2022-10-25T06:07:12,319 Created temporary directory: /tmp/pip-ephem-wheel-cache-bhg7s1r0 2022-10-25T06:07:12,322 Created temporary directory: /tmp/pip-build-tracker-xduh3zw2 2022-10-25T06:07:12,323 Initialized build tracking at /tmp/pip-build-tracker-xduh3zw2 2022-10-25T06:07:12,323 Created build tracker: /tmp/pip-build-tracker-xduh3zw2 2022-10-25T06:07:12,323 Entered build tracker: /tmp/pip-build-tracker-xduh3zw2 2022-10-25T06:07:12,323 Created temporary directory: /tmp/pip-wheel-__1v5734 2022-10-25T06:07:12,358 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-25T06:07:12,361 2 location(s) to search for versions of scib-metrics: 2022-10-25T06:07:12,361 * https://pypi.org/simple/scib-metrics/ 2022-10-25T06:07:12,361 * https://www.piwheels.org/simple/scib-metrics/ 2022-10-25T06:07:12,362 Fetching project page and analyzing links: https://pypi.org/simple/scib-metrics/ 2022-10-25T06:07:12,362 Getting page https://pypi.org/simple/scib-metrics/ 2022-10-25T06:07:12,364 Found index url https://pypi.org/simple 2022-10-25T06:07:12,502 Fetched page https://pypi.org/simple/scib-metrics/ as application/vnd.pypi.simple.v1+json 2022-10-25T06:07:12,505 Skipping link: No binaries permitted for scib-metrics: https://files.pythonhosted.org/packages/19/3a/450f9acd0a3f46ef7f63b8c8e80ddaa4768a68ab20973f32ba2b157028db/scib_metrics-0.0.2-py3-none-any.whl (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-25T06:07:12,505 Found link https://files.pythonhosted.org/packages/c5/50/28e2f87983f8dd1a576df8c5cc8b9a1f0cdcf0d8011d8acb849eeb9b99c5/scib_metrics-0.0.2.tar.gz (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8), version: 0.0.2 2022-10-25T06:07:12,506 Skipping link: No binaries permitted for scib-metrics: https://files.pythonhosted.org/packages/f4/37/d2461c6cde03c68c7f7395cc4186ae1ac6885af6ac68ece90f7b5e558274/scib_metrics-0.0.3-py3-none-any.whl (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-25T06:07:12,506 Found link https://files.pythonhosted.org/packages/ad/26/921a950abc20fe179822f7d485e3ca4e7768ed75096fcec955098b55d471/scib_metrics-0.0.3.tar.gz (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8), version: 0.0.3 2022-10-25T06:07:12,507 Skipping link: No binaries permitted for scib-metrics: https://files.pythonhosted.org/packages/3f/43/4ce2c2b757307b6515352f4bc37c47f0e63ae9008bec8a62a5d2822fee38/scib_metrics-0.0.4-py3-none-any.whl (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-25T06:07:12,507 Found link https://files.pythonhosted.org/packages/6f/e4/e3adc25171de6f5fef446056398f709cc597a4250a309fafd508d8a0ca3f/scib_metrics-0.0.4.tar.gz (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8), version: 0.0.4 2022-10-25T06:07:12,507 Skipping link: No binaries permitted for scib-metrics: https://files.pythonhosted.org/packages/2d/88/e1e99d0e4479e781273a57688ab55c13576c9389bd4da8a513aa64576ab0/scib_metrics-0.0.5-py3-none-any.whl (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-25T06:07:12,508 Found link https://files.pythonhosted.org/packages/b4/44/907778ae906671f0f9ba4b353c4ee9938e28348f697eae6bf33ddf95eaef/scib_metrics-0.0.5.tar.gz (from https://pypi.org/simple/scib-metrics/) (requires-python:>=3.8), version: 0.0.5 2022-10-25T06:07:12,508 Fetching project page and analyzing links: https://www.piwheels.org/simple/scib-metrics/ 2022-10-25T06:07:12,509 Getting page https://www.piwheels.org/simple/scib-metrics/ 2022-10-25T06:07:12,510 Found index url https://www.piwheels.org/simple 2022-10-25T06:07:12,711 Fetched page https://www.piwheels.org/simple/scib-metrics/ as text/html 2022-10-25T06:07:12,714 Skipping link: No binaries permitted for scib-metrics: https://www.piwheels.org/simple/scib-metrics/scib_metrics-0.0.4-py3-none-any.whl#sha256=cff7639af1e31e61e6c9fc8e0316cdd26dbcd650ccc644efd6d5cff8f592f3c0 (from https://www.piwheels.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-25T06:07:12,714 Skipping link: No binaries permitted for scib-metrics: https://www.piwheels.org/simple/scib-metrics/scib_metrics-0.0.3-py3-none-any.whl#sha256=6d24b5ba3b05a72514651add571af01ef90dad33d2d66575197aaed66947120b (from https://www.piwheels.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-25T06:07:12,715 Skipping link: No binaries permitted for scib-metrics: https://www.piwheels.org/simple/scib-metrics/scib_metrics-0.0.2-py3-none-any.whl#sha256=35372423c00264abcbe9c6c71ee44ffaf0a365047dd6329283cd3714f220743b (from https://www.piwheels.org/simple/scib-metrics/) (requires-python:>=3.8) 2022-10-25T06:07:12,715 Skipping link: not a file: https://www.piwheels.org/simple/scib-metrics/ 2022-10-25T06:07:12,715 Skipping link: not a file: https://pypi.org/simple/scib-metrics/ 2022-10-25T06:07:12,743 Given no hashes to check 1 links for project 'scib-metrics': discarding no candidates 2022-10-25T06:07:12,768 Collecting scib-metrics==0.0.5 2022-10-25T06:07:12,770 Created temporary directory: /tmp/pip-unpack-098rga4q 2022-10-25T06:07:13,000 Downloading scib_metrics-0.0.5.tar.gz (33 kB) 2022-10-25T06:07:13,103 Added scib-metrics==0.0.5 from https://files.pythonhosted.org/packages/b4/44/907778ae906671f0f9ba4b353c4ee9938e28348f697eae6bf33ddf95eaef/scib_metrics-0.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-xduh3zw2' 2022-10-25T06:07:13,108 Created temporary directory: /tmp/pip-build-env-prb7iht9 2022-10-25T06:07:13,117 Installing build dependencies: started 2022-10-25T06:07:13,118 Running command pip subprocess to install build dependencies 2022-10-25T06:07:14,308 Using pip 22.2.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-10-25T06:07:14,750 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-25T06:07:15,151 Collecting hatchling 2022-10-25T06:07:15,184 Using cached https://www.piwheels.org/simple/hatchling/hatchling-1.11.1-py3-none-any.whl (73 kB) 2022-10-25T06:07:15,309 Collecting pathspec>=0.10.1 2022-10-25T06:07:15,326 Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.10.1-py3-none-any.whl (27 kB) 2022-10-25T06:07:15,439 Collecting tomli>=1.2.2 2022-10-25T06:07:15,460 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2022-10-25T06:07:15,626 Collecting packaging>=21.3 2022-10-25T06:07:15,644 Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB) 2022-10-25T06:07:15,763 Collecting pluggy>=1.0.0 2022-10-25T06:07:15,781 Using cached https://www.piwheels.org/simple/pluggy/pluggy-1.0.0-py2.py3-none-any.whl (13 kB) 2022-10-25T06:07:15,936 Collecting editables>=0.3 2022-10-25T06:07:16,002 Using cached https://www.piwheels.org/simple/editables/editables-0.3-py3-none-any.whl (4.7 kB) 2022-10-25T06:07:16,262 Collecting pyparsing!=3.0.5,>=2.0.2 2022-10-25T06:07:16,284 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB) 2022-10-25T06:07:18,063 Installing collected packages: tomli, pyparsing, pluggy, pathspec, editables, packaging, hatchling 2022-10-25T06:07:19,100 Creating /tmp/pip-build-env-prb7iht9/overlay/bin 2022-10-25T06:07:19,103 changing mode of /tmp/pip-build-env-prb7iht9/overlay/bin/hatchling to 755 2022-10-25T06:07:19,127 Successfully installed editables-0.3 hatchling-1.11.1 packaging-21.3 pathspec-0.10.1 pluggy-1.0.0 pyparsing-3.0.9 tomli-2.0.1 2022-10-25T06:07:19,168 --- Logging error --- 2022-10-25T06:07:19,174 Traceback (most recent call last): 2022-10-25T06:07:19,174 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 177, in emit 2022-10-25T06:07:19,174 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-10-25T06:07:19,174 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1673, in print 2022-10-25T06:07:19,175 extend(render(renderable, render_options)) 2022-10-25T06:07:19,175 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1305, in render 2022-10-25T06:07:19,175 for render_output in iter_render: 2022-10-25T06:07:19,175 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-10-25T06:07:19,175 for line in lines: 2022-10-25T06:07:19,175 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/segment.py", line 249, in split_lines 2022-10-25T06:07:19,175 for segment in segments: 2022-10-25T06:07:19,176 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/console.py", line 1283, in render 2022-10-25T06:07:19,176 renderable = rich_cast(renderable) 2022-10-25T06:07:19,176 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-10-25T06:07:19,176 renderable = cast_method() 2022-10-25T06:07:19,176 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-10-25T06:07:19,176 pip_cmd = get_best_invocation_for_this_pip() 2022-10-25T06:07:19,176 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-10-25T06:07:19,176 if found_executable and os.path.samefile( 2022-10-25T06:07:19,177 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-10-25T06:07:19,177 s2 = os.stat(f2) 2022-10-25T06:07:19,177 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-10-25T06:07:19,177 Call stack: 2022-10-25T06:07:19,179 File "/usr/local/lib/python3.9/dist-packages/pip/__pip-runner__.py", line 36, in 2022-10-25T06:07:19,179 runpy.run_module("pip", run_name="__main__", alter_sys=True) 2022-10-25T06:07:19,180 File "/usr/lib/python3.9/runpy.py", line 210, in run_module 2022-10-25T06:07:19,180 return _run_module_code(code, init_globals, run_name, mod_spec) 2022-10-25T06:07:19,180 File "/usr/lib/python3.9/runpy.py", line 97, in _run_module_code 2022-10-25T06:07:19,180 _run_code(code, mod_globals, init_globals, 2022-10-25T06:07:19,180 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-10-25T06:07:19,180 exec(code, run_globals) 2022-10-25T06:07:19,180 File "/usr/local/lib/python3.9/dist-packages/pip/__main__.py", line 31, in 2022-10-25T06:07:19,180 sys.exit(_main()) 2022-10-25T06:07:19,181 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/main.py", line 70, in main 2022-10-25T06:07:19,181 return command.main(cmd_args) 2022-10-25T06:07:19,181 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 101, in main 2022-10-25T06:07:19,181 return self._main(args) 2022-10-25T06:07:19,181 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 223, in _main 2022-10-25T06:07:19,181 self.handle_pip_version_check(options) 2022-10-25T06:07:19,181 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 190, in handle_pip_version_check 2022-10-25T06:07:19,181 pip_self_version_check(session, options) 2022-10-25T06:07:19,182 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/self_outdated_check.py", line 236, in pip_self_version_check 2022-10-25T06:07:19,182 logger.warning("[present-rich] %s", upgrade_prompt) 2022-10-25T06:07:19,182 File "/usr/lib/python3.9/logging/__init__.py", line 1454, in warning 2022-10-25T06:07:19,182 self._log(WARNING, msg, args, **kwargs) 2022-10-25T06:07:19,182 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-10-25T06:07:19,182 self.handle(record) 2022-10-25T06:07:19,182 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-10-25T06:07:19,182 self.callHandlers(record) 2022-10-25T06:07:19,183 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-10-25T06:07:19,183 hdlr.handle(record) 2022-10-25T06:07:19,183 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-10-25T06:07:19,183 self.emit(record) 2022-10-25T06:07:19,183 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/logging.py", line 179, in emit 2022-10-25T06:07:19,183 self.handleError(record) 2022-10-25T06:07:19,183 Message: '[present-rich] %s' 2022-10-25T06:07:19,183 Arguments: (UpgradePrompt(old='22.2.2', new='22.3'),) 2022-10-25T06:07:19,427 Installing build dependencies: finished with status 'done' 2022-10-25T06:07:19,432 Getting requirements to build wheel: started 2022-10-25T06:07:19,433 Running command Getting requirements to build wheel 2022-10-25T06:07:19,741 Getting requirements to build wheel: finished with status 'done' 2022-10-25T06:07:19,747 Created temporary directory: /tmp/pip-modern-metadata-vb3ix1_f 2022-10-25T06:07:19,750 Preparing metadata (pyproject.toml): started 2022-10-25T06:07:19,751 Running command Preparing metadata (pyproject.toml) 2022-10-25T06:07:20,408 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-25T06:07:20,416 Source in /tmp/pip-wheel-__1v5734/scib-metrics_856299eba11248a48e49dd584827fbd1 has version 0.0.5, which satisfies requirement scib-metrics==0.0.5 from https://files.pythonhosted.org/packages/b4/44/907778ae906671f0f9ba4b353c4ee9938e28348f697eae6bf33ddf95eaef/scib_metrics-0.0.5.tar.gz 2022-10-25T06:07:20,417 Removed scib-metrics==0.0.5 from https://files.pythonhosted.org/packages/b4/44/907778ae906671f0f9ba4b353c4ee9938e28348f697eae6bf33ddf95eaef/scib_metrics-0.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-xduh3zw2' 2022-10-25T06:07:20,423 Created temporary directory: /tmp/pip-unpack-eczew12i 2022-10-25T06:07:20,424 Building wheels for collected packages: scib-metrics 2022-10-25T06:07:20,429 Created temporary directory: /tmp/pip-wheel-nxyod537 2022-10-25T06:07:20,429 Destination directory: /tmp/pip-wheel-nxyod537 2022-10-25T06:07:20,432 Building wheel for scib-metrics (pyproject.toml): started 2022-10-25T06:07:20,432 Running command Building wheel for scib-metrics (pyproject.toml) 2022-10-25T06:07:20,567 Building wheel for scib-metrics (pyproject.toml): finished with status 'done' 2022-10-25T06:07:20,573 Created wheel for scib-metrics: filename=scib_metrics-0.0.5-py3-none-any.whl size=21798 sha256=c916cbc8e6b81109cfccb8c83eb270e40b76a1b6a98956f8ee87a60607bfe70a 2022-10-25T06:07:20,574 Stored in directory: /tmp/pip-ephem-wheel-cache-bhg7s1r0/wheels/fc/d0/10/4f6a1eca48179d940b6bf937b513d263fba5c527df1f123ab1 2022-10-25T06:07:20,587 Successfully built scib-metrics 2022-10-25T06:07:20,591 Removed build tracker: '/tmp/pip-build-tracker-xduh3zw2'