~~~
2022-10-21T07:40:13,446   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3017:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,446    3017 |         __pyx_t_12 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-21T07:40:13,446         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,447   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3056:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,447    3056 |         __pyx_t_12 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-21T07:40:13,447         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,448   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3095:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,448    3095 |         __pyx_t_12 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-21T07:40:13,448         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,449   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3134:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,449    3134 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-21T07:40:13,449         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,449   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3140:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,450    3140 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-21T07:40:13,450         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,451   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3181:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,451    3181 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-21T07:40:13,451         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,451   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3187:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,452    3187 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-21T07:40:13,452         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,452   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3228:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,453    3228 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-21T07:40:13,453         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,453   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3234:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,453    3234 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-21T07:40:13,454         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,454   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3275:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,455    3275 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-21T07:40:13,455         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,456   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3328:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,456    3328 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-21T07:40:13,456         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,457   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3375:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,457    3375 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-21T07:40:13,457         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,458   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3416:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,458    3416 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-21T07:40:13,458         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,459   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3422:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,459    3422 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-21T07:40:13,459         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,460   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3428:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,460    3428 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-21T07:40:13,460         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,461   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3475:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,461    3475 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-10-21T07:40:13,461         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,462   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3481:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,462    3481 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-21T07:40:13,462         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,463   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3522:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,463    3522 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-10-21T07:40:13,463         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,464   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3534:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,464    3534 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-21T07:40:13,464         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,465   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3587:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-10-21T07:40:13,465    3587 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-10-21T07:40:13,465         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,492   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2022-10-21T07:40:13,492   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4136:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-21T07:40:13,492    4136 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_n_boxes) != 0);
2022-10-21T07:40:13,493         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2022-10-21T07:40:13,493   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4173:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-21T07:40:13,493    4173 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_boxidx) != 0);
2022-10-21T07:40:13,493         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2022-10-21T07:40:30,202   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:40:30,527   building 'moleculekit.atomselect_utils' extension
2022-10-21T07:40:30,527   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-10-21T07:40:30,528   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2022-10-21T07:40:30,796   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:40:30,796                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:40:30,797                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:40:30,797                    from moleculekit/atomselect_utils/atomselect_utils.cpp:786:
2022-10-21T07:40:30,797   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:40:30,797      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:40:30,797         |  ^~~~~~~
2022-10-21T07:40:32,146   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2022-10-21T07:40:32,146   moleculekit/atomselect_utils/atomselect_utils.cpp:5406:162: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-21T07:40:32,147    5406 |       __pyx_t_3 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum) != 0);
2022-10-21T07:40:32,147         |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2022-10-21T07:40:32,151   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2022-10-21T07:40:32,151   moleculekit/atomselect_utils/atomselect_utils.cpp:5660:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-21T07:40:32,152    5660 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2022-10-21T07:40:32,152         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-21T07:40:32,156   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2022-10-21T07:40:32,157   moleculekit/atomselect_utils/atomselect_utils.cpp:5926:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-21T07:40:32,157    5926 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2022-10-21T07:40:32,157         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-21T07:40:55,168   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:40:55,531   building 'moleculekit.distance_utils' extension
2022-10-21T07:40:55,532   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-10-21T07:40:55,533   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2022-10-21T07:40:55,834   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:40:55,834                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:40:55,834                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:40:55,834                    from moleculekit/distance_utils/distance_utils.cpp:786:
2022-10-21T07:40:55,835   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:40:55,835      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:40:55,835         |  ^~~~~~~
2022-10-21T07:41:13,628   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:41:13,855   building 'moleculekit.occupancy_utils' extension
2022-10-21T07:41:13,856   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-10-21T07:41:13,857   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2022-10-21T07:41:14,122   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:41:14,123                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:41:14,123                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:41:14,123                    from moleculekit/occupancy_utils/occupancy_utils.cpp:786:
2022-10-21T07:41:14,123   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:41:14,123      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:41:14,123         |  ^~~~~~~
2022-10-21T07:41:30,904   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:41:31,124   building 'moleculekit.xtc' extension
2022-10-21T07:41:31,125   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-10-21T07:41:31,125   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-10-21T07:41:31,127   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-10-21T07:41:31,323   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2022-10-21T07:41:31,324   moleculekit/xtc_utils/src/xdrfile.c:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2022-10-21T07:41:31,324     763 |  int errval=1;
2022-10-21T07:41:31,324         |      ^~~~~~
2022-10-21T07:41:31,324   moleculekit/xtc_utils/src/xdrfile.c:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-10-21T07:41:31,324     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-10-21T07:41:31,324         |                         ^~~~~~
2022-10-21T07:41:31,325   moleculekit/xtc_utils/src/xdrfile.c:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-10-21T07:41:31,325     756 |  int smallidx,  minidx, maxidx;
2022-10-21T07:41:31,325         |                 ^~~~~~
2022-10-21T07:41:31,331   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2022-10-21T07:41:31,332   moleculekit/xtc_utils/src/xdrfile.c:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-10-21T07:41:31,332    1001 |  int errval;
2022-10-21T07:41:31,332         |      ^~~~~~
2022-10-21T07:41:31,336   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2022-10-21T07:41:31,337   moleculekit/xtc_utils/src/xdrfile.c:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2022-10-21T07:41:31,337    1297 |  int errval=1;
2022-10-21T07:41:31,337         |      ^~~~~~
2022-10-21T07:41:31,338   moleculekit/xtc_utils/src/xdrfile.c:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-10-21T07:41:31,338    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-10-21T07:41:31,338         |                         ^~~~~~
2022-10-21T07:41:31,338   moleculekit/xtc_utils/src/xdrfile.c:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-10-21T07:41:31,338    1289 |  int smallidx,  maxidx, minidx;
2022-10-21T07:41:31,339         |                         ^~~~~~
2022-10-21T07:41:31,347   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2022-10-21T07:41:31,348   moleculekit/xtc_utils/src/xdrfile.c:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-10-21T07:41:31,348    1504 |  int errval=1;
2022-10-21T07:41:31,348         |      ^~~~~~
2022-10-21T07:41:33,550   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-10-21T07:41:33,784   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-10-21T07:41:33,948   moleculekit/xtc_utils/src/xtc.c: In function ‘xtc_read_new’:
2022-10-21T07:41:33,948   moleculekit/xtc_utils/src/xtc.c:201:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2022-10-21T07:41:33,949     201 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2022-10-21T07:41:33,949         |      ^~~
2022-10-21T07:41:33,952   moleculekit/xtc_utils/src/xtc.c: In function ‘xtc_write’:
2022-10-21T07:41:33,953   moleculekit/xtc_utils/src/xtc.c:416:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2022-10-21T07:41:33,953     416 |  int nf3 = nframes * 3;
2022-10-21T07:41:33,953         |      ^~~
2022-10-21T07:41:33,956   moleculekit/xtc_utils/src/xtc.c: In function ‘xtc_read_frame’:
2022-10-21T07:41:33,957   moleculekit/xtc_utils/src/xtc.c:495:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2022-10-21T07:41:33,957     495 |  int writing_index = 0;
2022-10-21T07:41:33,957         |      ^~~~~~~~~~~~~
2022-10-21T07:41:33,957   moleculekit/xtc_utils/src/xtc.c:494:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2022-10-21T07:41:33,958     494 |  int reading_index = 0;
2022-10-21T07:41:33,958         |      ^~~~~~~~~~~~~
2022-10-21T07:41:34,340   moleculekit/xtc_utils/src/xtc.c:539:12: warning: ‘garbage_natoms’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-21T07:41:34,340     539 |   frames = xtc_read(filename, garbage_natoms, &traj_nframes, &dt, &dstep);
2022-10-21T07:41:34,341         |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-21T07:41:34,490   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-10-21T07:41:34,837   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-10-21T07:41:34,838                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-10-21T07:41:34,838                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-10-21T07:41:34,838                    from moleculekit/xtc_utils/xtc.c:778:
2022-10-21T07:41:34,838   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-10-21T07:41:34,838      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-10-21T07:41:34,839         |  ^~~~~~~
2022-10-21T07:41:48,765   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:41:48,941   building 'moleculekit.tmalign' extension
2022-10-21T07:41:48,942   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2022-10-21T07:41:48,942   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-10-21T07:41:48,943   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2022-10-21T07:42:18,557   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2022-10-21T07:42:30,832   In file included from /usr/include/c++/10/vector:72,
2022-10-21T07:42:30,832                    from moleculekit/tmalign/tmalign_util.cpp:802:
2022-10-21T07:42:30,832   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2022-10-21T07:42:30,832   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-10-21T07:42:30,832     426 |       vector<_Tp, _Alloc>::
2022-10-21T07:42:30,832         |       ^~~~~~~~~~~~~~~~~~~
2022-10-21T07:42:31,132   In file included from /usr/include/c++/10/vector:67,
2022-10-21T07:42:31,132                    from moleculekit/tmalign/tmalign_util.cpp:802:
2022-10-21T07:42:31,132   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject*, PyObject*)’:
2022-10-21T07:42:31,133   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-10-21T07:42:31,133    1198 |    _M_realloc_insert(end(), __x);
2022-10-21T07:42:31,133         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-21T07:42:31,133   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-10-21T07:42:31,134    1198 |    _M_realloc_insert(end(), __x);
2022-10-21T07:42:31,134         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-21T07:42:32,977   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2022-10-21T07:42:33,494   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2022-10-21T07:42:33,495   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.5.0'
2022-10-21T07:42:33,495   installing to build/bdist.linux-armv7l/wheel
2022-10-21T07:42:33,495   running install
2022-10-21T07:42:33,520   running install_lib
2022-10-21T07:42:33,536   creating build/bdist.linux-armv7l
2022-10-21T07:42:33,536   creating build/bdist.linux-armv7l/wheel
2022-10-21T07:42:33,538   creating build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,540   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-21T07:42:33,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-21T07:42:33,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-21T07:42:33,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-21T07:42:33,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-10-21T07:42:33,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,625   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-10-21T07:42:33,626   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-10-21T07:42:33,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-10-21T07:42:33,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-10-21T07:42:33,633   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-10-21T07:42:33,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-10-21T07:42:33,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-10-21T07:42:33,640   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-10-21T07:42:33,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-10-21T07:42:33,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-10-21T07:42:33,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-10-21T07:42:33,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-10-21T07:42:33,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,703   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,706   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,708   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,725   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,733   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,736   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-10-21T07:42:33,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,748   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-10-21T07:42:33,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-10-21T07:42:33,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-10-21T07:42:33,789   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-10-21T07:42:33,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-10-21T07:42:33,792   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-10-21T07:42:33,813   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,844   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-10-21T07:42:33,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-10-21T07:42:33,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-10-21T07:42:33,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-10-21T07:42:33,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,858   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,862   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,864   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,896   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,900   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-21T07:42:33,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-21T07:42:33,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-21T07:42:33,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-21T07:42:33,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-21T07:42:33,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-21T07:42:33,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-10-21T07:42:33,917   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-21T07:42:33,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-21T07:42:33,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-21T07:42:33,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-21T07:42:33,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-10-21T07:42:33,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:33,934   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2022-10-21T07:42:33,935   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2022-10-21T07:42:33,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2022-10-21T07:42:33,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2022-10-21T07:42:33,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2022-10-21T07:42:33,944   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2022-10-21T07:42:33,948   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,976   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:33,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2022-10-21T07:42:33,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2022-10-21T07:42:34,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2022-10-21T07:42:34,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,199   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,207   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,229   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,231   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,233   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,235   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,240   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,295   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,304   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-10-21T07:42:34,309   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-10-21T07:42:34,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-10-21T07:42:34,335   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-10-21T07:42:34,338   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,344   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,347   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-10-21T07:42:34,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-10-21T07:42:34,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-10-21T07:42:34,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,354   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-10-21T07:42:34,377   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-10-21T07:42:34,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-10-21T07:42:34,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-10-21T07:42:34,401   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-21T07:42:34,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-21T07:42:34,429   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-10-21T07:42:34,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-10-21T07:42:34,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-10-21T07:42:34,457   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-21T07:42:34,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-21T07:42:34,523   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-10-21T07:42:34,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-10-21T07:42:34,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-10-21T07:42:34,550   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-10-21T07:42:34,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-10-21T07:42:34,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-10-21T07:42:34,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-21T07:42:34,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-21T07:42:34,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-10-21T07:42:34,618   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-10-21T07:42:34,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-10-21T07:42:34,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-10-21T07:42:34,647   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:34,675   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:34,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:34,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:34,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:34,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:34,724   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2022-10-21T07:42:34,726   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-21T07:42:34,727   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-21T07:42:34,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-21T07:42:34,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-21T07:42:34,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-10-21T07:42:34,736   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-10-21T07:42:34,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-10-21T07:42:34,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-10-21T07:42:34,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2022-10-21T07:42:34,743   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-21T07:42:34,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-21T07:42:34,748   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-21T07:42:34,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-21T07:42:34,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-10-21T07:42:34,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:34,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:34,784   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-10-21T07:42:34,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-10-21T07:42:34,808   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2022-10-21T07:42:34,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2022-10-21T07:42:34,816   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-10-21T07:42:34,818   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-10-21T07:42:34,821   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2022-10-21T07:42:34,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2022-10-21T07:42:34,824   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-10-21T07:42:34,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-10-21T07:42:34,827   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-10-21T07:42:34,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-10-21T07:42:34,855   running install_egg_info
2022-10-21T07:42:34,870   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.5.0-py3.9.egg-info
2022-10-21T07:42:34,886   running install_scripts
2022-10-21T07:42:34,930   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-10-21T07:42:34,954   creating build/bdist.linux-armv7l/wheel/moleculekit-1.5.0.dist-info/WHEEL
2022-10-21T07:42:34,956   creating '/tmp/pip-wheel-h3n2mut7/tmp6ctjm2cc/moleculekit-1.5.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-10-21T07:42:34,960   adding 'moleculekit/__init__.py'
2022-10-21T07:42:34,961   adding 'moleculekit/_version.py'
2022-10-21T07:42:34,962   adding 'moleculekit/align.py'
2022-10-21T07:42:35,260   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:35,272   adding 'moleculekit/bondguesser.py'
2022-10-21T07:42:35,488   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:35,496   adding 'moleculekit/config.py'
2022-10-21T07:42:35,498   adding 'moleculekit/dihedral.py'
2022-10-21T07:42:35,705   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:35,713   adding 'moleculekit/home.py'
2022-10-21T07:42:35,714   adding 'moleculekit/logging.ini'
2022-10-21T07:42:35,727   adding 'moleculekit/molecule.py'
2022-10-21T07:42:35,929   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:35,937   adding 'moleculekit/periodictable.py'
2022-10-21T07:42:35,939   adding 'moleculekit/pymolgraphics.py'
2022-10-21T07:42:35,940   adding 'moleculekit/rcsb.py'
2022-10-21T07:42:35,941   adding 'moleculekit/rdkitintegration.py'
2022-10-21T07:42:35,953   adding 'moleculekit/readers.py'
2022-10-21T07:42:36,521   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:36,544   adding 'moleculekit/util.py'
2022-10-21T07:42:36,545   adding 'moleculekit/version.py'
2022-10-21T07:42:36,546   adding 'moleculekit/viewer.py'
2022-10-21T07:42:36,548   adding 'moleculekit/vmd_wrapper'
2022-10-21T07:42:36,550   adding 'moleculekit/vmdgraphics.py'
2022-10-21T07:42:36,552   adding 'moleculekit/vmdviewer.py'
2022-10-21T07:42:36,759   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:36,770   adding 'moleculekit/writers.py'
2022-10-21T07:42:36,991   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:36,999   adding 'moleculekit/atomselect/__init__.py'
2022-10-21T07:42:37,001   adding 'moleculekit/atomselect/analyze.py'
2022-10-21T07:42:37,003   adding 'moleculekit/atomselect/atomselect.py'
2022-10-21T07:42:37,005   adding 'moleculekit/atomselect/languageparser.py'
2022-10-21T07:42:37,089   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2022-10-21T07:42:37,099   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2022-10-21T07:42:37,171   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2022-10-21T07:42:37,179   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2022-10-21T07:42:37,249   adding 'moleculekit/distance_utils/distance_utils.cpp'
2022-10-21T07:42:37,256   adding 'moleculekit/distance_utils/distance_utils.pyx'
2022-10-21T07:42:37,258   adding 'moleculekit/interactions/__init__.py'
2022-10-21T07:42:37,511   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:37,749   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:37,760   adding 'moleculekit/interactions/interactions.py'
2022-10-21T07:42:38,011   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:38,271   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2022-10-21T07:42:38,352   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2022-10-21T07:42:38,360   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2022-10-21T07:42:38,432   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2022-10-21T07:42:38,440   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2022-10-21T07:42:38,513   adding 'moleculekit/interactions/pipi/pipi.cpp'
2022-10-21T07:42:38,520   adding 'moleculekit/interactions/pipi/pipi.pyx'
2022-10-21T07:42:38,593   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2022-10-21T07:42:38,600   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2022-10-21T07:42:38,669   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2022-10-21T07:42:38,675   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2022-10-21T07:42:38,677   adding 'moleculekit/pdbx/__init__.py'
2022-10-21T07:42:38,681   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2022-10-21T07:42:38,684   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2022-10-21T07:42:38,686   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2022-10-21T07:42:38,687   adding 'moleculekit/pdbx/reader/__init__.py'
2022-10-21T07:42:38,689   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2022-10-21T07:42:38,690   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2022-10-21T07:42:38,692   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2022-10-21T07:42:38,693   adding 'moleculekit/pdbx/tests/__init__.py'
2022-10-21T07:42:38,695   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2022-10-21T07:42:38,696   adding 'moleculekit/pdbx/writer/__init__.py'
2022-10-21T07:42:38,698   adding 'moleculekit/ply/__init__.py'
2022-10-21T07:42:38,702   adding 'moleculekit/ply/lex.py'
2022-10-21T07:42:38,713   adding 'moleculekit/ply/yacc.py'
2022-10-21T07:42:38,716   adding 'moleculekit/projections/__init__.py'
2022-10-21T07:42:38,718   adding 'moleculekit/projections/metriccoordinate.py'
2022-10-21T07:42:38,721   adding 'moleculekit/projections/metricdihedral.py'
2022-10-21T07:42:38,724   adding 'moleculekit/projections/metricdistance.py'
2022-10-21T07:42:38,726   adding 'moleculekit/projections/metricfluctuation.py'
2022-10-21T07:42:38,728   adding 'moleculekit/projections/metricgyration.py'
2022-10-21T07:42:38,731   adding 'moleculekit/projections/metricplumed2.py'
2022-10-21T07:42:38,733   adding 'moleculekit/projections/metricrmsd.py'
2022-10-21T07:42:38,735   adding 'moleculekit/projections/metricsasa.py'
2022-10-21T07:42:38,737   adding 'moleculekit/projections/metricsecondarystructure.py'
2022-10-21T07:42:38,739   adding 'moleculekit/projections/metricshell.py'
2022-10-21T07:42:38,740   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2022-10-21T07:42:38,742   adding 'moleculekit/projections/metrictmscore.py'
2022-10-21T07:42:38,743   adding 'moleculekit/projections/projection.py'
2022-10-21T07:42:38,744   adding 'moleculekit/projections/util.py'
2022-10-21T07:42:38,746   adding 'moleculekit/share/ALA.cif'
2022-10-21T07:42:38,748   adding 'moleculekit/share/backbone.cif'
2022-10-21T07:42:38,749   adding 'moleculekit/share/atomselect/atomselect.json'
2022-10-21T07:42:38,754   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2022-10-21T07:42:38,756   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2022-10-21T07:42:38,757   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2022-10-21T07:42:38,758   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2022-10-21T07:42:38,759   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2022-10-21T07:42:38,760   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2022-10-21T07:42:38,762   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2022-10-21T07:42:38,763   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2022-10-21T07:42:38,764   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2022-10-21T07:42:38,765   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2022-10-21T07:42:38,766   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2022-10-21T07:42:38,767   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2022-10-21T07:42:38,768   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2022-10-21T07:42:38,770   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2022-10-21T07:42:38,771   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2022-10-21T07:42:38,772   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2022-10-21T07:42:38,773   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2022-10-21T07:42:38,774   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2022-10-21T07:42:38,775   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2022-10-21T07:42:38,777   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2022-10-21T07:42:38,791   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2022-10-21T07:42:38,792   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2022-10-21T07:42:38,794   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2022-10-21T07:42:38,795   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2022-10-21T07:42:38,796   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2022-10-21T07:42:38,797   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2022-10-21T07:42:38,798   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2022-10-21T07:42:38,800   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2022-10-21T07:42:38,801   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2022-10-21T07:42:38,802   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2022-10-21T07:42:38,803   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2022-10-21T07:42:38,804   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2022-10-21T07:42:38,805   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2022-10-21T07:42:38,806   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2022-10-21T07:42:38,807   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2022-10-21T07:42:38,808   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2022-10-21T07:42:38,810   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2022-10-21T07:42:38,811   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2022-10-21T07:42:38,812   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2022-10-21T07:42:38,813   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2022-10-21T07:42:38,814   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2022-10-21T07:42:38,815   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2022-10-21T07:42:38,817   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2022-10-21T07:42:38,818   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2022-10-21T07:42:38,819   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2022-10-21T07:42:38,820   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2022-10-21T07:42:38,822   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2022-10-21T07:42:38,823   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2022-10-21T07:42:38,824   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2022-10-21T07:42:38,825   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2022-10-21T07:42:38,826   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2022-10-21T07:42:38,827   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2022-10-21T07:42:38,829   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2022-10-21T07:42:38,830   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2022-10-21T07:42:38,831   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2022-10-21T07:42:38,832   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2022-10-21T07:42:38,833   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2022-10-21T07:42:38,834   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2022-10-21T07:42:38,835   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2022-10-21T07:42:38,836   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2022-10-21T07:42:38,837   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2022-10-21T07:42:38,839   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2022-10-21T07:42:38,840   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2022-10-21T07:42:38,841   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2022-10-21T07:42:38,842   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2022-10-21T07:42:38,843   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2022-10-21T07:42:38,844   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2022-10-21T07:42:38,845   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2022-10-21T07:42:38,847   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2022-10-21T07:42:38,848   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2022-10-21T07:42:38,849   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2022-10-21T07:42:38,850   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2022-10-21T07:42:38,851   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2022-10-21T07:42:38,852   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2022-10-21T07:42:38,854   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2022-10-21T07:42:38,855   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2022-10-21T07:42:38,856   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2022-10-21T07:42:38,857   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2022-10-21T07:42:38,858   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2022-10-21T07:42:38,859   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2022-10-21T07:42:38,860   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2022-10-21T07:42:38,862   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2022-10-21T07:42:38,863   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2022-10-21T07:42:38,864   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2022-10-21T07:42:38,865   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2022-10-21T07:42:38,866   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2022-10-21T07:42:38,868   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2022-10-21T07:42:38,869   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2022-10-21T07:42:38,870   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2022-10-21T07:42:38,871   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2022-10-21T07:42:38,872   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2022-10-21T07:42:38,873   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2022-10-21T07:42:38,875   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2022-10-21T07:42:38,876   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2022-10-21T07:42:38,877   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2022-10-21T07:42:38,878   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2022-10-21T07:42:38,880   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2022-10-21T07:42:38,881   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2022-10-21T07:42:38,882   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2022-10-21T07:42:38,883   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2022-10-21T07:42:38,884   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2022-10-21T07:42:38,885   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2022-10-21T07:42:38,887   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2022-10-21T07:42:38,888   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2022-10-21T07:42:38,889   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2022-10-21T07:42:38,890   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2022-10-21T07:42:38,891   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2022-10-21T07:42:38,893   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2022-10-21T07:42:38,894   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2022-10-21T07:42:38,895   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2022-10-21T07:42:38,896   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2022-10-21T07:42:38,897   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2022-10-21T07:42:38,898   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2022-10-21T07:42:38,900   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2022-10-21T07:42:38,901   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2022-10-21T07:42:38,902   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2022-10-21T07:42:38,903   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2022-10-21T07:42:38,905   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2022-10-21T07:42:38,906   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2022-10-21T07:42:38,907   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2022-10-21T07:42:38,908   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2022-10-21T07:42:38,909   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2022-10-21T07:42:38,911   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2022-10-21T07:42:38,912   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2022-10-21T07:42:38,913   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2022-10-21T07:42:38,914   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2022-10-21T07:42:38,915   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2022-10-21T07:42:38,917   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2022-10-21T07:42:38,918   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2022-10-21T07:42:38,919   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2022-10-21T07:42:38,920   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2022-10-21T07:42:38,921   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2022-10-21T07:42:38,923   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2022-10-21T07:42:38,924   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2022-10-21T07:42:38,925   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2022-10-21T07:42:38,927   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2022-10-21T07:42:38,928   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2022-10-21T07:42:38,929   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2022-10-21T07:42:38,930   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2022-10-21T07:42:38,931   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2022-10-21T07:42:38,933   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2022-10-21T07:42:38,934   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2022-10-21T07:42:38,935   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2022-10-21T07:42:38,936   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2022-10-21T07:42:38,937   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2022-10-21T07:42:38,939   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2022-10-21T07:42:38,940   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2022-10-21T07:42:38,941   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2022-10-21T07:42:38,942   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2022-10-21T07:42:38,943   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2022-10-21T07:42:38,944   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2022-10-21T07:42:38,945   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2022-10-21T07:42:38,947   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2022-10-21T07:42:38,948   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2022-10-21T07:42:38,949   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2022-10-21T07:42:38,951   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2022-10-21T07:42:38,952   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2022-10-21T07:42:38,953   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2022-10-21T07:42:38,954   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2022-10-21T07:42:38,955   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2022-10-21T07:42:38,957   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2022-10-21T07:42:38,958   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2022-10-21T07:42:38,959   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2022-10-21T07:42:38,960   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2022-10-21T07:42:38,961   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2022-10-21T07:42:38,962   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2022-10-21T07:42:38,964   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2022-10-21T07:42:38,965   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2022-10-21T07:42:38,966   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2022-10-21T07:42:38,968   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2022-10-21T07:42:38,969   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2022-10-21T07:42:38,970   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2022-10-21T07:42:38,971   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2022-10-21T07:42:38,972   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2022-10-21T07:42:38,974   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2022-10-21T07:42:38,975   adding 'moleculekit/smallmol/__init__.py'
2022-10-21T07:42:38,980   adding 'moleculekit/smallmol/smallmol.py'
2022-10-21T07:42:38,983   adding 'moleculekit/smallmol/smallmollib.py'
2022-10-21T07:42:38,985   adding 'moleculekit/smallmol/test_smallmol.py'
2022-10-21T07:42:38,986   adding 'moleculekit/smallmol/test_smallmollib.py'
2022-10-21T07:42:38,988   adding 'moleculekit/smallmol/util.py'
2022-10-21T07:42:38,990   adding 'moleculekit/smallmol/tools/__init__.py'
2022-10-21T07:42:38,992   adding 'moleculekit/smallmol/tools/clustering.py'
2022-10-21T07:42:38,993   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2022-10-21T07:42:38,995   adding 'moleculekit/smallmol/tools/test_tools.py'
2022-10-21T07:42:39,066   adding 'moleculekit/tmalign/tmalign_util.cpp'
2022-10-21T07:42:39,073   adding 'moleculekit/tmalign/tmalign_util.pyx'
2022-10-21T07:42:39,074   adding 'moleculekit/tmalign/tmalignlib.pxd'
2022-10-21T07:42:39,076   adding 'moleculekit/tmalign/include/TMAlign.h'
2022-10-21T07:42:39,094   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2022-10-21T07:42:39,097   adding 'moleculekit/tools/__init__.py'
2022-10-21T07:42:39,099   adding 'moleculekit/tools/atomtyper.py'
2022-10-21T07:42:39,101   adding 'moleculekit/tools/autosegment.py'
2022-10-21T07:42:39,103   adding 'moleculekit/tools/crystalpacking.py'
2022-10-21T07:42:39,106   adding 'moleculekit/tools/detect.py'
2022-10-21T07:42:39,108   adding 'moleculekit/tools/docking.py'
2022-10-21T07:42:39,110   adding 'moleculekit/tools/graphalignment.py'
2022-10-21T07:42:39,111   adding 'moleculekit/tools/hhblitsprofile.py'
2022-10-21T07:42:39,112   adding 'moleculekit/tools/moleculechecks.py'
2022-10-21T07:42:39,118   adding 'moleculekit/tools/preparation.py'
2022-10-21T07:42:39,121   adding 'moleculekit/tools/preparation_customres.py'
2022-10-21T07:42:39,123   adding 'moleculekit/tools/sequencestructuralalignment.py'
2022-10-21T07:42:39,126   adding 'moleculekit/tools/voxeldescriptors.py'
2022-10-21T07:42:39,128   adding 'moleculekit/tools/obabel_tools/__init__.py'
2022-10-21T07:42:39,129   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2022-10-21T07:42:39,199   adding 'moleculekit/wrapping/wrapping.cpp'
2022-10-21T07:42:39,206   adding 'moleculekit/wrapping/wrapping.pyx'
2022-10-21T07:42:39,277   adding 'moleculekit/xtc_utils/xtc.c'
2022-10-21T07:42:39,284   adding 'moleculekit/xtc_utils/xtc.pyx'
2022-10-21T07:42:39,285   adding 'moleculekit/xtc_utils/xtclib.pxd'
2022-10-21T07:42:39,289   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2022-10-21T07:42:39,290   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2022-10-21T07:42:39,291   adding 'moleculekit/xtc_utils/include/xtc.h'
2022-10-21T07:42:39,298   adding 'moleculekit/xtc_utils/src/xdrfile.c'
2022-10-21T07:42:39,300   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.c'
2022-10-21T07:42:39,302   adding 'moleculekit/xtc_utils/src/xtc.c'
2022-10-21T07:42:39,305   adding 'moleculekit-1.5.0.dist-info/LICENSE'
2022-10-21T07:42:39,306   adding 'moleculekit-1.5.0.dist-info/METADATA'
2022-10-21T07:42:39,307   adding 'moleculekit-1.5.0.dist-info/WHEEL'
2022-10-21T07:42:39,308   adding 'moleculekit-1.5.0.dist-info/top_level.txt'
2022-10-21T07:42:39,313   adding 'moleculekit-1.5.0.dist-info/RECORD'
2022-10-21T07:42:39,425   removing build/bdist.linux-armv7l/wheel
2022-10-21T07:42:39,807   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2022-10-21T07:42:39,962   Created wheel for moleculekit: filename=moleculekit-1.5.0-cp39-cp39-linux_armv7l.whl size=7184306 sha256=2335de6704a494b118481ac750c91de9befd1a0e12629fd0d7b20ca020ab582f
2022-10-21T07:42:39,963   Stored in directory: /tmp/pip-ephem-wheel-cache-pixlj8zk/wheels/d4/cd/44/1082ef23927cbd2c6ebd2bebea6da166d17ca68047a0308cc6
2022-10-21T07:42:39,989 Successfully built moleculekit
2022-10-21T07:42:40,195 Removed build tracker: '/tmp/pip-build-tracker-4gjg_3_t'