2022-10-25T18:43:08,513 Created temporary directory: /tmp/pip-ephem-wheel-cache-1tccogmh 2022-10-25T18:43:08,517 Created temporary directory: /tmp/pip-build-tracker-1jwou8j3 2022-10-25T18:43:08,518 Initialized build tracking at /tmp/pip-build-tracker-1jwou8j3 2022-10-25T18:43:08,518 Created build tracker: /tmp/pip-build-tracker-1jwou8j3 2022-10-25T18:43:08,519 Entered build tracker: /tmp/pip-build-tracker-1jwou8j3 2022-10-25T18:43:08,520 Created temporary directory: /tmp/pip-wheel-ozttw124 2022-10-25T18:43:08,528 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-25T18:43:08,533 Created temporary directory: /tmp/pip-ephem-wheel-cache-338stnea 2022-10-25T18:43:08,583 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-25T18:43:08,590 2 location(s) to search for versions of pyhmmer: 2022-10-25T18:43:08,590 * https://pypi.org/simple/pyhmmer/ 2022-10-25T18:43:08,590 * https://www.piwheels.org/simple/pyhmmer/ 2022-10-25T18:43:08,592 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-10-25T18:43:08,593 Getting page https://pypi.org/simple/pyhmmer/ 2022-10-25T18:43:08,596 Found index url https://pypi.org/simple 2022-10-25T18:43:08,793 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-10-25T18:43:09,001 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2022-10-25T18:43:09,146 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,146 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,147 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,166 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,167 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,168 Found link https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2022-10-25T18:43:09,169 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,169 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,170 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,189 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,190 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,191 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-10-25T18:43:09,192 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,193 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,193 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,195 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,196 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,196 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,197 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,197 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,199 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2022-10-25T18:43:09,199 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,200 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,200 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/d1/ab/7448d935505b12a4a865f273b51c5e6a63ebacc6d3e98acb23b2133c1c8c/pyhmmer-0.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,213 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/15/f3b826ba98bfbc9386e628d9b6fa5237a0e761274a1e84a6e1042fa55784/pyhmmer-0.5.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,213 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/66/e6/77a0ac512c431181dcb2ea9d41912a09518dd4514689bcf035a31576e479/pyhmmer-0.5.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,214 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/c6/37/9e560cd8eb371df3b31e9e60b9503b51155607f8ca1948cb4009a0c47519/pyhmmer-0.6.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,220 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/85/ec2e8f9b2eb9ac3c6a71f1a9cd29c43ffa2a0bdf23da96dcd6c8135b5a88/pyhmmer-0.6.0-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,220 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b4/6a/8a3467282158fac08ea0dc646378789abe5dfa9e77af5f25a1fb658e3a3e/pyhmmer-0.6.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,221 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/25/4a/2db5464d2bb8e41bb346060fd9c3ceae2043c60af6621f04c8e49dbecae9/pyhmmer-0.6.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,240 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/a0/4d7a8f68dc85cd4cf70a39afc592ab67a2e703149887dc78f4d2031a3d1c/pyhmmer-0.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,240 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/b8/a5edf3701cb051f9b8f397cc0ad5312bad4eb6eb761c99ec294b21c922f7/pyhmmer-0.6.2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,241 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,241 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,242 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,242 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,243 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,243 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,245 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2022-10-25T18:43:09,245 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,246 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,246 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/d1/c6278687d5c1b292bdb69419cb3c241a33cd049487e3f6f8c1ea49ae2f63/pyhmmer-0.6.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,247 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9b/fd/18eb2593b4e78f2b4c354ab2c27f44c7005c871cbb88f5979363f447a3f7/pyhmmer-0.6.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,247 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/3d/29a3b664affa3d543bf179c4bc564028436d2d664750d07cb6747610d0bb/pyhmmer-0.6.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,248 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/8a/c9f6d67ff2081be71d5bab224f86dc9fbba04b3a9005d98d1bd4e7abe711/pyhmmer-0.6.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,248 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/40/6efcf88705d32d27951d1d664a8cbb2d43e7b31afcd44c281b24d02f6f0d/pyhmmer-0.6.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,249 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,249 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,250 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,250 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,251 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,251 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,252 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/d4/c43a67e5b31e63a52e7a4204502adf4e43e7c3d5b2f453789d73935dd027/pyhmmer-0.6.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,252 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:43:09,254 Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3 2022-10-25T18:43:09,255 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-10-25T18:43:09,255 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-10-25T18:43:09,258 Found index url https://www.piwheels.org/simple 2022-10-25T18:43:09,489 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-10-25T18:43:09,491 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-10-25T18:43:09,491 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-10-25T18:43:09,534 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-10-25T18:43:09,564 Collecting pyhmmer==0.6.2 2022-10-25T18:43:09,569 Created temporary directory: /tmp/pip-unpack-2037gxin 2022-10-25T18:43:10,153 Downloading pyhmmer-0.6.2.tar.gz (9.9 MB) 2022-10-25T18:43:18,435 Added pyhmmer==0.6.2 from https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz to build tracker '/tmp/pip-build-tracker-1jwou8j3' 2022-10-25T18:43:18,445 Created temporary directory: /tmp/pip-build-env-2nqa6pd2 2022-10-25T18:43:18,457 Installing build dependencies: started 2022-10-25T18:43:18,459 Running command pip subprocess to install build dependencies 2022-10-25T18:43:21,159 Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2022-10-25T18:43:21,894 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-25T18:43:21,948 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-25T18:43:25,793 Collecting setuptools>=46.4 2022-10-25T18:43:26,067 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB) 2022-10-25T18:43:29,270 Collecting cython~=0.29.16 2022-10-25T18:43:29,766 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2022-10-25T18:43:34,605 Installing collected packages: setuptools, cython 2022-10-25T18:43:44,553 Creating /tmp/pip-build-env-2nqa6pd2/overlay/bin 2022-10-25T18:43:44,557 changing mode of /tmp/pip-build-env-2nqa6pd2/overlay/bin/cygdb to 755 2022-10-25T18:43:44,561 changing mode of /tmp/pip-build-env-2nqa6pd2/overlay/bin/cython to 755 2022-10-25T18:43:44,565 changing mode of /tmp/pip-build-env-2nqa6pd2/overlay/bin/cythonize to 755 2022-10-25T18:43:44,611 Successfully installed cython-0.29.32 setuptools-65.5.0 2022-10-25T18:43:45,127 Installing build dependencies: finished with status 'done' 2022-10-25T18:43:45,138 Getting requirements to build wheel: started 2022-10-25T18:43:45,141 Running command Getting requirements to build wheel 2022-10-25T18:43:47,890 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-10-25T18:43:48,112 Getting requirements to build wheel: finished with status 'done' 2022-10-25T18:43:48,150 Installing backend dependencies: started 2022-10-25T18:43:48,152 Running command pip subprocess to install backend dependencies 2022-10-25T18:43:50,846 Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2022-10-25T18:43:51,600 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-25T18:43:51,656 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-25T18:43:52,516 Collecting wheel 2022-10-25T18:43:52,552 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-10-25T18:43:56,407 Installing collected packages: wheel 2022-10-25T18:43:56,675 Creating /tmp/pip-build-env-2nqa6pd2/normal/bin 2022-10-25T18:43:56,680 changing mode of /tmp/pip-build-env-2nqa6pd2/normal/bin/wheel to 755 2022-10-25T18:43:56,706 Successfully installed wheel-0.37.1 2022-10-25T18:43:57,080 Installing backend dependencies: finished with status 'done' 2022-10-25T18:43:57,085 Created temporary directory: /tmp/pip-modern-metadata-jo5k1py7 2022-10-25T18:43:57,092 Preparing metadata (pyproject.toml): started 2022-10-25T18:43:57,094 Running command Preparing metadata (pyproject.toml) 2022-10-25T18:43:59,798 running dist_info 2022-10-25T18:43:59,829 creating /tmp/pip-modern-metadata-jo5k1py7/pyhmmer.egg-info 2022-10-25T18:43:59,838 writing /tmp/pip-modern-metadata-jo5k1py7/pyhmmer.egg-info/PKG-INFO 2022-10-25T18:43:59,845 writing dependency_links to /tmp/pip-modern-metadata-jo5k1py7/pyhmmer.egg-info/dependency_links.txt 2022-10-25T18:43:59,849 writing requirements to /tmp/pip-modern-metadata-jo5k1py7/pyhmmer.egg-info/requires.txt 2022-10-25T18:43:59,850 writing top-level names to /tmp/pip-modern-metadata-jo5k1py7/pyhmmer.egg-info/top_level.txt 2022-10-25T18:43:59,853 writing manifest file '/tmp/pip-modern-metadata-jo5k1py7/pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:43:59,944 reading manifest file '/tmp/pip-modern-metadata-jo5k1py7/pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:43:59,951 reading manifest template 'MANIFEST.in' 2022-10-25T18:44:01,089 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-10-25T18:44:01,089 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-10-25T18:44:01,094 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-10-25T18:44:01,097 no previously-included directories found matching 'vendor/easel/demotic' 2022-10-25T18:44:01,100 no previously-included directories found matching 'vendor/easel/documentation' 2022-10-25T18:44:01,103 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-10-25T18:44:01,106 no previously-included directories found matching 'vendor/easel/miniapps' 2022-10-25T18:44:01,109 no previously-included directories found matching 'vendor/easel/testsuite' 2022-10-25T18:44:01,112 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-10-25T18:44:01,115 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-10-25T18:44:01,118 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-10-25T18:44:01,121 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-10-25T18:44:01,124 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-10-25T18:44:01,127 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-10-25T18:44:01,130 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-10-25T18:44:01,130 adding license file 'COPYING' 2022-10-25T18:44:01,200 writing manifest file '/tmp/pip-modern-metadata-jo5k1py7/pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:44:01,204 creating '/tmp/pip-modern-metadata-jo5k1py7/pyhmmer-0.6.2.dist-info' 2022-10-25T18:44:01,344 adding license file "COPYING" (matched pattern "COPYING*") 2022-10-25T18:44:01,597 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-25T18:44:01,613 Source in /tmp/pip-wheel-ozttw124/pyhmmer_99d2f3741b924c10b87728615a9020a9 has version 0.6.2, which satisfies requirement pyhmmer==0.6.2 from https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz 2022-10-25T18:44:01,615 Removed pyhmmer==0.6.2 from https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz from build tracker '/tmp/pip-build-tracker-1jwou8j3' 2022-10-25T18:44:01,631 Created temporary directory: /tmp/pip-unpack-vesw6g1w 2022-10-25T18:44:01,633 Building wheels for collected packages: pyhmmer 2022-10-25T18:44:01,642 Created temporary directory: /tmp/pip-wheel-qf2_btkc 2022-10-25T18:44:01,642 Destination directory: /tmp/pip-wheel-qf2_btkc 2022-10-25T18:44:01,647 Building wheel for pyhmmer (pyproject.toml): started 2022-10-25T18:44:01,649 Running command Building wheel for pyhmmer (pyproject.toml) 2022-10-25T18:44:04,248 running bdist_wheel 2022-10-25T18:44:04,277 running build 2022-10-25T18:44:04,278 running build_py 2022-10-25T18:44:04,295 creating build 2022-10-25T18:44:04,296 creating build/lib.linux-armv7l-cpython-37 2022-10-25T18:44:04,297 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:04,299 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:04,302 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:04,308 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:04,310 running egg_info 2022-10-25T18:44:04,345 writing pyhmmer.egg-info/PKG-INFO 2022-10-25T18:44:04,351 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-10-25T18:44:04,355 writing requirements to pyhmmer.egg-info/requires.txt 2022-10-25T18:44:04,357 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-10-25T18:44:04,385 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:44:04,429 reading manifest template 'MANIFEST.in' 2022-10-25T18:44:05,604 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-10-25T18:44:05,605 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-10-25T18:44:05,611 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-10-25T18:44:05,615 no previously-included directories found matching 'vendor/easel/demotic' 2022-10-25T18:44:05,620 no previously-included directories found matching 'vendor/easel/documentation' 2022-10-25T18:44:05,625 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-10-25T18:44:05,629 no previously-included directories found matching 'vendor/easel/miniapps' 2022-10-25T18:44:05,634 no previously-included directories found matching 'vendor/easel/testsuite' 2022-10-25T18:44:05,638 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-10-25T18:44:05,643 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-10-25T18:44:05,647 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-10-25T18:44:05,652 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-10-25T18:44:05,656 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-10-25T18:44:05,660 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-10-25T18:44:05,665 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-10-25T18:44:05,666 adding license file 'COPYING' 2022-10-25T18:44:05,759 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:44:05,786 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:05,786 !! 2022-10-25T18:44:05,787 ############################ 2022-10-25T18:44:05,787 # Package would be ignored # 2022-10-25T18:44:05,788 ############################ 2022-10-25T18:44:05,788 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-10-25T18:44:05,788 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:05,789 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-10-25T18:44:05,789 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:05,789 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:05,790 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-10-25T18:44:05,790 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:05,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:05,791 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:05,792 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:05,792 documentation page. 2022-10-25T18:44:05,793 !! 2022-10-25T18:44:05,793 check.warn(importable) 2022-10-25T18:44:05,794 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:05,794 !! 2022-10-25T18:44:05,795 ############################ 2022-10-25T18:44:05,795 # Package would be ignored # 2022-10-25T18:44:05,795 ############################ 2022-10-25T18:44:05,796 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-10-25T18:44:05,796 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:05,797 'pyhmmer.reexports' has been automatically added to the distribution only 2022-10-25T18:44:05,797 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:05,797 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:05,798 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-10-25T18:44:05,798 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:05,798 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:05,799 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:05,799 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:05,799 documentation page. 2022-10-25T18:44:05,800 !! 2022-10-25T18:44:05,801 check.warn(importable) 2022-10-25T18:44:05,801 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:05,801 !! 2022-10-25T18:44:05,802 ############################ 2022-10-25T18:44:05,803 # Package would be ignored # 2022-10-25T18:44:05,803 ############################ 2022-10-25T18:44:05,803 Python recognizes 'pyhmmer.tests' as an importable package, 2022-10-25T18:44:05,803 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:05,804 'pyhmmer.tests' has been automatically added to the distribution only 2022-10-25T18:44:05,804 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:05,805 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:05,805 Please make sure that 'pyhmmer.tests' is included as a package by using 2022-10-25T18:44:05,805 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:05,806 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:05,806 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:05,806 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:05,807 documentation page. 2022-10-25T18:44:05,808 !! 2022-10-25T18:44:05,808 check.warn(importable) 2022-10-25T18:44:05,808 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:05,809 !! 2022-10-25T18:44:05,809 ############################ 2022-10-25T18:44:05,810 # Package would be ignored # 2022-10-25T18:44:05,810 ############################ 2022-10-25T18:44:05,810 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-10-25T18:44:05,811 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:05,811 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-10-25T18:44:05,812 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:05,812 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:05,812 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-10-25T18:44:05,813 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:05,813 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:05,813 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:05,814 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:05,814 documentation page. 2022-10-25T18:44:05,815 !! 2022-10-25T18:44:05,815 check.warn(importable) 2022-10-25T18:44:05,816 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:05,816 !! 2022-10-25T18:44:05,817 ############################ 2022-10-25T18:44:05,817 # Package would be ignored # 2022-10-25T18:44:05,817 ############################ 2022-10-25T18:44:05,818 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-10-25T18:44:05,818 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:05,819 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-10-25T18:44:05,819 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:05,819 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:05,820 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-10-25T18:44:05,820 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:05,820 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:05,820 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:05,821 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:05,821 documentation page. 2022-10-25T18:44:05,822 !! 2022-10-25T18:44:05,823 check.warn(importable) 2022-10-25T18:44:05,823 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:05,823 !! 2022-10-25T18:44:05,824 ############################ 2022-10-25T18:44:05,824 # Package would be ignored # 2022-10-25T18:44:05,825 ############################ 2022-10-25T18:44:05,825 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-10-25T18:44:05,825 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:05,826 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-10-25T18:44:05,826 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:05,826 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:05,827 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-10-25T18:44:05,827 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:05,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:05,828 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:05,828 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:05,829 documentation page. 2022-10-25T18:44:05,829 !! 2022-10-25T18:44:05,830 check.warn(importable) 2022-10-25T18:44:05,830 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:05,831 !! 2022-10-25T18:44:05,831 ############################ 2022-10-25T18:44:05,832 # Package would be ignored # 2022-10-25T18:44:05,832 ############################ 2022-10-25T18:44:05,832 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-10-25T18:44:05,833 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:05,833 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-10-25T18:44:05,833 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:05,834 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:05,834 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-10-25T18:44:05,835 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:05,835 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:05,835 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:05,836 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:05,836 documentation page. 2022-10-25T18:44:05,837 !! 2022-10-25T18:44:05,837 check.warn(importable) 2022-10-25T18:44:05,838 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:05,838 !! 2022-10-25T18:44:05,839 ############################ 2022-10-25T18:44:05,839 # Package would be ignored # 2022-10-25T18:44:05,839 ############################ 2022-10-25T18:44:05,840 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-10-25T18:44:05,840 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:05,840 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-10-25T18:44:05,841 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:05,841 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:05,842 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-10-25T18:44:05,842 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:05,842 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:05,842 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:05,843 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:05,843 documentation page. 2022-10-25T18:44:05,844 !! 2022-10-25T18:44:05,845 check.warn(importable) 2022-10-25T18:44:05,868 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,871 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,876 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,881 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,885 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,890 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,904 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,908 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,912 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,916 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,920 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,926 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,943 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-10-25T18:44:05,946 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-10-25T18:44:05,947 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-10-25T18:44:05,952 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-10-25T18:44:05,957 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-10-25T18:44:05,959 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-10-25T18:44:05,963 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-10-25T18:44:05,967 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-10-25T18:44:05,971 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-10-25T18:44:05,975 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-10-25T18:44:05,979 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-10-25T18:44:05,982 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-10-25T18:44:05,986 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-10-25T18:44:05,987 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-10-25T18:44:05,992 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-10-25T18:44:05,995 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-10-25T18:44:06,000 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-10-25T18:44:06,004 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-10-25T18:44:06,009 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-10-25T18:44:06,013 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-10-25T18:44:06,014 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-10-25T18:44:06,019 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-10-25T18:44:06,020 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-10-25T18:44:06,024 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-10-25T18:44:06,026 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-10-25T18:44:06,033 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-10-25T18:44:06,042 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-10-25T18:44:06,050 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-10-25T18:44:06,166 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,168 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,173 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,177 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,183 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,189 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,194 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,198 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,206 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,214 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,220 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,225 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,232 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,240 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,284 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,288 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,416 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-10-25T18:44:06,566 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-10-25T18:44:06,568 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-10-25T18:44:06,581 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-10-25T18:44:06,590 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-10-25T18:44:06,602 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-10-25T18:44:06,612 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-10-25T18:44:06,627 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-10-25T18:44:06,645 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-10-25T18:44:06,879 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:44:06,881 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:44:06,889 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:44:06,900 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:44:06,908 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:44:07,109 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-10-25T18:44:07,110 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-10-25T18:44:07,114 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-10-25T18:44:07,118 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-10-25T18:44:07,122 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-10-25T18:44:07,124 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-10-25T18:44:07,129 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-10-25T18:44:07,134 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-10-25T18:44:07,138 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-10-25T18:44:07,142 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-10-25T18:44:07,144 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-10-25T18:44:07,200 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-10-25T18:44:07,215 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-10-25T18:44:07,374 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-10-25T18:44:07,384 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-10-25T18:44:07,389 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-10-25T18:44:07,394 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-10-25T18:44:07,397 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-10-25T18:44:07,399 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-10-25T18:44:07,404 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-10-25T18:44:07,408 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-10-25T18:44:07,413 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-10-25T18:44:07,417 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-10-25T18:44:07,420 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-10-25T18:44:07,424 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-10-25T18:44:07,431 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-10-25T18:44:07,437 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,439 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,443 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,447 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,450 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,454 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,459 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,464 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,481 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,485 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,490 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,495 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,499 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-10-25T18:44:07,504 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,505 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,509 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,513 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,518 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,521 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,526 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,530 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,534 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,538 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,542 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,546 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,550 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-10-25T18:44:07,556 running build_clib 2022-10-25T18:44:07,574 creating build/temp.linux-armv7l-cpython-37 2022-10-25T18:44:07,575 generating "divsufsort.h" for divsufsort library 2022-10-25T18:44:07,576 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2022-10-25T18:44:07,580 generating "esl_config.h" for easel library 2022-10-25T18:44:08,409 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:08,410 !! 2022-10-25T18:44:08,411 ############################ 2022-10-25T18:44:08,411 # Package would be ignored # 2022-10-25T18:44:08,412 ############################ 2022-10-25T18:44:08,412 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-10-25T18:44:08,412 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:08,413 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-10-25T18:44:08,413 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:08,414 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:08,414 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-10-25T18:44:08,414 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:08,415 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:08,415 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:08,416 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:08,416 documentation page. 2022-10-25T18:44:08,417 !! 2022-10-25T18:44:08,418 check.warn(importable) 2022-10-25T18:44:08,418 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:08,418 !! 2022-10-25T18:44:08,419 ############################ 2022-10-25T18:44:08,420 # Package would be ignored # 2022-10-25T18:44:08,420 ############################ 2022-10-25T18:44:08,420 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-10-25T18:44:08,421 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:08,421 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-10-25T18:44:08,422 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:08,422 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:08,423 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-10-25T18:44:08,423 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:08,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:08,423 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:08,424 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:08,424 documentation page. 2022-10-25T18:44:08,425 !! 2022-10-25T18:44:08,426 check.warn(importable) 2022-10-25T18:44:08,427 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:08,427 !! 2022-10-25T18:44:08,428 ############################ 2022-10-25T18:44:08,428 # Package would be ignored # 2022-10-25T18:44:08,429 ############################ 2022-10-25T18:44:08,429 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-10-25T18:44:08,430 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:08,431 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-10-25T18:44:08,431 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:08,432 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:08,432 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-10-25T18:44:08,433 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:08,433 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:08,433 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:08,434 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:08,434 documentation page. 2022-10-25T18:44:08,435 !! 2022-10-25T18:44:08,436 check.warn(importable) 2022-10-25T18:44:08,436 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:08,437 !! 2022-10-25T18:44:08,438 ############################ 2022-10-25T18:44:08,438 # Package would be ignored # 2022-10-25T18:44:08,439 ############################ 2022-10-25T18:44:08,439 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-10-25T18:44:08,440 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:08,440 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-10-25T18:44:08,441 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:08,441 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:08,442 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-10-25T18:44:08,443 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:08,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:08,443 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:08,444 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:08,444 documentation page. 2022-10-25T18:44:08,445 !! 2022-10-25T18:44:08,446 check.warn(importable) 2022-10-25T18:44:08,446 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:08,447 !! 2022-10-25T18:44:08,448 ############################ 2022-10-25T18:44:08,448 # Package would be ignored # 2022-10-25T18:44:08,449 ############################ 2022-10-25T18:44:08,449 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-10-25T18:44:08,450 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:08,450 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-10-25T18:44:08,451 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:08,451 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:08,452 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-10-25T18:44:08,452 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:08,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:08,453 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:08,453 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:08,454 documentation page. 2022-10-25T18:44:08,455 !! 2022-10-25T18:44:08,455 check.warn(importable) 2022-10-25T18:44:08,456 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.test_easel' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:08,456 !! 2022-10-25T18:44:08,457 ############################ 2022-10-25T18:44:08,457 # Package would be ignored # 2022-10-25T18:44:08,458 ############################ 2022-10-25T18:44:08,458 Python recognizes 'pyhmmer.tests.test_easel' as an importable package, 2022-10-25T18:44:08,458 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:08,459 'pyhmmer.tests.test_easel' has been automatically added to the distribution only 2022-10-25T18:44:08,460 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:08,460 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:08,460 Please make sure that 'pyhmmer.tests.test_easel' is included as a package by using 2022-10-25T18:44:08,461 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:08,461 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:08,461 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:08,462 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:08,462 documentation page. 2022-10-25T18:44:08,463 !! 2022-10-25T18:44:08,464 check.warn(importable) 2022-10-25T18:44:08,464 /tmp/pip-build-env-2nqa6pd2/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.test_plan7' as data is deprecated, please list it in `packages`. 2022-10-25T18:44:08,464 !! 2022-10-25T18:44:08,465 ############################ 2022-10-25T18:44:08,466 # Package would be ignored # 2022-10-25T18:44:08,466 ############################ 2022-10-25T18:44:08,466 Python recognizes 'pyhmmer.tests.test_plan7' as an importable package, 2022-10-25T18:44:08,466 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:44:08,467 'pyhmmer.tests.test_plan7' has been automatically added to the distribution only 2022-10-25T18:44:08,467 because it may contain data files, but this behavior is likely to change 2022-10-25T18:44:08,468 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:44:08,468 Please make sure that 'pyhmmer.tests.test_plan7' is included as a package by using 2022-10-25T18:44:08,468 the `packages` configuration field or the proper discovery methods 2022-10-25T18:44:08,469 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:44:08,469 instead of `find_packages(...)`/`find:`). 2022-10-25T18:44:08,469 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:44:08,470 documentation page. 2022-10-25T18:44:08,471 !! 2022-10-25T18:44:08,471 check.warn(importable) 2022-10-25T18:44:08,472 checking whether can be included... yes 2022-10-25T18:44:08,472 checking whether can be included... yes 2022-10-25T18:44:08,472 checking whether can be included... yes 2022-10-25T18:44:08,472 checking whether can be included... yes 2022-10-25T18:44:18,550 checking whether can be includedgenerating "p7_config.h" for hmmer library 2022-10-25T18:44:30,870 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-10-25T18:44:30,896 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-10-25T18:44:30,919 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-10-25T18:44:30,934 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-10-25T18:44:30,935 creating build/temp.linux-armv7l-cpython-37/vendor 2022-10-25T18:44:30,936 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2022-10-25T18:44:30,937 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2022-10-25T18:44:30,939 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-10-25T18:44:39,960 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-10-25T18:44:40,024 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_scorematrix.c, vendor/easel/esl_msafile.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_stats.c, vendor/easel/esl_red_black.c, vendor/easel/esl_hyperexp.c, vendor/easel/easel.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_varint.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_avx512.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_sse.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_vmx.c, vendor/easel/esl_rand64.c, vendor/easel/esl_alloc.c, vendor/easel/esl_arr2.c, vendor/easel/esl_swat.c, vendor/easel/esl_cluster.c, vendor/easel/esl_arr3.c, vendor/easel/esl_graph.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_cpu.c, vendor/easel/esl_regexp.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_buffer.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_sq.c, vendor/easel/esl_sqio.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_recorder.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_distance.c, vendor/easel/esl_huffman.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_avx.c, vendor/easel/esl_mpi.c, vendor/easel/esl_neon.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_hmm.c, vendor/easel/esl_paml.c, vendor/easel/esl_histogram.c, vendor/easel/esl_gencode.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_wuss.c, vendor/easel/esl_threads.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_getopts.c, vendor/easel/esl_exponential.c, vendor/easel/esl_stack.c, vendor/easel/interface_lapack.c, vendor/easel/esl_composition.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_gev.c, vendor/easel/esl_ssi.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_tree.c, vendor/easel/esl_msa.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_mem.c, vendor/easel/esl_heap.c, vendor/easel/interface_gsl.c, vendor/easel/esl_json.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_gamma.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_random.c, vendor/easel/esl_weibull.c, vendor/easel/esl_normal.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_msafile_afa.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-10-25T18:44:40,032 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-10-25T18:44:40,038 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-10-25T18:44:40,039 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-10-25T18:44:40,040 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-10-25T18:44:40,040 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-10-25T18:44:40,041 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-10-25T18:44:40,042 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-10-25T18:44:40,043 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2022-10-25T18:44:40,044 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2022-10-25T18:44:40,045 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2022-10-25T18:44:40,046 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2022-10-25T18:44:40,325 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-10-25T18:44:40,327 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2022-10-25T18:44:40,599 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-10-25T18:44:40,601 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2022-10-25T18:44:40,951 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-10-25T18:44:40,953 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2022-10-25T18:44:41,062 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-10-25T18:44:41,064 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2022-10-25T18:44:41,168 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-10-25T18:44:41,169 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2022-10-25T18:44:41,187 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-10-25T18:44:41,189 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2022-10-25T18:44:41,914 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-10-25T18:44:41,916 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2022-10-25T18:44:42,248 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-10-25T18:44:42,249 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:44:42,249 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-10-25T18:44:42,250 ^ 2022-10-25T18:44:42,439 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-10-25T18:44:42,440 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2022-10-25T18:44:42,523 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-10-25T18:44:42,524 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2022-10-25T18:44:42,667 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-10-25T18:44:42,668 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2022-10-25T18:44:43,110 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-10-25T18:44:43,112 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2022-10-25T18:44:44,003 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-10-25T18:44:44,005 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2022-10-25T18:44:44,018 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-10-25T18:44:44,022 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2022-10-25T18:44:44,044 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2022-10-25T18:44:44,046 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2022-10-25T18:44:44,396 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-10-25T18:44:44,396 static double stopwatch_getRealTime(void); 2022-10-25T18:44:44,397 ^~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:44:44,497 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-10-25T18:44:44,498 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:44:44,499 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-10-25T18:44:44,499 ^~~~~~~~~~~~~~~~ 2022-10-25T18:44:44,507 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-10-25T18:44:44,509 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2022-10-25T18:44:44,842 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-10-25T18:44:44,843 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2022-10-25T18:44:45,272 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-10-25T18:44:45,273 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2022-10-25T18:44:47,006 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-10-25T18:44:47,007 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:44:47,008 int flags; 2022-10-25T18:44:47,008 ^~~~~ 2022-10-25T18:44:47,009 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-10-25T18:44:47,011 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2022-10-25T18:44:47,459 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-10-25T18:44:47,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2022-10-25T18:44:47,504 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-10-25T18:44:47,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2022-10-25T18:44:47,907 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-10-25T18:44:47,909 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2022-10-25T18:44:47,950 In file included from vendor/easel/esl_msafile2.c:26: 2022-10-25T18:44:47,951 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-10-25T18:44:47,953 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:44:47,954 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:44:47,954 ^ 2022-10-25T18:44:47,955 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:44:47,955 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-10-25T18:44:47,956 ^~~~~~~ 2022-10-25T18:44:47,957 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:44:47,958 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:44:47,958 ^~~ 2022-10-25T18:44:47,958 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:44:47,959 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-10-25T18:44:47,959 ^~~~~~~ 2022-10-25T18:44:47,964 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:44:47,965 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:44:47,965 ^ 2022-10-25T18:44:47,966 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:44:47,966 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-10-25T18:44:47,967 ^~~~~~~ 2022-10-25T18:44:47,968 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:44:47,969 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:44:47,969 ^~~ 2022-10-25T18:44:47,970 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:44:47,970 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-10-25T18:44:47,971 ^~~~~~~ 2022-10-25T18:44:48,696 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-10-25T18:44:48,697 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:44:48,698 if (opt_fx) *opt_fx = fx; 2022-10-25T18:44:48,698 ~~~~~~~~^~~~ 2022-10-25T18:44:48,699 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:44:48,699 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-10-25T18:44:48,700 ~~^~~ 2022-10-25T18:44:48,700 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-10-25T18:44:48,701 double ax,bx,cx; 2022-10-25T18:44:48,701 ^~ 2022-10-25T18:44:48,702 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:44:48,703 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-10-25T18:44:48,703 ~^~~~~~~~~~~~~ 2022-10-25T18:44:48,704 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-10-25T18:44:48,704 double ax,bx,cx; 2022-10-25T18:44:48,705 ^~ 2022-10-25T18:44:49,275 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-10-25T18:44:49,276 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:44:49,277 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-10-25T18:44:49,278 ^ 2022-10-25T18:44:49,278 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-10-25T18:44:49,279 char *p; 2022-10-25T18:44:49,279 ^ 2022-10-25T18:44:49,299 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-10-25T18:44:49,301 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2022-10-25T18:44:49,904 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-10-25T18:44:49,906 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2022-10-25T18:44:50,502 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-10-25T18:44:50,504 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2022-10-25T18:44:51,554 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-10-25T18:44:51,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2022-10-25T18:44:52,087 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-10-25T18:44:52,088 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2022-10-25T18:44:52,186 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-10-25T18:44:52,187 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2022-10-25T18:44:52,324 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-10-25T18:44:52,326 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2022-10-25T18:44:52,559 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-10-25T18:44:52,561 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-10-25T18:44:52,562 for (pos = 0; pos < sq->n; pos++) 2022-10-25T18:44:52,562 ^ 2022-10-25T18:44:52,564 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-10-25T18:44:52,565 for (pos = 1; pos <= sq->n; pos++) 2022-10-25T18:44:52,565 ^~ 2022-10-25T18:44:53,864 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-10-25T18:44:53,865 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2022-10-25T18:44:54,814 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-10-25T18:44:54,815 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:44:54,815 if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-10-25T18:44:54,816 ~~~~^~~~~~~ 2022-10-25T18:44:55,038 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-10-25T18:44:55,040 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2022-10-25T18:44:55,939 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-10-25T18:44:55,941 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2022-10-25T18:44:56,122 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-10-25T18:44:56,123 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2022-10-25T18:44:56,403 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-10-25T18:44:56,404 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:44:56,405 if (alphatype != dd->abc_r->type) 2022-10-25T18:44:56,405 ^~ 2022-10-25T18:44:56,425 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-10-25T18:44:56,425 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:44:56,426 if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-10-25T18:44:56,426 ^ 2022-10-25T18:44:56,427 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:44:56,427 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-10-25T18:44:56,427 ^ 2022-10-25T18:44:56,428 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:44:56,428 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-10-25T18:44:56,429 ^ 2022-10-25T18:44:56,429 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:44:56,430 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-10-25T18:44:56,430 ^ 2022-10-25T18:44:56,434 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:44:56,435 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-10-25T18:44:56,436 ^~ 2022-10-25T18:44:56,436 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:44:56,437 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-10-25T18:44:56,437 ^~ 2022-10-25T18:44:56,438 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:44:56,438 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-10-25T18:44:56,439 ^~ 2022-10-25T18:44:56,439 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:44:56,439 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-10-25T18:44:56,440 ^~ 2022-10-25T18:44:56,519 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-10-25T18:44:56,519 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-10-25T18:44:56,520 } 2022-10-25T18:44:56,520 ^ 2022-10-25T18:44:56,534 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-10-25T18:44:56,535 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-10-25T18:44:56,536 } 2022-10-25T18:44:56,536 ^ 2022-10-25T18:44:56,565 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-10-25T18:44:56,567 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2022-10-25T18:44:56,788 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-10-25T18:44:56,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2022-10-25T18:44:57,676 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-10-25T18:44:57,677 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2022-10-25T18:44:58,101 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-10-25T18:44:58,102 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2022-10-25T18:44:58,116 In file included from vendor/easel/esl_hmm.c:9: 2022-10-25T18:44:58,117 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-10-25T18:44:58,117 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:44:58,118 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-25T18:44:58,118 ^ 2022-10-25T18:44:58,119 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-10-25T18:44:58,119 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-10-25T18:44:58,120 ^~~~~~~ 2022-10-25T18:44:58,120 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:44:58,121 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-25T18:44:58,122 ^~~ 2022-10-25T18:44:58,122 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-10-25T18:44:58,123 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-10-25T18:44:58,123 ^~~~~~~ 2022-10-25T18:44:58,264 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-10-25T18:44:58,265 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2022-10-25T18:45:00,027 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-10-25T18:45:00,029 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2022-10-25T18:45:00,462 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-10-25T18:45:00,463 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2022-10-25T18:45:00,733 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-10-25T18:45:00,735 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2022-10-25T18:45:00,781 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-10-25T18:45:00,782 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2022-10-25T18:45:00,839 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-10-25T18:45:00,841 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:00,842 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-10-25T18:45:00,842 ^~ 2022-10-25T18:45:01,137 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-10-25T18:45:01,137 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:01,138 if (rank > h->n) 2022-10-25T18:45:01,139 ^ 2022-10-25T18:45:01,181 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-10-25T18:45:01,182 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2022-10-25T18:45:02,289 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-10-25T18:45:02,290 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2022-10-25T18:45:02,957 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-10-25T18:45:02,958 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:45:02,958 return status; 2022-10-25T18:45:02,959 ^~~~~~ 2022-10-25T18:45:03,466 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-10-25T18:45:03,468 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2022-10-25T18:45:04,224 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-10-25T18:45:04,225 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2022-10-25T18:45:04,361 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-10-25T18:45:04,362 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2022-10-25T18:45:04,618 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-10-25T18:45:04,619 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2022-10-25T18:45:04,811 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-10-25T18:45:04,812 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2022-10-25T18:45:05,000 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-10-25T18:45:05,001 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2022-10-25T18:45:05,260 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-10-25T18:45:05,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2022-10-25T18:45:05,353 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-10-25T18:45:05,354 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-10-25T18:45:05,354 for (h = 0; h < kh->hashsize; h++) 2022-10-25T18:45:05,355 ^ 2022-10-25T18:45:05,355 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-10-25T18:45:05,356 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:05,356 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-10-25T18:45:05,357 ^ 2022-10-25T18:45:05,358 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-10-25T18:45:05,358 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-10-25T18:45:05,359 for (h = 0; h < kh->hashsize; h++) 2022-10-25T18:45:05,359 ^ 2022-10-25T18:45:05,363 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-10-25T18:45:05,364 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:05,364 if (kh->nkeys > 3*kh->hashsize) 2022-10-25T18:45:05,365 ^ 2022-10-25T18:45:05,368 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-10-25T18:45:05,368 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:05,369 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-10-25T18:45:05,369 ^ 2022-10-25T18:45:05,374 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-10-25T18:45:05,374 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:05,375 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-10-25T18:45:05,375 ^ 2022-10-25T18:45:05,653 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-10-25T18:45:05,654 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2022-10-25T18:45:06,247 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-10-25T18:45:06,249 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2022-10-25T18:45:06,493 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-10-25T18:45:06,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2022-10-25T18:45:06,687 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-10-25T18:45:06,688 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:06,689 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-10-25T18:45:06,689 ^~ 2022-10-25T18:45:07,335 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-10-25T18:45:07,336 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2022-10-25T18:45:08,681 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-10-25T18:45:08,683 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2022-10-25T18:45:09,043 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-10-25T18:45:09,044 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,044 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-10-25T18:45:09,045 ^~ 2022-10-25T18:45:09,068 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-10-25T18:45:09,069 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,069 if ((n+1) > ns->flen) ns->flen = n+1; 2022-10-25T18:45:09,070 ^ 2022-10-25T18:45:09,077 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-10-25T18:45:09,078 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,078 if (n > ns->plen) ns->plen = n; 2022-10-25T18:45:09,079 ^ 2022-10-25T18:45:09,082 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,082 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-10-25T18:45:09,083 ^ 2022-10-25T18:45:09,084 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-10-25T18:45:09,085 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,085 if (n > ns->slen) ns->slen = n; 2022-10-25T18:45:09,086 ^ 2022-10-25T18:45:09,088 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,089 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-10-25T18:45:09,089 ^ 2022-10-25T18:45:09,101 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-10-25T18:45:09,102 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,103 for (i = 0; i < ns->nprimary; i++) 2022-10-25T18:45:09,103 ^ 2022-10-25T18:45:09,105 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,105 for (i = 0; i < ns->nprimary; i++) 2022-10-25T18:45:09,106 ^ 2022-10-25T18:45:09,107 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,108 for (i = 0; i < ns->nsecondary; i++) 2022-10-25T18:45:09,109 ^ 2022-10-25T18:45:09,110 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,111 for (i = 0; i < ns->nsecondary; i++) 2022-10-25T18:45:09,112 ^ 2022-10-25T18:45:09,119 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-10-25T18:45:09,120 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,120 for (i = 0; i < ns->nprimary; i++) 2022-10-25T18:45:09,121 ^ 2022-10-25T18:45:09,121 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,122 for (i = 0; i < ns->nsecondary; i++) 2022-10-25T18:45:09,122 ^ 2022-10-25T18:45:09,133 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-10-25T18:45:09,133 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,134 for (i = 0; i < ns->nprimary; i++) { 2022-10-25T18:45:09,134 ^ 2022-10-25T18:45:09,135 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,136 for (i = 0; i < ns->nsecondary; i++) 2022-10-25T18:45:09,136 ^ 2022-10-25T18:45:09,137 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,138 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-10-25T18:45:09,138 ^ 2022-10-25T18:45:09,139 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,139 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-10-25T18:45:09,139 ^ 2022-10-25T18:45:09,140 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:09,141 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-10-25T18:45:09,141 ^ 2022-10-25T18:45:10,283 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-10-25T18:45:10,285 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2022-10-25T18:45:10,313 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-10-25T18:45:10,316 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2022-10-25T18:45:10,621 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-10-25T18:45:10,622 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2022-10-25T18:45:11,363 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-10-25T18:45:11,364 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2022-10-25T18:45:12,574 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-10-25T18:45:12,575 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2022-10-25T18:45:12,765 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-10-25T18:45:12,767 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2022-10-25T18:45:13,286 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-10-25T18:45:13,288 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2022-10-25T18:45:13,370 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-10-25T18:45:13,372 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2022-10-25T18:45:14,775 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-10-25T18:45:14,776 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2022-10-25T18:45:15,097 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-10-25T18:45:15,098 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2022-10-25T18:45:15,571 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-10-25T18:45:15,572 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2022-10-25T18:45:15,964 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-10-25T18:45:15,965 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:15,966 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-10-25T18:45:15,966 ^~ 2022-10-25T18:45:15,967 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:15,968 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-10-25T18:45:15,968 ^~ 2022-10-25T18:45:15,969 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:15,970 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-10-25T18:45:15,970 ^~ 2022-10-25T18:45:15,992 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-10-25T18:45:15,993 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:15,993 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:45:15,994 ^~ 2022-10-25T18:45:15,995 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-10-25T18:45:15,996 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:15,996 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:45:15,997 ^~ 2022-10-25T18:45:15,997 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-10-25T18:45:15,998 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:15,998 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:45:15,998 ^~ 2022-10-25T18:45:16,003 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-10-25T18:45:16,004 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,005 if (status != eslOK || nres != W) { 2022-10-25T18:45:16,005 ^~ 2022-10-25T18:45:16,006 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,006 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:45:16,007 ^~ 2022-10-25T18:45:16,028 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-10-25T18:45:16,029 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,029 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-10-25T18:45:16,029 ^ 2022-10-25T18:45:16,035 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,036 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-10-25T18:45:16,036 ^~ 2022-10-25T18:45:16,037 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-10-25T18:45:16,038 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,039 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-10-25T18:45:16,039 ^ 2022-10-25T18:45:16,040 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,040 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-10-25T18:45:16,040 ^~ 2022-10-25T18:45:16,041 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,042 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-10-25T18:45:16,042 ^ 2022-10-25T18:45:16,042 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,043 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-10-25T18:45:16,043 ^ 2022-10-25T18:45:16,044 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,044 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-10-25T18:45:16,045 ^ 2022-10-25T18:45:16,045 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,046 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-10-25T18:45:16,046 ^ 2022-10-25T18:45:16,046 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,047 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-10-25T18:45:16,047 ^ 2022-10-25T18:45:16,048 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,048 if (inx < volume->end_seq) break; 2022-10-25T18:45:16,049 ^ 2022-10-25T18:45:16,049 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,050 if (cnt >= ncbi->volumes) return eslFAIL; 2022-10-25T18:45:16,050 ^~ 2022-10-25T18:45:16,051 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,102 if (ncbi->index_start == -1 || inx > end) { 2022-10-25T18:45:16,104 ^~ 2022-10-25T18:45:16,106 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,108 if (ncbi->index_start == -1 || inx > end) { 2022-10-25T18:45:16,109 ^ 2022-10-25T18:45:16,111 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,113 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-10-25T18:45:16,115 ^~ 2022-10-25T18:45:16,116 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,118 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-10-25T18:45:16,120 ^~ 2022-10-25T18:45:16,121 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,123 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-10-25T18:45:16,124 ^~ 2022-10-25T18:45:16,126 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-10-25T18:45:16,127 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,129 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:45:16,131 ^~ 2022-10-25T18:45:16,133 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,134 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-25T18:45:16,136 ^~ 2022-10-25T18:45:16,151 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,152 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-25T18:45:16,153 ^~ 2022-10-25T18:45:16,153 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-10-25T18:45:16,153 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,154 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:45:16,154 ^~ 2022-10-25T18:45:16,155 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,155 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-25T18:45:16,156 ^~ 2022-10-25T18:45:16,156 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,157 if (ncbi->seq_apos - sq->doff < size) { 2022-10-25T18:45:16,157 ^ 2022-10-25T18:45:16,158 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-10-25T18:45:16,158 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,158 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:45:16,159 ^~ 2022-10-25T18:45:16,159 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,160 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-25T18:45:16,160 ^~ 2022-10-25T18:45:16,161 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-10-25T18:45:16,161 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,162 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:45:16,163 ^~ 2022-10-25T18:45:16,163 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,164 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-10-25T18:45:16,164 ^~ 2022-10-25T18:45:16,165 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-10-25T18:45:16,165 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,166 for (x = 0; x < strlen(ncbisym); ++x) { 2022-10-25T18:45:16,166 ^ 2022-10-25T18:45:16,166 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,167 for (y = 0; y < strlen(abc->sym); ++y) { 2022-10-25T18:45:16,167 ^ 2022-10-25T18:45:16,168 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,168 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-10-25T18:45:16,169 ^~ 2022-10-25T18:45:16,169 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-10-25T18:45:16,170 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,170 for (x = 0; x < strlen(ncbisym); ++x) { 2022-10-25T18:45:16,171 ^ 2022-10-25T18:45:16,171 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,172 for (y = 0; y < strlen(abc->sym); ++y) { 2022-10-25T18:45:16,173 ^ 2022-10-25T18:45:16,174 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:16,174 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-10-25T18:45:16,175 ^~ 2022-10-25T18:45:16,176 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-10-25T18:45:16,177 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:16,177 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-10-25T18:45:16,178 ^~ 2022-10-25T18:45:16,713 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-10-25T18:45:16,714 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2022-10-25T18:45:17,701 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-10-25T18:45:17,702 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2022-10-25T18:45:18,101 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-10-25T18:45:18,103 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-10-25T18:45:18,103 for (i = 0; i < a; i++) 2022-10-25T18:45:18,104 ^ 2022-10-25T18:45:18,585 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-10-25T18:45:18,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2022-10-25T18:45:18,661 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-10-25T18:45:18,662 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2022-10-25T18:45:19,694 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-10-25T18:45:19,695 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2022-10-25T18:45:20,894 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-10-25T18:45:20,896 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2022-10-25T18:45:21,459 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-10-25T18:45:21,461 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2022-10-25T18:45:21,575 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-10-25T18:45:21,576 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2022-10-25T18:45:21,873 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-10-25T18:45:21,873 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:21,874 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-10-25T18:45:21,874 ^~ 2022-10-25T18:45:22,839 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-10-25T18:45:22,840 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2022-10-25T18:45:23,546 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-10-25T18:45:23,548 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2022-10-25T18:45:24,177 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-10-25T18:45:24,178 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2022-10-25T18:45:24,341 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-10-25T18:45:24,342 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2022-10-25T18:45:25,019 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-10-25T18:45:25,021 creating build/temp.linux-armv7l-cpython-37/build 2022-10-25T18:45:25,022 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2022-10-25T18:45:25,024 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-10-25T18:45:25,050 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-10-25T18:45:25,052 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2022-10-25T18:45:25,513 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-10-25T18:45:25,514 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:25,514 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-10-25T18:45:25,515 ^~ 2022-10-25T18:45:26,254 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-10-25T18:45:26,255 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2022-10-25T18:45:32,330 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-10-25T18:45:32,899 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2022-10-25T18:45:32,907 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-10-25T18:45:32,908 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-10-25T18:45:32,909 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-10-25T18:45:32,910 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-10-25T18:45:32,911 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-10-25T18:45:32,912 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-10-25T18:45:32,912 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-10-25T18:45:32,912 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-10-25T18:45:32,914 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2022-10-25T18:45:32,917 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2022-10-25T18:45:32,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2022-10-25T18:45:32,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2022-10-25T18:45:33,340 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-10-25T18:45:33,341 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:33,342 #error "No vector implementation enabled" 2022-10-25T18:45:33,342 ^~~~~ 2022-10-25T18:45:33,343 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,343 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:33,344 ^~~~~~ 2022-10-25T18:45:33,344 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,345 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:33,345 ^~~~~~ 2022-10-25T18:45:33,346 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,347 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:33,347 ^~~~~~ 2022-10-25T18:45:33,348 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,348 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:33,349 ^~~~~~ 2022-10-25T18:45:33,350 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,351 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:33,351 ^~~~~~~~~~~ 2022-10-25T18:45:33,352 P7_PROFILE 2022-10-25T18:45:33,352 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,353 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:33,354 ^~~~~~~~~~~ 2022-10-25T18:45:33,354 P7_PROFILE 2022-10-25T18:45:33,365 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,366 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:33,367 ^~~~~~~~~~~ 2022-10-25T18:45:33,367 P7_PROFILE 2022-10-25T18:45:33,368 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,368 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:33,369 ^~~~~~~~~~~ 2022-10-25T18:45:33,370 P7_PROFILE 2022-10-25T18:45:33,370 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,381 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:33,382 ^~~~~~~~~~~ 2022-10-25T18:45:33,382 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,383 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:33,384 ^~~~~~~~~~~ 2022-10-25T18:45:33,384 P7_PROFILE 2022-10-25T18:45:33,385 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,386 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:33,386 ^~~~~~~~~~~ 2022-10-25T18:45:33,387 P7_PROFILE 2022-10-25T18:45:33,388 In file included from vendor/hmmer/src/build.c:32: 2022-10-25T18:45:33,388 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:33,388 #error "No vector implementation enabled" 2022-10-25T18:45:33,389 ^~~~~ 2022-10-25T18:45:33,389 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,390 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,390 ^~~~~~~~~~~ 2022-10-25T18:45:33,391 P7_PROFILE 2022-10-25T18:45:33,402 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,402 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:33,403 ^~~~~~ 2022-10-25T18:45:33,403 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,404 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:33,404 ^~~~~~ 2022-10-25T18:45:33,405 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,405 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:33,406 ^~~~~~ 2022-10-25T18:45:33,406 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,407 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:33,407 ^~~~~~ 2022-10-25T18:45:33,408 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,409 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,409 ^~~~~~ 2022-10-25T18:45:33,410 P7_GMX 2022-10-25T18:45:33,411 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,421 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,422 ^~~~~~ 2022-10-25T18:45:33,422 P7_GMX 2022-10-25T18:45:33,423 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,423 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,424 ^~~~~~ 2022-10-25T18:45:33,425 P7_GMX 2022-10-25T18:45:33,425 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,426 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,426 ^~~~~~ 2022-10-25T18:45:33,427 P7_GMX 2022-10-25T18:45:33,427 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,428 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:33,429 ^~~~~~~~~~~ 2022-10-25T18:45:33,429 P7_PROFILE 2022-10-25T18:45:33,430 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,430 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:33,442 ^~~~~~~~~~~ 2022-10-25T18:45:33,442 P7_PROFILE 2022-10-25T18:45:33,443 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,443 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:33,444 ^~~~~~~~~~~ 2022-10-25T18:45:33,444 P7_PROFILE 2022-10-25T18:45:33,445 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,446 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:33,446 ^~~~~~~~~~~ 2022-10-25T18:45:33,462 P7_PROFILE 2022-10-25T18:45:33,463 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,464 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:33,464 ^~~~~~~~~~~ 2022-10-25T18:45:33,465 P7_PROFILE 2022-10-25T18:45:33,466 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,467 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:33,468 ^~~~~~~~~~~ 2022-10-25T18:45:33,468 P7_PROFILE 2022-10-25T18:45:33,469 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,469 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:33,469 ^~~~~~~~~~~ 2022-10-25T18:45:33,470 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,470 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:33,471 ^~~~~~~~~~~ 2022-10-25T18:45:33,482 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,483 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:33,483 ^~~~~~~~~~~ 2022-10-25T18:45:33,484 P7_PROFILE 2022-10-25T18:45:33,484 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,485 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:33,486 ^~~~~~~~~~~ 2022-10-25T18:45:33,487 P7_PROFILE 2022-10-25T18:45:33,488 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-10-25T18:45:33,488 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:33,489 #error "No vector implementation enabled" 2022-10-25T18:45:33,489 ^~~~~ 2022-10-25T18:45:33,490 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,497 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:33,497 ^~~~~~~~~~~ 2022-10-25T18:45:33,498 P7_PROFILE 2022-10-25T18:45:33,499 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,499 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:33,500 ^~~~~~ 2022-10-25T18:45:33,501 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,511 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:33,512 ^~~~~~ 2022-10-25T18:45:33,512 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,513 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:33,514 ^~~~~~ 2022-10-25T18:45:33,514 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,515 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:33,516 ^~~~~~ 2022-10-25T18:45:33,516 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,517 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:33,517 ^~~~~~~~~~~ 2022-10-25T18:45:33,518 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,519 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:33,519 ^~~~~~~~~~~ 2022-10-25T18:45:33,520 P7_PROFILE 2022-10-25T18:45:33,521 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,532 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:33,533 ^~~~~~~~~~~ 2022-10-25T18:45:33,533 P7_PROFILE 2022-10-25T18:45:33,534 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,535 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:33,536 ^~~~~~~~~~~ 2022-10-25T18:45:33,537 P7_PROFILE 2022-10-25T18:45:33,538 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,539 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:33,539 ^~~~~~~~~~~ 2022-10-25T18:45:33,540 P7_PROFILE 2022-10-25T18:45:33,540 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,545 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:33,546 ^~~~~~~~~~~ 2022-10-25T18:45:33,547 P7_PROFILE 2022-10-25T18:45:33,547 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,548 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:33,548 ^~~~~~~~~~~ 2022-10-25T18:45:33,549 P7_PROFILE 2022-10-25T18:45:33,549 In file included from vendor/hmmer/src/errors.c:19: 2022-10-25T18:45:33,550 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:33,550 #error "No vector implementation enabled" 2022-10-25T18:45:33,551 ^~~~~ 2022-10-25T18:45:33,557 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,557 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:33,557 ^~~~~~~~~~~ 2022-10-25T18:45:33,558 P7_PROFILE 2022-10-25T18:45:33,558 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,558 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:33,559 ^~~~~~ 2022-10-25T18:45:33,559 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,559 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:33,560 ^~~~~~ 2022-10-25T18:45:33,560 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,560 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:33,561 ^~~~~~ 2022-10-25T18:45:33,561 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,562 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:33,564 ^~~~~~ 2022-10-25T18:45:33,565 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,565 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:33,566 ^~~~~~~~~~~ 2022-10-25T18:45:33,567 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,568 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,568 ^~~~~~~~~~~ 2022-10-25T18:45:33,569 P7_PROFILE 2022-10-25T18:45:33,569 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,570 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:33,570 ^~~~~~~~~~~ 2022-10-25T18:45:33,570 P7_PROFILE 2022-10-25T18:45:33,571 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,572 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:33,572 ^~~~~~~~~~~ 2022-10-25T18:45:33,573 P7_PROFILE 2022-10-25T18:45:33,573 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,574 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:33,574 ^~~~~~~~~~~ 2022-10-25T18:45:33,575 P7_PROFILE 2022-10-25T18:45:33,576 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,577 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,577 ^~~~~~~~~~~ 2022-10-25T18:45:33,578 P7_PROFILE 2022-10-25T18:45:33,578 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,578 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:33,579 ^~~~~~~~~~~ 2022-10-25T18:45:33,579 P7_PROFILE 2022-10-25T18:45:33,580 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,580 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,580 ^~~~~~ 2022-10-25T18:45:33,581 P7_GMX 2022-10-25T18:45:33,581 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,582 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,582 ^~~~~~ 2022-10-25T18:45:33,583 P7_GMX 2022-10-25T18:45:33,583 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,584 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:33,584 ^~~~~~~~~~~ 2022-10-25T18:45:33,585 P7_PROFILE 2022-10-25T18:45:33,585 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,585 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,586 ^~~~~~ 2022-10-25T18:45:33,586 P7_GMX 2022-10-25T18:45:33,587 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,588 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,589 ^~~~~~ 2022-10-25T18:45:33,590 P7_GMX 2022-10-25T18:45:33,591 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,592 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,592 ^~~~~~ 2022-10-25T18:45:33,593 P7_GMX 2022-10-25T18:45:33,594 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,595 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,595 ^~~~~~ 2022-10-25T18:45:33,596 P7_GMX 2022-10-25T18:45:33,597 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,598 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,598 ^~~~~~ 2022-10-25T18:45:33,599 P7_GMX 2022-10-25T18:45:33,599 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,599 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,600 ^~~~~~ 2022-10-25T18:45:33,600 P7_GMX 2022-10-25T18:45:33,603 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,603 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:33,604 ^~~~~~~~~~~ 2022-10-25T18:45:33,604 P7_PROFILE 2022-10-25T18:45:33,604 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,605 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:33,605 ^~~~~~~~~~~ 2022-10-25T18:45:33,606 P7_PROFILE 2022-10-25T18:45:33,606 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,607 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:33,607 ^~~~~~~~~~~ 2022-10-25T18:45:33,607 P7_PROFILE 2022-10-25T18:45:33,608 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,608 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:33,609 ^~~~~~~~~~~ 2022-10-25T18:45:33,609 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,610 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:33,610 ^~~~~~~~~~~ 2022-10-25T18:45:33,611 P7_PROFILE 2022-10-25T18:45:33,611 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,612 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:33,612 ^~~~~~~~~~~ 2022-10-25T18:45:33,613 P7_PROFILE 2022-10-25T18:45:33,614 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,614 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:33,615 ^~~~~~~~~~~ 2022-10-25T18:45:33,616 P7_PROFILE 2022-10-25T18:45:33,616 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,617 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:33,617 ^~~~~~~~~~~ 2022-10-25T18:45:33,618 P7_PROFILE 2022-10-25T18:45:33,618 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,618 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:33,619 ^~~~~~~~~~~ 2022-10-25T18:45:33,619 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,620 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:33,621 ^~~~~~~~~~~ 2022-10-25T18:45:33,622 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,622 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:33,623 ^~~~~~~~~~~ 2022-10-25T18:45:33,624 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,625 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:33,625 ^~~~~~~~~~~ 2022-10-25T18:45:33,626 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,626 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:33,627 ^~~~~~~~~~~ 2022-10-25T18:45:33,627 P7_PROFILE 2022-10-25T18:45:33,628 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,628 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:33,629 ^~~~~~~~~~~ 2022-10-25T18:45:33,629 P7_PROFILE 2022-10-25T18:45:33,630 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-10-25T18:45:33,630 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,631 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:33,632 ^~~~~~~~~~~ 2022-10-25T18:45:33,632 P7_PROFILE 2022-10-25T18:45:33,633 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2022-10-25T18:45:33,634 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,635 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:33,636 ^~~~~~~~~~~ 2022-10-25T18:45:33,636 P7_PROFILE 2022-10-25T18:45:33,637 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,638 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:33,638 ^~~~~~~~~~~ 2022-10-25T18:45:33,639 P7_PROFILE 2022-10-25T18:45:33,640 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,641 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:33,642 ^~~~~~~~~~~ 2022-10-25T18:45:33,642 P7_PROFILE 2022-10-25T18:45:33,643 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,643 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:33,644 ^~~~~~~~~~~ 2022-10-25T18:45:33,644 P7_PROFILE 2022-10-25T18:45:33,644 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,645 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:33,645 ^~~~~~~~~~~ 2022-10-25T18:45:33,646 P7_PROFILE 2022-10-25T18:45:33,646 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,647 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,648 ^~~~~~~~~~~ 2022-10-25T18:45:33,649 P7_PROFILE 2022-10-25T18:45:33,649 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,650 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,650 ^~~~~~ 2022-10-25T18:45:33,651 P7_GMX 2022-10-25T18:45:33,652 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,653 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,653 ^~~~~~ 2022-10-25T18:45:33,654 P7_GMX 2022-10-25T18:45:33,654 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,655 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,655 ^~~~~~ 2022-10-25T18:45:33,656 P7_GMX 2022-10-25T18:45:33,656 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:33,657 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:33,657 ^~~~~~ 2022-10-25T18:45:33,658 P7_GMX 2022-10-25T18:45:33,659 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-10-25T18:45:33,659 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2022-10-25T18:45:33,659 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,660 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:33,660 ^~~~~~~~~~~ 2022-10-25T18:45:33,660 P7_PROFILE 2022-10-25T18:45:33,662 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,662 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:33,662 ^~~~~~~~~~~ 2022-10-25T18:45:33,663 P7_PROFILE 2022-10-25T18:45:33,664 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,664 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:33,665 ^~~~~~~~~~~ 2022-10-25T18:45:33,665 P7_PROFILE 2022-10-25T18:45:33,666 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,666 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:33,667 ^~~~~~~~~~~ 2022-10-25T18:45:33,667 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,668 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:33,668 ^~~~~~~~~~~ 2022-10-25T18:45:33,669 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,669 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:33,669 ^~~~~~~~~~~ 2022-10-25T18:45:33,670 P7_PROFILE 2022-10-25T18:45:33,670 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-10-25T18:45:33,671 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,684 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:33,684 ^~~~~~~~~~~ 2022-10-25T18:45:33,685 P7_PROFILE 2022-10-25T18:45:33,685 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2022-10-25T18:45:33,686 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,686 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:33,686 ^~~~~~~~~~~ 2022-10-25T18:45:33,687 P7_PROFILE 2022-10-25T18:45:33,687 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-10-25T18:45:33,687 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2022-10-25T18:45:33,791 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-10-25T18:45:33,793 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2022-10-25T18:45:33,813 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-10-25T18:45:33,815 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2022-10-25T18:45:33,967 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-10-25T18:45:33,968 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:33,968 #error "No vector implementation enabled" 2022-10-25T18:45:33,968 ^~~~~ 2022-10-25T18:45:33,969 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,970 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:33,970 ^~~~~~ 2022-10-25T18:45:33,971 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,971 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:33,972 ^~~~~~ 2022-10-25T18:45:33,972 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,973 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:33,973 ^~~~~~ 2022-10-25T18:45:33,974 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:33,974 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:33,975 ^~~~~~ 2022-10-25T18:45:33,976 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,977 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:33,977 ^~~~~~~~~~~ 2022-10-25T18:45:33,978 P7_PROFILE 2022-10-25T18:45:33,979 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,979 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:33,980 ^~~~~~~~~~~ 2022-10-25T18:45:33,981 P7_PROFILE 2022-10-25T18:45:33,984 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,985 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:33,985 ^~~~~~~~~~~ 2022-10-25T18:45:33,986 P7_PROFILE 2022-10-25T18:45:33,986 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:33,986 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:33,987 ^~~~~~~~~~~ 2022-10-25T18:45:33,988 P7_PROFILE 2022-10-25T18:45:33,992 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:33,996 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:33,996 ^~~~~~~~~~~ 2022-10-25T18:45:33,996 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-10-25T18:45:33,997 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-10-25T18:45:33,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2022-10-25T18:45:33,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2022-10-25T18:45:34,001 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,002 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:34,003 ^~~~~~~~~~~ 2022-10-25T18:45:34,003 P7_PROFILE 2022-10-25T18:45:34,012 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,013 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:34,014 ^~~~~~~~~~~ 2022-10-25T18:45:34,015 P7_PROFILE 2022-10-25T18:45:34,017 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,018 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,018 ^~~~~~~~~~~ 2022-10-25T18:45:34,019 P7_PROFILE 2022-10-25T18:45:34,020 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,020 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,021 ^~~~~~ 2022-10-25T18:45:34,022 P7_GMX 2022-10-25T18:45:34,023 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,023 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,024 ^~~~~~ 2022-10-25T18:45:34,024 P7_GMX 2022-10-25T18:45:34,026 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,027 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,027 ^~~~~~ 2022-10-25T18:45:34,027 P7_GMX 2022-10-25T18:45:34,029 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,030 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,030 ^~~~~~ 2022-10-25T18:45:34,031 P7_GMX 2022-10-25T18:45:34,036 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,037 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:34,038 ^~~~~~~~~~~ 2022-10-25T18:45:34,039 P7_PROFILE 2022-10-25T18:45:34,041 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,042 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:34,043 ^~~~~~~~~~~ 2022-10-25T18:45:34,043 P7_PROFILE 2022-10-25T18:45:34,044 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,045 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:34,046 ^~~~~~~~~~~ 2022-10-25T18:45:34,047 P7_PROFILE 2022-10-25T18:45:34,047 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,048 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:34,048 ^~~~~~~~~~~ 2022-10-25T18:45:34,049 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,052 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:34,053 ^~~~~~~~~~~ 2022-10-25T18:45:34,054 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,056 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:34,058 ^~~~~~~~~~~ 2022-10-25T18:45:34,062 P7_PROFILE 2022-10-25T18:45:34,063 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,064 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:34,064 ^~~~~~~~~~~ 2022-10-25T18:45:34,067 P7_PROFILE 2022-10-25T18:45:34,068 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,069 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:34,071 ^~~~~~~~~~~ 2022-10-25T18:45:34,072 P7_PROFILE 2022-10-25T18:45:34,107 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-10-25T18:45:34,109 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2022-10-25T18:45:34,196 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-10-25T18:45:34,196 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:34,197 #error "No vector implementation enabled" 2022-10-25T18:45:34,197 ^~~~~ 2022-10-25T18:45:34,198 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,198 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:34,199 ^~~~~~ 2022-10-25T18:45:34,200 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,200 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:34,201 ^~~~~~ 2022-10-25T18:45:34,202 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,202 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:34,203 ^~~~~~ 2022-10-25T18:45:34,204 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,204 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:34,205 ^~~~~~ 2022-10-25T18:45:34,206 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,206 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:34,209 ^~~~~~~~~~~ 2022-10-25T18:45:34,211 P7_PROFILE 2022-10-25T18:45:34,212 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,213 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:34,213 ^~~~~~~~~~~ 2022-10-25T18:45:34,214 P7_PROFILE 2022-10-25T18:45:34,214 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,214 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:34,215 ^~~~~~~~~~~ 2022-10-25T18:45:34,215 P7_PROFILE 2022-10-25T18:45:34,216 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,216 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:34,217 ^~~~~~~~~~~ 2022-10-25T18:45:34,217 P7_PROFILE 2022-10-25T18:45:34,217 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,218 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:34,218 ^~~~~~~~~~~ 2022-10-25T18:45:34,226 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,227 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:34,228 ^~~~~~~~~~~ 2022-10-25T18:45:34,228 P7_PROFILE 2022-10-25T18:45:34,229 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,231 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:34,241 ^~~~~~~~~~~ 2022-10-25T18:45:34,242 P7_PROFILE 2022-10-25T18:45:34,243 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,243 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,244 ^~~~~~~~~~~ 2022-10-25T18:45:34,245 P7_PROFILE 2022-10-25T18:45:34,245 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,245 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,246 ^~~~~~ 2022-10-25T18:45:34,247 P7_GMX 2022-10-25T18:45:34,248 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,248 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,249 ^~~~~~ 2022-10-25T18:45:34,250 P7_GMX 2022-10-25T18:45:34,251 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,252 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,252 ^~~~~~ 2022-10-25T18:45:34,253 P7_GMX 2022-10-25T18:45:34,254 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,255 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,255 ^~~~~~ 2022-10-25T18:45:34,256 P7_GMX 2022-10-25T18:45:34,257 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,257 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:34,258 ^~~~~~~~~~~ 2022-10-25T18:45:34,259 P7_PROFILE 2022-10-25T18:45:34,260 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,260 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:34,261 ^~~~~~~~~~~ 2022-10-25T18:45:34,261 P7_PROFILE 2022-10-25T18:45:34,263 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,263 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:34,264 ^~~~~~~~~~~ 2022-10-25T18:45:34,265 P7_PROFILE 2022-10-25T18:45:34,265 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,266 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:34,266 ^~~~~~~~~~~ 2022-10-25T18:45:34,267 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,267 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:34,267 ^~~~~~~~~~~ 2022-10-25T18:45:34,268 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,268 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:34,269 ^~~~~~~~~~~ 2022-10-25T18:45:34,269 P7_PROFILE 2022-10-25T18:45:34,270 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,271 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:34,272 ^~~~~~~~~~~ 2022-10-25T18:45:34,273 P7_PROFILE 2022-10-25T18:45:34,274 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,275 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:34,275 ^~~~~~~~~~~ 2022-10-25T18:45:34,276 P7_PROFILE 2022-10-25T18:45:34,315 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-10-25T18:45:34,315 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2022-10-25T18:45:34,469 In file included from vendor/hmmer/src/hmmer.c:18: 2022-10-25T18:45:34,470 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:34,471 #error "No vector implementation enabled" 2022-10-25T18:45:34,472 ^~~~~ 2022-10-25T18:45:34,472 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,473 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:34,474 ^~~~~~ 2022-10-25T18:45:34,474 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,476 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:34,476 ^~~~~~ 2022-10-25T18:45:34,477 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,478 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:34,479 ^~~~~~ 2022-10-25T18:45:34,480 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,480 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:34,481 ^~~~~~ 2022-10-25T18:45:34,483 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,483 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:34,485 ^~~~~~~~~~~ 2022-10-25T18:45:34,485 P7_PROFILE 2022-10-25T18:45:34,486 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,487 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:34,488 ^~~~~~~~~~~ 2022-10-25T18:45:34,489 P7_PROFILE 2022-10-25T18:45:34,490 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,491 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:34,492 ^~~~~~~~~~~ 2022-10-25T18:45:34,492 P7_PROFILE 2022-10-25T18:45:34,493 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,494 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:34,494 ^~~~~~~~~~~ 2022-10-25T18:45:34,495 P7_PROFILE 2022-10-25T18:45:34,496 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,496 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:34,497 ^~~~~~~~~~~ 2022-10-25T18:45:34,498 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,499 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:34,500 ^~~~~~~~~~~ 2022-10-25T18:45:34,500 P7_PROFILE 2022-10-25T18:45:34,501 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,502 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:34,503 ^~~~~~~~~~~ 2022-10-25T18:45:34,504 P7_PROFILE 2022-10-25T18:45:34,505 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,506 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,507 ^~~~~~~~~~~ 2022-10-25T18:45:34,508 P7_PROFILE 2022-10-25T18:45:34,510 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,510 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,511 ^~~~~~ 2022-10-25T18:45:34,511 P7_GMX 2022-10-25T18:45:34,512 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,513 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,514 ^~~~~~ 2022-10-25T18:45:34,515 P7_GMX 2022-10-25T18:45:34,516 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,517 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,518 ^~~~~~ 2022-10-25T18:45:34,518 P7_GMX 2022-10-25T18:45:34,519 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,520 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,521 ^~~~~~ 2022-10-25T18:45:34,523 P7_GMX 2022-10-25T18:45:34,525 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,526 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:34,527 ^~~~~~~~~~~ 2022-10-25T18:45:34,528 P7_PROFILE 2022-10-25T18:45:34,530 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,531 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:34,532 ^~~~~~~~~~~ 2022-10-25T18:45:34,533 P7_PROFILE 2022-10-25T18:45:34,534 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,535 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:34,536 ^~~~~~~~~~~ 2022-10-25T18:45:34,536 P7_PROFILE 2022-10-25T18:45:34,537 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,538 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:34,539 ^~~~~~~~~~~ 2022-10-25T18:45:34,539 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,540 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:34,541 ^~~~~~~~~~~ 2022-10-25T18:45:34,541 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,542 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:34,542 ^~~~~~~~~~~ 2022-10-25T18:45:34,542 P7_PROFILE 2022-10-25T18:45:34,543 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,543 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:34,544 ^~~~~~~~~~~ 2022-10-25T18:45:34,544 P7_PROFILE 2022-10-25T18:45:34,548 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,549 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:34,550 ^~~~~~~~~~~ 2022-10-25T18:45:34,550 P7_PROFILE 2022-10-25T18:45:34,570 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-10-25T18:45:34,572 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2022-10-25T18:45:34,604 In file included from vendor/hmmer/src/tracealign.c:15: 2022-10-25T18:45:34,605 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:34,605 #error "No vector implementation enabled" 2022-10-25T18:45:34,605 ^~~~~ 2022-10-25T18:45:34,607 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,607 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:34,608 ^~~~~~ 2022-10-25T18:45:34,609 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,610 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:34,611 ^~~~~~ 2022-10-25T18:45:34,611 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,612 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:34,612 ^~~~~~ 2022-10-25T18:45:34,613 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,614 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:34,614 ^~~~~~ 2022-10-25T18:45:34,615 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,616 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:34,617 ^~~~~~~~~~~ 2022-10-25T18:45:34,619 P7_PROFILE 2022-10-25T18:45:34,620 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,621 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:34,622 ^~~~~~~~~~~ 2022-10-25T18:45:34,623 P7_PROFILE 2022-10-25T18:45:34,624 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,625 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:34,626 ^~~~~~~~~~~ 2022-10-25T18:45:34,627 P7_PROFILE 2022-10-25T18:45:34,628 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,628 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:34,629 ^~~~~~~~~~~ 2022-10-25T18:45:34,630 P7_PROFILE 2022-10-25T18:45:34,630 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,632 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:34,632 ^~~~~~~~~~~ 2022-10-25T18:45:34,633 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,634 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:34,635 ^~~~~~~~~~~ 2022-10-25T18:45:34,635 P7_PROFILE 2022-10-25T18:45:34,636 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,636 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:34,637 ^~~~~~~~~~~ 2022-10-25T18:45:34,638 P7_PROFILE 2022-10-25T18:45:34,639 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-10-25T18:45:34,640 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:34,641 #error "No vector implementation enabled" 2022-10-25T18:45:34,642 ^~~~~ 2022-10-25T18:45:34,643 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,643 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,644 ^~~~~~~~~~~ 2022-10-25T18:45:34,644 P7_PROFILE 2022-10-25T18:45:34,645 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,646 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:34,647 ^~~~~~ 2022-10-25T18:45:34,647 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,648 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:34,650 ^~~~~~ 2022-10-25T18:45:34,651 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,652 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:34,653 ^~~~~~ 2022-10-25T18:45:34,653 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,654 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:34,655 ^~~~~~ 2022-10-25T18:45:34,655 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,655 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,656 ^~~~~~ 2022-10-25T18:45:34,656 P7_GMX 2022-10-25T18:45:34,657 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,658 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,658 ^~~~~~ 2022-10-25T18:45:34,659 P7_GMX 2022-10-25T18:45:34,659 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,660 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:34,660 ^~~~~~~~~~~ 2022-10-25T18:45:34,660 P7_PROFILE 2022-10-25T18:45:34,661 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,662 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:34,671 ^~~~~~~~~~~ 2022-10-25T18:45:34,672 P7_PROFILE 2022-10-25T18:45:34,673 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,674 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:34,674 ^~~~~~~~~~~ 2022-10-25T18:45:34,675 P7_PROFILE 2022-10-25T18:45:34,675 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,676 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:34,677 ^~~~~~~~~~~ 2022-10-25T18:45:34,678 P7_PROFILE 2022-10-25T18:45:34,678 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,679 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,679 ^~~~~~ 2022-10-25T18:45:34,679 P7_GMX 2022-10-25T18:45:34,680 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,681 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:34,682 ^~~~~~~~~~~ 2022-10-25T18:45:34,683 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,684 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,685 ^~~~~~ 2022-10-25T18:45:34,686 P7_GMX 2022-10-25T18:45:34,686 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,687 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:34,688 ^~~~~~~~~~~ 2022-10-25T18:45:34,689 P7_PROFILE 2022-10-25T18:45:34,689 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,690 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:34,690 ^~~~~~~~~~~ 2022-10-25T18:45:34,691 P7_PROFILE 2022-10-25T18:45:34,692 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,692 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,692 ^~~~~~~~~~~ 2022-10-25T18:45:34,693 P7_PROFILE 2022-10-25T18:45:34,694 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,695 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,695 ^~~~~~ 2022-10-25T18:45:34,696 P7_GMX 2022-10-25T18:45:34,696 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,697 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:34,698 ^~~~~~~~~~~ 2022-10-25T18:45:34,698 P7_PROFILE 2022-10-25T18:45:34,699 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,700 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,701 ^~~~~~ 2022-10-25T18:45:34,702 P7_GMX 2022-10-25T18:45:34,703 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,703 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:34,704 ^~~~~~~~~~~ 2022-10-25T18:45:34,705 P7_PROFILE 2022-10-25T18:45:34,706 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,707 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,708 ^~~~~~ 2022-10-25T18:45:34,709 P7_GMX 2022-10-25T18:45:34,709 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,710 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,711 ^~~~~~ 2022-10-25T18:45:34,711 P7_GMX 2022-10-25T18:45:34,712 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,712 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:34,713 ^~~~~~~~~~~ 2022-10-25T18:45:34,713 P7_PROFILE 2022-10-25T18:45:34,714 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,714 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:34,714 ^~~~~~~~~~~ 2022-10-25T18:45:34,715 P7_PROFILE 2022-10-25T18:45:34,716 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,716 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:34,717 ^~~~~~~~~~~ 2022-10-25T18:45:34,718 P7_PROFILE 2022-10-25T18:45:34,719 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,720 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:34,721 ^~~~~~~~~~~ 2022-10-25T18:45:34,722 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,723 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:34,723 ^~~~~~~~~~~ 2022-10-25T18:45:34,724 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,724 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:34,725 ^~~~~~~~~~~ 2022-10-25T18:45:34,725 P7_PROFILE 2022-10-25T18:45:34,726 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,726 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:34,727 ^~~~~~~~~~~ 2022-10-25T18:45:34,727 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,728 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:34,728 ^~~~~~~~~~~ 2022-10-25T18:45:34,728 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,729 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:34,730 ^~~~~~~~~~~ 2022-10-25T18:45:34,730 P7_PROFILE 2022-10-25T18:45:34,731 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,732 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:34,733 ^~~~~~~~~~~ 2022-10-25T18:45:34,735 P7_PROFILE 2022-10-25T18:45:34,735 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,736 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:34,737 ^~~~~~~~~~~ 2022-10-25T18:45:34,737 P7_PROFILE 2022-10-25T18:45:34,738 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,739 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:34,739 ^~~~~~~~~~~ 2022-10-25T18:45:34,740 P7_PROFILE 2022-10-25T18:45:34,740 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,741 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:34,741 ^~~~~~~~~~~ 2022-10-25T18:45:34,743 P7_PROFILE 2022-10-25T18:45:34,744 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,745 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:34,745 ^~~~~~~~~~~ 2022-10-25T18:45:34,746 P7_PROFILE 2022-10-25T18:45:34,747 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-10-25T18:45:34,747 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,747 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-10-25T18:45:34,748 ^~~~~~ 2022-10-25T18:45:34,748 P7_GMX 2022-10-25T18:45:34,749 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,750 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-10-25T18:45:34,750 ^~~~~~ 2022-10-25T18:45:34,751 P7_GMX 2022-10-25T18:45:34,751 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,752 P7_OPROFILE *om = NULL; 2022-10-25T18:45:34,752 ^~~~~~~~~~~ 2022-10-25T18:45:34,753 P7_PROFILE 2022-10-25T18:45:34,753 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,754 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-10-25T18:45:34,755 ^~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,755 p7_profile_Create 2022-10-25T18:45:34,756 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-10-25T18:45:34,756 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-10-25T18:45:34,757 ^ 2022-10-25T18:45:34,757 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,758 p7_oprofile_Convert(gm, om); 2022-10-25T18:45:34,758 ^~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,759 p7_profile_Compare 2022-10-25T18:45:34,759 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-10-25T18:45:34,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2022-10-25T18:45:34,760 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,761 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-10-25T18:45:34,761 ^~~~~~~~~~~~~ 2022-10-25T18:45:34,762 p7_gmx_Create 2022-10-25T18:45:34,762 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-10-25T18:45:34,762 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-10-25T18:45:34,763 ^ 2022-10-25T18:45:34,763 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-10-25T18:45:34,763 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-10-25T18:45:34,764 ^ 2022-10-25T18:45:34,765 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,765 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-10-25T18:45:34,766 ^~~~~~~~~~~~~ 2022-10-25T18:45:34,767 p7_gmx_GrowTo 2022-10-25T18:45:34,769 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,770 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-10-25T18:45:34,771 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,771 p7_ReconfigLength 2022-10-25T18:45:34,772 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,774 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-10-25T18:45:34,774 ^~~~~~~~~~ 2022-10-25T18:45:34,775 p7_GForward 2022-10-25T18:45:34,776 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,777 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-10-25T18:45:34,778 ^~~~~~~~~~~ 2022-10-25T18:45:34,778 p7_GBackward 2022-10-25T18:45:34,780 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,780 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-10-25T18:45:34,781 ^~~~~~~~~~~ 2022-10-25T18:45:34,782 p7_GDecoding 2022-10-25T18:45:34,785 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,786 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-10-25T18:45:34,787 ^~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,788 p7_GOptimalAccuracy 2022-10-25T18:45:34,789 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,789 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-10-25T18:45:34,790 ^~~~~~~~~~ 2022-10-25T18:45:34,790 p7_GOATrace 2022-10-25T18:45:34,794 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,795 p7_omx_Reuse(oxf); 2022-10-25T18:45:34,795 ^~~~~~~~~~~~ 2022-10-25T18:45:34,796 p7_gmx_Reuse 2022-10-25T18:45:34,798 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,799 p7_omx_Destroy(oxf); 2022-10-25T18:45:34,801 ^~~~~~~~~~~~~~ 2022-10-25T18:45:34,802 p7_gmx_Destroy 2022-10-25T18:45:34,802 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-10-25T18:45:34,803 p7_oprofile_Destroy(om); 2022-10-25T18:45:34,804 ^~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,805 p7_profile_Destroy 2022-10-25T18:45:34,820 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-10-25T18:45:34,821 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:34,822 #error "No vector implementation enabled" 2022-10-25T18:45:34,823 ^~~~~ 2022-10-25T18:45:34,823 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,824 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:34,825 ^~~~~~ 2022-10-25T18:45:34,825 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,826 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:34,826 ^~~~~~ 2022-10-25T18:45:34,827 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,828 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:34,828 ^~~~~~ 2022-10-25T18:45:34,829 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:34,831 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:34,831 ^~~~~~ 2022-10-25T18:45:34,832 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,833 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:34,834 ^~~~~~~~~~~ 2022-10-25T18:45:34,835 P7_PROFILE 2022-10-25T18:45:34,836 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,838 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:34,839 ^~~~~~~~~~~ 2022-10-25T18:45:34,840 P7_PROFILE 2022-10-25T18:45:34,841 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,841 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:34,842 ^~~~~~~~~~~ 2022-10-25T18:45:34,843 P7_PROFILE 2022-10-25T18:45:34,843 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,844 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:34,844 ^~~~~~~~~~~ 2022-10-25T18:45:34,845 P7_PROFILE 2022-10-25T18:45:34,846 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,846 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:34,847 ^~~~~~~~~~~ 2022-10-25T18:45:34,851 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,852 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:34,853 ^~~~~~~~~~~ 2022-10-25T18:45:34,853 P7_PROFILE 2022-10-25T18:45:34,854 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,855 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:34,855 ^~~~~~~~~~~ 2022-10-25T18:45:34,856 P7_PROFILE 2022-10-25T18:45:34,858 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,859 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,860 ^~~~~~~~~~~ 2022-10-25T18:45:34,860 P7_PROFILE 2022-10-25T18:45:34,862 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,863 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,864 ^~~~~~ 2022-10-25T18:45:34,864 P7_GMX 2022-10-25T18:45:34,865 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,866 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,866 ^~~~~~ 2022-10-25T18:45:34,867 P7_GMX 2022-10-25T18:45:34,868 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,870 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,870 ^~~~~~ 2022-10-25T18:45:34,870 P7_GMX 2022-10-25T18:45:34,871 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:34,872 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:34,872 ^~~~~~ 2022-10-25T18:45:34,872 P7_GMX 2022-10-25T18:45:34,877 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,878 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:34,878 ^~~~~~~~~~~ 2022-10-25T18:45:34,879 P7_PROFILE 2022-10-25T18:45:34,880 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,881 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:34,882 ^~~~~~~~~~~ 2022-10-25T18:45:34,883 P7_PROFILE 2022-10-25T18:45:34,884 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,885 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:34,886 ^~~~~~~~~~~ 2022-10-25T18:45:34,887 P7_PROFILE 2022-10-25T18:45:34,888 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,888 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:34,889 ^~~~~~~~~~~ 2022-10-25T18:45:34,890 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:34,890 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:34,891 ^~~~~~~~~~~ 2022-10-25T18:45:34,892 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,893 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:34,893 ^~~~~~~~~~~ 2022-10-25T18:45:34,894 P7_PROFILE 2022-10-25T18:45:34,894 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,895 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:34,895 ^~~~~~~~~~~ 2022-10-25T18:45:34,895 P7_PROFILE 2022-10-25T18:45:34,900 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:34,900 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:34,901 ^~~~~~~~~~~ 2022-10-25T18:45:34,901 P7_PROFILE 2022-10-25T18:45:34,923 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-10-25T18:45:34,932 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,932 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-10-25T18:45:34,933 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,933 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,934 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-10-25T18:45:34,934 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,934 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,935 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-10-25T18:45:34,935 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,936 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,936 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-10-25T18:45:34,937 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,937 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,938 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-10-25T18:45:34,938 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,939 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,939 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-10-25T18:45:34,939 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,940 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:34,940 if (ser_size != ptr - (*buf + *n)){ 2022-10-25T18:45:34,941 ^~ 2022-10-25T18:45:34,941 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-10-25T18:45:34,942 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,942 ret_obj->envsc = *((float *) &host_32bit); 2022-10-25T18:45:34,943 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,944 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,944 ret_obj->domcorrection = *((float *) &host_32bit); 2022-10-25T18:45:34,944 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,945 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,945 ret_obj->dombias = *((float *) &host_32bit); 2022-10-25T18:45:34,946 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,946 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,947 ret_obj->oasc = *((float *) &host_32bit); 2022-10-25T18:45:34,947 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,947 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,948 ret_obj->bitscore = *((float *) &host_32bit); 2022-10-25T18:45:34,948 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,949 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,949 ret_obj->lnP = *((double *) &host_64bit); 2022-10-25T18:45:34,950 ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,951 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:45:34,952 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-10-25T18:45:34,953 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:34,954 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:34,954 if(ptr - (buf + *n) != obj_size){ 2022-10-25T18:45:34,955 ^~ 2022-10-25T18:45:34,967 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-10-25T18:45:34,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2022-10-25T18:45:34,981 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-10-25T18:45:34,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2022-10-25T18:45:35,124 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-10-25T18:45:35,125 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:35,126 #error "No vector implementation enabled" 2022-10-25T18:45:35,126 ^~~~~ 2022-10-25T18:45:35,127 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,128 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:35,129 ^~~~~~ 2022-10-25T18:45:35,129 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,131 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:35,132 ^~~~~~ 2022-10-25T18:45:35,133 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,134 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:35,135 ^~~~~~ 2022-10-25T18:45:35,136 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,139 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:35,141 ^~~~~~ 2022-10-25T18:45:35,142 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,144 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:35,145 ^~~~~~~~~~~ 2022-10-25T18:45:35,145 P7_PROFILE 2022-10-25T18:45:35,148 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,150 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:35,150 ^~~~~~~~~~~ 2022-10-25T18:45:35,151 P7_PROFILE 2022-10-25T18:45:35,151 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,153 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:35,154 ^~~~~~~~~~~ 2022-10-25T18:45:35,154 P7_PROFILE 2022-10-25T18:45:35,155 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,156 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:35,157 ^~~~~~~~~~~ 2022-10-25T18:45:35,157 P7_PROFILE 2022-10-25T18:45:35,158 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,159 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:35,160 ^~~~~~~~~~~ 2022-10-25T18:45:35,161 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,162 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:35,163 ^~~~~~~~~~~ 2022-10-25T18:45:35,164 P7_PROFILE 2022-10-25T18:45:35,164 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,165 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:35,166 ^~~~~~~~~~~ 2022-10-25T18:45:35,167 P7_PROFILE 2022-10-25T18:45:35,167 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,168 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,168 ^~~~~~~~~~~ 2022-10-25T18:45:35,169 P7_PROFILE 2022-10-25T18:45:35,170 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,170 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,171 ^~~~~~ 2022-10-25T18:45:35,171 P7_GMX 2022-10-25T18:45:35,172 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,172 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,173 ^~~~~~ 2022-10-25T18:45:35,173 P7_GMX 2022-10-25T18:45:35,173 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,174 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,175 ^~~~~~ 2022-10-25T18:45:35,176 P7_GMX 2022-10-25T18:45:35,177 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,177 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,178 ^~~~~~ 2022-10-25T18:45:35,180 P7_GMX 2022-10-25T18:45:35,181 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,182 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:35,182 ^~~~~~~~~~~ 2022-10-25T18:45:35,183 P7_PROFILE 2022-10-25T18:45:35,184 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,184 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:35,184 ^~~~~~~~~~~ 2022-10-25T18:45:35,185 P7_PROFILE 2022-10-25T18:45:35,186 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,186 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:35,187 ^~~~~~~~~~~ 2022-10-25T18:45:35,189 P7_PROFILE 2022-10-25T18:45:35,189 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,190 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:35,191 ^~~~~~~~~~~ 2022-10-25T18:45:35,191 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,192 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:35,193 ^~~~~~~~~~~ 2022-10-25T18:45:35,193 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,194 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:35,195 ^~~~~~~~~~~ 2022-10-25T18:45:35,196 P7_PROFILE 2022-10-25T18:45:35,203 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,204 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:35,204 ^~~~~~~~~~~ 2022-10-25T18:45:35,205 P7_PROFILE 2022-10-25T18:45:35,210 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,212 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:35,212 ^~~~~~~~~~~ 2022-10-25T18:45:35,213 P7_PROFILE 2022-10-25T18:45:35,263 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-10-25T18:45:35,265 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2022-10-25T18:45:35,359 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-10-25T18:45:35,360 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:35,360 #error "No vector implementation enabled" 2022-10-25T18:45:35,361 ^~~~~ 2022-10-25T18:45:35,362 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,363 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:35,363 ^~~~~~ 2022-10-25T18:45:35,364 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,364 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:35,366 ^~~~~~ 2022-10-25T18:45:35,366 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,367 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:35,370 ^~~~~~ 2022-10-25T18:45:35,370 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,372 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:35,373 ^~~~~~ 2022-10-25T18:45:35,374 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,374 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:35,375 ^~~~~~~~~~~ 2022-10-25T18:45:35,376 P7_PROFILE 2022-10-25T18:45:35,376 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,377 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:35,377 ^~~~~~~~~~~ 2022-10-25T18:45:35,377 P7_PROFILE 2022-10-25T18:45:35,378 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,378 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:35,379 ^~~~~~~~~~~ 2022-10-25T18:45:35,379 P7_PROFILE 2022-10-25T18:45:35,380 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,380 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:35,381 ^~~~~~~~~~~ 2022-10-25T18:45:35,381 P7_PROFILE 2022-10-25T18:45:35,382 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,382 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:35,383 ^~~~~~~~~~~ 2022-10-25T18:45:35,386 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,387 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:35,388 ^~~~~~~~~~~ 2022-10-25T18:45:35,388 P7_PROFILE 2022-10-25T18:45:35,389 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,390 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:35,391 ^~~~~~~~~~~ 2022-10-25T18:45:35,392 P7_PROFILE 2022-10-25T18:45:35,394 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,395 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,396 ^~~~~~~~~~~ 2022-10-25T18:45:35,396 P7_PROFILE 2022-10-25T18:45:35,397 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,398 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,399 ^~~~~~ 2022-10-25T18:45:35,400 P7_GMX 2022-10-25T18:45:35,401 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,402 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,402 ^~~~~~ 2022-10-25T18:45:35,403 P7_GMX 2022-10-25T18:45:35,404 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,405 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,406 ^~~~~~ 2022-10-25T18:45:35,407 P7_GMX 2022-10-25T18:45:35,408 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,408 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,409 ^~~~~~ 2022-10-25T18:45:35,409 P7_GMX 2022-10-25T18:45:35,410 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-10-25T18:45:35,411 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:35,412 #error "No vector implementation enabled" 2022-10-25T18:45:35,412 ^~~~~ 2022-10-25T18:45:35,413 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,414 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:35,415 ^~~~~~ 2022-10-25T18:45:35,416 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,417 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:35,417 ^~~~~~ 2022-10-25T18:45:35,418 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,419 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:35,420 ^~~~~~ 2022-10-25T18:45:35,420 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,421 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:35,422 ^~~~~~ 2022-10-25T18:45:35,423 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,425 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:35,426 ^~~~~~~~~~~ 2022-10-25T18:45:35,426 P7_PROFILE 2022-10-25T18:45:35,427 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,428 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:35,429 ^~~~~~~~~~~ 2022-10-25T18:45:35,429 P7_PROFILE 2022-10-25T18:45:35,430 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,431 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:35,431 ^~~~~~~~~~~ 2022-10-25T18:45:35,432 P7_PROFILE 2022-10-25T18:45:35,432 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,433 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:35,433 ^~~~~~~~~~~ 2022-10-25T18:45:35,434 P7_PROFILE 2022-10-25T18:45:35,434 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,434 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:35,435 ^~~~~~~~~~~ 2022-10-25T18:45:35,435 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,435 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:35,436 ^~~~~~~~~~~ 2022-10-25T18:45:35,437 P7_PROFILE 2022-10-25T18:45:35,438 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,438 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:35,439 ^~~~~~~~~~~ 2022-10-25T18:45:35,439 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,441 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:35,441 ^~~~~~~~~~~ 2022-10-25T18:45:35,442 P7_PROFILE 2022-10-25T18:45:35,443 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,444 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:35,444 ^~~~~~~~~~~ 2022-10-25T18:45:35,445 P7_PROFILE 2022-10-25T18:45:35,446 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,447 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:35,447 ^~~~~~~~~~~ 2022-10-25T18:45:35,447 P7_PROFILE 2022-10-25T18:45:35,448 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,449 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:35,450 ^~~~~~~~~~~ 2022-10-25T18:45:35,450 P7_PROFILE 2022-10-25T18:45:35,451 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,451 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:35,452 ^~~~~~~~~~~ 2022-10-25T18:45:35,453 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,453 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:35,454 ^~~~~~~~~~~ 2022-10-25T18:45:35,454 P7_PROFILE 2022-10-25T18:45:35,455 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-10-25T18:45:35,455 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,456 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-10-25T18:45:35,456 ^~~~~~~~~~~ 2022-10-25T18:45:35,457 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-10-25T18:45:35,458 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,458 P7_OPROFILE *om = NULL; /* target profile */ 2022-10-25T18:45:35,459 ^~~~~~~~~~~ 2022-10-25T18:45:35,459 P7_PROFILE 2022-10-25T18:45:35,460 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,461 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:35,462 ^~~~~~~~~~~ 2022-10-25T18:45:35,462 P7_PROFILE 2022-10-25T18:45:35,463 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-10-25T18:45:35,464 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,465 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:45:35,465 ^~~~~~~~~~~ 2022-10-25T18:45:35,466 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:45:35,466 if ( size <= 0 ) { \ 2022-10-25T18:45:35,467 ^~~~ 2022-10-25T18:45:35,468 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-10-25T18:45:35,468 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:45:35,469 ^~~~~~~~~~~ 2022-10-25T18:45:35,469 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:45:35,470 if ( size <= 0 ) { \ 2022-10-25T18:45:35,470 ^~~~ 2022-10-25T18:45:35,471 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-10-25T18:45:35,472 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:45:35,472 ^ 2022-10-25T18:45:35,473 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:45:35,474 if ( size <= 0 ) { \ 2022-10-25T18:45:35,475 ^~~~ 2022-10-25T18:45:35,476 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-10-25T18:45:35,477 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:45:35,477 ^ 2022-10-25T18:45:35,478 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:45:35,479 if ( ((p) = malloc(size)) == NULL) { \ 2022-10-25T18:45:35,480 ^~~~ 2022-10-25T18:45:35,481 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-10-25T18:45:35,482 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:45:35,483 ^ 2022-10-25T18:45:35,484 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:45:35,485 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-10-25T18:45:35,486 ^~~~ 2022-10-25T18:45:35,486 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,487 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:35,487 ^~~~~~~~~~~ 2022-10-25T18:45:35,488 P7_PROFILE 2022-10-25T18:45:35,489 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,490 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,491 ^~~~~~~~~~~ 2022-10-25T18:45:35,492 P7_PROFILE 2022-10-25T18:45:35,493 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-10-25T18:45:35,494 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-10-25T18:45:35,494 ^~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:35,495 p7_profile_Reuse 2022-10-25T18:45:35,495 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-10-25T18:45:35,496 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-10-25T18:45:35,496 ^~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:35,497 p7_profile_Reuse 2022-10-25T18:45:35,498 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-10-25T18:45:35,499 if (om) p7_oprofile_Destroy(om); 2022-10-25T18:45:35,499 ^~~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:35,500 p7_profile_Destroy 2022-10-25T18:45:35,501 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,502 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,502 ^~~~~~ 2022-10-25T18:45:35,503 P7_GMX 2022-10-25T18:45:35,503 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,503 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,504 ^~~~~~ 2022-10-25T18:45:35,505 P7_GMX 2022-10-25T18:45:35,505 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-10-25T18:45:35,506 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,506 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-10-25T18:45:35,507 ^~~~~~~~~~~ 2022-10-25T18:45:35,508 P7_PROFILE 2022-10-25T18:45:35,508 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-10-25T18:45:35,509 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-10-25T18:45:35,509 ^ 2022-10-25T18:45:35,511 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,511 for (i = 0; i < cache->n; i++) 2022-10-25T18:45:35,512 ^ 2022-10-25T18:45:35,512 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,513 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,514 ^~~~~~ 2022-10-25T18:45:35,515 P7_GMX 2022-10-25T18:45:35,516 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-10-25T18:45:35,516 n += p7_oprofile_Sizeof(cache->list[i]); 2022-10-25T18:45:35,517 ^~~~~~~~~~~~~~~~~~ 2022-10-25T18:45:35,518 p7_profile_Sizeof 2022-10-25T18:45:35,518 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,519 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,521 ^~~~~~ 2022-10-25T18:45:35,521 P7_GMX 2022-10-25T18:45:35,522 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-10-25T18:45:35,524 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,524 P7_OPROFILE *om; 2022-10-25T18:45:35,525 ^~~~~~~~~~~ 2022-10-25T18:45:35,526 P7_PROFILE 2022-10-25T18:45:35,527 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,528 for (i = 0; i < cache->n; i++) 2022-10-25T18:45:35,528 ^ 2022-10-25T18:45:35,529 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-10-25T18:45:35,530 if (om->name) free(om->name); 2022-10-25T18:45:35,531 ^~ 2022-10-25T18:45:35,531 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-10-25T18:45:35,532 if (om->name) free(om->name); 2022-10-25T18:45:35,533 ^~ 2022-10-25T18:45:35,534 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-10-25T18:45:35,534 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-10-25T18:45:35,535 ^~ 2022-10-25T18:45:35,536 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-10-25T18:45:35,536 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,536 for (i = 0; i < cache->n; i++) 2022-10-25T18:45:35,537 ^ 2022-10-25T18:45:35,537 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,538 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:35,538 ^~~~~~~~~~~ 2022-10-25T18:45:35,539 P7_PROFILE 2022-10-25T18:45:35,540 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-10-25T18:45:35,540 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:35,541 #error "No vector implementation enabled" 2022-10-25T18:45:35,541 ^~~~~ 2022-10-25T18:45:35,542 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,543 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:35,544 ^~~~~~~~~~~ 2022-10-25T18:45:35,544 P7_PROFILE 2022-10-25T18:45:35,545 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,545 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:35,547 ^~~~~~ 2022-10-25T18:45:35,548 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,548 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:35,549 ^~~~~~ 2022-10-25T18:45:35,550 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,550 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:35,551 ^~~~~~ 2022-10-25T18:45:35,552 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,553 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:35,553 ^~~~~~ 2022-10-25T18:45:35,554 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,555 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:35,555 ^~~~~~~~~~~ 2022-10-25T18:45:35,556 P7_PROFILE 2022-10-25T18:45:35,557 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,557 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:35,558 ^~~~~~~~~~~ 2022-10-25T18:45:35,559 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,560 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:35,561 ^~~~~~~~~~~ 2022-10-25T18:45:35,562 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,562 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:35,563 ^~~~~~~~~~~ 2022-10-25T18:45:35,563 P7_PROFILE 2022-10-25T18:45:35,564 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,565 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:35,565 ^~~~~~~~~~~ 2022-10-25T18:45:35,566 P7_PROFILE 2022-10-25T18:45:35,567 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,568 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:35,568 ^~~~~~~~~~~ 2022-10-25T18:45:35,570 P7_PROFILE 2022-10-25T18:45:35,570 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,571 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:35,572 ^~~~~~~~~~~ 2022-10-25T18:45:35,572 P7_PROFILE 2022-10-25T18:45:35,573 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,573 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:35,574 ^~~~~~~~~~~ 2022-10-25T18:45:35,575 P7_PROFILE 2022-10-25T18:45:35,576 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,576 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:35,577 ^~~~~~~~~~~ 2022-10-25T18:45:35,577 P7_PROFILE 2022-10-25T18:45:35,578 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,578 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:35,579 ^~~~~~~~~~~ 2022-10-25T18:45:35,579 P7_PROFILE 2022-10-25T18:45:35,580 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,581 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:35,581 ^~~~~~~~~~~ 2022-10-25T18:45:35,582 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,583 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:35,583 ^~~~~~~~~~~ 2022-10-25T18:45:35,584 P7_PROFILE 2022-10-25T18:45:35,585 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,585 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:35,586 ^~~~~~~~~~~ 2022-10-25T18:45:35,586 P7_PROFILE 2022-10-25T18:45:35,587 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,587 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,588 ^~~~~~~~~~~ 2022-10-25T18:45:35,588 P7_PROFILE 2022-10-25T18:45:35,589 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,590 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,590 ^~~~~~ 2022-10-25T18:45:35,591 P7_GMX 2022-10-25T18:45:35,592 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,592 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,593 ^~~~~~ 2022-10-25T18:45:35,594 P7_GMX 2022-10-25T18:45:35,594 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,595 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,596 ^~~~~~ 2022-10-25T18:45:35,596 P7_GMX 2022-10-25T18:45:35,597 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,597 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,598 ^~~~~~ 2022-10-25T18:45:35,599 P7_GMX 2022-10-25T18:45:35,599 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,600 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:35,600 ^~~~~~~~~~~ 2022-10-25T18:45:35,601 P7_PROFILE 2022-10-25T18:45:35,601 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,602 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:35,603 ^~~~~~~~~~~ 2022-10-25T18:45:35,604 P7_PROFILE 2022-10-25T18:45:35,604 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,605 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:35,605 ^~~~~~~~~~~ 2022-10-25T18:45:35,606 P7_PROFILE 2022-10-25T18:45:35,607 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,607 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:35,608 ^~~~~~~~~~~ 2022-10-25T18:45:35,608 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,608 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:35,609 ^~~~~~~~~~~ 2022-10-25T18:45:35,609 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,610 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:35,610 ^~~~~~~~~~~ 2022-10-25T18:45:35,610 P7_PROFILE 2022-10-25T18:45:35,611 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,611 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:35,612 ^~~~~~~~~~~ 2022-10-25T18:45:35,612 P7_PROFILE 2022-10-25T18:45:35,613 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,613 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:35,614 ^~~~~~~~~~~ 2022-10-25T18:45:35,614 P7_PROFILE 2022-10-25T18:45:35,774 In file included from vendor/hmmer/src/fm_general.c:14: 2022-10-25T18:45:35,775 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:45:35,775 #error "No vector implementation enabled" 2022-10-25T18:45:35,776 ^~~~~ 2022-10-25T18:45:35,777 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,777 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:45:35,778 ^~~~~~ 2022-10-25T18:45:35,778 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,778 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:45:35,779 ^~~~~~ 2022-10-25T18:45:35,779 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,779 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:45:35,780 ^~~~~~ 2022-10-25T18:45:35,780 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:45:35,781 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:45:35,781 ^~~~~~ 2022-10-25T18:45:35,783 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,784 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:45:35,784 ^~~~~~~~~~~ 2022-10-25T18:45:35,784 P7_PROFILE 2022-10-25T18:45:35,786 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,787 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:45:35,787 ^~~~~~~~~~~ 2022-10-25T18:45:35,787 P7_PROFILE 2022-10-25T18:45:35,789 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,790 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:45:35,790 ^~~~~~~~~~~ 2022-10-25T18:45:35,790 P7_PROFILE 2022-10-25T18:45:35,792 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,792 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:45:35,792 ^~~~~~~~~~~ 2022-10-25T18:45:35,793 P7_PROFILE 2022-10-25T18:45:35,795 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,795 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:45:35,796 ^~~~~~~~~~~ 2022-10-25T18:45:35,800 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,801 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:45:35,801 ^~~~~~~~~~~ 2022-10-25T18:45:35,802 P7_PROFILE 2022-10-25T18:45:35,803 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,804 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:45:35,804 ^~~~~~~~~~~ 2022-10-25T18:45:35,805 P7_PROFILE 2022-10-25T18:45:35,807 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,808 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,808 ^~~~~~~~~~~ 2022-10-25T18:45:35,808 P7_PROFILE 2022-10-25T18:45:35,810 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,811 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,811 ^~~~~~ 2022-10-25T18:45:35,812 P7_GMX 2022-10-25T18:45:35,813 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,814 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,815 ^~~~~~ 2022-10-25T18:45:35,815 P7_GMX 2022-10-25T18:45:35,817 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,818 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,818 ^~~~~~ 2022-10-25T18:45:35,819 P7_GMX 2022-10-25T18:45:35,820 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:45:35,821 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:45:35,821 ^~~~~~ 2022-10-25T18:45:35,822 P7_GMX 2022-10-25T18:45:35,826 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,827 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:45:35,827 ^~~~~~~~~~~ 2022-10-25T18:45:35,828 P7_PROFILE 2022-10-25T18:45:35,829 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,829 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:45:35,830 ^~~~~~~~~~~ 2022-10-25T18:45:35,831 P7_PROFILE 2022-10-25T18:45:35,832 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,833 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:45:35,833 ^~~~~~~~~~~ 2022-10-25T18:45:35,834 P7_PROFILE 2022-10-25T18:45:35,834 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,835 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:45:35,835 ^~~~~~~~~~~ 2022-10-25T18:45:35,835 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:45:35,836 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:45:35,836 ^~~~~~~~~~~ 2022-10-25T18:45:35,837 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,837 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:45:35,838 ^~~~~~~~~~~ 2022-10-25T18:45:35,838 P7_PROFILE 2022-10-25T18:45:35,839 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,840 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:45:35,840 ^~~~~~~~~~~ 2022-10-25T18:45:35,840 P7_PROFILE 2022-10-25T18:45:35,846 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:45:35,847 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:45:35,847 ^~~~~~~~~~~ 2022-10-25T18:45:35,847 P7_PROFILE 2022-10-25T18:45:35,856 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-10-25T18:45:35,857 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,857 if (ranges[lo].lower > end) return -1; 2022-10-25T18:45:35,857 ^ 2022-10-25T18:45:35,858 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,858 if (ranges[hi].upper < start) return -1; 2022-10-25T18:45:35,858 ^ 2022-10-25T18:45:35,859 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,859 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-10-25T18:45:35,859 ^ 2022-10-25T18:45:35,860 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,860 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-10-25T18:45:35,860 ^~ 2022-10-25T18:45:35,861 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,861 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-10-25T18:45:35,862 ^~ 2022-10-25T18:45:35,862 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,862 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-10-25T18:45:35,863 ^~ 2022-10-25T18:45:35,863 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,863 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-10-25T18:45:35,864 ^~ 2022-10-25T18:45:35,864 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-10-25T18:45:35,864 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-10-25T18:45:35,865 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-10-25T18:45:35,865 ^~ 2022-10-25T18:45:35,865 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,866 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-10-25T18:45:35,866 ^~ 2022-10-25T18:45:35,866 In file included from vendor/hmmer/src/fm_general.c:12: 2022-10-25T18:45:35,867 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:35,867 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:45:35,867 ^ 2022-10-25T18:45:35,868 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:45:35,868 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-10-25T18:45:35,868 ^~~~~~~ 2022-10-25T18:45:35,869 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:45:35,869 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:45:35,869 ^~~ 2022-10-25T18:45:35,870 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:45:35,870 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-10-25T18:45:35,870 ^~~~~~~ 2022-10-25T18:45:35,871 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:35,871 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-25T18:45:35,871 ^ 2022-10-25T18:45:35,872 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-10-25T18:45:35,872 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-10-25T18:45:35,872 ^~~~~~~ 2022-10-25T18:45:35,873 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:45:35,873 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-25T18:45:35,873 ^~~ 2022-10-25T18:45:35,874 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-10-25T18:45:35,874 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-10-25T18:45:35,874 ^~~~~~~ 2022-10-25T18:45:35,875 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:35,875 for (j= start; j<=end; j++) 2022-10-25T18:45:35,875 ^~ 2022-10-25T18:45:35,876 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-10-25T18:45:35,877 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-10-25T18:45:35,877 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-10-25T18:45:35,877 ^~ 2022-10-25T18:45:35,878 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-10-25T18:45:35,878 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-10-25T18:45:35,878 ^~ 2022-10-25T18:45:35,881 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-10-25T18:45:35,882 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,882 for (i=0; iseq_count; i++) { 2022-10-25T18:45:35,882 ^ 2022-10-25T18:45:35,887 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:35,887 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-10-25T18:45:35,887 ^~ 2022-10-25T18:45:35,888 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:35,888 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-10-25T18:45:35,888 ^~ 2022-10-25T18:45:35,889 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:35,889 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-10-25T18:45:35,889 ^~ 2022-10-25T18:45:35,890 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:45:35,890 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-10-25T18:45:35,890 ^~ 2022-10-25T18:45:35,891 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,891 for (i=0; iambig_list->count; i++) { 2022-10-25T18:45:35,891 ^ 2022-10-25T18:45:35,892 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,892 for (i=0; iseq_count; i++) 2022-10-25T18:45:35,893 ^ 2022-10-25T18:45:35,894 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-10-25T18:45:35,894 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:45:35,895 for (i=0; iseq_count; i++) { 2022-10-25T18:45:35,895 ^ 2022-10-25T18:45:35,951 ... yes 2022-10-25T18:45:35,952 checking whether can be included... yes 2022-10-25T18:45:35,952 checking whether can be included... yes 2022-10-25T18:45:35,952 checking whether can be included... yes 2022-10-25T18:45:35,953 checking whether can be included... yes 2022-10-25T18:45:35,953 checking whether can be included... yes 2022-10-25T18:45:35,953 checking whether can be included... yes 2022-10-25T18:45:35,954 checking whether can be included... yes 2022-10-25T18:45:35,954 checking whether can be included... yes 2022-10-25T18:45:35,954 checking whether function 'aligned_alloc' is available... no 2022-10-25T18:45:35,955 checking whether function 'erfc' is available... no 2022-10-25T18:45:35,955 checking whether function 'getpid' is available... yes 2022-10-25T18:45:35,955 checking whether function '_mm_malloc' is available... no 2022-10-25T18:45:35,955 checking whether function 'popen' is available... yes 2022-10-25T18:45:35,956 checking whether function 'posix_memalign' is available... yes 2022-10-25T18:45:35,956 checking whether function 'strcasecmp' is available... yes 2022-10-25T18:45:35,956 checking whether function 'strsep' is available... yes 2022-10-25T18:45:35,957 checking whether function 'sysconf' is available... yes 2022-10-25T18:45:35,957 checking whether function 'sysctl' is available... yes 2022-10-25T18:45:35,957 checking whether function 'times' is available... yes 2022-10-25T18:45:35,958 checking whether function 'fseeko' is available... yes 2022-10-25T18:45:35,958 checking whether can be included... yes 2022-10-25T18:45:35,958 checking whether can be included... yes 2022-10-25T18:45:35,959 checking whether can be included... yes 2022-10-25T18:45:35,959 checking whether can be included... yes 2022-10-25T18:45:35,959 checking whether can be included... yes 2022-10-25T18:45:35,959 checking whether can be included... yes 2022-10-25T18:45:35,960 checking whether can be included... yes 2022-10-25T18:45:35,960 checking whether can be included... yes 2022-10-25T18:45:35,960 checking whether function 'mkstemp' is available... yes 2022-10-25T18:45:35,961 checking whether function 'popen' is available... yes 2022-10-25T18:45:35,961 checking whether function 'putenv' is available... yes 2022-10-25T18:45:35,962 checking whether function 'strcasecmp' is available... yes 2022-10-25T18:45:35,962 checking whether function 'strsep' is available... yes 2022-10-25T18:45:35,963 checking whether function 'times' is available... yes 2022-10-25T18:45:35,963 checking whether function 'getpid' is available... yes 2022-10-25T18:45:35,964 checking whether function 'sysctl' is available... yes 2022-10-25T18:45:35,964 checking whether function 'sysconf' is available... yes 2022-10-25T18:45:35,964 checking whether function 'getcwd' is available... yes 2022-10-25T18:45:35,965 checking whether function 'chmod' is available... yes 2022-10-25T18:45:35,965 checking whether function 'stat' is available... yes 2022-10-25T18:45:35,966 checking whether function 'fstat' is available... yes 2022-10-25T18:45:35,966 checking whether function 'erfc' is available... no 2022-10-25T18:45:35,967 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-10-25T18:45:36,220 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-10-25T18:45:36,267 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpqj75uu_z[/] 2022-10-25T18:45:36,267 [bold magenta]cwd[/]: /tmp/pip-wheel-ozttw124/pyhmmer_99d2f3741b924c10b87728615a9020a9 2022-10-25T18:45:36,268 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-10-25T18:45:36,273 ERROR: Failed building wheel for pyhmmer 2022-10-25T18:45:36,278 Failed to build pyhmmer 2022-10-25T18:45:36,280 ERROR: Failed to build one or more wheels 2022-10-25T18:45:36,283 Exception information: 2022-10-25T18:45:36,283 Traceback (most recent call last): 2022-10-25T18:45:36,283 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-10-25T18:45:36,283 status = run_func(*args) 2022-10-25T18:45:36,283 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-10-25T18:45:36,283 return func(self, options, args) 2022-10-25T18:45:36,283 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-10-25T18:45:36,283 raise CommandError("Failed to build one or more wheels") 2022-10-25T18:45:36,283 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-10-25T18:45:36,310 Removed build tracker: '/tmp/pip-build-tracker-1jwou8j3'