2022-10-26T16:58:45,558 Created temporary directory: /tmp/pip-ephem-wheel-cache-6bpmdcr4 2022-10-26T16:58:45,564 Created temporary directory: /tmp/pip-build-tracker-0hj10u_9 2022-10-26T16:58:45,565 Initialized build tracking at /tmp/pip-build-tracker-0hj10u_9 2022-10-26T16:58:45,566 Created build tracker: /tmp/pip-build-tracker-0hj10u_9 2022-10-26T16:58:45,567 Entered build tracker: /tmp/pip-build-tracker-0hj10u_9 2022-10-26T16:58:45,568 Created temporary directory: /tmp/pip-wheel-13nbf7_m 2022-10-26T16:58:45,579 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-26T16:58:45,586 Created temporary directory: /tmp/pip-ephem-wheel-cache-iy730q5d 2022-10-26T16:58:45,659 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-26T16:58:45,668 2 location(s) to search for versions of whatshap: 2022-10-26T16:58:45,668 * https://pypi.org/simple/whatshap/ 2022-10-26T16:58:45,668 * https://www.piwheels.org/simple/whatshap/ 2022-10-26T16:58:45,669 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/ 2022-10-26T16:58:45,671 Getting page https://pypi.org/simple/whatshap/ 2022-10-26T16:58:45,677 Found index url https://pypi.org/simple 2022-10-26T16:58:45,828 Fetched page https://pypi.org/simple/whatshap/ as application/vnd.pypi.simple.v1+json 2022-10-26T16:58:45,868 Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.9 2022-10-26T16:58:45,869 Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.10 2022-10-26T16:58:45,870 Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.11 2022-10-26T16:58:45,872 Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.12 2022-10-26T16:58:45,873 Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.13 2022-10-26T16:58:45,874 Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14 2022-10-26T16:58:45,875 Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14.1 2022-10-26T16:58:45,876 Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.15 2022-10-26T16:58:45,877 Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.16 2022-10-26T16:58:45,879 Found link 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(from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2022-10-26T16:58:45,883 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2022-10-26T16:58:45,885 Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18 2022-10-26T16:58:45,886 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,887 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,888 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,890 Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0 2022-10-26T16:58:45,891 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,892 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,893 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,894 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,896 Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1 2022-10-26T16:58:45,897 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ce/5e/0c32569323ea5e7c036cd9344aa669d92e4a30bbcd4a00dda5483dad67a4/whatshap-1.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,898 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c0/b0/0055bf0099361e24f02851b3df68d75e1165a7e13d8b6c4a5bbf1215f924/whatshap-1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,899 Skipping link: No binaries permitted for whatshap: 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https://files.pythonhosted.org/packages/19/36/1423d4adb6f4d7e58f5fdf8c59aaa8b5cec9d73bb5b2450f17f4089e8438/whatshap-1.2.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,904 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/9c/52ce1b726a9b98f628c468b30877edc720c6c8022ae0d13fee6088f894b6/whatshap-1.2.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,905 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/22/c1/d7295d4b3732dc286990b85348401b3bf932bdcb196162f14100472683f3/whatshap-1.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,906 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ff/36/181d416f2c1557879d2647e73964bd0d5d2fd3b79376ec3463435d2363ba/whatshap-1.2.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,908 Found link https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2.1 2022-10-26T16:58:45,909 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/34/c8/7365412dc082fc9b1a0415cde547086f44e0196148ec60ffdd49afc8ecf5/whatshap-1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,910 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/76/52/dca5eac4abe3642ccf23b7dbbf4283589e4065c13f5bd9240e84c3227b4e/whatshap-1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,911 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/08/df/825622346a1833f3b1fc5b89f613b711eb1003cb2a04986ad3016b22bae3/whatshap-1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,912 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/36/4a/c1dc0eb7ebde0b5e5ad75d202f1c994399ca25bab7a31fe56da18185865f/whatshap-1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2022-10-26T16:58:45,914 Found link https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.3 2022-10-26T16:58:45,915 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/60/13/79e33b73a1b737584ad7e23c662a1b621c417813d0d8d81936fe0fe6608f/whatshap-1.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2022-10-26T16:58:45,916 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/5c/c5/96fe2f18f74aee649db37a25a583d01219c01dfae7b33af7df36f5eee414/whatshap-1.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2022-10-26T16:58:45,917 Skipping link: No binaries permitted for whatshap: 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https://files.pythonhosted.org/packages/3f/86/778bbef5c06bdf48c738fdcd64c0a947398d78a168d1dfc949fc7665afa2/whatshap-1.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2022-10-26T16:58:45,928 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/9d/60/749fe7dcbb28f21abc3190a171443c8f78d7a20a1a1dfac592966fb55dc4/whatshap-1.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2022-10-26T16:58:45,929 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/cd/76/28f1ce30b1cf0a26eae2a508d057b78425595104780955b36e938ac7fcbe/whatshap-1.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2022-10-26T16:58:45,931 Found link https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.6 2022-10-26T16:58:45,932 Fetching project page and analyzing links: https://www.piwheels.org/simple/whatshap/ 2022-10-26T16:58:45,933 Getting page https://www.piwheels.org/simple/whatshap/ 2022-10-26T16:58:45,937 Found index url https://www.piwheels.org/simple 2022-10-26T16:58:46,209 Fetched page https://www.piwheels.org/simple/whatshap/ as text/html 2022-10-26T16:58:46,258 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv7l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-10-26T16:58:46,259 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv6l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-10-26T16:58:46,260 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv6l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-10-26T16:58:46,261 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv7l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2022-10-26T16:58:46,262 Skipping link: No binaries permitted for whatshap: 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https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,269 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv6l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,270 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv7l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,271 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv6l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,272 Skipping link: No binaries permitted for whatshap: 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https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,275 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv6l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,276 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv7l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,277 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv7l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,278 Skipping link: No binaries permitted for whatshap: 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(from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,281 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,282 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv6l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,283 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv7l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,284 Skipping link: No binaries permitted for whatshap: 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https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,300 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv7l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,301 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv6l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2022-10-26T16:58:46,302 Skipping link: not a file: https://www.piwheels.org/simple/whatshap/ 2022-10-26T16:58:46,303 Skipping link: not a file: https://pypi.org/simple/whatshap/ 2022-10-26T16:58:46,357 Given no hashes to check 1 links for project 'whatshap': discarding no candidates 2022-10-26T16:58:46,394 Collecting whatshap==1.6 2022-10-26T16:58:46,400 Created temporary directory: /tmp/pip-unpack-trvess3m 2022-10-26T16:58:46,883 Downloading whatshap-1.6.tar.gz (5.2 MB) 2022-10-26T16:58:50,615 Added whatshap==1.6 from https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz to build tracker '/tmp/pip-build-tracker-0hj10u_9' 2022-10-26T16:58:50,627 Created temporary directory: /tmp/pip-build-env-zjnfufw6 2022-10-26T16:58:50,639 Installing build dependencies: started 2022-10-26T16:58:50,641 Running command pip subprocess to install build dependencies 2022-10-26T16:58:53,306 Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2022-10-26T16:58:54,062 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-26T16:58:54,115 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-26T16:58:57,964 Collecting setuptools>=43 2022-10-26T16:58:58,230 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB) 2022-10-26T16:58:59,140 Collecting setuptools_scm 2022-10-26T16:58:59,175 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB) 2022-10-26T16:59:02,209 Collecting cython~=0.29.20 2022-10-26T16:59:02,688 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2022-10-26T16:59:03,869 Collecting importlib-metadata 2022-10-26T16:59:03,906 Using cached https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-5.0.0-py3-none-any.whl (21 kB) 2022-10-26T16:59:04,157 Collecting tomli>=1.0.0 2022-10-26T16:59:04,188 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2022-10-26T16:59:04,401 Collecting typing-extensions 2022-10-26T16:59:04,436 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.4.0-py3-none-any.whl (26 kB) 2022-10-26T16:59:04,824 Collecting packaging>=20.0 2022-10-26T16:59:04,859 Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB) 2022-10-26T16:59:05,508 Collecting pyparsing!=3.0.5,>=2.0.2 2022-10-26T16:59:05,566 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB) 2022-10-26T16:59:06,191 Collecting zipp>=0.5 2022-10-26T16:59:06,222 Using cached https://www.piwheels.org/simple/zipp/zipp-3.10.0-py3-none-any.whl (6.2 kB) 2022-10-26T16:59:11,475 Installing collected packages: zipp, typing-extensions, tomli, setuptools, pyparsing, cython, packaging, importlib-metadata, setuptools_scm 2022-10-26T16:59:22,433 Creating /tmp/pip-build-env-zjnfufw6/overlay/bin 2022-10-26T16:59:22,438 changing mode of /tmp/pip-build-env-zjnfufw6/overlay/bin/cygdb to 755 2022-10-26T16:59:22,442 changing mode of /tmp/pip-build-env-zjnfufw6/overlay/bin/cython to 755 2022-10-26T16:59:22,446 changing mode of /tmp/pip-build-env-zjnfufw6/overlay/bin/cythonize to 755 2022-10-26T16:59:23,231 Successfully installed cython-0.29.32 importlib-metadata-5.0.0 packaging-21.3 pyparsing-3.0.9 setuptools-65.5.0 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.4.0 zipp-3.10.0 2022-10-26T16:59:23,827 Installing build dependencies: finished with status 'done' 2022-10-26T16:59:23,838 Getting requirements to build wheel: started 2022-10-26T16:59:23,842 Running command Getting requirements to build wheel 2022-10-26T16:59:45,741 Compiling whatshap/core.pyx because it depends on /tmp/pip-build-env-zjnfufw6/overlay/lib/python3.7/site-packages/Cython/Includes/libcpp/vector.pxd. 2022-10-26T16:59:45,742 Compiling whatshap/polyphase_solver.pyx because it depends on /tmp/pip-build-env-zjnfufw6/overlay/lib/python3.7/site-packages/Cython/Includes/libcpp/vector.pxd. 2022-10-26T16:59:45,743 Compiling whatshap/readselect.pyx because it depends on /tmp/pip-build-env-zjnfufw6/overlay/lib/python3.7/site-packages/Cython/Includes/libcpp/vector.pxd. 2022-10-26T16:59:45,743 Compiling whatshap/priorityqueue.pyx because it depends on /tmp/pip-build-env-zjnfufw6/overlay/lib/python3.7/site-packages/Cython/Includes/libcpp/vector.pxd. 2022-10-26T16:59:45,744 Compiling whatshap/align.pyx because it depends on /tmp/pip-build-env-zjnfufw6/overlay/lib/python3.7/site-packages/Cython/Includes/libc/__init__.pxd. 2022-10-26T16:59:45,744 [1/5] Cythonizing whatshap/align.pyx 2022-10-26T16:59:45,744 [2/5] Cythonizing whatshap/core.pyx 2022-10-26T16:59:45,745 [3/5] Cythonizing whatshap/polyphase_solver.pyx 2022-10-26T16:59:45,745 [4/5] Cythonizing whatshap/priorityqueue.pyx 2022-10-26T16:59:45,745 [5/5] Cythonizing whatshap/readselect.pyx 2022-10-26T16:59:46,275 running egg_info 2022-10-26T16:59:46,292 writing whatshap.egg-info/PKG-INFO 2022-10-26T16:59:46,296 writing dependency_links to whatshap.egg-info/dependency_links.txt 2022-10-26T16:59:46,300 writing entry points to whatshap.egg-info/entry_points.txt 2022-10-26T16:59:46,303 writing requirements to whatshap.egg-info/requires.txt 2022-10-26T16:59:46,305 writing top-level names to whatshap.egg-info/top_level.txt 2022-10-26T16:59:46,438 warning: whatshap/priorityqueue.pyx:201:7: Unreachable code 2022-10-26T16:59:46,438 listing git files failed - pretending there aren't any 2022-10-26T16:59:46,466 reading manifest file 'whatshap.egg-info/SOURCES.txt' 2022-10-26T16:59:46,561 reading manifest template 'MANIFEST.in' 2022-10-26T16:59:46,589 adding license file 'LICENSE' 2022-10-26T16:59:46,632 writing manifest file 'whatshap.egg-info/SOURCES.txt' 2022-10-26T16:59:47,872 Getting requirements to build wheel: finished with status 'done' 2022-10-26T16:59:47,917 Installing backend dependencies: started 2022-10-26T16:59:47,919 Running command pip subprocess to install backend dependencies 2022-10-26T16:59:50,965 Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2022-10-26T16:59:51,700 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-26T16:59:51,760 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-26T16:59:52,804 Collecting wheel 2022-10-26T16:59:52,841 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-10-26T16:59:56,706 Installing collected packages: wheel 2022-10-26T16:59:56,986 Creating /tmp/pip-build-env-zjnfufw6/normal/bin 2022-10-26T16:59:56,990 changing mode of /tmp/pip-build-env-zjnfufw6/normal/bin/wheel to 755 2022-10-26T16:59:57,018 Successfully installed wheel-0.37.1 2022-10-26T16:59:57,392 Installing backend dependencies: finished with status 'done' 2022-10-26T16:59:57,405 Created temporary directory: /tmp/pip-modern-metadata-vrcw5nmu 2022-10-26T16:59:57,411 Preparing metadata (pyproject.toml): started 2022-10-26T16:59:57,413 Running command Preparing metadata (pyproject.toml) 2022-10-26T17:00:01,647 running dist_info 2022-10-26T17:00:01,693 creating /tmp/pip-modern-metadata-vrcw5nmu/whatshap.egg-info 2022-10-26T17:00:01,707 writing /tmp/pip-modern-metadata-vrcw5nmu/whatshap.egg-info/PKG-INFO 2022-10-26T17:00:01,711 writing dependency_links to /tmp/pip-modern-metadata-vrcw5nmu/whatshap.egg-info/dependency_links.txt 2022-10-26T17:00:01,715 writing entry points to /tmp/pip-modern-metadata-vrcw5nmu/whatshap.egg-info/entry_points.txt 2022-10-26T17:00:01,717 writing requirements to /tmp/pip-modern-metadata-vrcw5nmu/whatshap.egg-info/requires.txt 2022-10-26T17:00:01,719 writing top-level names to /tmp/pip-modern-metadata-vrcw5nmu/whatshap.egg-info/top_level.txt 2022-10-26T17:00:01,721 writing manifest file '/tmp/pip-modern-metadata-vrcw5nmu/whatshap.egg-info/SOURCES.txt' 2022-10-26T17:00:01,850 listing git files failed - pretending there aren't any 2022-10-26T17:00:01,871 reading manifest file '/tmp/pip-modern-metadata-vrcw5nmu/whatshap.egg-info/SOURCES.txt' 2022-10-26T17:00:01,882 reading manifest template 'MANIFEST.in' 2022-10-26T17:00:01,932 adding license file 'LICENSE' 2022-10-26T17:00:01,951 writing manifest file '/tmp/pip-modern-metadata-vrcw5nmu/whatshap.egg-info/SOURCES.txt' 2022-10-26T17:00:01,954 creating '/tmp/pip-modern-metadata-vrcw5nmu/whatshap-1.6.dist-info' 2022-10-26T17:00:02,145 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-26T17:00:02,478 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-26T17:00:02,493 Source in /tmp/pip-wheel-13nbf7_m/whatshap_a5e4acce514646a98060ad03195f9a23 has version 1.6, which satisfies requirement whatshap==1.6 from https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz 2022-10-26T17:00:02,495 Removed whatshap==1.6 from https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz from build tracker '/tmp/pip-build-tracker-0hj10u_9' 2022-10-26T17:00:02,509 Created temporary directory: /tmp/pip-unpack-084jqnm2 2022-10-26T17:00:02,510 Building wheels for collected packages: whatshap 2022-10-26T17:00:02,519 Created temporary directory: /tmp/pip-wheel-w_t3dwqx 2022-10-26T17:00:02,519 Destination directory: /tmp/pip-wheel-w_t3dwqx 2022-10-26T17:00:02,525 Building wheel for whatshap (pyproject.toml): started 2022-10-26T17:00:02,527 Running command Building wheel for whatshap (pyproject.toml) 2022-10-26T17:00:07,189 running bdist_wheel 2022-10-26T17:00:07,236 running build 2022-10-26T17:00:07,237 running build_py 2022-10-26T17:00:07,259 creating build 2022-10-26T17:00:07,260 creating build/lib.linux-armv7l-cpython-37 2022-10-26T17:00:07,261 creating build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,262 copying whatshap/graph.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,266 copying whatshap/vcf.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,272 copying whatshap/bam.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,276 copying whatshap/__init__.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,279 copying whatshap/__main__.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,282 copying whatshap/merge.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,286 copying whatshap/coverage.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,289 copying whatshap/utils.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,292 copying whatshap/args.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,295 copying whatshap/timer.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,298 copying whatshap/_version.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,301 copying whatshap/reorder.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,305 copying whatshap/polyphaseplots.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,309 copying whatshap/variant.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,312 copying whatshap/threading.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,316 copying whatshap/polyphaseutil.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,320 copying whatshap/variants.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,325 copying whatshap/verification.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,328 copying whatshap/pedigree.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,332 copying whatshap/testhelpers.py -> build/lib.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,338 creating build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,339 copying whatshap/cli/phase.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,346 copying whatshap/cli/haplotag.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,351 copying whatshap/cli/compare.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,357 copying whatshap/cli/stats.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,362 copying whatshap/cli/__init__.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,366 copying whatshap/cli/find_snv_candidates.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,369 copying whatshap/cli/polyphase.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,375 copying whatshap/cli/genotype.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,379 copying whatshap/cli/hapcut2vcf.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,383 copying whatshap/cli/unphase.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,386 copying whatshap/cli/split.py -> build/lib.linux-armv7l-cpython-37/whatshap/cli 2022-10-26T17:00:07,396 running build_ext 2022-10-26T17:00:07,409 building 'whatshap.core' extension 2022-10-26T17:00:07,412 creating build/temp.linux-armv7l-cpython-37 2022-10-26T17:00:07,412 creating build/temp.linux-armv7l-cpython-37/src 2022-10-26T17:00:07,415 creating build/temp.linux-armv7l-cpython-37/src/hapchat 2022-10-26T17:00:07,418 creating build/temp.linux-armv7l-cpython-37/whatshap 2022-10-26T17:00:07,419 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/backwardcolumniterator.cpp -o build/temp.linux-armv7l-cpython-37/src/backwardcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:00:10,724 In file included from /usr/include/c++/8/cassert:44, 2022-10-26T17:00:10,724 from src/backwardcolumniterator.cpp:1: 2022-10-26T17:00:10,725 src/backwardcolumniterator.cpp: In member function ‘void BackwardColumnIterator::jump_to_column(int)’: 2022-10-26T17:00:10,725 src/backwardcolumniterator.cpp:121:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T17:00:10,725 assert(k < positions->size()); 2022-10-26T17:00:10,726 ~~^~~~~~~~~~~~~~~~~~~ 2022-10-26T17:00:10,726 src/backwardcolumniterator.cpp:140:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T17:00:10,727 assert(active_entry < read->getVariantCount()); 2022-10-26T17:00:10,727 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T17:00:15,018 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/binomial.cpp -o build/temp.linux-armv7l-cpython-37/src/binomial.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:00:15,672 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-cpython-37/src/columnindexingiterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:00:17,825 src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’: 2022-10-26T17:00:17,826 src/columnindexingiterator.cpp:90:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T17:00:17,826 for(int j=0; j< parent->read_ids.size(); ++j) { 2022-10-26T17:00:17,827 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T17:00:17,827 src/columnindexingiterator.cpp:92:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:00:17,828 if(m != -1) { 2022-10-26T17:00:17,828 ~~^~~~~ 2022-10-26T17:00:17,828 src/columnindexingiterator.cpp:89:15: warning: unused variable ‘s’ [-Wunused-variable] 2022-10-26T17:00:17,829 unsigned int s = 1; 2022-10-26T17:00:17,829 ^ 2022-10-26T17:00:18,578 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-cpython-37/src/columnindexingscheme.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:00:20,702 src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector&)’: 2022-10-26T17:00:20,702 src/columnindexingscheme.cpp:22:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T17:00:20,703 while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T17:00:20,704 while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T17:00:20,710 while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T17:00:20,711 while ((iread_ids.size()) && (j > ColumnIterator::get_next()’: 2022-10-26T17:00:25,081 src/columniterator.cpp:105:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T17:00:25,081 assert(list_it->active_entry < read->getVariantCount()); 2022-10-26T17:00:25,081 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T17:00:25,113 src/columniterator.cpp: In member function ‘void ColumnIterator::jump_to_column(size_t)’: 2022-10-26T17:00:25,113 src/columniterator.cpp:161:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T17:00:25,114 assert(active_entry < read->getVariantCount()); 2022-10-26T17:00:25,114 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T17:00:29,556 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/entry.cpp -o build/temp.linux-armv7l-cpython-37/src/entry.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:00:31,665 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotype.cpp -o build/temp.linux-armv7l-cpython-37/src/genotype.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:00:37,245 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotypecolumncostcomputer.cpp -o build/temp.linux-armv7l-cpython-37/src/genotypecolumncostcomputer.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:00:43,406 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotypedistribution.cpp -o build/temp.linux-armv7l-cpython-37/src/genotypedistribution.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:00:46,245 src/genotypedistribution.cpp: In member function ‘double GenotypeDistribution::errorProbability() const’: 2022-10-26T17:00:46,246 src/genotypedistribution.cpp:55:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T17:00:46,246 if (i == best_index) continue; 2022-10-26T17:00:46,247 ~~^~~~~~~~~~~~~ 2022-10-26T17:00:48,095 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotypedptable.cpp -o build/temp.linux-armv7l-cpython-37/src/genotypedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:00:52,388 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::clear_forward_table()’: 2022-10-26T17:00:52,388 src/genotypedptable.cpp:61:12: warning: unused variable ‘column_count’ [-Wunused-variable] 2022-10-26T17:00:52,389 size_t column_count = input_column_iterator.get_column_count(); 2022-10-26T17:00:52,389 ^~~~~~~~~~~~ 2022-10-26T17:00:52,493 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_index()’: 2022-10-26T17:00:52,493 src/genotypedptable.cpp:91:18: warning: unused variable ‘transmission_configurations’ [-Wunused-variable] 2022-10-26T17:00:52,493 unsigned int transmission_configurations = pow(4, pedigree->triple_count()); 2022-10-26T17:00:52,494 ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T17:00:52,501 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_backward_prob()’: 2022-10-26T17:00:52,502 src/genotypedptable.cpp:152:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-10-26T17:00:52,502 if ((k>1) && (column_index < column_count-1) && (((column_index+1)%k) != 0)) { 2022-10-26T17:00:52,503 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2022-10-26T17:00:52,510 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_forward_prob()’: 2022-10-26T17:00:52,511 src/genotypedptable.cpp:178:12: warning: unused variable ‘k’ [-Wunused-variable] 2022-10-26T17:00:52,511 size_t k = (size_t)sqrt(input_column_iterator.get_column_count()); 2022-10-26T17:00:52,511 ^ 2022-10-26T17:01:02,373 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/genotyper.cpp -o build/temp.linux-armv7l-cpython-37/src/genotyper.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:01:09,856 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/graycodes.cpp -o build/temp.linux-armv7l-cpython-37/src/graycodes.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:01:12,053 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/balancedcombinations.cpp -o build/temp.linux-armv7l-cpython-37/src/hapchat/balancedcombinations.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:01:21,612 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/basictypes.cpp -o build/temp.linux-armv7l-cpython-37/src/hapchat/basictypes.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:01:25,081 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/binomialcoefficient.cpp -o build/temp.linux-armv7l-cpython-37/src/hapchat/binomialcoefficient.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:01:31,123 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/hapchatcolumniterator.cpp -o build/temp.linux-armv7l-cpython-37/src/hapchat/hapchatcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:01:35,990 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/hapchat/hapchatcore.cpp -o build/temp.linux-armv7l-cpython-37/src/hapchat/hapchatcore.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:01:40,235 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’: 2022-10-26T17:01:40,235 src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable] 2022-10-26T17:01:40,236 Counter counter_columns; 2022-10-26T17:01:40,236 ^~~~~~~~~~~~~~~ 2022-10-26T17:01:40,265 src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector >&, const Pointer&, const bool&)’: 2022-10-26T17:01:40,265 src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:01:40,266 return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1))); 2022-10-26T17:01:40,266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:01:40,520 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector&, std::vector&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’: 2022-10-26T17:01:40,521 src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable] 2022-10-26T17:01:40,521 int old_k = k_j[input_pointer]; 2022-10-26T17:01:40,522 ^~~~~ 2022-10-26T17:01:40,558 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector >&, std::vector >&, std::vector >&, std::vector&, const bool&)’: 2022-10-26T17:01:40,559 src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:01:40,559 (colJ[j].get_read_id() != -1) && 2022-10-26T17:01:40,560 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:01:40,561 src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:01:40,561 (colQ[i].get_read_id() != -1)) { 2022-10-26T17:01:40,561 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:01:40,566 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’: 2022-10-26T17:01:40,567 src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:01:40,567 while(cov < column.size() && column[cov].get_read_id() != -1) { 2022-10-26T17:01:40,567 ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:01:40,577 src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’: 2022-10-26T17:01:40,578 src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:01:40,578 (colJ[j].get_read_id() != -1) && 2022-10-26T17:01:40,579 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:01:40,580 src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:01:40,580 (colQ[i].get_read_id() != -1)) { 2022-10-26T17:01:40,580 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:01:40,587 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector >&, std::vector&, std::vector&, std::vector&, const Pointer&, const Column&, std::vector&, const Counter&)’: 2022-10-26T17:01:40,587 src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:01:40,588 if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1) 2022-10-26T17:01:40,588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:01:42,523 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/indexset.cpp -o build/temp.linux-armv7l-cpython-37/src/indexset.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:01:46,037 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/pedigree.cpp -o build/temp.linux-armv7l-cpython-37/src/pedigree.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:01:48,806 In file included from /usr/include/c++/8/cassert:44, 2022-10-26T17:01:48,807 from src/pedigree.cpp:4: 2022-10-26T17:01:48,807 src/pedigree.cpp: In member function ‘void Pedigree::addIndividual(unsigned int, std::vector, std::vector)’: 2022-10-26T17:01:48,807 src/pedigree.cpp:32:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T17:01:48,808 assert(genotypes.size() == variant_count); 2022-10-26T17:01:48,808 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2022-10-26T17:01:48,809 src/pedigree.cpp:33:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T17:01:48,810 assert(genotype_likelihoods.size() == variant_count); 2022-10-26T17:01:48,810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2022-10-26T17:01:48,831 src/pedigree.cpp: In member function ‘const Genotype* Pedigree::get_genotype_by_id(unsigned int, unsigned int) const’: 2022-10-26T17:01:48,832 src/pedigree.cpp:70:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2022-10-26T17:01:48,832 assert(variant_index < variant_count); 2022-10-26T17:01:48,833 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2022-10-26T17:01:48,834 src/pedigree.cpp: In member function ‘const PhredGenotypeLikelihoods* Pedigree::get_genotype_likelihoods_by_id(unsigned int, unsigned int) const’: 2022-10-26T17:01:48,835 src/pedigree.cpp:81:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2022-10-26T17:01:48,835 assert(variant_index < variant_count); 2022-10-26T17:01:48,836 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2022-10-26T17:01:48,860 src/pedigree.cpp: In member function ‘std::__cxx11::string Pedigree::toString() const’: 2022-10-26T17:01:48,860 src/pedigree.cpp:112:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2022-10-26T17:01:48,861 for (size_t j=0; j&, size_t, const std::vector&, const Pedigree*, const PedigreePartitions&, bool)’: 2022-10-26T17:01:58,310 src/pedigreecolumncostcomputer.cpp:25:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:01:58,310 for (unsigned int i = 0; i < (1< PedigreeColumnCostComputer::get_alleles()’: 2022-10-26T17:01:58,377 src/pedigreecolumncostcomputer.cpp:119:15: warning: unused variable ‘second_best_cost’ [-Wunused-variable] 2022-10-26T17:01:58,378 unsigned int second_best_cost = numeric_limits < unsigned int >::max(); 2022-10-26T17:01:58,378 ^~~~~~~~~~~~~~~~ 2022-10-26T17:02:01,339 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/pedigreedptable.cpp -o build/temp.linux-armv7l-cpython-37/src/pedigreedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:02:16,491 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/pedigreepartitions.cpp -o build/temp.linux-armv7l-cpython-37/src/pedigreepartitions.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:02:20,693 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/phredgenotypelikelihoods.cpp -o build/temp.linux-armv7l-cpython-37/src/phredgenotypelikelihoods.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:02:24,693 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/read.cpp -o build/temp.linux-armv7l-cpython-37/src/read.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:02:32,047 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/readset.cpp -o build/temp.linux-armv7l-cpython-37/src/readset.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:02:45,377 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c src/transitionprobabilitycomputer.cpp -o build/temp.linux-armv7l-cpython-37/src/transitionprobabilitycomputer.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:02:53,567 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -UNDEBUG -I/usr/include/python3.7m -c whatshap/core.cpp -o build/temp.linux-armv7l-cpython-37/whatshap/core.o -std=c++11 -Werror=return-type -Werror=narrowing 2022-10-26T17:02:58,867 In file included from whatshap/core.cpp:839: 2022-10-26T17:02:58,868 whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’: 2022-10-26T17:02:58,868 whatshap/../src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable] 2022-10-26T17:02:58,869 Counter counter_columns; 2022-10-26T17:02:58,869 ^~~~~~~~~~~~~~~ 2022-10-26T17:02:58,886 whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector >&, const Pointer&, const bool&)’: 2022-10-26T17:02:58,887 whatshap/../src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:02:58,887 return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1))); 2022-10-26T17:02:58,888 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:02:59,141 In file included from whatshap/core.cpp:839: 2022-10-26T17:02:59,141 whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector&, std::vector&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’: 2022-10-26T17:02:59,142 whatshap/../src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable] 2022-10-26T17:02:59,142 int old_k = k_j[input_pointer]; 2022-10-26T17:02:59,142 ^~~~~ 2022-10-26T17:02:59,178 whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector >&, std::vector >&, std::vector >&, std::vector&, const bool&)’: 2022-10-26T17:02:59,178 whatshap/../src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:02:59,179 (colJ[j].get_read_id() != -1) && 2022-10-26T17:02:59,179 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:02:59,179 whatshap/../src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:02:59,180 (colQ[i].get_read_id() != -1)) { 2022-10-26T17:02:59,180 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:02:59,183 whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’: 2022-10-26T17:02:59,183 whatshap/../src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:02:59,184 while(cov < column.size() && column[cov].get_read_id() != -1) { 2022-10-26T17:02:59,184 ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:02:59,192 whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’: 2022-10-26T17:02:59,193 whatshap/../src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:02:59,193 (colJ[j].get_read_id() != -1) && 2022-10-26T17:02:59,194 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:02:59,194 whatshap/../src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:02:59,195 (colQ[i].get_read_id() != -1)) { 2022-10-26T17:02:59,195 ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:02:59,199 whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector >&, std::vector&, std::vector&, std::vector&, const Pointer&, const Column&, std::vector&, const Counter&)’: 2022-10-26T17:02:59,200 whatshap/../src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T17:02:59,200 if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1) 2022-10-26T17:02:59,200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2022-10-26T17:02:59,452 In file included from whatshap/../src/polyphase/haplothreader.h:4, 2022-10-26T17:02:59,452 from whatshap/core.cpp:844: 2022-10-26T17:02:59,453 whatshap/../src/polyphase/tuple.h: At global scope: 2022-10-26T17:02:59,453 whatshap/../src/polyphase/tuple.h:26:53: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,453 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2022-10-26T17:02:59,454 ^~ 2022-10-26T17:02:59,454 whatshap/../src/polyphase/tuple.h:27:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,454 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2022-10-26T17:02:59,455 ^~ 2022-10-26T17:02:59,455 whatshap/../src/polyphase/tuple.h:27:29: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,455 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2022-10-26T17:02:59,456 ^~ 2022-10-26T17:02:59,456 whatshap/../src/polyphase/tuple.h:27:41: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,456 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2022-10-26T17:02:59,457 ^~ 2022-10-26T17:02:59,457 whatshap/../src/polyphase/tuple.h:27:53: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,457 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2022-10-26T17:02:59,458 ^~ 2022-10-26T17:02:59,458 whatshap/../src/polyphase/tuple.h:26:50: error: right operand of shift expression ‘(31 << 35)’ is >= than the precision of the left operand [-fpermissive] 2022-10-26T17:02:59,459 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2022-10-26T17:02:59,459 ~~~~~^~~~~ 2022-10-26T17:02:59,526 In file included from whatshap/core.cpp:845: 2022-10-26T17:02:59,526 whatshap/../src/polyphase/switchflipcalculator.h:31:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,527 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2022-10-26T17:02:59,527 ^~ 2022-10-26T17:02:59,528 whatshap/../src/polyphase/switchflipcalculator.h:31:29: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,528 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2022-10-26T17:02:59,528 ^~ 2022-10-26T17:02:59,529 whatshap/../src/polyphase/switchflipcalculator.h:31:41: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,529 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2022-10-26T17:02:59,529 ^~ 2022-10-26T17:02:59,530 whatshap/../src/polyphase/switchflipcalculator.h:31:53: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,530 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2022-10-26T17:02:59,530 ^~ 2022-10-26T17:02:59,531 whatshap/../src/polyphase/switchflipcalculator.h:32:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,531 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2022-10-26T17:02:59,531 ^~ 2022-10-26T17:02:59,532 whatshap/../src/polyphase/switchflipcalculator.h:32:29: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,532 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2022-10-26T17:02:59,532 ^~ 2022-10-26T17:02:59,533 whatshap/../src/polyphase/switchflipcalculator.h:32:41: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,533 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2022-10-26T17:02:59,533 ^~ 2022-10-26T17:02:59,534 whatshap/../src/polyphase/switchflipcalculator.h:32:53: warning: left shift count >= width of type [-Wshift-count-overflow] 2022-10-26T17:02:59,534 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2022-10-26T17:02:59,534 ^~ 2022-10-26T17:02:59,535 whatshap/../src/polyphase/switchflipcalculator.h:31:14: error: right operand of shift expression ‘(15 << 32)’ is >= than the precision of the left operand [-fpermissive] 2022-10-26T17:02:59,535 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2022-10-26T17:02:59,535 ~~~~~^~~~~ 2022-10-26T17:03:00,139 whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_15PedigreeDPTable_4get_super_reads(__pyx_obj_8whatshap_4core_PedigreeDPTable*)’: 2022-10-26T17:03:00,140 whatshap/core.cpp:8943:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-10-26T17:03:00,140 for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { 2022-10-26T17:03:00,141 ~~~~~~~~~~^~~~~~~~~~~ 2022-10-26T17:03:00,653 whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_11HapChatCore_6get_super_reads(__pyx_obj_8whatshap_4core_HapChatCore*)’: 2022-10-26T17:03:00,653 whatshap/core.cpp:14832:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T17:03:00,653 for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { 2022-10-26T17:03:00,654 ~~~~~~~~~~^~~~~~~~~~~ 2022-10-26T17:03:04,497 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-10-26T17:03:04,828 ERROR: [present-rich] Building wheel for whatshap (pyproject.toml) exited with 1 2022-10-26T17:03:04,874 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpmukw_fq4[/] 2022-10-26T17:03:04,875 [bold magenta]cwd[/]: /tmp/pip-wheel-13nbf7_m/whatshap_a5e4acce514646a98060ad03195f9a23 2022-10-26T17:03:04,875 Building wheel for whatshap (pyproject.toml): finished with status 'error' 2022-10-26T17:03:04,880 ERROR: Failed building wheel for whatshap 2022-10-26T17:03:04,885 Failed to build whatshap 2022-10-26T17:03:04,887 ERROR: Failed to build one or more wheels 2022-10-26T17:03:04,890 Exception information: 2022-10-26T17:03:04,890 Traceback (most recent call last): 2022-10-26T17:03:04,890 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-10-26T17:03:04,890 status = run_func(*args) 2022-10-26T17:03:04,890 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-10-26T17:03:04,890 return func(self, options, args) 2022-10-26T17:03:04,890 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-10-26T17:03:04,890 raise CommandError("Failed to build one or more wheels") 2022-10-26T17:03:04,890 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-10-26T17:03:04,928 Removed build tracker: '/tmp/pip-build-tracker-0hj10u_9'