2022-10-23T03:38:31,640 Created temporary directory: /tmp/pip-ephem-wheel-cache-eh62xsml 2022-10-23T03:38:31,646 Created temporary directory: /tmp/pip-build-tracker-zdo86yt6 2022-10-23T03:38:31,646 Initialized build tracking at /tmp/pip-build-tracker-zdo86yt6 2022-10-23T03:38:31,647 Created build tracker: /tmp/pip-build-tracker-zdo86yt6 2022-10-23T03:38:31,647 Entered build tracker: /tmp/pip-build-tracker-zdo86yt6 2022-10-23T03:38:31,648 Created temporary directory: /tmp/pip-wheel-k6jlecpn 2022-10-23T03:38:31,720 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-23T03:38:31,729 2 location(s) to search for versions of wwpdb-utils-align: 2022-10-23T03:38:31,729 * https://pypi.org/simple/wwpdb-utils-align/ 2022-10-23T03:38:31,729 * https://www.piwheels.org/simple/wwpdb-utils-align/ 2022-10-23T03:38:31,730 Fetching project page and analyzing links: https://pypi.org/simple/wwpdb-utils-align/ 2022-10-23T03:38:31,731 Getting page https://pypi.org/simple/wwpdb-utils-align/ 2022-10-23T03:38:31,735 Found index url https://pypi.org/simple 2022-10-23T03:38:31,855 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/1d/a8/d3ad903296b72c5f03757660b34de9d74cad8a12250d69ccd6bf84c041db/wwpdb.utils.align-0.10-cp27-cp27m-macosx_10_13_x86_64.whl#sha256=56b7658b77116d1a055e9cbc31cce46a5deaa3ccea83df01cc6ed681694d7a3d (from https://pypi.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:31,856 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/b9/a5/c318a98f0700364ef2a8b8555676e1a8eda80a0d58296c7e6de6c873e1f0/wwpdb.utils.align-0.10-cp27-cp27m-macosx_10_14_x86_64.whl#sha256=99ae97b9c58dc1107824acd7ed074161fd22384920c449835b9d4c702a44ab6f (from https://pypi.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:31,857 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/7f/d7/ae5e2f0cbd80c442e6af6451e4d680d248088c3a623f733bbfeef1e31ae0/wwpdb.utils.align-0.10-cp36-cp36m-macosx_10_13_x86_64.whl#sha256=087f8ca445d1b21cee3bd9c51ad81a09b9a1992b6984cd11f7579d52f16403de (from https://pypi.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:31,857 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/49/0d/795e27fb08a7c7f8a34672da6b4a8164ad8d62956d920bf758f45dd9f41e/wwpdb.utils.align-0.10-cp37-cp37m-macosx_10_13_x86_64.whl#sha256=6bfc72ef2c9f6d0413c31bf1aeeff1eddfa9c119570c10ac46c12307c86ae1e9 (from https://pypi.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:31,858 Found link https://files.pythonhosted.org/packages/25/52/f224d04f128b12c37559d523f5e11dc561b28d4c1fec7853c94cd4377bb2/wwpdb.utils.align-0.10.tar.gz#sha256=93cc5ba1285f1aede35d52e77cd1fcb440e9db9ccb5e50c29ff60054129e86f1 (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.10 2022-10-23T03:38:31,859 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/3a/ae/32a9cd447324404c88c9207e4b62f224bb7840267cfced51493ae0b3d59b/wwpdb.utils.align-0.11-cp27-cp27m-macosx_10_14_x86_64.whl#sha256=8dffd916a3286bea63c0c29b8e885c6fd7985e668e21a58bacbe4d3350efddc9 (from https://pypi.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:31,859 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/84/79/cab96cf67ab9c0d3d8ce96d53478dca7b2bbe55540ff19c08861b2a6b6c4/wwpdb.utils.align-0.11-cp27-cp27m-macosx_10_15_x86_64.whl#sha256=9833b79ebec2f9397703c81253d2ee4ff2de08dfae9a24350ad0a6114646e64e (from https://pypi.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:31,860 Found link https://files.pythonhosted.org/packages/fb/ac/f6df071644e3021037507a3eb4ed87086445132665c6bd79f6c709861a93/wwpdb.utils.align-0.11.tar.gz#sha256=fafd096b39fcd1fcfdf8e3139b461be7d7fb146db701ec0d5dbeaf0f855f2b95 (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11 2022-10-23T03:38:31,861 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/6c/d1/b93a4246b5a1f02fb222bfe5813b0a82f43527255ccd23cfd1081dba83bb/wwpdb.utils.align-0.11.1-cp27-cp27m-macosx_10_15_x86_64.whl#sha256=ade42d77985d315551955e5a6d99f6fbfa1115c4f0b75ee23ef3d6de97f48698 (from https://pypi.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:31,861 Found link https://files.pythonhosted.org/packages/78/be/2a83166158e9100dffabf3da0bb67f0ddc3b480497ce96a11b1f02686a0d/wwpdb.utils.align-0.11.1.tar.gz#sha256=764b58539c56911c2c78c2752016daf28237f40a83284cb421170890e8c93a70 (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.1 2022-10-23T03:38:31,862 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/93/65/44b1fd0ecae22a993f50d031d9d6a8a0d7118ebfd7967a4f5d2f40bad6b6/wwpdb.utils.align-0.11.2-cp27-cp27m-macosx_10_15_x86_64.whl#sha256=e52140423d962ab8108e42de6b4b49e96f419bb9c330c91db1ffb458f1fd5a9a (from https://pypi.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:31,863 Found link https://files.pythonhosted.org/packages/f3/35/58b7f11238cba57e152e5c536f770d29799cfed22a601b9a422d5d2fa296/wwpdb.utils.align-0.11.2.tar.gz#sha256=34e513ffe6369c8533275a4106022296dfe8a8091e4eb4a9b4de82e7a7d7a7d4 (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.2 2022-10-23T03:38:31,863 Found link https://files.pythonhosted.org/packages/de/1d/902a35761181022388bd36741f99060c6c68cf68c8a9d3e54b1af6f7e22b/wwpdb.utils.align-0.11.3.tar.gz#sha256=ea9e37f005661f3fd9bef0c92bbd054828b83ca730f413698d75b89b16f36095 (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.3 2022-10-23T03:38:31,864 Fetching project page and analyzing links: https://www.piwheels.org/simple/wwpdb-utils-align/ 2022-10-23T03:38:31,865 Getting page https://www.piwheels.org/simple/wwpdb-utils-align/ 2022-10-23T03:38:31,867 Found index url https://www.piwheels.org/simple 2022-10-23T03:38:32,103 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.3-cp37-cp37m-linux_armv7l.whl#sha256=cc0551c7fb1c3a128a2be475aec04407863f9f02ebe18ee237788f371b9a8e74 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:32,103 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.3-cp37-cp37m-linux_armv6l.whl#sha256=cc0551c7fb1c3a128a2be475aec04407863f9f02ebe18ee237788f371b9a8e74 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:32,104 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.2-cp39-cp39-linux_armv7l.whl#sha256=360a99b82a482a51a2658578fdd61f9fc5910cc5c4184b09a66ad2b5de1d7d36 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:32,104 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.2-cp39-cp39-linux_armv6l.whl#sha256=360a99b82a482a51a2658578fdd61f9fc5910cc5c4184b09a66ad2b5de1d7d36 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:32,105 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.2-cp37-cp37m-linux_armv7l.whl#sha256=72597662f3a66db03dbebf58cb5b0f53c7f4d4c2da1728c8d5548872a0bc3cc8 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:32,105 Skipping link: No binaries permitted for wwpdb-utils-align: 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https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp37-cp37m-linux_armv7l.whl#sha256=dacd2265ff97e73728f1e856657fb1099e938b0a1ae4759ae0c7ba189b52f540 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:32,117 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp37-cp37m-linux_armv6l.whl#sha256=dacd2265ff97e73728f1e856657fb1099e938b0a1ae4759ae0c7ba189b52f540 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-10-23T03:38:32,117 Skipping link: not a file: https://www.piwheels.org/simple/wwpdb-utils-align/ 2022-10-23T03:38:32,118 Skipping link: not a file: https://pypi.org/simple/wwpdb-utils-align/ 2022-10-23T03:38:32,164 Given no hashes to check 1 links for project 'wwpdb-utils-align': discarding no candidates 2022-10-23T03:38:32,206 Collecting wwpdb-utils-align==0.11.3 2022-10-23T03:38:32,211 Created temporary directory: /tmp/pip-unpack-mxm2_d25 2022-10-23T03:38:32,303 Downloading wwpdb.utils.align-0.11.3.tar.gz (608 kB) 2022-10-23T03:38:33,577 Added wwpdb-utils-align==0.11.3 from https://files.pythonhosted.org/packages/de/1d/902a35761181022388bd36741f99060c6c68cf68c8a9d3e54b1af6f7e22b/wwpdb.utils.align-0.11.3.tar.gz#sha256=ea9e37f005661f3fd9bef0c92bbd054828b83ca730f413698d75b89b16f36095 to build tracker '/tmp/pip-build-tracker-zdo86yt6' 2022-10-23T03:38:33,581 Running setup.py (path:/tmp/pip-wheel-k6jlecpn/wwpdb-utils-align_e025e4cfe3c946099eb4bb41602e2508/setup.py) egg_info for package wwpdb-utils-align 2022-10-23T03:38:33,582 Created temporary directory: /tmp/pip-pip-egg-info-yd0sjce0 2022-10-23T03:38:33,582 Preparing metadata (setup.py): started 2022-10-23T03:38:33,584 Running command python setup.py egg_info 2022-10-23T03:38:43,115 running egg_info 2022-10-23T03:38:43,121 creating /tmp/pip-pip-egg-info-yd0sjce0/wwpdb.utils.align.egg-info 2022-10-23T03:38:43,819 writing /tmp/pip-pip-egg-info-yd0sjce0/wwpdb.utils.align.egg-info/PKG-INFO 2022-10-23T03:38:44,380 writing dependency_links to /tmp/pip-pip-egg-info-yd0sjce0/wwpdb.utils.align.egg-info/dependency_links.txt 2022-10-23T03:38:47,178 writing requirements to /tmp/pip-pip-egg-info-yd0sjce0/wwpdb.utils.align.egg-info/requires.txt 2022-10-23T03:38:47,743 writing top-level names to /tmp/pip-pip-egg-info-yd0sjce0/wwpdb.utils.align.egg-info/top_level.txt 2022-10-23T03:38:47,746 writing manifest file '/tmp/pip-pip-egg-info-yd0sjce0/wwpdb.utils.align.egg-info/SOURCES.txt' 2022-10-23T03:38:48,731 reading manifest file '/tmp/pip-pip-egg-info-yd0sjce0/wwpdb.utils.align.egg-info/SOURCES.txt' 2022-10-23T03:38:48,734 reading manifest template 'MANIFEST.in' 2022-10-23T03:38:48,784 adding license file 'LICENSE' 2022-10-23T03:38:48,806 writing manifest file '/tmp/pip-pip-egg-info-yd0sjce0/wwpdb.utils.align.egg-info/SOURCES.txt' 2022-10-23T03:38:49,036 Preparing metadata (setup.py): finished with status 'done' 2022-10-23T03:38:49,046 Source in /tmp/pip-wheel-k6jlecpn/wwpdb-utils-align_e025e4cfe3c946099eb4bb41602e2508 has version 0.11.3, which satisfies requirement wwpdb-utils-align==0.11.3 from https://files.pythonhosted.org/packages/de/1d/902a35761181022388bd36741f99060c6c68cf68c8a9d3e54b1af6f7e22b/wwpdb.utils.align-0.11.3.tar.gz#sha256=ea9e37f005661f3fd9bef0c92bbd054828b83ca730f413698d75b89b16f36095 2022-10-23T03:38:49,048 Removed wwpdb-utils-align==0.11.3 from https://files.pythonhosted.org/packages/de/1d/902a35761181022388bd36741f99060c6c68cf68c8a9d3e54b1af6f7e22b/wwpdb.utils.align-0.11.3.tar.gz#sha256=ea9e37f005661f3fd9bef0c92bbd054828b83ca730f413698d75b89b16f36095 from build tracker '/tmp/pip-build-tracker-zdo86yt6' 2022-10-23T03:38:49,057 Created temporary directory: /tmp/pip-unpack-c3gdrzh3 2022-10-23T03:38:49,059 Building wheels for collected packages: wwpdb-utils-align 2022-10-23T03:38:49,068 Created temporary directory: /tmp/pip-wheel-g3yinyq7 2022-10-23T03:38:49,069 Building wheel for wwpdb-utils-align (setup.py): started 2022-10-23T03:38:49,071 Destination directory: /tmp/pip-wheel-g3yinyq7 2022-10-23T03:38:49,071 Running command python setup.py bdist_wheel 2022-10-23T03:38:58,254 running bdist_wheel 2022-10-23T03:38:58,640 running build 2022-10-23T03:38:58,641 running build_py 2022-10-23T03:38:59,318 creating build 2022-10-23T03:38:59,319 creating build/lib.linux-armv7l-cpython-39 2022-10-23T03:38:59,321 creating build/lib.linux-armv7l-cpython-39/wwpdb 2022-10-23T03:38:59,323 copying wwpdb/__init__.py -> build/lib.linux-armv7l-cpython-39/wwpdb 2022-10-23T03:38:59,329 creating build/lib.linux-armv7l-cpython-39/wwpdb/utils 2022-10-23T03:38:59,331 copying wwpdb/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/wwpdb/utils 2022-10-23T03:38:59,336 creating build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-10-23T03:38:59,338 copying wwpdb/utils/align/SequenceReferenceData.py -> build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-10-23T03:38:59,343 copying wwpdb/utils/align/__init__.py -> build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-10-23T03:38:59,346 copying wwpdb/utils/align/SequenceExamples.py -> build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-10-23T03:38:59,372 running build_ext 2022-10-23T03:38:59,527 ------ WARNING could not locate python library 2022-10-23T03:38:59,534 ------------- setup.py ----------------- 2022-10-23T03:38:59,534 Extension source path /tmp/pip-wheel-k6jlecpn/wwpdb-utils-align_e025e4cfe3c946099eb4bb41602e2508 2022-10-23T03:38:59,535 CMAKE_ARGS ['-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/tmp/pip-wheel-k6jlecpn/wwpdb-utils-align_e025e4cfe3c946099eb4bb41602e2508/build/lib.linux-armv7l-cpython-39/wwpdb/utils/align', '-DPYTHON_EXECUTABLE=/usr/bin/python3', '-DPYTHON_INCLUDE_DIR=/usr/include/python3.9', '-DCMAKE_BUILD_TYPE=Release'] 2022-10-23T03:38:59,535 self.build_temp build/temp.linux-armv7l-cpython-39 2022-10-23T03:38:59,535 extdir /tmp/pip-wheel-k6jlecpn/wwpdb-utils-align_e025e4cfe3c946099eb4bb41602e2508/build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-10-23T03:38:59,536 ext.name wwpdb.utils.align.alignlib 2022-10-23T03:38:59,536 sys.executable /usr/bin/python3 2022-10-23T03:38:59,536 sys.exec_prefix /usr 2022-10-23T03:38:59,537 CXXFLAGS -DVERSION_INFO=\"0.11.3\" 2022-10-23T03:39:00,351 -- The C compiler identification is GNU 10.2.1 2022-10-23T03:39:01,135 -- The CXX compiler identification is GNU 10.2.1 2022-10-23T03:39:01,917 -- Detecting C compiler ABI info 2022-10-23T03:39:02,734 -- Detecting C compiler ABI info - done 2022-10-23T03:39:02,878 -- Check for working C compiler: /usr/bin/cc - skipped 2022-10-23T03:39:02,882 -- Detecting C compile features 2022-10-23T03:39:02,888 -- Detecting C compile features - done 2022-10-23T03:39:02,959 -- Detecting CXX compiler ABI info 2022-10-23T03:39:03,929 -- Detecting CXX compiler ABI info - done 2022-10-23T03:39:04,080 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2022-10-23T03:39:04,084 -- Detecting CXX compile features 2022-10-23T03:39:04,091 -- Detecting CXX compile features - done 2022-10-23T03:39:04,382 -- Found PythonInterp: /usr/bin/python3 (found version "3.9.2") 2022-10-23T03:39:06,166 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so (found version "3.9.2") 2022-10-23T03:39:06,167 -- Python include path set to /usr/include/python3.9 2022-10-23T03:39:09,172 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2022-10-23T03:39:09,218 -- Performing Test HAS_CPP14_FLAG 2022-10-23T03:39:10,167 -- Performing Test HAS_CPP14_FLAG - Success 2022-10-23T03:39:10,212 -- pybind11 v2.3.dev0 2022-10-23T03:39:10,215 -- Compiler flags -Wall -Wno-unused-variable -Wno-unused-value -Wno-unused-but-set-variable -Wno-deprecated-declarations -DBIG_ENDIAN_PLATFORM -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -fno-common -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -flto 2022-10-23T03:39:10,215 -- ---CMAKE MODULE PATH - 2022-10-23T03:39:10,216 -- ---CMAKE SOURCE DIR - /tmp/pip-wheel-k6jlecpn/wwpdb-utils-align_e025e4cfe3c946099eb4bb41602e2508 2022-10-23T03:39:10,216 -- ---CMAKE PROJECT DIR - /tmp/pip-wheel-k6jlecpn/wwpdb-utils-align_e025e4cfe3c946099eb4bb41602e2508 2022-10-23T03:39:10,303 -- Performing Test HAS_FLTO 2022-10-23T03:39:11,709 -- Performing Test HAS_FLTO - Success 2022-10-23T03:39:11,713 -- LTO enabled 2022-10-23T03:39:11,716 STATUS,---ALL DONE WITH CMAKE 2022-10-23T03:39:11,724 -- Configuring done 2022-10-23T03:39:11,982 -- Generating done 2022-10-23T03:39:12,021 -- Build files have been written to: /tmp/pip-wheel-k6jlecpn/wwpdb-utils-align_e025e4cfe3c946099eb4bb41602e2508/build/temp.linux-armv7l-cpython-39 2022-10-23T03:39:12,521 Scanning dependencies of target align 2022-10-23T03:39:12,645 [ 12%] Building CXX object CMakeFiles/align.dir/modules/PairwiseAlign/src/PairwiseAlign.C.o 2022-10-23T03:39:12,645 [ 12%] Building CXX object CMakeFiles/align.dir/modules/PairwiseAlign/src/AlignUtil.C.o 2022-10-23T03:39:15,090 [ 18%] Building CXX object CMakeFiles/align.dir/modules/PairwiseAlign/src/PseudoMultiAlign.C.o 2022-10-23T03:39:22,422 [ 18%] Built target align 2022-10-23T03:39:22,545 Scanning dependencies of target align-all 2022-10-23T03:39:22,661 [ 25%] Linking CXX static library lib/libalign-all.a 2022-10-23T03:39:23,048 [ 25%] Built target align-all 2022-10-23T03:39:23,183 Scanning dependencies of target align_test_4 2022-10-23T03:39:23,309 [ 31%] Building CXX object CMakeFiles/align_test_4.dir/modules/PairwiseAlign/test/testRefSeqAlign.C.o 2022-10-23T03:39:23,439 Scanning dependencies of target alignlib 2022-10-23T03:39:23,591 [ 37%] Building CXX object CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapPairwiseAlign.cpp.o 2022-10-23T03:39:26,970 [ 43%] Linking CXX executable bin/align_test_4 2022-10-23T03:39:38,389 [ 43%] Built target align_test_4 2022-10-23T03:39:38,534 Scanning dependencies of target align_test_1 2022-10-23T03:39:38,666 [ 50%] Building CXX object CMakeFiles/align_test_1.dir/modules/PairwiseAlign/test/testPairwiseAlign.C.o 2022-10-23T03:39:44,150 [ 56%] Linking CXX executable bin/align_test_1 2022-10-23T03:39:46,301 [ 62%] Building CXX object CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapPseudoMultiAlign.cpp.o 2022-10-23T03:39:59,295 [ 62%] Built target align_test_1 2022-10-23T03:39:59,444 Scanning dependencies of target align_test_3 2022-10-23T03:39:59,582 [ 68%] Building CXX object CMakeFiles/align_test_3.dir/modules/PairwiseAlign/test/testPseudoMultiAlign.C.o 2022-10-23T03:40:02,377 [ 75%] Linking CXX executable bin/align_test_3 2022-10-23T03:40:07,915 [ 81%] Building CXX object CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapalignlib.cpp.o 2022-10-23T03:40:13,271 [ 81%] Built target align_test_3 2022-10-23T03:40:13,409 Scanning dependencies of target align_test_2 2022-10-23T03:40:13,537 [ 87%] Building CXX object CMakeFiles/align_test_2.dir/modules/PairwiseAlign/test/testPairwiseAlignZF.C.o 2022-10-23T03:40:18,403 [ 93%] Linking CXX executable bin/align_test_2 2022-10-23T03:40:20,361 [100%] Linking CXX shared module ../lib.linux-armv7l-cpython-39/wwpdb/utils/align/alignlib.cpython-39-arm-linux-gnueabihf.so 2022-10-23T03:40:28,965 [100%] Built target align_test_2 2022-10-23T03:41:02,487 [100%] Built target alignlib 2022-10-23T03:41:03,401 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-10-23T03:41:03,402 warnings.warn( 2022-10-23T03:41:04,082 installing to build/bdist.linux-armv7l/wheel 2022-10-23T03:41:04,083 running install 2022-10-23T03:41:04,146 running install_lib 2022-10-23T03:41:04,822 creating build/bdist.linux-armv7l 2022-10-23T03:41:04,823 creating build/bdist.linux-armv7l/wheel 2022-10-23T03:41:04,827 creating build/bdist.linux-armv7l/wheel/wwpdb 2022-10-23T03:41:04,829 copying build/lib.linux-armv7l-cpython-39/wwpdb/__init__.py -> build/bdist.linux-armv7l/wheel/wwpdb 2022-10-23T03:41:04,835 creating build/bdist.linux-armv7l/wheel/wwpdb/utils 2022-10-23T03:41:04,838 creating build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-10-23T03:41:04,840 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/align/SequenceReferenceData.py -> build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-10-23T03:41:04,844 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/align/alignlib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-10-23T03:41:04,859 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/align/__init__.py -> build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-10-23T03:41:04,862 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/align/SequenceExamples.py -> build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-10-23T03:41:04,870 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/wwpdb/utils 2022-10-23T03:41:04,872 running install_egg_info 2022-10-23T03:41:06,265 running egg_info 2022-10-23T03:41:06,949 writing wwpdb.utils.align.egg-info/PKG-INFO 2022-10-23T03:41:07,497 writing dependency_links to wwpdb.utils.align.egg-info/dependency_links.txt 2022-10-23T03:41:10,319 writing requirements to wwpdb.utils.align.egg-info/requires.txt 2022-10-23T03:41:10,870 writing top-level names to wwpdb.utils.align.egg-info/top_level.txt 2022-10-23T03:41:11,017 reading manifest file 'wwpdb.utils.align.egg-info/SOURCES.txt' 2022-10-23T03:41:11,090 reading manifest template 'MANIFEST.in' 2022-10-23T03:41:11,124 adding license file 'LICENSE' 2022-10-23T03:41:11,153 writing manifest file 'wwpdb.utils.align.egg-info/SOURCES.txt' 2022-10-23T03:41:11,157 Copying wwpdb.utils.align.egg-info to build/bdist.linux-armv7l/wheel/wwpdb.utils.align-0.11.3-py3.9.egg-info 2022-10-23T03:41:11,181 running install_scripts 2022-10-23T03:41:11,353 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-23T03:41:11,362 creating build/bdist.linux-armv7l/wheel/wwpdb.utils.align-0.11.3.dist-info/WHEEL 2022-10-23T03:41:11,367 creating '/tmp/pip-wheel-g3yinyq7/wwpdb.utils.align-0.11.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-23T03:41:11,371 adding 'wwpdb/__init__.py' 2022-10-23T03:41:11,375 adding 'wwpdb/utils/__init__.py' 2022-10-23T03:41:11,391 adding 'wwpdb/utils/align/SequenceExamples.py' 2022-10-23T03:41:11,395 adding 'wwpdb/utils/align/SequenceReferenceData.py' 2022-10-23T03:41:11,397 adding 'wwpdb/utils/align/__init__.py' 2022-10-23T03:41:11,516 adding 'wwpdb/utils/align/alignlib.cpython-39-arm-linux-gnueabihf.so' 2022-10-23T03:41:11,524 adding 'wwpdb.utils.align-0.11.3.dist-info/LICENSE' 2022-10-23T03:41:11,526 adding 'wwpdb.utils.align-0.11.3.dist-info/METADATA' 2022-10-23T03:41:11,528 adding 'wwpdb.utils.align-0.11.3.dist-info/WHEEL' 2022-10-23T03:41:11,530 adding 'wwpdb.utils.align-0.11.3.dist-info/top_level.txt' 2022-10-23T03:41:11,532 adding 'wwpdb.utils.align-0.11.3.dist-info/RECORD' 2022-10-23T03:41:11,539 removing build/bdist.linux-armv7l/wheel 2022-10-23T03:41:12,029 Building wheel for wwpdb-utils-align (setup.py): finished with status 'done' 2022-10-23T03:41:12,041 Created wheel for wwpdb-utils-align: filename=wwpdb.utils.align-0.11.3-cp39-cp39-linux_armv7l.whl size=107829 sha256=196d19cb25493a2aa18c302a46622255482c399dcc770f60ac81957881c46861 2022-10-23T03:41:12,043 Stored in directory: /tmp/pip-ephem-wheel-cache-eh62xsml/wheels/4a/ba/8e/11a0184584f6f75126dbc544508d31bb9cc0e9726bbe9c7148 2022-10-23T03:41:12,064 Successfully built wwpdb-utils-align 2022-10-23T03:41:12,080 Removed build tracker: '/tmp/pip-build-tracker-zdo86yt6'