2022-10-25T18:54:46,167 Created temporary directory: /tmp/pip-ephem-wheel-cache-0fifkjle 2022-10-25T18:54:46,169 Created temporary directory: /tmp/pip-build-tracker-kmwdhejo 2022-10-25T18:54:46,169 Initialized build tracking at /tmp/pip-build-tracker-kmwdhejo 2022-10-25T18:54:46,169 Created build tracker: /tmp/pip-build-tracker-kmwdhejo 2022-10-25T18:54:46,170 Entered build tracker: /tmp/pip-build-tracker-kmwdhejo 2022-10-25T18:54:46,170 Created temporary directory: /tmp/pip-wheel-ni0t1pku 2022-10-25T18:54:46,206 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-25T18:54:46,209 Created temporary directory: /tmp/pip-ephem-wheel-cache-fv8qz1v_ 2022-10-25T18:54:46,232 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-25T18:54:46,235 2 location(s) to search for versions of pyhmmer: 2022-10-25T18:54:46,235 * https://pypi.org/simple/pyhmmer/ 2022-10-25T18:54:46,235 * https://www.piwheels.org/simple/pyhmmer/ 2022-10-25T18:54:46,235 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-10-25T18:54:46,236 Getting page https://pypi.org/simple/pyhmmer/ 2022-10-25T18:54:46,237 Found index url https://pypi.org/simple 2022-10-25T18:54:46,296 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-10-25T18:54:46,370 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-10-25T18:54:46,374 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-10-25T18:54:46,375 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-10-25T18:54:46,375 Skipping link: No binaries permitted for pyhmmer: 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link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-10-25T18:54:46,377 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-10-25T18:54:46,377 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-10-25T18:54:46,377 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2022-10-25T18:54:46,436 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,436 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,436 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,444 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,444 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,445 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-10-25T18:54:46,445 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,445 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,445 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,446 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,446 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,446 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,447 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,447 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,447 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2022-10-25T18:54:46,448 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,448 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,448 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/25/4a/2db5464d2bb8e41bb346060fd9c3ceae2043c60af6621f04c8e49dbecae9/pyhmmer-0.6.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,463 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/a0/4d7a8f68dc85cd4cf70a39afc592ab67a2e703149887dc78f4d2031a3d1c/pyhmmer-0.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,463 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/b8/a5edf3701cb051f9b8f397cc0ad5312bad4eb6eb761c99ec294b21c922f7/pyhmmer-0.6.2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,464 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,464 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,464 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,464 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,464 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,465 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,465 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2022-10-25T18:54:46,465 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,466 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,466 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/d1/c6278687d5c1b292bdb69419cb3c241a33cd049487e3f6f8c1ea49ae2f63/pyhmmer-0.6.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,466 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9b/fd/18eb2593b4e78f2b4c354ab2c27f44c7005c871cbb88f5979363f447a3f7/pyhmmer-0.6.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,466 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/3d/29a3b664affa3d543bf179c4bc564028436d2d664750d07cb6747610d0bb/pyhmmer-0.6.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,466 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/8a/c9f6d67ff2081be71d5bab224f86dc9fbba04b3a9005d98d1bd4e7abe711/pyhmmer-0.6.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,467 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/40/6efcf88705d32d27951d1d664a8cbb2d43e7b31afcd44c281b24d02f6f0d/pyhmmer-0.6.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,467 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,467 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,467 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,467 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,468 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,468 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,468 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/d4/c43a67e5b31e63a52e7a4204502adf4e43e7c3d5b2f453789d73935dd027/pyhmmer-0.6.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,468 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-25T18:54:46,469 Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3 2022-10-25T18:54:46,469 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-10-25T18:54:46,469 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-10-25T18:54:46,470 Found index url https://www.piwheels.org/simple 2022-10-25T18:54:46,650 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-10-25T18:54:46,651 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-10-25T18:54:46,651 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-10-25T18:54:46,673 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-10-25T18:54:46,690 Collecting pyhmmer==0.6.2 2022-10-25T18:54:46,692 Created temporary directory: /tmp/pip-unpack-j7fwd5q5 2022-10-25T18:54:46,739 Downloading pyhmmer-0.6.2.tar.gz (9.9 MB) 2022-10-25T18:54:50,416 Added pyhmmer==0.6.2 from https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz to build tracker '/tmp/pip-build-tracker-kmwdhejo' 2022-10-25T18:54:50,420 Created temporary directory: /tmp/pip-build-env-aa1plske 2022-10-25T18:54:50,427 Installing build dependencies: started 2022-10-25T18:54:50,428 Running command pip subprocess to install build dependencies 2022-10-25T18:54:51,625 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-10-25T18:54:52,001 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-25T18:54:52,027 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-25T18:54:53,652 Collecting setuptools>=46.4 2022-10-25T18:54:53,775 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB) 2022-10-25T18:54:55,139 Collecting cython~=0.29.16 2022-10-25T18:54:55,858 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-10-25T18:54:57,765 Installing collected packages: setuptools, cython 2022-10-25T18:55:03,062 Creating /tmp/pip-build-env-aa1plske/overlay/bin 2022-10-25T18:55:03,064 changing mode of /tmp/pip-build-env-aa1plske/overlay/bin/cygdb to 755 2022-10-25T18:55:03,067 changing mode of /tmp/pip-build-env-aa1plske/overlay/bin/cython to 755 2022-10-25T18:55:03,069 changing mode of /tmp/pip-build-env-aa1plske/overlay/bin/cythonize to 755 2022-10-25T18:55:03,090 Successfully installed cython-0.29.32 setuptools-65.5.0 2022-10-25T18:55:03,410 Installing build dependencies: finished with status 'done' 2022-10-25T18:55:03,416 Getting requirements to build wheel: started 2022-10-25T18:55:03,417 Running command Getting requirements to build wheel 2022-10-25T18:55:04,560 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-10-25T18:55:04,828 Getting requirements to build wheel: finished with status 'done' 2022-10-25T18:55:04,845 Installing backend dependencies: started 2022-10-25T18:55:04,846 Running command pip subprocess to install backend dependencies 2022-10-25T18:55:06,028 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-10-25T18:55:06,392 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-25T18:55:06,418 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-25T18:55:06,873 Collecting wheel 2022-10-25T18:55:06,891 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-10-25T18:55:08,308 Installing collected packages: wheel 2022-10-25T18:55:08,455 Creating /tmp/pip-build-env-aa1plske/normal/bin 2022-10-25T18:55:08,457 changing mode of /tmp/pip-build-env-aa1plske/normal/bin/wheel to 755 2022-10-25T18:55:08,471 Successfully installed wheel-0.37.1 2022-10-25T18:55:08,695 Installing backend dependencies: finished with status 'done' 2022-10-25T18:55:08,697 Created temporary directory: /tmp/pip-modern-metadata-sjrga4b1 2022-10-25T18:55:08,700 Preparing metadata (pyproject.toml): started 2022-10-25T18:55:08,701 Running command Preparing metadata (pyproject.toml) 2022-10-25T18:55:09,788 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-10-25T18:55:09,939 running dist_info 2022-10-25T18:55:09,953 creating /tmp/pip-modern-metadata-sjrga4b1/pyhmmer.egg-info 2022-10-25T18:55:09,958 writing /tmp/pip-modern-metadata-sjrga4b1/pyhmmer.egg-info/PKG-INFO 2022-10-25T18:55:09,961 writing dependency_links to /tmp/pip-modern-metadata-sjrga4b1/pyhmmer.egg-info/dependency_links.txt 2022-10-25T18:55:09,964 writing requirements to /tmp/pip-modern-metadata-sjrga4b1/pyhmmer.egg-info/requires.txt 2022-10-25T18:55:09,965 writing top-level names to /tmp/pip-modern-metadata-sjrga4b1/pyhmmer.egg-info/top_level.txt 2022-10-25T18:55:09,966 writing manifest file '/tmp/pip-modern-metadata-sjrga4b1/pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:55:10,000 reading manifest file '/tmp/pip-modern-metadata-sjrga4b1/pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:55:10,003 reading manifest template 'MANIFEST.in' 2022-10-25T18:55:10,623 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-10-25T18:55:10,625 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-10-25T18:55:10,626 no previously-included directories found matching 'vendor/easel/demotic' 2022-10-25T18:55:10,627 no previously-included directories found matching 'vendor/easel/documentation' 2022-10-25T18:55:10,628 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-10-25T18:55:10,629 no previously-included directories found matching 'vendor/easel/miniapps' 2022-10-25T18:55:10,630 no previously-included directories found matching 'vendor/easel/testsuite' 2022-10-25T18:55:10,632 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-10-25T18:55:10,633 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-10-25T18:55:10,634 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-10-25T18:55:10,635 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-10-25T18:55:10,637 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-10-25T18:55:10,638 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-10-25T18:55:10,639 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-10-25T18:55:10,639 adding license file 'COPYING' 2022-10-25T18:55:10,667 writing manifest file '/tmp/pip-modern-metadata-sjrga4b1/pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:55:10,668 creating '/tmp/pip-modern-metadata-sjrga4b1/pyhmmer-0.6.2.dist-info' 2022-10-25T18:55:10,739 adding license file "COPYING" (matched pattern "COPYING*") 2022-10-25T18:55:10,905 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-25T18:55:10,913 Source in /tmp/pip-wheel-ni0t1pku/pyhmmer_8fb67faea1fe450abb73e56cca4daa5b has version 0.6.2, which satisfies requirement pyhmmer==0.6.2 from https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz 2022-10-25T18:55:10,914 Removed pyhmmer==0.6.2 from https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz from build tracker '/tmp/pip-build-tracker-kmwdhejo' 2022-10-25T18:55:10,921 Created temporary directory: /tmp/pip-unpack-4v2a25cg 2022-10-25T18:55:10,921 Building wheels for collected packages: pyhmmer 2022-10-25T18:55:10,926 Created temporary directory: /tmp/pip-wheel-irs_m7_c 2022-10-25T18:55:10,927 Destination directory: /tmp/pip-wheel-irs_m7_c 2022-10-25T18:55:10,929 Building wheel for pyhmmer (pyproject.toml): started 2022-10-25T18:55:10,930 Running command Building wheel for pyhmmer (pyproject.toml) 2022-10-25T18:55:11,988 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-10-25T18:55:12,158 running bdist_wheel 2022-10-25T18:55:12,172 running build 2022-10-25T18:55:12,172 running build_py 2022-10-25T18:55:12,181 creating build 2022-10-25T18:55:12,181 creating build/lib.linux-armv7l-cpython-39 2022-10-25T18:55:12,182 creating build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,183 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,186 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,187 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,188 running egg_info 2022-10-25T18:55:12,205 writing pyhmmer.egg-info/PKG-INFO 2022-10-25T18:55:12,208 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-10-25T18:55:12,211 writing requirements to pyhmmer.egg-info/requires.txt 2022-10-25T18:55:12,212 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-10-25T18:55:12,225 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:55:12,242 reading manifest template 'MANIFEST.in' 2022-10-25T18:55:12,827 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-10-25T18:55:12,831 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-10-25T18:55:12,834 no previously-included directories found matching 'vendor/easel/demotic' 2022-10-25T18:55:12,836 no previously-included directories found matching 'vendor/easel/documentation' 2022-10-25T18:55:12,839 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-10-25T18:55:12,842 no previously-included directories found matching 'vendor/easel/miniapps' 2022-10-25T18:55:12,846 no previously-included directories found matching 'vendor/easel/testsuite' 2022-10-25T18:55:12,849 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-10-25T18:55:12,852 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-10-25T18:55:12,855 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-10-25T18:55:12,858 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-10-25T18:55:12,861 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-10-25T18:55:12,864 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-10-25T18:55:12,867 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-10-25T18:55:12,868 adding license file 'COPYING' 2022-10-25T18:55:12,923 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-10-25T18:55:12,933 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,933 !! 2022-10-25T18:55:12,934 ############################ 2022-10-25T18:55:12,934 # Package would be ignored # 2022-10-25T18:55:12,934 ############################ 2022-10-25T18:55:12,934 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-10-25T18:55:12,935 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,935 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-10-25T18:55:12,935 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,935 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,935 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-10-25T18:55:12,935 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,935 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,936 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,936 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,936 documentation page. 2022-10-25T18:55:12,936 !! 2022-10-25T18:55:12,937 check.warn(importable) 2022-10-25T18:55:12,937 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,937 !! 2022-10-25T18:55:12,937 ############################ 2022-10-25T18:55:12,937 # Package would be ignored # 2022-10-25T18:55:12,937 ############################ 2022-10-25T18:55:12,938 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-10-25T18:55:12,938 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,938 'pyhmmer.reexports' has been automatically added to the distribution only 2022-10-25T18:55:12,938 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,938 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,938 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-10-25T18:55:12,938 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,939 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,939 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,939 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,939 documentation page. 2022-10-25T18:55:12,939 !! 2022-10-25T18:55:12,940 check.warn(importable) 2022-10-25T18:55:12,940 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,940 !! 2022-10-25T18:55:12,940 ############################ 2022-10-25T18:55:12,940 # Package would be ignored # 2022-10-25T18:55:12,940 ############################ 2022-10-25T18:55:12,941 Python recognizes 'pyhmmer.tests' as an importable package, 2022-10-25T18:55:12,941 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,941 'pyhmmer.tests' has been automatically added to the distribution only 2022-10-25T18:55:12,941 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,941 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,941 Please make sure that 'pyhmmer.tests' is included as a package by using 2022-10-25T18:55:12,941 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,942 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,942 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,942 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,942 documentation page. 2022-10-25T18:55:12,942 !! 2022-10-25T18:55:12,943 check.warn(importable) 2022-10-25T18:55:12,943 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,943 !! 2022-10-25T18:55:12,943 ############################ 2022-10-25T18:55:12,943 # Package would be ignored # 2022-10-25T18:55:12,943 ############################ 2022-10-25T18:55:12,944 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-10-25T18:55:12,944 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,944 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-10-25T18:55:12,944 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,944 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,944 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-10-25T18:55:12,945 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,945 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,945 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,945 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,945 documentation page. 2022-10-25T18:55:12,945 !! 2022-10-25T18:55:12,946 check.warn(importable) 2022-10-25T18:55:12,946 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,946 !! 2022-10-25T18:55:12,946 ############################ 2022-10-25T18:55:12,946 # Package would be ignored # 2022-10-25T18:55:12,946 ############################ 2022-10-25T18:55:12,947 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-10-25T18:55:12,947 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,947 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-10-25T18:55:12,947 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,947 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,947 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-10-25T18:55:12,947 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,948 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,948 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,948 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,948 documentation page. 2022-10-25T18:55:12,948 !! 2022-10-25T18:55:12,948 check.warn(importable) 2022-10-25T18:55:12,949 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,949 !! 2022-10-25T18:55:12,949 ############################ 2022-10-25T18:55:12,949 # Package would be ignored # 2022-10-25T18:55:12,949 ############################ 2022-10-25T18:55:12,949 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-10-25T18:55:12,949 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,950 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-10-25T18:55:12,950 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,950 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,950 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-10-25T18:55:12,950 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,950 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,950 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,951 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,951 documentation page. 2022-10-25T18:55:12,951 !! 2022-10-25T18:55:12,951 check.warn(importable) 2022-10-25T18:55:12,952 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,952 !! 2022-10-25T18:55:12,952 ############################ 2022-10-25T18:55:12,952 # Package would be ignored # 2022-10-25T18:55:12,952 ############################ 2022-10-25T18:55:12,952 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-10-25T18:55:12,952 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,953 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-10-25T18:55:12,953 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,953 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,953 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-10-25T18:55:12,953 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,953 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,953 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,954 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,954 documentation page. 2022-10-25T18:55:12,954 !! 2022-10-25T18:55:12,954 check.warn(importable) 2022-10-25T18:55:12,954 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,955 !! 2022-10-25T18:55:12,955 ############################ 2022-10-25T18:55:12,955 # Package would be ignored # 2022-10-25T18:55:12,955 ############################ 2022-10-25T18:55:12,955 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-10-25T18:55:12,955 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,956 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-10-25T18:55:12,956 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,956 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,956 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-10-25T18:55:12,956 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,956 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,956 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,957 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,957 documentation page. 2022-10-25T18:55:12,957 !! 2022-10-25T18:55:12,957 check.warn(importable) 2022-10-25T18:55:12,957 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,957 !! 2022-10-25T18:55:12,958 ############################ 2022-10-25T18:55:12,958 # Package would be ignored # 2022-10-25T18:55:12,958 ############################ 2022-10-25T18:55:12,958 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-10-25T18:55:12,958 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,958 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-10-25T18:55:12,958 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,959 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,959 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-10-25T18:55:12,959 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,959 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,959 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,959 documentation page. 2022-10-25T18:55:12,960 !! 2022-10-25T18:55:12,960 check.warn(importable) 2022-10-25T18:55:12,960 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,960 !! 2022-10-25T18:55:12,961 ############################ 2022-10-25T18:55:12,961 # Package would be ignored # 2022-10-25T18:55:12,961 ############################ 2022-10-25T18:55:12,961 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-10-25T18:55:12,961 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,961 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-10-25T18:55:12,961 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,961 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,962 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-10-25T18:55:12,962 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,962 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,962 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,962 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,962 documentation page. 2022-10-25T18:55:12,963 !! 2022-10-25T18:55:12,963 check.warn(importable) 2022-10-25T18:55:12,963 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,963 !! 2022-10-25T18:55:12,963 ############################ 2022-10-25T18:55:12,964 # Package would be ignored # 2022-10-25T18:55:12,964 ############################ 2022-10-25T18:55:12,964 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-10-25T18:55:12,964 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,964 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-10-25T18:55:12,964 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,965 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,965 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-10-25T18:55:12,965 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,965 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,965 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,965 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,965 documentation page. 2022-10-25T18:55:12,966 !! 2022-10-25T18:55:12,966 check.warn(importable) 2022-10-25T18:55:12,966 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,966 !! 2022-10-25T18:55:12,966 ############################ 2022-10-25T18:55:12,967 # Package would be ignored # 2022-10-25T18:55:12,967 ############################ 2022-10-25T18:55:12,967 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-10-25T18:55:12,967 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,967 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-10-25T18:55:12,967 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,967 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,968 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-10-25T18:55:12,968 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,968 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,968 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,968 documentation page. 2022-10-25T18:55:12,969 !! 2022-10-25T18:55:12,969 check.warn(importable) 2022-10-25T18:55:12,969 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,969 !! 2022-10-25T18:55:12,969 ############################ 2022-10-25T18:55:12,969 # Package would be ignored # 2022-10-25T18:55:12,970 ############################ 2022-10-25T18:55:12,970 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-10-25T18:55:12,970 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,970 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-10-25T18:55:12,970 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,970 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,970 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-10-25T18:55:12,971 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,971 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,971 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,971 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,971 documentation page. 2022-10-25T18:55:12,971 !! 2022-10-25T18:55:12,972 check.warn(importable) 2022-10-25T18:55:12,972 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.test_easel' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,972 !! 2022-10-25T18:55:12,972 ############################ 2022-10-25T18:55:12,973 # Package would be ignored # 2022-10-25T18:55:12,973 ############################ 2022-10-25T18:55:12,973 Python recognizes 'pyhmmer.tests.test_easel' as an importable package, 2022-10-25T18:55:12,973 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,973 'pyhmmer.tests.test_easel' has been automatically added to the distribution only 2022-10-25T18:55:12,973 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,973 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,974 Please make sure that 'pyhmmer.tests.test_easel' is included as a package by using 2022-10-25T18:55:12,974 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,974 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,974 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,974 documentation page. 2022-10-25T18:55:12,975 !! 2022-10-25T18:55:12,975 check.warn(importable) 2022-10-25T18:55:12,975 /tmp/pip-build-env-aa1plske/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.test_plan7' as data is deprecated, please list it in `packages`. 2022-10-25T18:55:12,975 !! 2022-10-25T18:55:12,976 ############################ 2022-10-25T18:55:12,976 # Package would be ignored # 2022-10-25T18:55:12,976 ############################ 2022-10-25T18:55:12,976 Python recognizes 'pyhmmer.tests.test_plan7' as an importable package, 2022-10-25T18:55:12,976 but it is not listed in the `packages` configuration of setuptools. 2022-10-25T18:55:12,976 'pyhmmer.tests.test_plan7' has been automatically added to the distribution only 2022-10-25T18:55:12,977 because it may contain data files, but this behavior is likely to change 2022-10-25T18:55:12,977 in future versions of setuptools (and therefore is considered deprecated). 2022-10-25T18:55:12,977 Please make sure that 'pyhmmer.tests.test_plan7' is included as a package by using 2022-10-25T18:55:12,977 the `packages` configuration field or the proper discovery methods 2022-10-25T18:55:12,977 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-25T18:55:12,977 instead of `find_packages(...)`/`find:`). 2022-10-25T18:55:12,978 You can read more about "package discovery" and "data files" on setuptools 2022-10-25T18:55:12,978 documentation page. 2022-10-25T18:55:12,978 !! 2022-10-25T18:55:12,978 check.warn(importable) 2022-10-25T18:55:12,978 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,979 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,979 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,981 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,983 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,986 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,993 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,995 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,997 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:12,999 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:13,002 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:13,005 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:13,013 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-25T18:55:13,015 creating build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-10-25T18:55:13,016 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-10-25T18:55:13,018 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-10-25T18:55:13,021 creating build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-25T18:55:13,021 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-25T18:55:13,023 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-25T18:55:13,025 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-25T18:55:13,027 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-25T18:55:13,029 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-25T18:55:13,031 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-25T18:55:13,033 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-25T18:55:13,035 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-25T18:55:13,036 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-25T18:55:13,038 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-25T18:55:13,040 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-25T18:55:13,042 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-25T18:55:13,045 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-25T18:55:13,048 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-25T18:55:13,049 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2022-10-25T18:55:13,050 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2022-10-25T18:55:13,052 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2022-10-25T18:55:13,053 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2022-10-25T18:55:13,055 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-25T18:55:13,056 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-25T18:55:13,059 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-25T18:55:13,063 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-25T18:55:13,067 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-25T18:55:13,120 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,120 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,124 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,126 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,129 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,133 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,136 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,138 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,142 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,146 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,148 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,150 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,154 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,158 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,183 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,186 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,241 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-25T18:55:13,302 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-25T18:55:13,302 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-25T18:55:13,310 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-25T18:55:13,315 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-25T18:55:13,321 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-25T18:55:13,326 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-25T18:55:13,334 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-25T18:55:13,343 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-25T18:55:13,473 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:55:13,473 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:55:13,478 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:55:13,482 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:55:13,487 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-25T18:55:13,596 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-10-25T18:55:13,597 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-10-25T18:55:13,599 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-10-25T18:55:13,601 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-10-25T18:55:13,603 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-25T18:55:13,604 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-25T18:55:13,607 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-25T18:55:13,609 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-25T18:55:13,612 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-25T18:55:13,614 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-25T18:55:13,615 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-25T18:55:13,650 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-25T18:55:13,657 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-25T18:55:13,737 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-25T18:55:13,741 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-25T18:55:13,744 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-25T18:55:13,747 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-25T18:55:13,749 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-25T18:55:13,750 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-25T18:55:13,753 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-25T18:55:13,755 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-25T18:55:13,758 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-25T18:55:13,760 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-25T18:55:13,762 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-25T18:55:13,764 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-25T18:55:13,767 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-25T18:55:13,770 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,771 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,773 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,775 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,777 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,779 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,782 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,784 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,787 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,789 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,791 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,794 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,796 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-25T18:55:13,798 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,799 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,801 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,803 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,806 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,807 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,810 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,812 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,814 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,817 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,819 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,821 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,823 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-25T18:55:13,826 running build_clib 2022-10-25T18:55:13,833 creating build/temp.linux-armv7l-cpython-39 2022-10-25T18:55:13,834 generating "divsufsort.h" for divsufsort library 2022-10-25T18:55:13,834 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-39/divsufsort.h 2022-10-25T18:55:13,836 generating "esl_config.h" for easel library 2022-10-25T18:55:13,933 checking whether can be included... yes 2022-10-25T18:55:14,040 checking whether can be included... yes 2022-10-25T18:55:14,124 checking whether can be included... yes 2022-10-25T18:55:14,209 checking whether can be included... yes 2022-10-25T18:55:14,290 checking whether can be included... yes 2022-10-25T18:55:14,379 checking whether can be included... yes 2022-10-25T18:55:14,497 checking whether can be included... yes 2022-10-25T18:55:14,633 checking whether can be included... yes 2022-10-25T18:55:14,729 checking whether can be included... yes 2022-10-25T18:55:14,812 checking whether can be included... yes 2022-10-25T18:55:14,924 checking whether can be included... yes 2022-10-25T18:55:15,043 checking whether can be included... yes 2022-10-25T18:55:15,163 checking whether can be included... yes 2022-10-25T18:55:15,217 checking whether function 'aligned_alloc' is available... no 2022-10-25T18:55:15,270 checking whether function 'erfc' is available... no 2022-10-25T18:55:15,498 checking whether function 'getpid' is available... yes 2022-10-25T18:55:15,695 checking whether function '_mm_malloc' is available... no 2022-10-25T18:55:15,887 checking whether function 'popen' is available... yes 2022-10-25T18:55:16,080 checking whether function 'posix_memalign' is available... yes 2022-10-25T18:55:16,308 checking whether function 'strcasecmp' is available... yes 2022-10-25T18:55:16,503 checking whether function 'strsep' is available... yes 2022-10-25T18:55:16,698 checking whether function 'sysconf' is available... yes 2022-10-25T18:55:16,892 checking whether function 'sysctl' is available... yes 2022-10-25T18:55:17,084 checking whether function 'times' is available... yes 2022-10-25T18:55:17,280 checking whether function 'fseeko' is available... yes 2022-10-25T18:55:17,283 generating "p7_config.h" for hmmer library 2022-10-25T18:55:17,367 checking whether can be included... yes 2022-10-25T18:55:17,452 checking whether can be included... yes 2022-10-25T18:55:17,536 checking whether can be included... yes 2022-10-25T18:55:17,626 checking whether can be included... yes 2022-10-25T18:55:17,735 checking whether can be included... yes 2022-10-25T18:55:17,888 checking whether can be included... yes 2022-10-25T18:55:18,001 checking whether can be included... yes 2022-10-25T18:55:18,088 checking whether can be included... yes 2022-10-25T18:55:18,282 checking whether function 'mkstemp' is available... yes 2022-10-25T18:55:18,474 checking whether function 'popen' is available... yes 2022-10-25T18:55:18,694 checking whether function 'putenv' is available... yes 2022-10-25T18:55:18,887 checking whether function 'strcasecmp' is available... yes 2022-10-25T18:55:19,080 checking whether function 'strsep' is available... yes 2022-10-25T18:55:19,278 checking whether function 'times' is available... yes 2022-10-25T18:55:19,498 checking whether function 'getpid' is available... yes 2022-10-25T18:55:19,696 checking whether function 'sysctl' is available... yes 2022-10-25T18:55:19,892 checking whether function 'sysconf' is available... yes 2022-10-25T18:55:20,088 checking whether function 'getcwd' is available... yes 2022-10-25T18:55:20,310 checking whether function 'chmod' is available... yes 2022-10-25T18:55:20,512 checking whether function 'stat' is available... yes 2022-10-25T18:55:20,707 checking whether function 'fstat' is available... yes 2022-10-25T18:55:20,760 checking whether function 'erfc' is available... no 2022-10-25T18:55:20,763 generating build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-10-25T18:55:20,772 generating build/temp.linux-armv7l-cpython-39/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-10-25T18:55:20,781 generating build/temp.linux-armv7l-cpython-39/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-10-25T18:55:20,859 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-10-25T18:55:20,859 creating build/temp.linux-armv7l-cpython-39/vendor 2022-10-25T18:55:20,859 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer 2022-10-25T18:55:20,860 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort 2022-10-25T18:55:20,861 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2022-10-25T18:55:24,713 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libdivsufsort.a build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2022-10-25T18:55:24,747 generating build/temp.linux-armv7l-cpython-39/libeasel.a from vendor/easel/esl_sse.c, vendor/easel/easel.c, vendor/easel/esl_wuss.c, vendor/easel/esl_heap.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_buffer.c, vendor/easel/esl_alloc.c, vendor/easel/esl_stack.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_red_black.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_huffman.c, vendor/easel/esl_gev.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_avx512.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_msa.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_vmx.c, vendor/easel/esl_paml.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_sqio.c, vendor/easel/interface_lapack.c, vendor/easel/esl_distance.c, vendor/easel/esl_exponential.c, vendor/easel/esl_varint.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_mpi.c, vendor/easel/esl_neon.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_regexp.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_arr3.c, vendor/easel/esl_arr2.c, vendor/easel/esl_avx.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_cpu.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_sq.c, vendor/easel/esl_getopts.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/interface_gsl.c, vendor/easel/esl_msafile.c, vendor/easel/esl_hmm.c, vendor/easel/esl_stats.c, vendor/easel/esl_random.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_rand64.c, vendor/easel/esl_cluster.c, vendor/easel/esl_gencode.c, vendor/easel/esl_gamma.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_graph.c, vendor/easel/esl_ssi.c, vendor/easel/esl_normal.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_threads.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_composition.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_swat.c, vendor/easel/esl_tree.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_json.c, vendor/easel/esl_recorder.c, vendor/easel/esl_weibull.c, vendor/easel/esl_mem.c, vendor/easel/esl_histogram.c, build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2022-10-25T18:55:24,785 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-10-25T18:55:24,785 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-10-25T18:55:24,785 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-10-25T18:55:24,786 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-10-25T18:55:24,786 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-10-25T18:55:24,786 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-10-25T18:55:24,787 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-10-25T18:55:24,787 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-10-25T18:55:24,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o 2022-10-25T18:55:24,788 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o 2022-10-25T18:55:24,794 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o 2022-10-25T18:55:24,795 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o 2022-10-25T18:55:24,900 generating build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o from vendor/easel/easel.c 2022-10-25T18:55:24,901 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o 2022-10-25T18:55:25,108 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-10-25T18:55:25,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o 2022-10-25T18:55:25,145 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-10-25T18:55:25,146 vendor/easel/easel.c:1807:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:55:25,146 1807 | nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-10-25T18:55:25,147 | ^~~~~~~~~~~~~~~~ 2022-10-25T18:55:25,913 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-10-25T18:55:25,914 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o 2022-10-25T18:55:26,417 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-10-25T18:55:26,418 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o 2022-10-25T18:55:26,490 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-10-25T18:55:26,491 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o 2022-10-25T18:55:26,593 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-10-25T18:55:26,594 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o 2022-10-25T18:55:26,692 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-10-25T18:55:26,693 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o 2022-10-25T18:55:26,729 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-10-25T18:55:26,729 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o 2022-10-25T18:55:26,777 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-10-25T18:55:26,778 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:55:26,778 136 | return status; 2022-10-25T18:55:26,778 | ^~~~~~ 2022-10-25T18:55:26,833 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-10-25T18:55:26,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o 2022-10-25T18:55:26,878 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-10-25T18:55:26,879 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o 2022-10-25T18:55:27,279 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-10-25T18:55:27,279 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o 2022-10-25T18:55:27,454 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-10-25T18:55:27,455 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o 2022-10-25T18:55:27,557 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-10-25T18:55:27,558 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o 2022-10-25T18:55:27,617 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-10-25T18:55:27,618 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o 2022-10-25T18:55:28,012 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-10-25T18:55:28,012 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o 2022-10-25T18:55:28,080 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-10-25T18:55:28,081 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o 2022-10-25T18:55:28,231 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-10-25T18:55:28,232 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o 2022-10-25T18:55:28,345 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-10-25T18:55:28,346 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o 2022-10-25T18:55:28,670 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-10-25T18:55:28,671 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o 2022-10-25T18:55:28,844 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-10-25T18:55:28,845 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o 2022-10-25T18:55:28,944 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-10-25T18:55:28,945 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o 2022-10-25T18:55:29,339 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-10-25T18:55:29,340 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o 2022-10-25T18:55:29,567 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-10-25T18:55:29,568 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:29,568 253 | if (alphatype != dd->abc_r->type) 2022-10-25T18:55:29,568 | ^~ 2022-10-25T18:55:29,579 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-10-25T18:55:29,579 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:29,579 614 | if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-10-25T18:55:29,579 | ^ 2022-10-25T18:55:29,580 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:29,580 615 | n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-10-25T18:55:29,580 | ^ 2022-10-25T18:55:29,580 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:29,581 616 | n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-10-25T18:55:29,581 | ^ 2022-10-25T18:55:29,581 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:29,581 617 | n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-10-25T18:55:29,582 | ^ 2022-10-25T18:55:29,584 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:29,584 676 | if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-10-25T18:55:29,585 | ^~ 2022-10-25T18:55:29,585 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:29,585 682 | if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-10-25T18:55:29,586 | ^~ 2022-10-25T18:55:29,586 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:29,586 687 | if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-10-25T18:55:29,587 | ^~ 2022-10-25T18:55:29,587 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:29,587 692 | if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-10-25T18:55:29,587 | ^~ 2022-10-25T18:55:29,621 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-10-25T18:55:29,622 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-10-25T18:55:29,622 1129 | } 2022-10-25T18:55:29,622 | ^ 2022-10-25T18:55:29,629 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-10-25T18:55:29,629 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-10-25T18:55:29,630 1052 | } 2022-10-25T18:55:29,630 | ^ 2022-10-25T18:55:29,707 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-10-25T18:55:29,707 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o 2022-10-25T18:55:30,477 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-10-25T18:55:30,478 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o 2022-10-25T18:55:30,984 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-10-25T18:55:30,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o 2022-10-25T18:55:31,343 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-10-25T18:55:31,344 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o 2022-10-25T18:55:31,503 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-10-25T18:55:31,503 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o 2022-10-25T18:55:31,614 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-10-25T18:55:31,615 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o 2022-10-25T18:55:31,983 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-10-25T18:55:31,983 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:55:31,984 474 | if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-10-25T18:55:31,984 | ~~~~^~~~~~~ 2022-10-25T18:55:32,072 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-10-25T18:55:32,073 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o 2022-10-25T18:55:32,352 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-10-25T18:55:32,353 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o 2022-10-25T18:55:32,502 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-10-25T18:55:32,503 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o 2022-10-25T18:55:32,574 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-10-25T18:55:32,574 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o 2022-10-25T18:55:32,688 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-10-25T18:55:32,689 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o 2022-10-25T18:55:32,706 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-10-25T18:55:32,707 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o 2022-10-25T18:55:32,714 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-10-25T18:55:32,715 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,715 216 | if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-10-25T18:55:32,715 | ^~ 2022-10-25T18:55:32,716 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,716 226 | if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-10-25T18:55:32,716 | ^~ 2022-10-25T18:55:32,717 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,717 233 | if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-10-25T18:55:32,718 | ^~ 2022-10-25T18:55:32,732 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-10-25T18:55:32,732 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,732 758 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:55:32,732 | ^~ 2022-10-25T18:55:32,733 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-10-25T18:55:32,734 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,734 809 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:55:32,734 | ^~ 2022-10-25T18:55:32,735 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-10-25T18:55:32,736 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,736 860 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:55:32,736 | ^~ 2022-10-25T18:55:32,739 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-10-25T18:55:32,739 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,740 1036 | if (status != eslOK || nres != W) { 2022-10-25T18:55:32,740 | ^~ 2022-10-25T18:55:32,741 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,741 1059 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:55:32,742 | ^~ 2022-10-25T18:55:32,762 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-10-25T18:55:32,763 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,763 1421 | if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-10-25T18:55:32,763 | ^ 2022-10-25T18:55:32,777 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,778 1458 | if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-10-25T18:55:32,778 | ^~ 2022-10-25T18:55:32,779 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-10-25T18:55:32,780 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,780 1513 | if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-10-25T18:55:32,780 | ^ 2022-10-25T18:55:32,781 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,781 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-10-25T18:55:32,781 | ^~ 2022-10-25T18:55:32,782 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,782 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-10-25T18:55:32,782 | ^ 2022-10-25T18:55:32,783 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-10-25T18:55:32,783 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o 2022-10-25T18:55:32,785 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,786 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-10-25T18:55:32,786 | ^ 2022-10-25T18:55:32,786 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,786 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2022-10-25T18:55:32,787 | ^ 2022-10-25T18:55:32,787 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,787 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2022-10-25T18:55:32,788 | ^ 2022-10-25T18:55:32,788 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,788 1526 | for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-10-25T18:55:32,788 | ^ 2022-10-25T18:55:32,789 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,789 1527 | if (inx < volume->end_seq) break; 2022-10-25T18:55:32,789 | ^ 2022-10-25T18:55:32,790 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,790 1532 | if (cnt >= ncbi->volumes) return eslFAIL; 2022-10-25T18:55:32,791 | ^~ 2022-10-25T18:55:32,791 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,792 1539 | if (ncbi->index_start == -1 || inx > end) { 2022-10-25T18:55:32,792 | ^~ 2022-10-25T18:55:32,792 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,793 1539 | if (ncbi->index_start == -1 || inx > end) { 2022-10-25T18:55:32,793 | ^ 2022-10-25T18:55:32,794 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,794 1564 | if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-10-25T18:55:32,795 | ^~ 2022-10-25T18:55:32,795 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,796 1572 | if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-10-25T18:55:32,796 | ^~ 2022-10-25T18:55:32,796 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,797 1581 | if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-10-25T18:55:32,797 | ^~ 2022-10-25T18:55:32,798 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-10-25T18:55:32,799 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,799 1623 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:55:32,799 | ^~ 2022-10-25T18:55:32,801 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,801 1633 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-25T18:55:32,801 | ^~ 2022-10-25T18:55:32,802 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,802 1641 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-25T18:55:32,802 | ^~ 2022-10-25T18:55:32,803 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-10-25T18:55:32,804 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,804 1690 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:55:32,804 | ^~ 2022-10-25T18:55:32,809 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,809 1701 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-25T18:55:32,809 | ^~ 2022-10-25T18:55:32,812 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,812 1754 | if (ncbi->seq_apos - sq->doff < size) { 2022-10-25T18:55:32,812 | ^ 2022-10-25T18:55:32,813 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-10-25T18:55:32,814 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,815 1831 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:55:32,815 | ^~ 2022-10-25T18:55:32,818 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,818 1856 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-25T18:55:32,818 | ^~ 2022-10-25T18:55:32,824 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-10-25T18:55:32,825 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,826 2005 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-25T18:55:32,826 | ^~ 2022-10-25T18:55:32,830 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,831 2047 | if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-10-25T18:55:32,831 | ^~ 2022-10-25T18:55:32,838 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-10-25T18:55:32,839 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,839 2178 | for (x = 0; x < strlen(ncbisym); ++x) { 2022-10-25T18:55:32,840 | ^ 2022-10-25T18:55:32,840 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,841 2179 | for (y = 0; y < strlen(abc->sym); ++y) { 2022-10-25T18:55:32,841 | ^ 2022-10-25T18:55:32,842 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,842 2187 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-10-25T18:55:32,842 | ^~ 2022-10-25T18:55:32,844 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-10-25T18:55:32,845 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,845 2226 | for (x = 0; x < strlen(ncbisym); ++x) { 2022-10-25T18:55:32,846 | ^ 2022-10-25T18:55:32,846 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,847 2227 | for (y = 0; y < strlen(abc->sym); ++y) { 2022-10-25T18:55:32,847 | ^ 2022-10-25T18:55:32,848 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:32,848 2235 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-10-25T18:55:32,848 | ^~ 2022-10-25T18:55:32,852 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-10-25T18:55:32,853 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:32,854 2463 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-10-25T18:55:32,854 | ^~ 2022-10-25T18:55:33,106 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-10-25T18:55:33,107 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o 2022-10-25T18:55:33,374 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-10-25T18:55:33,375 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o 2022-10-25T18:55:33,503 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-10-25T18:55:33,504 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o 2022-10-25T18:55:33,777 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-10-25T18:55:33,777 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o 2022-10-25T18:55:33,792 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-10-25T18:55:33,793 15 | static double stopwatch_getRealTime(void); 2022-10-25T18:55:33,793 | ^~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:33,971 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-10-25T18:55:33,972 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o 2022-10-25T18:55:34,192 In file included from vendor/easel/esl_msafile2.c:26: 2022-10-25T18:55:34,192 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-10-25T18:55:34,193 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:34,193 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:55:34,193 | ^ 2022-10-25T18:55:34,194 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:55:34,194 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-10-25T18:55:34,195 | ^~~~~~~ 2022-10-25T18:55:34,195 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:55:34,195 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:55:34,196 | ^~~ 2022-10-25T18:55:34,196 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:55:34,196 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-10-25T18:55:34,196 | ^~~~~~~ 2022-10-25T18:55:34,197 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:34,197 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:55:34,197 | ^ 2022-10-25T18:55:34,198 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:55:34,198 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-10-25T18:55:34,198 | ^~~~~~~ 2022-10-25T18:55:34,198 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:55:34,198 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:55:34,199 | ^~~ 2022-10-25T18:55:34,199 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:55:34,199 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-10-25T18:55:34,199 | ^~~~~~~ 2022-10-25T18:55:34,447 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-10-25T18:55:34,448 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o 2022-10-25T18:55:35,238 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-10-25T18:55:35,239 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o 2022-10-25T18:55:35,395 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-10-25T18:55:35,395 vendor/easel/esl_regexp.c:804:18: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:55:35,396 804 | *flagp |= flags&HASWIDTH; 2022-10-25T18:55:35,396 | ^ 2022-10-25T18:55:36,647 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-10-25T18:55:36,648 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o 2022-10-25T18:55:36,825 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-10-25T18:55:36,826 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:36,827 107 | if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-10-25T18:55:36,827 | ^~ 2022-10-25T18:55:37,096 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-10-25T18:55:37,097 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o 2022-10-25T18:55:37,126 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-10-25T18:55:37,127 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o 2022-10-25T18:55:37,352 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-10-25T18:55:37,353 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o 2022-10-25T18:55:37,489 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-10-25T18:55:37,490 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o 2022-10-25T18:55:37,973 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-10-25T18:55:37,974 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o 2022-10-25T18:55:38,208 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-10-25T18:55:38,208 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-10-25T18:55:38,209 1636 | for (pos = 0; pos < sq->n; pos++) 2022-10-25T18:55:38,209 | ^ 2022-10-25T18:55:38,209 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-10-25T18:55:38,210 1645 | for (pos = 1; pos <= sq->n; pos++) 2022-10-25T18:55:38,210 | ^~ 2022-10-25T18:55:38,491 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-10-25T18:55:38,492 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o 2022-10-25T18:55:38,821 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-10-25T18:55:38,822 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o 2022-10-25T18:55:38,923 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-10-25T18:55:38,924 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o 2022-10-25T18:55:39,334 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-10-25T18:55:39,334 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:55:39,334 722 | for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-10-25T18:55:39,335 | ^ 2022-10-25T18:55:39,335 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-10-25T18:55:39,336 645 | char *p; 2022-10-25T18:55:39,336 | ^ 2022-10-25T18:55:39,551 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-10-25T18:55:39,551 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o 2022-10-25T18:55:40,110 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-10-25T18:55:40,110 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o 2022-10-25T18:55:40,119 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-10-25T18:55:40,120 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o 2022-10-25T18:55:40,301 In file included from vendor/easel/esl_hmm.c:9: 2022-10-25T18:55:40,302 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-10-25T18:55:40,302 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:40,302 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-25T18:55:40,302 | ^ 2022-10-25T18:55:40,303 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-10-25T18:55:40,303 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-10-25T18:55:40,303 | ^~~~~~~ 2022-10-25T18:55:40,304 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:55:40,304 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-25T18:55:40,304 | ^~~ 2022-10-25T18:55:40,305 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-10-25T18:55:40,305 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-10-25T18:55:40,305 | ^~~~~~~ 2022-10-25T18:55:40,563 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-10-25T18:55:40,564 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-10-25T18:55:40,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o 2022-10-25T18:55:40,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o 2022-10-25T18:55:40,749 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-10-25T18:55:40,749 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,750 261 | if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-10-25T18:55:40,750 | ^~ 2022-10-25T18:55:40,759 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-10-25T18:55:40,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o 2022-10-25T18:55:40,768 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-10-25T18:55:40,769 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,769 728 | if ((n+1) > ns->flen) ns->flen = n+1; 2022-10-25T18:55:40,770 | ^ 2022-10-25T18:55:40,773 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-10-25T18:55:40,773 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,774 862 | if (n > ns->plen) ns->plen = n; 2022-10-25T18:55:40,774 | ^ 2022-10-25T18:55:40,776 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,776 893 | for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-10-25T18:55:40,777 | ^ 2022-10-25T18:55:40,777 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-10-25T18:55:40,778 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,778 941 | if (n > ns->slen) ns->slen = n; 2022-10-25T18:55:40,778 | ^ 2022-10-25T18:55:40,780 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,780 957 | for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-10-25T18:55:40,781 | ^ 2022-10-25T18:55:40,788 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-10-25T18:55:40,789 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,789 1149 | for (i = 0; i < ns->nprimary; i++) 2022-10-25T18:55:40,789 | ^ 2022-10-25T18:55:40,791 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,791 1167 | for (i = 0; i < ns->nprimary; i++) 2022-10-25T18:55:40,792 | ^ 2022-10-25T18:55:40,793 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,793 1187 | for (i = 0; i < ns->nsecondary; i++) 2022-10-25T18:55:40,793 | ^ 2022-10-25T18:55:40,795 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,795 1204 | for (i = 0; i < ns->nsecondary; i++) 2022-10-25T18:55:40,795 | ^ 2022-10-25T18:55:40,799 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-10-25T18:55:40,799 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,800 1253 | for (i = 0; i < ns->nprimary; i++) 2022-10-25T18:55:40,800 | ^ 2022-10-25T18:55:40,801 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,801 1259 | for (i = 0; i < ns->nsecondary; i++) 2022-10-25T18:55:40,802 | ^ 2022-10-25T18:55:40,806 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-10-25T18:55:40,807 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,807 1351 | for (i = 0; i < ns->nprimary; i++) { 2022-10-25T18:55:40,808 | ^ 2022-10-25T18:55:40,809 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,809 1370 | for (i = 0; i < ns->nsecondary; i++) 2022-10-25T18:55:40,809 | ^ 2022-10-25T18:55:40,810 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,810 1376 | for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-10-25T18:55:40,811 | ^ 2022-10-25T18:55:40,811 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,812 1377 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-10-25T18:55:40,812 | ^ 2022-10-25T18:55:40,813 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,813 1378 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-10-25T18:55:40,813 | ^ 2022-10-25T18:55:40,972 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-10-25T18:55:40,972 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:40,973 1308 | if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-10-25T18:55:40,973 | ^~ 2022-10-25T18:55:41,261 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-10-25T18:55:41,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o 2022-10-25T18:55:41,269 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-10-25T18:55:41,270 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o 2022-10-25T18:55:41,422 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-10-25T18:55:41,423 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:41,423 151 | for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-10-25T18:55:41,423 | ^ 2022-10-25T18:55:41,556 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-10-25T18:55:41,557 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o 2022-10-25T18:55:42,104 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-10-25T18:55:42,105 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o 2022-10-25T18:55:42,316 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-10-25T18:55:42,317 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-10-25T18:55:42,317 652 | for (i = 0; i < a; i++) 2022-10-25T18:55:42,317 | ^ 2022-10-25T18:55:42,637 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-10-25T18:55:42,638 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o 2022-10-25T18:55:42,695 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-10-25T18:55:42,696 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o 2022-10-25T18:55:42,816 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-10-25T18:55:42,816 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-10-25T18:55:42,817 94 | for (h = 0; h < kh->hashsize; h++) 2022-10-25T18:55:42,817 | ^ 2022-10-25T18:55:42,819 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-10-25T18:55:42,819 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:42,820 171 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-10-25T18:55:42,820 | ^ 2022-10-25T18:55:42,821 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-10-25T18:55:42,822 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-10-25T18:55:42,822 215 | for (h = 0; h < kh->hashsize; h++) 2022-10-25T18:55:42,822 | ^ 2022-10-25T18:55:42,825 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-10-25T18:55:42,826 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:42,827 310 | if (kh->nkeys > 3*kh->hashsize) 2022-10-25T18:55:42,827 | ^ 2022-10-25T18:55:42,830 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-10-25T18:55:42,831 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:42,831 401 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-10-25T18:55:42,831 | ^ 2022-10-25T18:55:42,834 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-10-25T18:55:42,835 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:42,835 491 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-10-25T18:55:42,835 | ^ 2022-10-25T18:55:42,904 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-10-25T18:55:42,905 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o 2022-10-25T18:55:42,958 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-10-25T18:55:42,959 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o 2022-10-25T18:55:43,054 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-10-25T18:55:43,055 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o 2022-10-25T18:55:43,161 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-10-25T18:55:43,162 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o 2022-10-25T18:55:43,373 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-10-25T18:55:43,373 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:55:43,374 243 | if (opt_fx) *opt_fx = fx; 2022-10-25T18:55:43,374 | ~~~~~~~~^~~~ 2022-10-25T18:55:43,375 vendor/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:55:43,376 720 | m = 0.5 * (a+b); 2022-10-25T18:55:43,376 | ~~^~~ 2022-10-25T18:55:43,377 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-10-25T18:55:43,377 118 | double ax,bx,cx; 2022-10-25T18:55:43,377 | ^~ 2022-10-25T18:55:43,379 vendor/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-25T18:55:43,379 720 | m = 0.5 * (a+b); 2022-10-25T18:55:43,380 | ~~^~~ 2022-10-25T18:55:43,380 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-10-25T18:55:43,380 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-10-25T18:55:43,380 118 | double ax,bx,cx; 2022-10-25T18:55:43,381 | ^~ 2022-10-25T18:55:43,381 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o 2022-10-25T18:55:43,549 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-10-25T18:55:43,550 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o 2022-10-25T18:55:43,606 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-10-25T18:55:43,607 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o 2022-10-25T18:55:43,827 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-10-25T18:55:43,828 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o 2022-10-25T18:55:43,974 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-10-25T18:55:43,975 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o 2022-10-25T18:55:43,983 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-10-25T18:55:43,984 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o 2022-10-25T18:55:44,046 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-10-25T18:55:44,046 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:44,047 449 | if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-10-25T18:55:44,047 | ^~ 2022-10-25T18:55:44,776 generating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2022-10-25T18:55:44,776 creating build/temp.linux-armv7l-cpython-39/build 2022-10-25T18:55:44,777 creating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39 2022-10-25T18:55:44,778 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2022-10-25T18:55:44,850 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-10-25T18:55:44,851 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o 2022-10-25T18:55:44,993 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-10-25T18:55:44,995 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o 2022-10-25T18:55:45,053 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-10-25T18:55:45,054 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:45,055 1669 | if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-10-25T18:55:45,055 | ^~ 2022-10-25T18:55:45,292 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-10-25T18:55:45,293 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o 2022-10-25T18:55:47,002 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-10-25T18:55:47,002 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o 2022-10-25T18:55:47,584 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-10-25T18:55:47,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o 2022-10-25T18:55:48,142 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-10-25T18:55:48,143 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o 2022-10-25T18:55:49,156 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-10-25T18:55:49,157 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o 2022-10-25T18:55:49,299 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-10-25T18:55:49,299 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:49,299 541 | if (rank > h->n) 2022-10-25T18:55:49,300 | ^ 2022-10-25T18:55:50,386 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libeasel.a build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2022-10-25T18:55:50,583 generating build/temp.linux-armv7l-cpython-39/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-39/p7_hmmfile.c 2022-10-25T18:55:50,587 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-10-25T18:55:50,587 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-10-25T18:55:50,588 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-10-25T18:55:50,588 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2022-10-25T18:55:50,588 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-10-25T18:55:50,589 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2022-10-25T18:55:50,589 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o 2022-10-25T18:55:50,590 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o 2022-10-25T18:55:50,591 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o 2022-10-25T18:55:50,602 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o 2022-10-25T18:55:50,804 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-10-25T18:55:50,805 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:50,805 829 | #error "No vector implementation enabled" 2022-10-25T18:55:50,805 | ^~~~~ 2022-10-25T18:55:50,807 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,807 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:50,807 | ^~~~~~ 2022-10-25T18:55:50,807 In file included from vendor/hmmer/src/build.c:32: 2022-10-25T18:55:50,808 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:50,808 829 | #error "No vector implementation enabled" 2022-10-25T18:55:50,808 | ^~~~~ 2022-10-25T18:55:50,808 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,808 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:50,809 | ^~~~~~ 2022-10-25T18:55:50,809 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,810 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:50,810 | ^~~~~~ 2022-10-25T18:55:50,810 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,811 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:50,811 | ^~~~~~ 2022-10-25T18:55:50,812 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,812 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:50,813 | ^~~~~~ 2022-10-25T18:55:50,813 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,813 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:50,814 | ^~~~~~ 2022-10-25T18:55:50,814 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,815 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:50,816 | ^~~~~~ 2022-10-25T18:55:50,816 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,816 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:50,816 | ^~~~~~ 2022-10-25T18:55:50,817 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,817 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:50,818 | ^~~~~~~~~~~ 2022-10-25T18:55:50,819 | P7_PROFILE 2022-10-25T18:55:50,819 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,819 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:50,820 | ^~~~~~~~~~~ 2022-10-25T18:55:50,820 | P7_PROFILE 2022-10-25T18:55:50,821 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,821 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:50,821 | ^~~~~~~~~~~ 2022-10-25T18:55:50,821 | P7_PROFILE 2022-10-25T18:55:50,821 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,822 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:50,822 | ^~~~~~~~~~~ 2022-10-25T18:55:50,822 | P7_PROFILE 2022-10-25T18:55:50,822 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,823 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:50,823 | ^~~~~~~~~~~ 2022-10-25T18:55:50,823 | P7_PROFILE 2022-10-25T18:55:50,823 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,823 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:50,824 | ^~~~~~~~~~~ 2022-10-25T18:55:50,824 | P7_PROFILE 2022-10-25T18:55:50,825 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,825 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:50,825 | ^~~~~~~~~~~ 2022-10-25T18:55:50,826 | P7_PROFILE 2022-10-25T18:55:50,826 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,827 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:50,827 | ^~~~~~~~~~~ 2022-10-25T18:55:50,827 | P7_PROFILE 2022-10-25T18:55:50,828 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,828 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:50,828 | ^~~~~~~~~~~ 2022-10-25T18:55:50,829 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,829 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:50,830 | ^~~~~~~~~~~ 2022-10-25T18:55:50,830 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,830 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:50,830 | ^~~~~~~~~~~ 2022-10-25T18:55:50,830 | P7_PROFILE 2022-10-25T18:55:50,831 In file included from vendor/hmmer/src/errors.c:19: 2022-10-25T18:55:50,831 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:50,832 829 | #error "No vector implementation enabled" 2022-10-25T18:55:50,832 | ^~~~~ 2022-10-25T18:55:50,833 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,833 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:50,834 | ^~~~~~~~~~~ 2022-10-25T18:55:50,834 | P7_PROFILE 2022-10-25T18:55:50,835 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,835 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:50,836 | ^~~~~~ 2022-10-25T18:55:50,836 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,837 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:50,837 | ^~~~~~ 2022-10-25T18:55:50,837 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,838 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:50,838 | ^~~~~~ 2022-10-25T18:55:50,839 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,839 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:50,840 | ^~~~~~~~~~~ 2022-10-25T18:55:50,840 | P7_PROFILE 2022-10-25T18:55:50,840 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,840 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:50,841 | ^~~~~~ 2022-10-25T18:55:50,841 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,842 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:50,842 | ^~~~~~~~~~~ 2022-10-25T18:55:50,843 | P7_PROFILE 2022-10-25T18:55:50,843 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,843 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,843 | ^~~~~~~~~~~ 2022-10-25T18:55:50,844 | P7_PROFILE 2022-10-25T18:55:50,845 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,845 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,846 | ^~~~~~~~~~~ 2022-10-25T18:55:50,846 | P7_PROFILE 2022-10-25T18:55:50,846 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,847 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,847 | ^~~~~~ 2022-10-25T18:55:50,847 | P7_GMX 2022-10-25T18:55:50,847 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,847 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,847 | ^~~~~~ 2022-10-25T18:55:50,848 | P7_GMX 2022-10-25T18:55:50,849 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,849 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,850 | ^~~~~~ 2022-10-25T18:55:50,850 | P7_GMX 2022-10-25T18:55:50,851 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,851 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,851 | ^~~~~~ 2022-10-25T18:55:50,852 | P7_GMX 2022-10-25T18:55:50,852 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,853 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,854 | ^~~~~~ 2022-10-25T18:55:50,854 | P7_GMX 2022-10-25T18:55:50,855 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,855 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,855 | ^~~~~~ 2022-10-25T18:55:50,855 | P7_GMX 2022-10-25T18:55:50,856 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,856 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:50,857 | ^~~~~~~~~~~ 2022-10-25T18:55:50,857 | P7_PROFILE 2022-10-25T18:55:50,858 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,858 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,859 | ^~~~~~ 2022-10-25T18:55:50,859 | P7_GMX 2022-10-25T18:55:50,859 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,859 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,860 | ^~~~~~ 2022-10-25T18:55:50,860 | P7_GMX 2022-10-25T18:55:50,860 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,860 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:50,861 | ^~~~~~~~~~~ 2022-10-25T18:55:50,862 | P7_PROFILE 2022-10-25T18:55:50,862 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,863 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:50,863 | ^~~~~~~~~~~ 2022-10-25T18:55:50,863 | P7_PROFILE 2022-10-25T18:55:50,863 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,864 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:50,864 | ^~~~~~~~~~~ 2022-10-25T18:55:50,865 | P7_PROFILE 2022-10-25T18:55:50,866 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,866 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:50,866 | ^~~~~~~~~~~ 2022-10-25T18:55:50,866 | P7_PROFILE 2022-10-25T18:55:50,867 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,867 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:50,867 | ^~~~~~~~~~~ 2022-10-25T18:55:50,867 | P7_PROFILE 2022-10-25T18:55:50,867 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,867 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:50,868 | ^~~~~~~~~~~ 2022-10-25T18:55:50,868 | P7_PROFILE 2022-10-25T18:55:50,869 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,869 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:50,869 | ^~~~~~~~~~~ 2022-10-25T18:55:50,870 | P7_PROFILE 2022-10-25T18:55:50,870 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,871 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:50,871 | ^~~~~~~~~~~ 2022-10-25T18:55:50,872 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,872 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:50,872 | ^~~~~~~~~~~ 2022-10-25T18:55:50,873 | P7_PROFILE 2022-10-25T18:55:50,873 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,873 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:50,873 | ^~~~~~~~~~~ 2022-10-25T18:55:50,873 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,874 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:50,874 | ^~~~~~~~~~~ 2022-10-25T18:55:50,875 | P7_PROFILE 2022-10-25T18:55:50,875 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,876 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:50,876 | ^~~~~~~~~~~ 2022-10-25T18:55:50,876 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,876 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:50,877 | ^~~~~~~~~~~ 2022-10-25T18:55:50,877 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,877 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:50,878 | ^~~~~~~~~~~ 2022-10-25T18:55:50,878 | P7_PROFILE 2022-10-25T18:55:50,878 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,879 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:50,879 | ^~~~~~~~~~~ 2022-10-25T18:55:50,879 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,879 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:50,879 | ^~~~~~~~~~~ 2022-10-25T18:55:50,880 | P7_PROFILE 2022-10-25T18:55:50,880 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,880 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:50,880 | ^~~~~~~~~~~ 2022-10-25T18:55:50,880 | P7_PROFILE 2022-10-25T18:55:50,881 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,881 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:50,881 | ^~~~~~~~~~~ 2022-10-25T18:55:50,881 | P7_PROFILE 2022-10-25T18:55:50,882 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,882 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,883 | ^~~~~~~~~~~ 2022-10-25T18:55:50,883 | P7_PROFILE 2022-10-25T18:55:50,884 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,884 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:50,884 | ^~~~~~~~~~~ 2022-10-25T18:55:50,885 | P7_PROFILE 2022-10-25T18:55:50,885 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,886 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,886 | ^~~~~~ 2022-10-25T18:55:50,886 | P7_GMX 2022-10-25T18:55:50,887 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,887 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:50,887 | ^~~~~~~~~~~ 2022-10-25T18:55:50,887 | P7_PROFILE 2022-10-25T18:55:50,888 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,888 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,888 | ^~~~~~ 2022-10-25T18:55:50,889 | P7_GMX 2022-10-25T18:55:50,889 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,889 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,890 | ^~~~~~ 2022-10-25T18:55:50,890 | P7_GMX 2022-10-25T18:55:50,890 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,890 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:50,891 | ^~~~~~~~~~~ 2022-10-25T18:55:50,891 | P7_PROFILE 2022-10-25T18:55:50,891 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,891 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,892 | ^~~~~~ 2022-10-25T18:55:50,892 | P7_GMX 2022-10-25T18:55:50,893 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,894 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:50,895 | ^~~~~~~~~~~ 2022-10-25T18:55:50,895 | P7_PROFILE 2022-10-25T18:55:50,895 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,895 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:50,896 | ^~~~~~~~~~~ 2022-10-25T18:55:50,896 | P7_PROFILE 2022-10-25T18:55:50,896 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,896 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:50,896 | ^~~~~~~~~~~ 2022-10-25T18:55:50,897 | P7_PROFILE 2022-10-25T18:55:50,897 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,898 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:50,898 | ^~~~~~~~~~~ 2022-10-25T18:55:50,898 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,899 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:50,899 | ^~~~~~~~~~~ 2022-10-25T18:55:50,899 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,899 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:50,899 | ^~~~~~~~~~~ 2022-10-25T18:55:50,900 | P7_PROFILE 2022-10-25T18:55:50,900 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,900 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:50,900 | ^~~~~~~~~~~ 2022-10-25T18:55:50,900 | P7_PROFILE 2022-10-25T18:55:50,901 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,901 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:50,901 | ^~~~~~~~~~~ 2022-10-25T18:55:50,902 | P7_PROFILE 2022-10-25T18:55:50,905 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,905 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:50,906 | ^~~~~~~~~~~ 2022-10-25T18:55:50,906 | P7_PROFILE 2022-10-25T18:55:50,908 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-10-25T18:55:50,910 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o 2022-10-25T18:55:50,924 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-10-25T18:55:50,925 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o 2022-10-25T18:55:50,931 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-10-25T18:55:50,931 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:50,931 829 | #error "No vector implementation enabled" 2022-10-25T18:55:50,931 | ^~~~~ 2022-10-25T18:55:50,932 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,932 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:50,933 | ^~~~~~ 2022-10-25T18:55:50,933 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,933 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:50,933 | ^~~~~~ 2022-10-25T18:55:50,934 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,934 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:50,935 | ^~~~~~ 2022-10-25T18:55:50,935 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:50,935 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:50,935 | ^~~~~~ 2022-10-25T18:55:50,937 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-10-25T18:55:50,938 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,939 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:50,939 | ^~~~~~~~~~~ 2022-10-25T18:55:50,939 | P7_PROFILE 2022-10-25T18:55:50,940 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o 2022-10-25T18:55:50,940 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,941 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:50,941 | ^~~~~~~~~~~ 2022-10-25T18:55:50,942 | P7_PROFILE 2022-10-25T18:55:50,943 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,944 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:50,944 | ^~~~~~~~~~~ 2022-10-25T18:55:50,945 | P7_PROFILE 2022-10-25T18:55:50,946 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,946 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:50,947 | ^~~~~~~~~~~ 2022-10-25T18:55:50,947 | P7_PROFILE 2022-10-25T18:55:50,948 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,949 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:50,949 | ^~~~~~~~~~~ 2022-10-25T18:55:50,952 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,953 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:50,953 | ^~~~~~~~~~~ 2022-10-25T18:55:50,954 | P7_PROFILE 2022-10-25T18:55:50,955 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,955 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:50,955 | ^~~~~~~~~~~ 2022-10-25T18:55:50,956 | P7_PROFILE 2022-10-25T18:55:50,958 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,959 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,959 | ^~~~~~~~~~~ 2022-10-25T18:55:50,959 | P7_PROFILE 2022-10-25T18:55:50,961 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,961 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,962 | ^~~~~~ 2022-10-25T18:55:50,962 | P7_GMX 2022-10-25T18:55:50,963 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,964 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,964 | ^~~~~~ 2022-10-25T18:55:50,965 | P7_GMX 2022-10-25T18:55:50,966 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,967 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,967 | ^~~~~~ 2022-10-25T18:55:50,968 | P7_GMX 2022-10-25T18:55:50,969 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:50,969 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:50,970 | ^~~~~~ 2022-10-25T18:55:50,970 | P7_GMX 2022-10-25T18:55:50,973 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,974 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:50,974 | ^~~~~~~~~~~ 2022-10-25T18:55:50,975 | P7_PROFILE 2022-10-25T18:55:50,976 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,977 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:50,977 | ^~~~~~~~~~~ 2022-10-25T18:55:50,978 | P7_PROFILE 2022-10-25T18:55:50,979 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,980 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:50,980 | ^~~~~~~~~~~ 2022-10-25T18:55:50,980 | P7_PROFILE 2022-10-25T18:55:50,980 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,980 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:50,980 | ^~~~~~~~~~~ 2022-10-25T18:55:50,981 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:50,981 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:50,982 | ^~~~~~~~~~~ 2022-10-25T18:55:50,984 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,985 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:50,985 | ^~~~~~~~~~~ 2022-10-25T18:55:50,985 | P7_PROFILE 2022-10-25T18:55:50,987 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,987 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:50,987 | ^~~~~~~~~~~ 2022-10-25T18:55:50,988 | P7_PROFILE 2022-10-25T18:55:50,992 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:50,993 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:50,993 | ^~~~~~~~~~~ 2022-10-25T18:55:50,993 | P7_PROFILE 2022-10-25T18:55:51,014 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-10-25T18:55:51,015 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o 2022-10-25T18:55:51,040 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-10-25T18:55:51,041 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o 2022-10-25T18:55:51,072 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-10-25T18:55:51,073 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o 2022-10-25T18:55:51,150 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-10-25T18:55:51,151 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o 2022-10-25T18:55:51,164 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-10-25T18:55:51,165 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,165 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,165 | ^~~~~ 2022-10-25T18:55:51,166 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,166 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,166 | ^~~~~~ 2022-10-25T18:55:51,166 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,166 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,166 | ^~~~~~ 2022-10-25T18:55:51,167 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,167 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,167 | ^~~~~~ 2022-10-25T18:55:51,168 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,168 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,169 | ^~~~~~ 2022-10-25T18:55:51,170 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,171 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,171 | ^~~~~~~~~~~ 2022-10-25T18:55:51,172 | P7_PROFILE 2022-10-25T18:55:51,174 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,175 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,175 | ^~~~~~~~~~~ 2022-10-25T18:55:51,175 | P7_PROFILE 2022-10-25T18:55:51,178 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-10-25T18:55:51,179 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o 2022-10-25T18:55:51,183 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,184 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:51,184 | ^~~~~~~~~~~ 2022-10-25T18:55:51,184 | P7_PROFILE 2022-10-25T18:55:51,186 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,186 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:51,186 | ^~~~~~~~~~~ 2022-10-25T18:55:51,186 | P7_PROFILE 2022-10-25T18:55:51,188 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,189 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:51,189 | ^~~~~~~~~~~ 2022-10-25T18:55:51,192 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,193 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:51,193 | ^~~~~~~~~~~ 2022-10-25T18:55:51,193 | P7_PROFILE 2022-10-25T18:55:51,195 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,195 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:51,196 | ^~~~~~~~~~~ 2022-10-25T18:55:51,196 | P7_PROFILE 2022-10-25T18:55:51,198 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,199 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,199 | ^~~~~~~~~~~ 2022-10-25T18:55:51,200 | P7_PROFILE 2022-10-25T18:55:51,201 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,202 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,202 | ^~~~~~ 2022-10-25T18:55:51,202 | P7_GMX 2022-10-25T18:55:51,205 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,205 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,205 | ^~~~~~ 2022-10-25T18:55:51,206 | P7_GMX 2022-10-25T18:55:51,214 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,215 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,215 | ^~~~~~ 2022-10-25T18:55:51,215 | P7_GMX 2022-10-25T18:55:51,215 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,216 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,216 | ^~~~~~ 2022-10-25T18:55:51,216 | P7_GMX 2022-10-25T18:55:51,216 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,216 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:51,216 | ^~~~~~~~~~~ 2022-10-25T18:55:51,217 | P7_PROFILE 2022-10-25T18:55:51,217 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,218 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:51,218 | ^~~~~~~~~~~ 2022-10-25T18:55:51,218 | P7_PROFILE 2022-10-25T18:55:51,219 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,220 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:51,220 | ^~~~~~~~~~~ 2022-10-25T18:55:51,220 | P7_PROFILE 2022-10-25T18:55:51,220 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,221 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:51,221 | ^~~~~~~~~~~ 2022-10-25T18:55:51,222 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,222 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:51,222 | ^~~~~~~~~~~ 2022-10-25T18:55:51,224 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,224 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:51,225 | ^~~~~~~~~~~ 2022-10-25T18:55:51,225 | P7_PROFILE 2022-10-25T18:55:51,227 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,227 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:51,227 | ^~~~~~~~~~~ 2022-10-25T18:55:51,227 | P7_PROFILE 2022-10-25T18:55:51,232 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,232 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:51,233 | ^~~~~~~~~~~ 2022-10-25T18:55:51,233 | P7_PROFILE 2022-10-25T18:55:51,254 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-10-25T18:55:51,255 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o 2022-10-25T18:55:51,281 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-10-25T18:55:51,281 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,282 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,282 | ^~~~~ 2022-10-25T18:55:51,282 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,283 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,283 | ^~~~~~ 2022-10-25T18:55:51,283 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,283 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,284 | ^~~~~~ 2022-10-25T18:55:51,284 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,285 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,285 | ^~~~~~ 2022-10-25T18:55:51,286 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,286 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,286 | ^~~~~~ 2022-10-25T18:55:51,287 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,288 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,288 | ^~~~~~~~~~~ 2022-10-25T18:55:51,288 | P7_PROFILE 2022-10-25T18:55:51,290 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,291 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,291 | ^~~~~~~~~~~ 2022-10-25T18:55:51,291 | P7_PROFILE 2022-10-25T18:55:51,293 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,294 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:51,294 | ^~~~~~~~~~~ 2022-10-25T18:55:51,294 | P7_PROFILE 2022-10-25T18:55:51,296 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,297 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:51,297 | ^~~~~~~~~~~ 2022-10-25T18:55:51,297 | P7_PROFILE 2022-10-25T18:55:51,299 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,299 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:51,299 | ^~~~~~~~~~~ 2022-10-25T18:55:51,302 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,303 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:51,303 | ^~~~~~~~~~~ 2022-10-25T18:55:51,304 | P7_PROFILE 2022-10-25T18:55:51,306 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,306 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:51,307 | ^~~~~~~~~~~ 2022-10-25T18:55:51,307 | P7_PROFILE 2022-10-25T18:55:51,309 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,310 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,310 | ^~~~~~~~~~~ 2022-10-25T18:55:51,310 | P7_PROFILE 2022-10-25T18:55:51,314 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,315 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,315 | ^~~~~~ 2022-10-25T18:55:51,315 | P7_GMX 2022-10-25T18:55:51,315 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,316 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,316 | ^~~~~~ 2022-10-25T18:55:51,316 | P7_GMX 2022-10-25T18:55:51,318 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,319 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,319 | ^~~~~~ 2022-10-25T18:55:51,319 | P7_GMX 2022-10-25T18:55:51,322 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,322 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,323 | ^~~~~~ 2022-10-25T18:55:51,323 | P7_GMX 2022-10-25T18:55:51,325 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,326 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:51,326 | ^~~~~~~~~~~ 2022-10-25T18:55:51,327 | P7_PROFILE 2022-10-25T18:55:51,329 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,329 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:51,330 | ^~~~~~~~~~~ 2022-10-25T18:55:51,330 | P7_PROFILE 2022-10-25T18:55:51,332 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,333 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:51,333 | ^~~~~~~~~~~ 2022-10-25T18:55:51,333 | P7_PROFILE 2022-10-25T18:55:51,333 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,334 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:51,334 | ^~~~~~~~~~~ 2022-10-25T18:55:51,335 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,335 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:51,335 | ^~~~~~~~~~~ 2022-10-25T18:55:51,338 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,339 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:51,339 | ^~~~~~~~~~~ 2022-10-25T18:55:51,339 | P7_PROFILE 2022-10-25T18:55:51,340 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,341 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:51,341 | ^~~~~~~~~~~ 2022-10-25T18:55:51,341 | P7_PROFILE 2022-10-25T18:55:51,347 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,348 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:51,348 | ^~~~~~~~~~~ 2022-10-25T18:55:51,348 | P7_PROFILE 2022-10-25T18:55:51,371 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-10-25T18:55:51,371 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o 2022-10-25T18:55:51,401 In file included from vendor/hmmer/src/hmmer.c:18: 2022-10-25T18:55:51,401 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,402 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,402 | ^~~~~ 2022-10-25T18:55:51,402 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,403 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,403 | ^~~~~~ 2022-10-25T18:55:51,403 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,403 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,404 | ^~~~~~ 2022-10-25T18:55:51,404 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,404 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,405 | ^~~~~~ 2022-10-25T18:55:51,405 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,405 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,406 | ^~~~~~ 2022-10-25T18:55:51,407 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,408 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,408 | ^~~~~~~~~~~ 2022-10-25T18:55:51,408 | P7_PROFILE 2022-10-25T18:55:51,410 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,410 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,411 | ^~~~~~~~~~~ 2022-10-25T18:55:51,411 | P7_PROFILE 2022-10-25T18:55:51,412 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,413 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:51,413 | ^~~~~~~~~~~ 2022-10-25T18:55:51,413 | P7_PROFILE 2022-10-25T18:55:51,415 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,415 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:51,415 | ^~~~~~~~~~~ 2022-10-25T18:55:51,415 | P7_PROFILE 2022-10-25T18:55:51,418 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,418 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:51,419 | ^~~~~~~~~~~ 2022-10-25T18:55:51,420 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,421 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:51,421 | ^~~~~~~~~~~ 2022-10-25T18:55:51,422 | P7_PROFILE 2022-10-25T18:55:51,424 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,425 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:51,425 | ^~~~~~~~~~~ 2022-10-25T18:55:51,425 | P7_PROFILE 2022-10-25T18:55:51,426 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,427 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,427 | ^~~~~~~~~~~ 2022-10-25T18:55:51,428 | P7_PROFILE 2022-10-25T18:55:51,431 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,431 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,431 | ^~~~~~ 2022-10-25T18:55:51,432 | P7_GMX 2022-10-25T18:55:51,433 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,433 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,433 | ^~~~~~ 2022-10-25T18:55:51,433 | P7_GMX 2022-10-25T18:55:51,435 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,435 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,436 | ^~~~~~ 2022-10-25T18:55:51,436 | P7_GMX 2022-10-25T18:55:51,438 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,438 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,438 | ^~~~~~ 2022-10-25T18:55:51,439 | P7_GMX 2022-10-25T18:55:51,443 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,443 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:51,443 | ^~~~~~~~~~~ 2022-10-25T18:55:51,443 | P7_PROFILE 2022-10-25T18:55:51,444 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,445 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:51,445 | ^~~~~~~~~~~ 2022-10-25T18:55:51,446 | P7_PROFILE 2022-10-25T18:55:51,450 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,451 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:51,451 | ^~~~~~~~~~~ 2022-10-25T18:55:51,451 | P7_PROFILE 2022-10-25T18:55:51,451 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,452 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:51,452 | ^~~~~~~~~~~ 2022-10-25T18:55:51,453 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,453 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:51,453 | ^~~~~~~~~~~ 2022-10-25T18:55:51,454 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,454 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:51,454 | ^~~~~~~~~~~ 2022-10-25T18:55:51,454 | P7_PROFILE 2022-10-25T18:55:51,454 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,455 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:51,455 | ^~~~~~~~~~~ 2022-10-25T18:55:51,455 | P7_PROFILE 2022-10-25T18:55:51,464 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,465 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:51,465 | ^~~~~~~~~~~ 2022-10-25T18:55:51,465 | P7_PROFILE 2022-10-25T18:55:51,467 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-10-25T18:55:51,467 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,467 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,468 | ^~~~~ 2022-10-25T18:55:51,469 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,470 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,470 | ^~~~~~ 2022-10-25T18:55:51,470 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,471 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,471 | ^~~~~~ 2022-10-25T18:55:51,474 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,474 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,475 | ^~~~~~ 2022-10-25T18:55:51,475 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,475 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,475 | ^~~~~~ 2022-10-25T18:55:51,476 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-10-25T18:55:51,476 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o 2022-10-25T18:55:51,478 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,478 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,478 | ^~~~~~~~~~~ 2022-10-25T18:55:51,478 | P7_PROFILE 2022-10-25T18:55:51,481 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,482 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,482 | ^~~~~~~~~~~ 2022-10-25T18:55:51,482 | P7_PROFILE 2022-10-25T18:55:51,485 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,485 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:51,486 | ^~~~~~~~~~~ 2022-10-25T18:55:51,486 | P7_PROFILE 2022-10-25T18:55:51,489 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,489 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:51,489 | ^~~~~~~~~~~ 2022-10-25T18:55:51,489 | P7_PROFILE 2022-10-25T18:55:51,492 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,492 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:51,493 | ^~~~~~~~~~~ 2022-10-25T18:55:51,496 In file included from vendor/hmmer/src/tracealign.c:15: 2022-10-25T18:55:51,496 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,497 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,497 | ^~~~~ 2022-10-25T18:55:51,498 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,498 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,498 | ^~~~~~ 2022-10-25T18:55:51,499 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,499 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,499 | ^~~~~~ 2022-10-25T18:55:51,500 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,500 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,500 | ^~~~~~ 2022-10-25T18:55:51,501 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,501 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,501 | ^~~~~~ 2022-10-25T18:55:51,502 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,502 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:51,502 | ^~~~~~~~~~~ 2022-10-25T18:55:51,503 | P7_PROFILE 2022-10-25T18:55:51,503 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,504 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,504 | ^~~~~~~~~~~ 2022-10-25T18:55:51,505 | P7_PROFILE 2022-10-25T18:55:51,506 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,507 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,507 | ^~~~~~~~~~~ 2022-10-25T18:55:51,508 | P7_PROFILE 2022-10-25T18:55:51,514 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,515 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:51,515 | ^~~~~~~~~~~ 2022-10-25T18:55:51,515 | P7_PROFILE 2022-10-25T18:55:51,515 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,515 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:51,516 | ^~~~~~~~~~~ 2022-10-25T18:55:51,516 | P7_PROFILE 2022-10-25T18:55:51,517 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,517 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:51,517 | ^~~~~~~~~~~ 2022-10-25T18:55:51,517 | P7_PROFILE 2022-10-25T18:55:51,518 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,518 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,518 | ^~~~~~~~~~~ 2022-10-25T18:55:51,518 | P7_PROFILE 2022-10-25T18:55:51,518 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,518 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:51,519 | ^~~~~~~~~~~ 2022-10-25T18:55:51,519 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,520 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:51,520 | ^~~~~~~~~~~ 2022-10-25T18:55:51,520 | P7_PROFILE 2022-10-25T18:55:51,533 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,533 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,534 | ^~~~~~ 2022-10-25T18:55:51,534 | P7_GMX 2022-10-25T18:55:51,534 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,534 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:51,534 | ^~~~~~~~~~~ 2022-10-25T18:55:51,535 | P7_PROFILE 2022-10-25T18:55:51,535 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,536 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,536 | ^~~~~~ 2022-10-25T18:55:51,536 | P7_GMX 2022-10-25T18:55:51,536 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,537 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,537 | ^~~~~~~~~~~ 2022-10-25T18:55:51,537 | P7_PROFILE 2022-10-25T18:55:51,537 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,537 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,537 | ^~~~~~ 2022-10-25T18:55:51,537 | P7_GMX 2022-10-25T18:55:51,538 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,538 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,538 | ^~~~~~ 2022-10-25T18:55:51,538 | P7_GMX 2022-10-25T18:55:51,538 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,539 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,539 | ^~~~~~ 2022-10-25T18:55:51,539 | P7_GMX 2022-10-25T18:55:51,540 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,540 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,540 | ^~~~~~ 2022-10-25T18:55:51,541 | P7_GMX 2022-10-25T18:55:51,541 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,541 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,541 | ^~~~~~ 2022-10-25T18:55:51,542 | P7_GMX 2022-10-25T18:55:51,542 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,542 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,543 | ^~~~~~ 2022-10-25T18:55:51,543 | P7_GMX 2022-10-25T18:55:51,543 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,544 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:51,544 | ^~~~~~~~~~~ 2022-10-25T18:55:51,544 | P7_PROFILE 2022-10-25T18:55:51,545 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,545 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:51,546 | ^~~~~~~~~~~ 2022-10-25T18:55:51,546 | P7_PROFILE 2022-10-25T18:55:51,548 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,548 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:51,549 | ^~~~~~~~~~~ 2022-10-25T18:55:51,549 | P7_PROFILE 2022-10-25T18:55:51,549 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,549 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:51,549 | ^~~~~~~~~~~ 2022-10-25T18:55:51,550 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,550 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:51,551 | ^~~~~~~~~~~ 2022-10-25T18:55:51,553 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,553 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:51,554 | ^~~~~~~~~~~ 2022-10-25T18:55:51,554 | P7_PROFILE 2022-10-25T18:55:51,555 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,556 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:51,556 | ^~~~~~~~~~~ 2022-10-25T18:55:51,556 | P7_PROFILE 2022-10-25T18:55:51,557 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,557 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:51,557 | ^~~~~~~~~~~ 2022-10-25T18:55:51,557 | P7_PROFILE 2022-10-25T18:55:51,561 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,561 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:51,561 | ^~~~~~~~~~~ 2022-10-25T18:55:51,561 | P7_PROFILE 2022-10-25T18:55:51,562 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,562 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:51,563 | ^~~~~~~~~~~ 2022-10-25T18:55:51,563 | P7_PROFILE 2022-10-25T18:55:51,569 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,570 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:51,570 | ^~~~~~~~~~~ 2022-10-25T18:55:51,570 | P7_PROFILE 2022-10-25T18:55:51,571 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-10-25T18:55:51,571 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,572 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:51,573 | ^~~~~~~~~~~ 2022-10-25T18:55:51,573 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,573 239 | P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-10-25T18:55:51,574 | ^~~~~~ 2022-10-25T18:55:51,574 | P7_GMX 2022-10-25T18:55:51,575 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,576 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:51,576 | ^~~~~~~~~~~ 2022-10-25T18:55:51,576 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,577 240 | P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-10-25T18:55:51,577 | ^~~~~~ 2022-10-25T18:55:51,577 | P7_GMX 2022-10-25T18:55:51,577 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,578 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:51,578 | ^~~~~~~~~~~ 2022-10-25T18:55:51,579 | P7_PROFILE 2022-10-25T18:55:51,579 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,579 244 | P7_OPROFILE *om = NULL; 2022-10-25T18:55:51,580 | ^~~~~~~~~~~ 2022-10-25T18:55:51,580 | P7_PROFILE 2022-10-25T18:55:51,580 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,581 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-10-25T18:55:51,581 | ^~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,581 | p7_profile_Create 2022-10-25T18:55:51,581 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-10-25T18:55:51,581 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-10-25T18:55:51,582 | ^ 2022-10-25T18:55:51,584 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,584 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:51,585 | ^~~~~~~~~~~ 2022-10-25T18:55:51,585 | P7_PROFILE 2022-10-25T18:55:51,585 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,586 258 | p7_oprofile_Convert(gm, om); 2022-10-25T18:55:51,586 | ^~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,587 | p7_profile_Compare 2022-10-25T18:55:51,588 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,589 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-10-25T18:55:51,589 | ^~~~~~~~~~~~~ 2022-10-25T18:55:51,589 | p7_gmx_Create 2022-10-25T18:55:51,589 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-10-25T18:55:51,590 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-10-25T18:55:51,590 | ^ 2022-10-25T18:55:51,591 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-10-25T18:55:51,591 262 | oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-10-25T18:55:51,591 | ^ 2022-10-25T18:55:51,592 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,592 271 | p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-10-25T18:55:51,593 | ^~~~~~~~~~~~~ 2022-10-25T18:55:51,593 | p7_gmx_GrowTo 2022-10-25T18:55:51,597 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,598 274 | p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-10-25T18:55:51,598 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,599 | p7_ReconfigLength 2022-10-25T18:55:51,600 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,600 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:51,600 | ^~~~~~~~~~~ 2022-10-25T18:55:51,601 | P7_PROFILE 2022-10-25T18:55:51,601 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,602 276 | p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-10-25T18:55:51,602 | ^~~~~~~~~~ 2022-10-25T18:55:51,602 | p7_GForward 2022-10-25T18:55:51,603 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,603 277 | p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-10-25T18:55:51,604 | ^~~~~~~~~~~ 2022-10-25T18:55:51,604 | p7_GBackward 2022-10-25T18:55:51,606 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,606 279 | status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-10-25T18:55:51,606 | ^~~~~~~~~~~ 2022-10-25T18:55:51,606 | p7_GDecoding 2022-10-25T18:55:51,609 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,609 283 | p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-10-25T18:55:51,610 | ^~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,610 | p7_GOptimalAccuracy 2022-10-25T18:55:51,612 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,613 284 | p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-10-25T18:55:51,613 | ^~~~~~~~~~ 2022-10-25T18:55:51,613 | p7_GOATrace 2022-10-25T18:55:51,618 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,618 346 | p7_omx_Reuse(oxf); 2022-10-25T18:55:51,619 | ^~~~~~~~~~~~ 2022-10-25T18:55:51,619 | p7_gmx_Reuse 2022-10-25T18:55:51,619 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-10-25T18:55:51,620 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,620 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,620 | ^~~~~ 2022-10-25T18:55:51,621 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,621 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,621 | ^~~~~~ 2022-10-25T18:55:51,621 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,622 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,622 | ^~~~~~ 2022-10-25T18:55:51,623 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,623 357 | p7_omx_Destroy(oxf); 2022-10-25T18:55:51,624 | ^~~~~~~~~~~~~~ 2022-10-25T18:55:51,624 | p7_gmx_Destroy 2022-10-25T18:55:51,625 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,625 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,625 | ^~~~~~ 2022-10-25T18:55:51,625 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,626 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,626 | ^~~~~~ 2022-10-25T18:55:51,627 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-10-25T18:55:51,627 363 | p7_oprofile_Destroy(om); 2022-10-25T18:55:51,627 | ^~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,628 | p7_profile_Destroy 2022-10-25T18:55:51,628 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,628 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,628 | ^~~~~~~~~~~ 2022-10-25T18:55:51,629 | P7_PROFILE 2022-10-25T18:55:51,629 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,630 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,630 | ^~~~~~~~~~~ 2022-10-25T18:55:51,630 | P7_PROFILE 2022-10-25T18:55:51,631 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,632 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:51,632 | ^~~~~~~~~~~ 2022-10-25T18:55:51,632 | P7_PROFILE 2022-10-25T18:55:51,634 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,634 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:51,634 | ^~~~~~~~~~~ 2022-10-25T18:55:51,634 | P7_PROFILE 2022-10-25T18:55:51,636 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,637 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:51,637 | ^~~~~~~~~~~ 2022-10-25T18:55:51,646 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-10-25T18:55:51,646 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,647 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:51,647 | ^~~~~~~~~~~ 2022-10-25T18:55:51,648 | P7_PROFILE 2022-10-25T18:55:51,648 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o 2022-10-25T18:55:51,648 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,648 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:51,648 | ^~~~~~~~~~~ 2022-10-25T18:55:51,649 | P7_PROFILE 2022-10-25T18:55:51,649 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,650 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,650 | ^~~~~~~~~~~ 2022-10-25T18:55:51,650 | P7_PROFILE 2022-10-25T18:55:51,650 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,651 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,651 | ^~~~~~ 2022-10-25T18:55:51,651 | P7_GMX 2022-10-25T18:55:51,653 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,653 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,653 | ^~~~~~ 2022-10-25T18:55:51,654 | P7_GMX 2022-10-25T18:55:51,654 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,655 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,655 | ^~~~~~ 2022-10-25T18:55:51,656 | P7_GMX 2022-10-25T18:55:51,660 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,660 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,661 | ^~~~~~ 2022-10-25T18:55:51,661 | P7_GMX 2022-10-25T18:55:51,662 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,662 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:51,662 | ^~~~~~~~~~~ 2022-10-25T18:55:51,663 | P7_PROFILE 2022-10-25T18:55:51,665 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,666 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:51,666 | ^~~~~~~~~~~ 2022-10-25T18:55:51,667 | P7_PROFILE 2022-10-25T18:55:51,669 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,669 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:51,669 | ^~~~~~~~~~~ 2022-10-25T18:55:51,670 | P7_PROFILE 2022-10-25T18:55:51,670 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,671 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:51,671 | ^~~~~~~~~~~ 2022-10-25T18:55:51,671 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,672 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:51,672 | ^~~~~~~~~~~ 2022-10-25T18:55:51,673 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,675 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:51,675 | ^~~~~~~~~~~ 2022-10-25T18:55:51,675 | P7_PROFILE 2022-10-25T18:55:51,677 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,678 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:51,678 | ^~~~~~~~~~~ 2022-10-25T18:55:51,679 | P7_PROFILE 2022-10-25T18:55:51,682 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,682 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:51,683 | ^~~~~~~~~~~ 2022-10-25T18:55:51,683 | P7_PROFILE 2022-10-25T18:55:51,685 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-10-25T18:55:51,686 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,686 191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-10-25T18:55:51,687 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,687 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,687 198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-10-25T18:55:51,688 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,688 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,688 203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-10-25T18:55:51,688 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,689 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,689 208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-10-25T18:55:51,689 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,689 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,689 213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-10-25T18:55:51,690 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,690 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,690 218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-10-25T18:55:51,690 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,691 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:51,691 253 | if (ser_size != ptr - (*buf + *n)){ 2022-10-25T18:55:51,691 | ^~ 2022-10-25T18:55:51,691 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-10-25T18:55:51,692 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,692 341 | ret_obj->envsc = *((float *) &host_32bit); 2022-10-25T18:55:51,692 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,693 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,695 347 | ret_obj->domcorrection = *((float *) &host_32bit); 2022-10-25T18:55:51,700 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,701 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,701 353 | ret_obj->dombias = *((float *) &host_32bit); 2022-10-25T18:55:51,701 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,702 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,702 359 | ret_obj->oasc = *((float *) &host_32bit); 2022-10-25T18:55:51,702 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,702 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,703 365 | ret_obj->bitscore = *((float *) &host_32bit); 2022-10-25T18:55:51,703 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,703 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,703 371 | ret_obj->lnP = *((double *) &host_64bit); 2022-10-25T18:55:51,703 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,704 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-25T18:55:51,704 398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-10-25T18:55:51,705 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:51,711 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:51,711 404 | if(ptr - (buf + *n) != obj_size){ 2022-10-25T18:55:51,711 | ^~ 2022-10-25T18:55:51,711 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-10-25T18:55:51,712 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o 2022-10-25T18:55:51,724 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-10-25T18:55:51,725 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o 2022-10-25T18:55:51,740 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-10-25T18:55:51,740 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,740 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,741 | ^~~~~ 2022-10-25T18:55:51,741 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,742 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,742 | ^~~~~~ 2022-10-25T18:55:51,742 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,742 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,742 | ^~~~~~ 2022-10-25T18:55:51,743 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,743 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,743 | ^~~~~~ 2022-10-25T18:55:51,743 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,743 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,744 | ^~~~~~ 2022-10-25T18:55:51,746 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,747 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,747 | ^~~~~~~~~~~ 2022-10-25T18:55:51,747 | P7_PROFILE 2022-10-25T18:55:51,749 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,749 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,750 | ^~~~~~~~~~~ 2022-10-25T18:55:51,750 | P7_PROFILE 2022-10-25T18:55:51,751 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,752 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:51,752 | ^~~~~~~~~~~ 2022-10-25T18:55:51,752 | P7_PROFILE 2022-10-25T18:55:51,754 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,754 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:51,754 | ^~~~~~~~~~~ 2022-10-25T18:55:51,755 | P7_PROFILE 2022-10-25T18:55:51,756 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,756 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:51,756 | ^~~~~~~~~~~ 2022-10-25T18:55:51,759 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,760 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:51,760 | ^~~~~~~~~~~ 2022-10-25T18:55:51,761 | P7_PROFILE 2022-10-25T18:55:51,762 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,763 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:51,763 | ^~~~~~~~~~~ 2022-10-25T18:55:51,763 | P7_PROFILE 2022-10-25T18:55:51,765 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,766 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,766 | ^~~~~~~~~~~ 2022-10-25T18:55:51,767 | P7_PROFILE 2022-10-25T18:55:51,768 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,769 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,769 | ^~~~~~ 2022-10-25T18:55:51,770 | P7_GMX 2022-10-25T18:55:51,771 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,772 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,772 | ^~~~~~ 2022-10-25T18:55:51,772 | P7_GMX 2022-10-25T18:55:51,774 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,775 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,775 | ^~~~~~ 2022-10-25T18:55:51,775 | P7_GMX 2022-10-25T18:55:51,776 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,777 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,777 | ^~~~~~ 2022-10-25T18:55:51,777 | P7_GMX 2022-10-25T18:55:51,781 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,781 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:51,782 | ^~~~~~~~~~~ 2022-10-25T18:55:51,782 | P7_PROFILE 2022-10-25T18:55:51,783 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,784 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:51,785 | ^~~~~~~~~~~ 2022-10-25T18:55:51,785 | P7_PROFILE 2022-10-25T18:55:51,787 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,787 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:51,787 | ^~~~~~~~~~~ 2022-10-25T18:55:51,787 | P7_PROFILE 2022-10-25T18:55:51,788 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,788 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:51,789 | ^~~~~~~~~~~ 2022-10-25T18:55:51,789 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,789 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:51,790 | ^~~~~~~~~~~ 2022-10-25T18:55:51,792 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,792 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:51,792 | ^~~~~~~~~~~ 2022-10-25T18:55:51,793 | P7_PROFILE 2022-10-25T18:55:51,793 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,794 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:51,794 | ^~~~~~~~~~~ 2022-10-25T18:55:51,795 | P7_PROFILE 2022-10-25T18:55:51,799 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,799 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:51,799 | ^~~~~~~~~~~ 2022-10-25T18:55:51,799 | P7_PROFILE 2022-10-25T18:55:51,818 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-10-25T18:55:51,819 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o 2022-10-25T18:55:51,924 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-10-25T18:55:51,924 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,924 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,924 | ^~~~~ 2022-10-25T18:55:51,925 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,925 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,925 | ^~~~~~ 2022-10-25T18:55:51,926 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,926 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,926 | ^~~~~~ 2022-10-25T18:55:51,926 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,926 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,927 | ^~~~~~ 2022-10-25T18:55:51,927 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,928 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,928 | ^~~~~~ 2022-10-25T18:55:51,929 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,930 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,930 | ^~~~~~~~~~~ 2022-10-25T18:55:51,931 | P7_PROFILE 2022-10-25T18:55:51,932 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,933 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,933 | ^~~~~~~~~~~ 2022-10-25T18:55:51,933 | P7_PROFILE 2022-10-25T18:55:51,934 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-10-25T18:55:51,934 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,934 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,934 | ^~~~~ 2022-10-25T18:55:51,944 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,945 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,945 | ^~~~~~ 2022-10-25T18:55:51,945 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,946 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:51,946 | ^~~~~~~~~~~ 2022-10-25T18:55:51,946 | P7_PROFILE 2022-10-25T18:55:51,947 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,947 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,947 | ^~~~~~ 2022-10-25T18:55:51,948 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-10-25T18:55:51,948 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:51,949 829 | #error "No vector implementation enabled" 2022-10-25T18:55:51,949 | ^~~~~ 2022-10-25T18:55:51,949 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,949 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,950 | ^~~~~~ 2022-10-25T18:55:51,950 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,950 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,951 | ^~~~~~ 2022-10-25T18:55:51,951 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,951 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:51,952 | ^~~~~~ 2022-10-25T18:55:51,952 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,953 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:51,953 | ^~~~~~ 2022-10-25T18:55:51,954 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,954 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:51,955 | ^~~~~~ 2022-10-25T18:55:51,955 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,955 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:51,956 | ^~~~~~~~~~~ 2022-10-25T18:55:51,957 | P7_PROFILE 2022-10-25T18:55:51,957 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:51,957 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:51,958 | ^~~~~~ 2022-10-25T18:55:51,958 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,958 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,958 | ^~~~~~~~~~~ 2022-10-25T18:55:51,958 | P7_PROFILE 2022-10-25T18:55:51,959 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,959 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:51,960 | ^~~~~~~~~~~ 2022-10-25T18:55:51,960 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,961 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:51,961 | ^~~~~~~~~~~ 2022-10-25T18:55:51,961 | P7_PROFILE 2022-10-25T18:55:51,961 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,961 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,961 | ^~~~~~~~~~~ 2022-10-25T18:55:51,962 | P7_PROFILE 2022-10-25T18:55:51,962 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,962 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:51,963 | ^~~~~~~~~~~ 2022-10-25T18:55:51,963 | P7_PROFILE 2022-10-25T18:55:51,963 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,964 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:51,974 | ^~~~~~~~~~~ 2022-10-25T18:55:51,975 | P7_PROFILE 2022-10-25T18:55:51,976 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,976 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:51,977 | ^~~~~~~~~~~ 2022-10-25T18:55:51,977 | P7_PROFILE 2022-10-25T18:55:51,977 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,977 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:51,977 | ^~~~~~~~~~~ 2022-10-25T18:55:51,977 | P7_PROFILE 2022-10-25T18:55:51,978 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,978 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:51,995 | ^~~~~~~~~~~ 2022-10-25T18:55:51,995 | P7_PROFILE 2022-10-25T18:55:51,995 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,996 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,996 | ^~~~~~~~~~~ 2022-10-25T18:55:51,996 | P7_PROFILE 2022-10-25T18:55:51,996 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:51,996 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:51,997 | ^~~~~~~~~~~ 2022-10-25T18:55:51,997 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,997 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,997 | ^~~~~~ 2022-10-25T18:55:51,997 | P7_GMX 2022-10-25T18:55:51,998 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:51,998 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:51,998 | ^~~~~~~~~~~ 2022-10-25T18:55:51,998 | P7_PROFILE 2022-10-25T18:55:51,999 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:51,999 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:51,999 | ^~~~~~ 2022-10-25T18:55:51,999 | P7_GMX 2022-10-25T18:55:52,000 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,000 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:52,001 | ^~~~~~~~~~~ 2022-10-25T18:55:52,002 | P7_PROFILE 2022-10-25T18:55:52,003 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,003 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,003 | ^~~~~~ 2022-10-25T18:55:52,004 | P7_GMX 2022-10-25T18:55:52,004 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,004 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,004 | ^~~~~~~~~~~ 2022-10-25T18:55:52,005 | P7_PROFILE 2022-10-25T18:55:52,005 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,005 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,005 | ^~~~~~ 2022-10-25T18:55:52,006 | P7_GMX 2022-10-25T18:55:52,006 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,006 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,006 | ^~~~~~ 2022-10-25T18:55:52,007 | P7_GMX 2022-10-25T18:55:52,007 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,007 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:52,008 | ^~~~~~~~~~~ 2022-10-25T18:55:52,008 | P7_PROFILE 2022-10-25T18:55:52,008 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,008 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:52,009 | ^~~~~~~~~~~ 2022-10-25T18:55:52,009 | P7_PROFILE 2022-10-25T18:55:52,009 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,009 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,010 | ^~~~~~ 2022-10-25T18:55:52,010 | P7_GMX 2022-10-25T18:55:52,010 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,010 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:52,010 | ^~~~~~~~~~~ 2022-10-25T18:55:52,011 | P7_PROFILE 2022-10-25T18:55:52,011 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,011 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:52,012 | ^~~~~~~~~~~ 2022-10-25T18:55:52,012 | P7_PROFILE 2022-10-25T18:55:52,012 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,012 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,013 | ^~~~~~ 2022-10-25T18:55:52,013 | P7_GMX 2022-10-25T18:55:52,013 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,013 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:52,013 | ^~~~~~~~~~~ 2022-10-25T18:55:52,014 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,014 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,014 | ^~~~~~ 2022-10-25T18:55:52,024 | P7_GMX 2022-10-25T18:55:52,025 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,025 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:52,025 | ^~~~~~~~~~~ 2022-10-25T18:55:52,025 | P7_PROFILE 2022-10-25T18:55:52,025 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,026 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:52,026 | ^~~~~~~~~~~ 2022-10-25T18:55:52,026 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,027 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:52,027 | ^~~~~~~~~~~ 2022-10-25T18:55:52,027 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,027 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:52,028 | ^~~~~~~~~~~ 2022-10-25T18:55:52,028 | P7_PROFILE 2022-10-25T18:55:52,028 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,028 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:52,028 | ^~~~~~~~~~~ 2022-10-25T18:55:52,029 | P7_PROFILE 2022-10-25T18:55:52,029 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,029 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:52,029 | ^~~~~~~~~~~ 2022-10-25T18:55:52,030 | P7_PROFILE 2022-10-25T18:55:52,030 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,031 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:52,031 | ^~~~~~~~~~~ 2022-10-25T18:55:52,031 | P7_PROFILE 2022-10-25T18:55:52,032 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,032 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:52,032 | ^~~~~~~~~~~ 2022-10-25T18:55:52,032 | P7_PROFILE 2022-10-25T18:55:52,033 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,033 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:52,033 | ^~~~~~~~~~~ 2022-10-25T18:55:52,033 | P7_PROFILE 2022-10-25T18:55:52,033 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,034 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:52,035 | ^~~~~~~~~~~ 2022-10-25T18:55:52,035 | P7_PROFILE 2022-10-25T18:55:52,035 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,035 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:52,036 | ^~~~~~~~~~~ 2022-10-25T18:55:52,036 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,036 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:52,036 | ^~~~~~~~~~~ 2022-10-25T18:55:52,036 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,037 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:52,037 | ^~~~~~~~~~~ 2022-10-25T18:55:52,037 | P7_PROFILE 2022-10-25T18:55:52,037 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,037 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,037 | ^~~~~~~~~~~ 2022-10-25T18:55:52,038 | P7_PROFILE 2022-10-25T18:55:52,038 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,038 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:52,038 | ^~~~~~~~~~~ 2022-10-25T18:55:52,039 | P7_PROFILE 2022-10-25T18:55:52,039 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,039 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,040 | ^~~~~~ 2022-10-25T18:55:52,040 | P7_GMX 2022-10-25T18:55:52,040 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,041 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:52,041 | ^~~~~~~~~~~ 2022-10-25T18:55:52,041 | P7_PROFILE 2022-10-25T18:55:52,041 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,042 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,042 | ^~~~~~ 2022-10-25T18:55:52,042 | P7_GMX 2022-10-25T18:55:52,042 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,043 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:52,043 | ^~~~~~~~~~~ 2022-10-25T18:55:52,043 | P7_PROFILE 2022-10-25T18:55:52,043 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,044 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,044 | ^~~~~~ 2022-10-25T18:55:52,044 | P7_GMX 2022-10-25T18:55:52,045 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,045 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,046 | ^~~~~~ 2022-10-25T18:55:52,046 | P7_GMX 2022-10-25T18:55:52,046 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,046 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:52,047 | ^~~~~~~~~~~ 2022-10-25T18:55:52,047 | P7_PROFILE 2022-10-25T18:55:52,047 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,047 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:52,048 | ^~~~~~~~~~~ 2022-10-25T18:55:52,048 | P7_PROFILE 2022-10-25T18:55:52,048 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,048 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:52,049 | ^~~~~~~~~~~ 2022-10-25T18:55:52,049 | P7_PROFILE 2022-10-25T18:55:52,049 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,050 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:52,050 | ^~~~~~~~~~~ 2022-10-25T18:55:52,050 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,050 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:52,051 | ^~~~~~~~~~~ 2022-10-25T18:55:52,051 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,051 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:52,051 | ^~~~~~~~~~~ 2022-10-25T18:55:52,052 | P7_PROFILE 2022-10-25T18:55:52,052 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,052 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:52,052 | ^~~~~~~~~~~ 2022-10-25T18:55:52,052 | P7_PROFILE 2022-10-25T18:55:52,053 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,053 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:52,053 | ^~~~~~~~~~~ 2022-10-25T18:55:52,053 | P7_PROFILE 2022-10-25T18:55:52,054 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-10-25T18:55:52,054 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,055 13 | P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-10-25T18:55:52,056 | ^~~~~~~~~~~ 2022-10-25T18:55:52,056 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-10-25T18:55:52,057 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,057 55 | P7_OPROFILE *om = NULL; /* target profile */ 2022-10-25T18:55:52,057 | ^~~~~~~~~~~ 2022-10-25T18:55:52,058 | P7_PROFILE 2022-10-25T18:55:52,058 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-10-25T18:55:52,058 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,058 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:55:52,059 | ^~~~~~~~~~~ 2022-10-25T18:55:52,059 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:55:52,059 158 | if ( size <= 0 ) { \ 2022-10-25T18:55:52,059 | ^~~~ 2022-10-25T18:55:52,059 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-10-25T18:55:52,059 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:55:52,060 | ^~~~~~~~~~~ 2022-10-25T18:55:52,060 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:55:52,060 158 | if ( size <= 0 ) { \ 2022-10-25T18:55:52,060 | ^~~~ 2022-10-25T18:55:52,060 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-10-25T18:55:52,060 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:55:52,061 | ^ 2022-10-25T18:55:52,061 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:55:52,062 158 | if ( size <= 0 ) { \ 2022-10-25T18:55:52,062 | ^~~~ 2022-10-25T18:55:52,062 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-10-25T18:55:52,062 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:55:52,063 | ^ 2022-10-25T18:55:52,063 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:55:52,063 164 | if ( ((p) = malloc(size)) == NULL) { \ 2022-10-25T18:55:52,063 | ^~~~ 2022-10-25T18:55:52,064 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-10-25T18:55:52,064 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-25T18:55:52,064 | ^ 2022-10-25T18:55:52,064 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-10-25T18:55:52,065 166 | esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-10-25T18:55:52,065 | ^~~~ 2022-10-25T18:55:52,066 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-10-25T18:55:52,066 70 | while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-10-25T18:55:52,067 | ^~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:52,067 | p7_profile_Reuse 2022-10-25T18:55:52,067 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-10-25T18:55:52,067 72 | if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-10-25T18:55:52,067 | ^~~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:52,068 | p7_profile_Reuse 2022-10-25T18:55:52,068 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-10-25T18:55:52,069 91 | if (om) p7_oprofile_Destroy(om); 2022-10-25T18:55:52,069 | ^~~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:52,069 | p7_profile_Destroy 2022-10-25T18:55:52,070 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-10-25T18:55:52,070 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,070 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-10-25T18:55:52,071 | ^~~~~~~~~~~ 2022-10-25T18:55:52,071 | P7_PROFILE 2022-10-25T18:55:52,072 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-10-25T18:55:52,072 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-10-25T18:55:52,072 | ^ 2022-10-25T18:55:52,073 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,073 110 | for (i = 0; i < cache->n; i++) 2022-10-25T18:55:52,073 | ^ 2022-10-25T18:55:52,074 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-10-25T18:55:52,074 111 | n += p7_oprofile_Sizeof(cache->list[i]); 2022-10-25T18:55:52,075 | ^~~~~~~~~~~~~~~~~~ 2022-10-25T18:55:52,075 | p7_profile_Sizeof 2022-10-25T18:55:52,075 In file included from vendor/hmmer/src/fm_general.c:14: 2022-10-25T18:55:52,076 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-25T18:55:52,076 829 | #error "No vector implementation enabled" 2022-10-25T18:55:52,076 | ^~~~~ 2022-10-25T18:55:52,076 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-10-25T18:55:52,077 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,077 134 | P7_OPROFILE *om; 2022-10-25T18:55:52,078 | ^~~~~~~~~~~ 2022-10-25T18:55:52,079 | P7_PROFILE 2022-10-25T18:55:52,080 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,080 138 | for (i = 0; i < cache->n; i++) 2022-10-25T18:55:52,081 | ^ 2022-10-25T18:55:52,081 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-10-25T18:55:52,081 141 | if (om->name) free(om->name); 2022-10-25T18:55:52,081 | ^~ 2022-10-25T18:55:52,082 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:52,082 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-25T18:55:52,083 | ^~~~~~ 2022-10-25T18:55:52,083 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-10-25T18:55:52,083 141 | if (om->name) free(om->name); 2022-10-25T18:55:52,084 | ^~ 2022-10-25T18:55:52,084 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-10-25T18:55:52,084 142 | if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-10-25T18:55:52,084 | ^~ 2022-10-25T18:55:52,085 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:52,085 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-25T18:55:52,085 | ^~~~~~ 2022-10-25T18:55:52,086 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:52,086 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-25T18:55:52,086 | ^~~~~~ 2022-10-25T18:55:52,086 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-10-25T18:55:52,087 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-25T18:55:52,087 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-25T18:55:52,087 | ^~~~~~ 2022-10-25T18:55:52,087 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,088 161 | for (i = 0; i < cache->n; i++) 2022-10-25T18:55:52,089 | ^ 2022-10-25T18:55:52,090 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,090 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-25T18:55:52,090 | ^~~~~~~~~~~ 2022-10-25T18:55:52,090 | P7_PROFILE 2022-10-25T18:55:52,090 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,090 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-25T18:55:52,091 | ^~~~~~~~~~~ 2022-10-25T18:55:52,091 | P7_PROFILE 2022-10-25T18:55:52,091 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,091 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-25T18:55:52,091 | ^~~~~~~~~~~ 2022-10-25T18:55:52,091 | P7_PROFILE 2022-10-25T18:55:52,092 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,092 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-25T18:55:52,092 | ^~~~~~~~~~~ 2022-10-25T18:55:52,092 | P7_PROFILE 2022-10-25T18:55:52,092 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,093 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-25T18:55:52,093 | ^~~~~~~~~~~ 2022-10-25T18:55:52,095 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,096 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-25T18:55:52,096 | ^~~~~~~~~~~ 2022-10-25T18:55:52,096 | P7_PROFILE 2022-10-25T18:55:52,098 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,098 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-25T18:55:52,098 | ^~~~~~~~~~~ 2022-10-25T18:55:52,099 | P7_PROFILE 2022-10-25T18:55:52,100 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,101 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,101 | ^~~~~~~~~~~ 2022-10-25T18:55:52,101 | P7_PROFILE 2022-10-25T18:55:52,102 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,103 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,103 | ^~~~~~ 2022-10-25T18:55:52,103 | P7_GMX 2022-10-25T18:55:52,105 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,105 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,105 | ^~~~~~ 2022-10-25T18:55:52,106 | P7_GMX 2022-10-25T18:55:52,107 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,107 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,108 | ^~~~~~ 2022-10-25T18:55:52,108 | P7_GMX 2022-10-25T18:55:52,109 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-25T18:55:52,109 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-25T18:55:52,109 | ^~~~~~ 2022-10-25T18:55:52,110 | P7_GMX 2022-10-25T18:55:52,112 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,113 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-25T18:55:52,113 | ^~~~~~~~~~~ 2022-10-25T18:55:52,113 | P7_PROFILE 2022-10-25T18:55:52,115 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,115 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-25T18:55:52,115 | ^~~~~~~~~~~ 2022-10-25T18:55:52,116 | P7_PROFILE 2022-10-25T18:55:52,117 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,118 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-25T18:55:52,118 | ^~~~~~~~~~~ 2022-10-25T18:55:52,118 | P7_PROFILE 2022-10-25T18:55:52,118 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,118 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-25T18:55:52,118 | ^~~~~~~~~~~ 2022-10-25T18:55:52,119 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-25T18:55:52,119 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-25T18:55:52,119 | ^~~~~~~~~~~ 2022-10-25T18:55:52,121 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,121 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-25T18:55:52,122 | ^~~~~~~~~~~ 2022-10-25T18:55:52,122 | P7_PROFILE 2022-10-25T18:55:52,123 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,124 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-25T18:55:52,124 | ^~~~~~~~~~~ 2022-10-25T18:55:52,124 | P7_PROFILE 2022-10-25T18:55:52,128 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-25T18:55:52,128 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-25T18:55:52,128 | ^~~~~~~~~~~ 2022-10-25T18:55:52,128 | P7_PROFILE 2022-10-25T18:55:52,132 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-10-25T18:55:52,133 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,133 292 | if (ranges[lo].lower > end) return -1; 2022-10-25T18:55:52,133 | ^ 2022-10-25T18:55:52,133 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,133 293 | if (ranges[hi].upper < start) return -1; 2022-10-25T18:55:52,133 | ^ 2022-10-25T18:55:52,133 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,133 297 | if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-10-25T18:55:52,134 | ^ 2022-10-25T18:55:52,134 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,134 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-10-25T18:55:52,134 | ^~ 2022-10-25T18:55:52,134 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,134 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-10-25T18:55:52,134 | ^~ 2022-10-25T18:55:52,135 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,135 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-10-25T18:55:52,135 | ^~ 2022-10-25T18:55:52,135 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,135 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-10-25T18:55:52,135 | ^~ 2022-10-25T18:55:52,135 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-10-25T18:55:52,136 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-10-25T18:55:52,136 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-10-25T18:55:52,136 | ^~ 2022-10-25T18:55:52,136 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,136 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-10-25T18:55:52,136 | ^~ 2022-10-25T18:55:52,136 In file included from vendor/hmmer/src/fm_general.c:12: 2022-10-25T18:55:52,137 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:52,137 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:55:52,137 | ^ 2022-10-25T18:55:52,137 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:55:52,137 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-10-25T18:55:52,137 | ^~~~~~~ 2022-10-25T18:55:52,137 vendor/easel/easel.h:417:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:55:52,137 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-25T18:55:52,138 | ^~~ 2022-10-25T18:55:52,138 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-10-25T18:55:52,138 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-10-25T18:55:52,138 | ^~~~~~~ 2022-10-25T18:55:52,138 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:52,138 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-25T18:55:52,138 | ^ 2022-10-25T18:55:52,139 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-10-25T18:55:52,139 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-10-25T18:55:52,139 | ^~~~~~~ 2022-10-25T18:55:52,139 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-25T18:55:52,139 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-25T18:55:52,139 | ^~~ 2022-10-25T18:55:52,139 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-10-25T18:55:52,139 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-10-25T18:55:52,140 | ^~~~~~~ 2022-10-25T18:55:52,140 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:52,140 353 | for (j= start; j<=end; j++) 2022-10-25T18:55:52,140 | ^~ 2022-10-25T18:55:52,142 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-10-25T18:55:52,143 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-10-25T18:55:52,143 537 | (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-10-25T18:55:52,143 | ^~ 2022-10-25T18:55:52,143 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-10-25T18:55:52,143 538 | (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-10-25T18:55:52,143 | ^~ 2022-10-25T18:55:52,145 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-10-25T18:55:52,145 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,145 620 | for (i=0; iseq_count; i++) { 2022-10-25T18:55:52,145 | ^ 2022-10-25T18:55:52,148 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:52,148 638 | fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-10-25T18:55:52,148 | ^~ 2022-10-25T18:55:52,148 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:52,148 639 | fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-10-25T18:55:52,149 | ^~ 2022-10-25T18:55:52,149 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:52,149 640 | fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-10-25T18:55:52,149 | ^~ 2022-10-25T18:55:52,149 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-25T18:55:52,149 641 | fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-10-25T18:55:52,149 | ^~ 2022-10-25T18:55:52,150 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,150 651 | for (i=0; iambig_list->count; i++) { 2022-10-25T18:55:52,150 | ^ 2022-10-25T18:55:52,150 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,151 663 | for (i=0; iseq_count; i++) 2022-10-25T18:55:52,151 | ^ 2022-10-25T18:55:52,152 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-10-25T18:55:52,152 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-25T18:55:52,152 727 | for (i=0; iseq_count; i++) { 2022-10-25T18:55:52,153 | ^ 2022-10-25T18:55:52,177 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-10-25T18:55:52,353 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-10-25T18:55:52,370 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpwn63mbb2[/] 2022-10-25T18:55:52,370 [bold magenta]cwd[/]: /tmp/pip-wheel-ni0t1pku/pyhmmer_8fb67faea1fe450abb73e56cca4daa5b 2022-10-25T18:55:52,371 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-10-25T18:55:52,373 ERROR: Failed building wheel for pyhmmer 2022-10-25T18:55:52,376 Failed to build pyhmmer 2022-10-25T18:55:52,377 ERROR: Failed to build one or more wheels 2022-10-25T18:55:52,378 Exception information: 2022-10-25T18:55:52,378 Traceback (most recent call last): 2022-10-25T18:55:52,378 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-10-25T18:55:52,378 status = run_func(*args) 2022-10-25T18:55:52,378 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-10-25T18:55:52,378 return func(self, options, args) 2022-10-25T18:55:52,378 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-10-25T18:55:52,378 raise CommandError("Failed to build one or more wheels") 2022-10-25T18:55:52,378 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-10-25T18:55:52,383 Removed build tracker: '/tmp/pip-build-tracker-kmwdhejo'