2022-10-26T10:01:29,297 Created temporary directory: /tmp/pip-ephem-wheel-cache-_thptic8 2022-10-26T10:01:29,302 Created temporary directory: /tmp/pip-build-tracker-_lxq8fnv 2022-10-26T10:01:29,303 Initialized build tracking at /tmp/pip-build-tracker-_lxq8fnv 2022-10-26T10:01:29,304 Created build tracker: /tmp/pip-build-tracker-_lxq8fnv 2022-10-26T10:01:29,304 Entered build tracker: /tmp/pip-build-tracker-_lxq8fnv 2022-10-26T10:01:29,306 Created temporary directory: /tmp/pip-wheel-22fvjbo1 2022-10-26T10:01:29,314 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-26T10:01:29,320 Created temporary directory: /tmp/pip-ephem-wheel-cache-z7yfr_0y 2022-10-26T10:01:29,377 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-26T10:01:29,385 2 location(s) to search for versions of pystochsim: 2022-10-26T10:01:29,385 * https://pypi.org/simple/pystochsim/ 2022-10-26T10:01:29,385 * https://www.piwheels.org/simple/pystochsim/ 2022-10-26T10:01:29,386 Fetching project page and analyzing links: https://pypi.org/simple/pystochsim/ 2022-10-26T10:01:29,387 Getting page https://pypi.org/simple/pystochsim/ 2022-10-26T10:01:29,391 Found index url https://pypi.org/simple 2022-10-26T10:01:29,622 Fetched page https://pypi.org/simple/pystochsim/ as application/vnd.pypi.simple.v1+json 2022-10-26T10:01:29,626 Found link https://files.pythonhosted.org/packages/08/4f/07ff0c61259abdba9a979cb58c1d52eb991d7ffacf6d323dc56e85cdd3d7/pystochsim-1.0.0.tar.gz (from https://pypi.org/simple/pystochsim/) (requires-python:>=3.6), version: 1.0.0 2022-10-26T10:01:29,628 Found link https://files.pythonhosted.org/packages/a6/5c/7613c6bac1ee52964e761e325353878d5f6ccd739f03b2012eae8c741260/pystochsim-1.1.0.tar.gz (from https://pypi.org/simple/pystochsim/) (requires-python:>=3.6), version: 1.1.0 2022-10-26T10:01:29,629 Fetching project page and analyzing links: https://www.piwheels.org/simple/pystochsim/ 2022-10-26T10:01:29,630 Getting page https://www.piwheels.org/simple/pystochsim/ 2022-10-26T10:01:29,632 Found index url https://www.piwheels.org/simple 2022-10-26T10:01:30,559 Fetched page https://www.piwheels.org/simple/pystochsim/ as text/html 2022-10-26T10:01:30,565 Skipping link: No binaries permitted for pystochsim: https://www.piwheels.org/simple/pystochsim/pystochsim-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=062427fe2a74ec34a7481340aaca1e703a59e91473321a009b31d84876b4fe61 (from https://www.piwheels.org/simple/pystochsim/) (requires-python:>=3.6) 2022-10-26T10:01:30,566 Skipping link: No binaries permitted for pystochsim: https://www.piwheels.org/simple/pystochsim/pystochsim-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=062427fe2a74ec34a7481340aaca1e703a59e91473321a009b31d84876b4fe61 (from https://www.piwheels.org/simple/pystochsim/) (requires-python:>=3.6) 2022-10-26T10:01:30,566 Skipping link: No binaries permitted for pystochsim: https://www.piwheels.org/simple/pystochsim/pystochsim-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=92e9db83bd07e9f3cb3ae24e376554b7c560f25e28717b7e696bead47bcc2f24 (from https://www.piwheels.org/simple/pystochsim/) (requires-python:>=3.6) 2022-10-26T10:01:30,567 Skipping link: No binaries permitted for pystochsim: https://www.piwheels.org/simple/pystochsim/pystochsim-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=92e9db83bd07e9f3cb3ae24e376554b7c560f25e28717b7e696bead47bcc2f24 (from https://www.piwheels.org/simple/pystochsim/) (requires-python:>=3.6) 2022-10-26T10:01:30,567 Skipping link: not a file: https://www.piwheels.org/simple/pystochsim/ 2022-10-26T10:01:30,568 Skipping link: not a file: https://pypi.org/simple/pystochsim/ 2022-10-26T10:01:30,603 Given no hashes to check 1 links for project 'pystochsim': discarding no candidates 2022-10-26T10:01:30,639 Collecting pystochsim==1.0.0 2022-10-26T10:01:30,644 Created temporary directory: /tmp/pip-unpack-fwaov4_j 2022-10-26T10:01:30,970 Downloading pystochsim-1.0.0.tar.gz (1.2 MB) 2022-10-26T10:01:34,092 Added pystochsim==1.0.0 from https://files.pythonhosted.org/packages/08/4f/07ff0c61259abdba9a979cb58c1d52eb991d7ffacf6d323dc56e85cdd3d7/pystochsim-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-_lxq8fnv' 2022-10-26T10:01:34,096 Running setup.py (path:/tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/setup.py) egg_info for package pystochsim 2022-10-26T10:01:34,097 Created temporary directory: /tmp/pip-pip-egg-info-2d7wv4ox 2022-10-26T10:01:34,098 Preparing metadata (setup.py): started 2022-10-26T10:01:34,100 Running command python setup.py egg_info 2022-10-26T10:01:37,094 running egg_info 2022-10-26T10:01:37,102 creating /tmp/pip-pip-egg-info-2d7wv4ox/pystochsim.egg-info 2022-10-26T10:01:37,160 writing /tmp/pip-pip-egg-info-2d7wv4ox/pystochsim.egg-info/PKG-INFO 2022-10-26T10:01:37,167 writing dependency_links to /tmp/pip-pip-egg-info-2d7wv4ox/pystochsim.egg-info/dependency_links.txt 2022-10-26T10:01:37,173 writing top-level names to /tmp/pip-pip-egg-info-2d7wv4ox/pystochsim.egg-info/top_level.txt 2022-10-26T10:01:37,177 writing manifest file '/tmp/pip-pip-egg-info-2d7wv4ox/pystochsim.egg-info/SOURCES.txt' 2022-10-26T10:01:37,291 reading manifest file '/tmp/pip-pip-egg-info-2d7wv4ox/pystochsim.egg-info/SOURCES.txt' 2022-10-26T10:01:37,295 reading manifest template 'MANIFEST.in' 2022-10-26T10:01:37,646 adding license file 'LICENSE' 2022-10-26T10:01:37,697 writing manifest file '/tmp/pip-pip-egg-info-2d7wv4ox/pystochsim.egg-info/SOURCES.txt' 2022-10-26T10:01:37,930 Preparing metadata (setup.py): finished with status 'done' 2022-10-26T10:01:37,941 Source in /tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef has version 1.0.0, which satisfies requirement pystochsim==1.0.0 from https://files.pythonhosted.org/packages/08/4f/07ff0c61259abdba9a979cb58c1d52eb991d7ffacf6d323dc56e85cdd3d7/pystochsim-1.0.0.tar.gz 2022-10-26T10:01:37,943 Removed pystochsim==1.0.0 from https://files.pythonhosted.org/packages/08/4f/07ff0c61259abdba9a979cb58c1d52eb991d7ffacf6d323dc56e85cdd3d7/pystochsim-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-_lxq8fnv' 2022-10-26T10:01:37,957 Created temporary directory: /tmp/pip-unpack-duog5at0 2022-10-26T10:01:37,959 Building wheels for collected packages: pystochsim 2022-10-26T10:01:37,968 Created temporary directory: /tmp/pip-wheel-873e_pew 2022-10-26T10:01:37,969 Building wheel for pystochsim (setup.py): started 2022-10-26T10:01:37,971 Destination directory: /tmp/pip-wheel-873e_pew 2022-10-26T10:01:37,971 Running command python setup.py bdist_wheel 2022-10-26T10:01:41,007 running bdist_wheel 2022-10-26T10:01:41,190 running build 2022-10-26T10:01:41,190 running build_ext 2022-10-26T10:01:41,950 -- The C compiler identification is GNU 8.3.0 2022-10-26T10:01:42,767 -- The CXX compiler identification is GNU 8.3.0 2022-10-26T10:01:42,839 -- Check for working C compiler: /usr/bin/cc 2022-10-26T10:01:43,776 -- Check for working C compiler: /usr/bin/cc -- works 2022-10-26T10:01:43,789 -- Detecting C compiler ABI info 2022-10-26T10:01:44,657 -- Detecting C compiler ABI info - done 2022-10-26T10:01:44,784 -- Detecting C compile features 2022-10-26T10:01:44,789 -- Detecting C compile features - done 2022-10-26T10:01:44,827 -- Check for working CXX compiler: /usr/bin/c++ 2022-10-26T10:01:45,980 -- Check for working CXX compiler: /usr/bin/c++ -- works 2022-10-26T10:01:45,994 -- Detecting CXX compiler ABI info 2022-10-26T10:01:47,133 -- Detecting CXX compiler ABI info - done 2022-10-26T10:01:47,263 -- Detecting CXX compile features 2022-10-26T10:01:47,270 -- Detecting CXX compile features - done 2022-10-26T10:01:47,474 -- Using the multi-header code from /tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/extern/json/include/ 2022-10-26T10:01:47,563 -- pybind11 v2.11.0 dev1 2022-10-26T10:01:47,732 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.7.3", minimum required is "3.6") 2022-10-26T10:01:49,992 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.7m.so 2022-10-26T10:01:50,012 -- Performing Test HAS_FLTO 2022-10-26T10:01:51,431 -- Performing Test HAS_FLTO - Success 2022-10-26T10:01:54,423 -- Found Python: /usr/bin/python3.7 (found version "3.7.3") found components: Interpreter 2022-10-26T10:01:54,462 -- Looking for pthread.h 2022-10-26T10:01:55,407 -- Looking for pthread.h - found 2022-10-26T10:01:55,412 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2022-10-26T10:01:56,359 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed 2022-10-26T10:01:56,363 -- Looking for pthread_create in pthreads 2022-10-26T10:01:57,142 -- Looking for pthread_create in pthreads - not found 2022-10-26T10:01:57,146 -- Looking for pthread_create in pthread 2022-10-26T10:01:58,039 -- Looking for pthread_create in pthread - found 2022-10-26T10:01:58,051 -- Found Threads: TRUE 2022-10-26T10:01:58,128 -- Configuring done 2022-10-26T10:01:58,672 -- Generating done 2022-10-26T10:01:58,742 CMake Warning: 2022-10-26T10:01:58,743 Manually-specified variables were not used by the project: 2022-10-26T10:01:58,744 EXAMPLE_VERSION_INFO 2022-10-26T10:01:58,754 -- Build files have been written to: /tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/build/temp.linux-armv7l-cpython-37/pystochsim 2022-10-26T10:01:59,547 Scanning dependencies of target ssm 2022-10-26T10:01:59,702 [ 2%] Building CXX object source/ssm/CMakeFiles/ssm.dir/factory.cpp.o 2022-10-26T10:01:59,823 In file included from /tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/source/ssm/factory.h:3, 2022-10-26T10:01:59,824 from /tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/source/ssm/factory.cpp:1: 2022-10-26T10:01:59,824 /tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/source/ssm/reaction.h:5:10: fatal error: span: No such file or directory 2022-10-26T10:01:59,824 #include 2022-10-26T10:01:59,825 ^~~~~~ 2022-10-26T10:01:59,825 compilation terminated. 2022-10-26T10:01:59,834 make[2]: *** [source/ssm/CMakeFiles/ssm.dir/build.make:63: source/ssm/CMakeFiles/ssm.dir/factory.cpp.o] Error 1 2022-10-26T10:01:59,835 make[1]: *** [CMakeFiles/Makefile2:404: source/ssm/CMakeFiles/ssm.dir/all] Error 2 2022-10-26T10:01:59,837 make: *** [Makefile:95: all] Error 2 2022-10-26T10:01:59,849 Traceback (most recent call last): 2022-10-26T10:01:59,850 File "", line 36, in 2022-10-26T10:01:59,850 File "", line 34, in 2022-10-26T10:01:59,851 File "/tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/setup.py", line 137, in 2022-10-26T10:01:59,852 python_requires=">=3.6", 2022-10-26T10:01:59,853 File "/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py", line 87, in setup 2022-10-26T10:01:59,854 return distutils.core.setup(**attrs) 2022-10-26T10:01:59,854 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/core.py", line 185, in setup 2022-10-26T10:01:59,855 return run_commands(dist) 2022-10-26T10:01:59,856 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands 2022-10-26T10:01:59,856 dist.run_commands() 2022-10-26T10:01:59,857 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py", line 968, in run_commands 2022-10-26T10:01:59,859 self.run_command(cmd) 2022-10-26T10:01:59,860 File "/usr/local/lib/python3.7/dist-packages/setuptools/dist.py", line 1217, in run_command 2022-10-26T10:01:59,863 super().run_command(command) 2022-10-26T10:01:59,863 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py", line 987, in run_command 2022-10-26T10:01:59,865 cmd_obj.run() 2022-10-26T10:01:59,866 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 188, in run 2022-10-26T10:01:59,867 self.run_command('build') 2022-10-26T10:01:59,867 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py", line 319, in run_command 2022-10-26T10:01:59,868 self.distribution.run_command(command) 2022-10-26T10:01:59,869 File "/usr/local/lib/python3.7/dist-packages/setuptools/dist.py", line 1217, in run_command 2022-10-26T10:01:59,872 super().run_command(command) 2022-10-26T10:01:59,872 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py", line 987, in run_command 2022-10-26T10:01:59,875 cmd_obj.run() 2022-10-26T10:01:59,875 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/command/build.py", line 132, in run 2022-10-26T10:01:59,876 self.run_command(cmd_name) 2022-10-26T10:01:59,876 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py", line 319, in run_command 2022-10-26T10:01:59,877 self.distribution.run_command(command) 2022-10-26T10:01:59,878 File "/usr/local/lib/python3.7/dist-packages/setuptools/dist.py", line 1217, in run_command 2022-10-26T10:01:59,881 super().run_command(command) 2022-10-26T10:01:59,881 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py", line 987, in run_command 2022-10-26T10:01:59,884 cmd_obj.run() 2022-10-26T10:01:59,884 File "/usr/local/lib/python3.7/dist-packages/setuptools/command/build_ext.py", line 84, in run 2022-10-26T10:01:59,900 _build_ext.run(self) 2022-10-26T10:01:59,901 File "/usr/local/lib/python3.7/dist-packages/Cython/Distutils/old_build_ext.py", line 186, in run 2022-10-26T10:01:59,909 _build_ext.build_ext.run(self) 2022-10-26T10:01:59,909 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/command/build_ext.py", line 346, in run 2022-10-26T10:01:59,911 self.build_extensions() 2022-10-26T10:01:59,911 File "/usr/local/lib/python3.7/dist-packages/Cython/Distutils/old_build_ext.py", line 195, in build_extensions 2022-10-26T10:01:59,912 _build_ext.build_ext.build_extensions(self) 2022-10-26T10:01:59,912 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/command/build_ext.py", line 466, in build_extensions 2022-10-26T10:01:59,914 self._build_extensions_serial() 2022-10-26T10:01:59,914 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/command/build_ext.py", line 492, in _build_extensions_serial 2022-10-26T10:01:59,916 self.build_extension(ext) 2022-10-26T10:01:59,916 File "/tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/setup.py", line 118, in build_extension 2022-10-26T10:01:59,917 subprocess.check_call(["cmake", "--build", "."] + build_args, cwd=build_temp) 2022-10-26T10:01:59,917 File "/usr/lib/python3.7/subprocess.py", line 347, in check_call 2022-10-26T10:01:59,919 raise CalledProcessError(retcode, cmd) 2022-10-26T10:01:59,919 subprocess.CalledProcessError: Command '['cmake', '--build', '.']' returned non-zero exit status 2. 2022-10-26T10:02:00,184 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2022-10-26T10:02:00,230 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2022-10-26T10:02:00,230 exec(compile('"'"''"'"''"'"' 2022-10-26T10:02:00,230 # This is -- a caller that pip uses to run setup.py 2022-10-26T10:02:00,230 # 2022-10-26T10:02:00,230 # - It imports setuptools before invoking setup.py, to enable projects that directly 2022-10-26T10:02:00,230 # import from `distutils.core` to work with newer packaging standards. 2022-10-26T10:02:00,230 # - It provides a clear error message when setuptools is not installed. 2022-10-26T10:02:00,230 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2022-10-26T10:02:00,230 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2022-10-26T10:02:00,230 # manifest_maker: standard file '"'"'-c'"'"' not found". 2022-10-26T10:02:00,230 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2022-10-26T10:02:00,230 import os, sys, tokenize 2022-10-26T10:02:00,230 2022-10-26T10:02:00,230 try: 2022-10-26T10:02:00,230 import setuptools 2022-10-26T10:02:00,230 except ImportError as error: 2022-10-26T10:02:00,230 print( 2022-10-26T10:02:00,230 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2022-10-26T10:02:00,230 "the build environment.", 2022-10-26T10:02:00,230 file=sys.stderr, 2022-10-26T10:02:00,230 ) 2022-10-26T10:02:00,230 sys.exit(1) 2022-10-26T10:02:00,230 2022-10-26T10:02:00,230 __file__ = %r 2022-10-26T10:02:00,230 sys.argv[0] = __file__ 2022-10-26T10:02:00,230 2022-10-26T10:02:00,230 if os.path.exists(__file__): 2022-10-26T10:02:00,230 filename = __file__ 2022-10-26T10:02:00,230 with tokenize.open(__file__) as f: 2022-10-26T10:02:00,230 setup_py_code = f.read() 2022-10-26T10:02:00,230 else: 2022-10-26T10:02:00,230 filename = "" 2022-10-26T10:02:00,230 setup_py_code = "from setuptools import setup; setup()" 2022-10-26T10:02:00,230 2022-10-26T10:02:00,230 exec(compile(setup_py_code, filename, "exec")) 2022-10-26T10:02:00,230 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-873e_pew[/] 2022-10-26T10:02:00,231 [bold magenta]cwd[/]: /tmp/pip-wheel-22fvjbo1/pystochsim_75665adba3ee4e0f9b89a00618e378ef/ 2022-10-26T10:02:00,232 Building wheel for pystochsim (setup.py): finished with status 'error' 2022-10-26T10:02:00,234 ERROR: Failed building wheel for pystochsim 2022-10-26T10:02:00,237 Running setup.py clean for pystochsim 2022-10-26T10:02:00,239 Running command python setup.py clean 2022-10-26T10:02:03,280 running clean 2022-10-26T10:02:03,392 removing 'build/temp.linux-armv7l-cpython-37' (and everything under it) 2022-10-26T10:02:03,569 removing 'build/lib.linux-armv7l-cpython-37' (and everything under it) 2022-10-26T10:02:03,571 'build/bdist.linux-armv7l' does not exist -- can't clean it 2022-10-26T10:02:03,573 'build/scripts-3.7' does not exist -- can't clean it 2022-10-26T10:02:03,574 removing 'build' 2022-10-26T10:02:03,808 Failed to build pystochsim 2022-10-26T10:02:03,812 ERROR: Failed to build one or more wheels 2022-10-26T10:02:03,816 Exception information: 2022-10-26T10:02:03,816 Traceback (most recent call last): 2022-10-26T10:02:03,816 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-10-26T10:02:03,816 status = run_func(*args) 2022-10-26T10:02:03,816 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-10-26T10:02:03,816 return func(self, options, args) 2022-10-26T10:02:03,816 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-10-26T10:02:03,816 raise CommandError("Failed to build one or more wheels") 2022-10-26T10:02:03,816 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-10-26T10:02:03,823 Removed build tracker: '/tmp/pip-build-tracker-_lxq8fnv'