2022-10-26T13:16:32,833 Created temporary directory: /tmp/pip-ephem-wheel-cache-j3sehzos 2022-10-26T13:16:32,838 Created temporary directory: /tmp/pip-build-tracker-x5rwek7v 2022-10-26T13:16:32,839 Initialized build tracking at /tmp/pip-build-tracker-x5rwek7v 2022-10-26T13:16:32,839 Created build tracker: /tmp/pip-build-tracker-x5rwek7v 2022-10-26T13:16:32,839 Entered build tracker: /tmp/pip-build-tracker-x5rwek7v 2022-10-26T13:16:32,841 Created temporary directory: /tmp/pip-wheel-xl3h64nt 2022-10-26T13:16:32,849 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-26T13:16:32,854 Created temporary directory: /tmp/pip-ephem-wheel-cache-j96hviae 2022-10-26T13:16:32,908 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-26T13:16:32,916 2 location(s) to search for versions of pystochsim: 2022-10-26T13:16:32,916 * https://pypi.org/simple/pystochsim/ 2022-10-26T13:16:32,916 * https://www.piwheels.org/simple/pystochsim/ 2022-10-26T13:16:32,918 Fetching project page and analyzing links: https://pypi.org/simple/pystochsim/ 2022-10-26T13:16:32,919 Getting page https://pypi.org/simple/pystochsim/ 2022-10-26T13:16:32,922 Found index url https://pypi.org/simple 2022-10-26T13:16:33,034 Fetched page https://pypi.org/simple/pystochsim/ as application/vnd.pypi.simple.v1+json 2022-10-26T13:16:33,038 Found link https://files.pythonhosted.org/packages/08/4f/07ff0c61259abdba9a979cb58c1d52eb991d7ffacf6d323dc56e85cdd3d7/pystochsim-1.0.0.tar.gz (from https://pypi.org/simple/pystochsim/) (requires-python:>=3.6), version: 1.0.0 2022-10-26T13:16:33,040 Found link https://files.pythonhosted.org/packages/a6/5c/7613c6bac1ee52964e761e325353878d5f6ccd739f03b2012eae8c741260/pystochsim-1.1.0.tar.gz (from https://pypi.org/simple/pystochsim/) (requires-python:>=3.6), version: 1.1.0 2022-10-26T13:16:33,041 Fetching project page and analyzing links: https://www.piwheels.org/simple/pystochsim/ 2022-10-26T13:16:33,042 Getting page https://www.piwheels.org/simple/pystochsim/ 2022-10-26T13:16:33,044 Found index url https://www.piwheels.org/simple 2022-10-26T13:16:38,632 Fetched page https://www.piwheels.org/simple/pystochsim/ as text/html 2022-10-26T13:16:38,638 Skipping link: No binaries permitted for pystochsim: https://www.piwheels.org/simple/pystochsim/pystochsim-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=062427fe2a74ec34a7481340aaca1e703a59e91473321a009b31d84876b4fe61 (from https://www.piwheels.org/simple/pystochsim/) (requires-python:>=3.6) 2022-10-26T13:16:38,639 Skipping link: No binaries permitted for pystochsim: https://www.piwheels.org/simple/pystochsim/pystochsim-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=062427fe2a74ec34a7481340aaca1e703a59e91473321a009b31d84876b4fe61 (from https://www.piwheels.org/simple/pystochsim/) (requires-python:>=3.6) 2022-10-26T13:16:38,640 Skipping link: No binaries permitted for pystochsim: https://www.piwheels.org/simple/pystochsim/pystochsim-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=92e9db83bd07e9f3cb3ae24e376554b7c560f25e28717b7e696bead47bcc2f24 (from https://www.piwheels.org/simple/pystochsim/) (requires-python:>=3.6) 2022-10-26T13:16:38,640 Skipping link: No binaries permitted for pystochsim: https://www.piwheels.org/simple/pystochsim/pystochsim-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=92e9db83bd07e9f3cb3ae24e376554b7c560f25e28717b7e696bead47bcc2f24 (from https://www.piwheels.org/simple/pystochsim/) (requires-python:>=3.6) 2022-10-26T13:16:38,641 Skipping link: not a file: https://www.piwheels.org/simple/pystochsim/ 2022-10-26T13:16:38,642 Skipping link: not a file: https://pypi.org/simple/pystochsim/ 2022-10-26T13:16:38,676 Given no hashes to check 1 links for project 'pystochsim': discarding no candidates 2022-10-26T13:16:38,711 Collecting pystochsim==1.1.0 2022-10-26T13:16:38,716 Created temporary directory: /tmp/pip-unpack-lzcons9i 2022-10-26T13:16:39,367 Downloading pystochsim-1.1.0.tar.gz (1.2 MB) 2022-10-26T13:16:42,520 Added pystochsim==1.1.0 from https://files.pythonhosted.org/packages/a6/5c/7613c6bac1ee52964e761e325353878d5f6ccd739f03b2012eae8c741260/pystochsim-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-x5rwek7v' 2022-10-26T13:16:42,523 Running setup.py (path:/tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/setup.py) egg_info for package pystochsim 2022-10-26T13:16:42,525 Created temporary directory: /tmp/pip-pip-egg-info-s1tdnaky 2022-10-26T13:16:42,525 Preparing metadata (setup.py): started 2022-10-26T13:16:42,528 Running command python setup.py egg_info 2022-10-26T13:16:45,597 running egg_info 2022-10-26T13:16:45,605 creating /tmp/pip-pip-egg-info-s1tdnaky/pystochsim.egg-info 2022-10-26T13:16:45,660 writing /tmp/pip-pip-egg-info-s1tdnaky/pystochsim.egg-info/PKG-INFO 2022-10-26T13:16:45,883 writing dependency_links to /tmp/pip-pip-egg-info-s1tdnaky/pystochsim.egg-info/dependency_links.txt 2022-10-26T13:16:45,890 writing top-level names to /tmp/pip-pip-egg-info-s1tdnaky/pystochsim.egg-info/top_level.txt 2022-10-26T13:16:45,893 writing manifest file '/tmp/pip-pip-egg-info-s1tdnaky/pystochsim.egg-info/SOURCES.txt' 2022-10-26T13:16:46,008 reading manifest file '/tmp/pip-pip-egg-info-s1tdnaky/pystochsim.egg-info/SOURCES.txt' 2022-10-26T13:16:46,012 reading manifest template 'MANIFEST.in' 2022-10-26T13:16:46,352 adding license file 'LICENSE' 2022-10-26T13:16:46,402 writing manifest file '/tmp/pip-pip-egg-info-s1tdnaky/pystochsim.egg-info/SOURCES.txt' 2022-10-26T13:16:46,637 Preparing metadata (setup.py): finished with status 'done' 2022-10-26T13:16:46,648 Source in /tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e has version 1.1.0, which satisfies requirement pystochsim==1.1.0 from https://files.pythonhosted.org/packages/a6/5c/7613c6bac1ee52964e761e325353878d5f6ccd739f03b2012eae8c741260/pystochsim-1.1.0.tar.gz 2022-10-26T13:16:46,650 Removed pystochsim==1.1.0 from https://files.pythonhosted.org/packages/a6/5c/7613c6bac1ee52964e761e325353878d5f6ccd739f03b2012eae8c741260/pystochsim-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-x5rwek7v' 2022-10-26T13:16:46,664 Created temporary directory: /tmp/pip-unpack-1hhtdnug 2022-10-26T13:16:46,665 Building wheels for collected packages: pystochsim 2022-10-26T13:16:46,676 Created temporary directory: /tmp/pip-wheel-id2vmsq_ 2022-10-26T13:16:46,677 Building wheel for pystochsim (setup.py): started 2022-10-26T13:16:46,679 Destination directory: /tmp/pip-wheel-id2vmsq_ 2022-10-26T13:16:46,679 Running command python setup.py bdist_wheel 2022-10-26T13:16:49,670 running bdist_wheel 2022-10-26T13:16:49,838 running build 2022-10-26T13:16:49,838 running build_ext 2022-10-26T13:16:50,609 -- The C compiler identification is GNU 8.3.0 2022-10-26T13:16:51,422 -- The CXX compiler identification is GNU 8.3.0 2022-10-26T13:16:51,492 -- Check for working C compiler: /usr/bin/cc 2022-10-26T13:16:52,379 -- Check for working C compiler: /usr/bin/cc -- works 2022-10-26T13:16:52,391 -- Detecting C compiler ABI info 2022-10-26T13:16:53,278 -- Detecting C compiler ABI info - done 2022-10-26T13:16:53,405 -- Detecting C compile features 2022-10-26T13:16:53,410 -- Detecting C compile features - done 2022-10-26T13:16:53,451 -- Check for working CXX compiler: /usr/bin/c++ 2022-10-26T13:16:54,667 -- Check for working CXX compiler: /usr/bin/c++ -- works 2022-10-26T13:16:54,680 -- Detecting CXX compiler ABI info 2022-10-26T13:16:55,894 -- Detecting CXX compiler ABI info - done 2022-10-26T13:16:56,024 -- Detecting CXX compile features 2022-10-26T13:16:56,031 -- Detecting CXX compile features - done 2022-10-26T13:16:56,228 -- Using the multi-header code from /tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/extern/json/include/ 2022-10-26T13:16:56,340 -- pybind11 v2.11.0 dev1 2022-10-26T13:16:56,509 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.7.3", minimum required is "3.6") 2022-10-26T13:16:58,766 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.7m.so 2022-10-26T13:16:58,786 -- Performing Test HAS_FLTO 2022-10-26T13:17:00,248 -- Performing Test HAS_FLTO - Success 2022-10-26T13:17:03,396 -- Found Python: /usr/bin/python3.7 (found version "3.7.3") found components: Interpreter 2022-10-26T13:17:03,442 -- Looking for pthread.h 2022-10-26T13:17:04,414 -- Looking for pthread.h - found 2022-10-26T13:17:04,419 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2022-10-26T13:17:05,365 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed 2022-10-26T13:17:05,369 -- Looking for pthread_create in pthreads 2022-10-26T13:17:06,113 -- Looking for pthread_create in pthreads - not found 2022-10-26T13:17:06,117 -- Looking for pthread_create in pthread 2022-10-26T13:17:07,089 -- Looking for pthread_create in pthread - found 2022-10-26T13:17:07,101 -- Found Threads: TRUE 2022-10-26T13:17:07,162 -- Configuring done 2022-10-26T13:17:07,695 -- Generating done 2022-10-26T13:17:07,760 CMake Warning: 2022-10-26T13:17:07,760 Manually-specified variables were not used by the project: 2022-10-26T13:17:07,761 EXAMPLE_VERSION_INFO 2022-10-26T13:17:07,772 -- Build files have been written to: /tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/build/temp.linux-armv7l-cpython-37/pystochsim 2022-10-26T13:17:08,522 Scanning dependencies of target stochsim 2022-10-26T13:17:08,677 [ 2%] Building CXX object source/stochsim/CMakeFiles/stochsim.dir/factory.cpp.o 2022-10-26T13:17:08,798 In file included from /tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/source/stochsim/factory.h:3, 2022-10-26T13:17:08,798 from /tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/source/stochsim/factory.cpp:1: 2022-10-26T13:17:08,799 /tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/source/stochsim/reaction.h:5:10: fatal error: span: No such file or directory 2022-10-26T13:17:08,799 #include 2022-10-26T13:17:08,799 ^~~~~~ 2022-10-26T13:17:08,800 compilation terminated. 2022-10-26T13:17:08,809 make[2]: *** [source/stochsim/CMakeFiles/stochsim.dir/build.make:63: source/stochsim/CMakeFiles/stochsim.dir/factory.cpp.o] Error 1 2022-10-26T13:17:08,810 make[1]: *** [CMakeFiles/Makefile2:404: source/stochsim/CMakeFiles/stochsim.dir/all] Error 2 2022-10-26T13:17:08,812 make: *** [Makefile:95: all] Error 2 2022-10-26T13:17:08,824 Traceback (most recent call last): 2022-10-26T13:17:08,824 File "", line 36, in 2022-10-26T13:17:08,825 File "", line 34, in 2022-10-26T13:17:08,825 File "/tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/setup.py", line 139, in 2022-10-26T13:17:08,827 python_requires=">=3.6", 2022-10-26T13:17:08,827 File "/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py", line 87, in setup 2022-10-26T13:17:08,828 return distutils.core.setup(**attrs) 2022-10-26T13:17:08,828 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/core.py", line 185, in setup 2022-10-26T13:17:08,829 return run_commands(dist) 2022-10-26T13:17:08,829 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands 2022-10-26T13:17:08,830 dist.run_commands() 2022-10-26T13:17:08,831 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py", line 968, in run_commands 2022-10-26T13:17:08,834 self.run_command(cmd) 2022-10-26T13:17:08,834 File "/usr/local/lib/python3.7/dist-packages/setuptools/dist.py", line 1217, in run_command 2022-10-26T13:17:08,838 super().run_command(command) 2022-10-26T13:17:08,838 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py", line 987, in run_command 2022-10-26T13:17:08,841 cmd_obj.run() 2022-10-26T13:17:08,842 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 188, in run 2022-10-26T13:17:08,844 self.run_command('build') 2022-10-26T13:17:08,845 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py", line 319, in run_command 2022-10-26T13:17:08,847 self.distribution.run_command(command) 2022-10-26T13:17:08,848 File "/usr/local/lib/python3.7/dist-packages/setuptools/dist.py", line 1217, in run_command 2022-10-26T13:17:08,852 super().run_command(command) 2022-10-26T13:17:08,853 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py", line 987, in run_command 2022-10-26T13:17:08,856 cmd_obj.run() 2022-10-26T13:17:08,857 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/command/build.py", line 132, in run 2022-10-26T13:17:08,859 self.run_command(cmd_name) 2022-10-26T13:17:08,860 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py", line 319, in run_command 2022-10-26T13:17:08,862 self.distribution.run_command(command) 2022-10-26T13:17:08,862 File "/usr/local/lib/python3.7/dist-packages/setuptools/dist.py", line 1217, in run_command 2022-10-26T13:17:08,866 super().run_command(command) 2022-10-26T13:17:08,867 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py", line 987, in run_command 2022-10-26T13:17:08,871 cmd_obj.run() 2022-10-26T13:17:08,872 File "/usr/local/lib/python3.7/dist-packages/setuptools/command/build_ext.py", line 84, in run 2022-10-26T13:17:08,873 _build_ext.run(self) 2022-10-26T13:17:08,874 File "/usr/local/lib/python3.7/dist-packages/Cython/Distutils/old_build_ext.py", line 186, in run 2022-10-26T13:17:08,876 _build_ext.build_ext.run(self) 2022-10-26T13:17:08,877 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/command/build_ext.py", line 346, in run 2022-10-26T13:17:08,879 self.build_extensions() 2022-10-26T13:17:08,880 File "/usr/local/lib/python3.7/dist-packages/Cython/Distutils/old_build_ext.py", line 195, in build_extensions 2022-10-26T13:17:08,882 _build_ext.build_ext.build_extensions(self) 2022-10-26T13:17:08,882 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/command/build_ext.py", line 466, in build_extensions 2022-10-26T13:17:08,885 self._build_extensions_serial() 2022-10-26T13:17:08,885 File "/usr/local/lib/python3.7/dist-packages/setuptools/_distutils/command/build_ext.py", line 492, in _build_extensions_serial 2022-10-26T13:17:08,888 self.build_extension(ext) 2022-10-26T13:17:08,889 File "/tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/setup.py", line 118, in build_extension 2022-10-26T13:17:08,890 subprocess.check_call(["cmake", "--build", "."] + build_args, cwd=build_temp) 2022-10-26T13:17:08,891 File "/usr/lib/python3.7/subprocess.py", line 347, in check_call 2022-10-26T13:17:08,893 raise CalledProcessError(retcode, cmd) 2022-10-26T13:17:08,895 subprocess.CalledProcessError: Command '['cmake', '--build', '.']' returned non-zero exit status 2. 2022-10-26T13:17:09,155 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2022-10-26T13:17:09,201 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2022-10-26T13:17:09,201 exec(compile('"'"''"'"''"'"' 2022-10-26T13:17:09,201 # This is -- a caller that pip uses to run setup.py 2022-10-26T13:17:09,201 # 2022-10-26T13:17:09,201 # - It imports setuptools before invoking setup.py, to enable projects that directly 2022-10-26T13:17:09,201 # import from `distutils.core` to work with newer packaging standards. 2022-10-26T13:17:09,201 # - It provides a clear error message when setuptools is not installed. 2022-10-26T13:17:09,201 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2022-10-26T13:17:09,201 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2022-10-26T13:17:09,201 # manifest_maker: standard file '"'"'-c'"'"' not found". 2022-10-26T13:17:09,201 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2022-10-26T13:17:09,201 import os, sys, tokenize 2022-10-26T13:17:09,201 2022-10-26T13:17:09,201 try: 2022-10-26T13:17:09,201 import setuptools 2022-10-26T13:17:09,201 except ImportError as error: 2022-10-26T13:17:09,201 print( 2022-10-26T13:17:09,201 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2022-10-26T13:17:09,201 "the build environment.", 2022-10-26T13:17:09,201 file=sys.stderr, 2022-10-26T13:17:09,201 ) 2022-10-26T13:17:09,201 sys.exit(1) 2022-10-26T13:17:09,201 2022-10-26T13:17:09,201 __file__ = %r 2022-10-26T13:17:09,201 sys.argv[0] = __file__ 2022-10-26T13:17:09,201 2022-10-26T13:17:09,201 if os.path.exists(__file__): 2022-10-26T13:17:09,201 filename = __file__ 2022-10-26T13:17:09,201 with tokenize.open(__file__) as f: 2022-10-26T13:17:09,201 setup_py_code = f.read() 2022-10-26T13:17:09,201 else: 2022-10-26T13:17:09,201 filename = "" 2022-10-26T13:17:09,201 setup_py_code = "from setuptools import setup; setup()" 2022-10-26T13:17:09,201 2022-10-26T13:17:09,201 exec(compile(setup_py_code, filename, "exec")) 2022-10-26T13:17:09,201 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-id2vmsq_[/] 2022-10-26T13:17:09,202 [bold magenta]cwd[/]: /tmp/pip-wheel-xl3h64nt/pystochsim_15de9197cc1b40c18d7cd2eee3b7b31e/ 2022-10-26T13:17:09,203 Building wheel for pystochsim (setup.py): finished with status 'error' 2022-10-26T13:17:09,205 ERROR: Failed building wheel for pystochsim 2022-10-26T13:17:09,208 Running setup.py clean for pystochsim 2022-10-26T13:17:09,210 Running command python setup.py clean 2022-10-26T13:17:12,392 running clean 2022-10-26T13:17:12,505 removing 'build/temp.linux-armv7l-cpython-37' (and everything under it) 2022-10-26T13:17:12,725 removing 'build/lib.linux-armv7l-cpython-37' (and everything under it) 2022-10-26T13:17:12,728 'build/bdist.linux-armv7l' does not exist -- can't clean it 2022-10-26T13:17:12,729 'build/scripts-3.7' does not exist -- can't clean it 2022-10-26T13:17:12,729 removing 'build' 2022-10-26T13:17:12,963 Failed to build pystochsim 2022-10-26T13:17:12,967 ERROR: Failed to build one or more wheels 2022-10-26T13:17:12,971 Exception information: 2022-10-26T13:17:12,971 Traceback (most recent call last): 2022-10-26T13:17:12,971 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-10-26T13:17:12,971 status = run_func(*args) 2022-10-26T13:17:12,971 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-10-26T13:17:12,971 return func(self, options, args) 2022-10-26T13:17:12,971 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-10-26T13:17:12,971 raise CommandError("Failed to build one or more wheels") 2022-10-26T13:17:12,971 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-10-26T13:17:12,977 Removed build tracker: '/tmp/pip-build-tracker-x5rwek7v'