2022-10-26T17:12:15,104 Created temporary directory: /tmp/pip-ephem-wheel-cache-hbw5qglr
2022-10-26T17:12:15,106 Created temporary directory: /tmp/pip-build-tracker-1gyd8scy
2022-10-26T17:12:15,106 Initialized build tracking at /tmp/pip-build-tracker-1gyd8scy
2022-10-26T17:12:15,107 Created build tracker: /tmp/pip-build-tracker-1gyd8scy
2022-10-26T17:12:15,107 Entered build tracker: /tmp/pip-build-tracker-1gyd8scy
2022-10-26T17:12:15,107 Created temporary directory: /tmp/pip-wheel-5eq2x2v5
2022-10-26T17:12:15,110 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-26T17:12:15,113 Created temporary directory: /tmp/pip-ephem-wheel-cache-8pm59h2a
2022-10-26T17:12:15,140 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-26T17:12:15,144 2 location(s) to search for versions of whatshap:
2022-10-26T17:12:15,144 * https://pypi.org/simple/whatshap/
2022-10-26T17:12:15,144 * https://www.piwheels.org/simple/whatshap/
2022-10-26T17:12:15,144 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/
2022-10-26T17:12:15,144 Getting page https://pypi.org/simple/whatshap/
2022-10-26T17:12:15,146 Found index url https://pypi.org/simple
2022-10-26T17:12:15,199 Fetched page https://pypi.org/simple/whatshap/ as application/vnd.pypi.simple.v1+json
2022-10-26T17:12:15,210   Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.9
2022-10-26T17:12:15,210   Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.10
2022-10-26T17:12:15,210   Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.11
2022-10-26T17:12:15,211   Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.12
2022-10-26T17:12:15,211   Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.13
2022-10-26T17:12:15,211   Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14
2022-10-26T17:12:15,211   Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14.1
2022-10-26T17:12:15,212   Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.15
2022-10-26T17:12:15,212   Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.16
2022-10-26T17:12:15,212   Found link https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.17
2022-10-26T17:12:15,213   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/97/19/5758de9357d2639e81f774dffd5227278df2df7f56e81f080098f00c8d5a/whatshap-0.18-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,213   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d0/72/94dc654f66164a351a1a9540e28b4bdf34a81046fbf26b5955725bea2f64/whatshap-0.18-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,213   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0a/50/c9c89e7f3a59251a91e618165ccc2586b626643a4c59dfd8d1b32f9b6bbb/whatshap-0.18-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,213   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,214   Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18
2022-10-26T17:12:15,214   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,214   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,215   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,215   Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0
2022-10-26T17:12:15,215   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,216   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,216   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,216   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,216   Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1
2022-10-26T17:12:15,217   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ce/5e/0c32569323ea5e7c036cd9344aa669d92e4a30bbcd4a00dda5483dad67a4/whatshap-1.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,217   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c0/b0/0055bf0099361e24f02851b3df68d75e1165a7e13d8b6c4a5bbf1215f924/whatshap-1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,217   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/43/09/3fe5c7130f5356b2b7b911539b52c090e2ee6532c14fc3f29fdbf6c2b569/whatshap-1.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,217   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d1/af/55a5fe140b3a0491c7a19b961b8b6275573194827fb52c17908b2e2699b5/whatshap-1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,218   Found link https://files.pythonhosted.org/packages/24/ba/a6b7ded0e342f0cdeb268e0e92b1c0812ca9c0804e11efc8c4e7e5cb6be9/whatshap-1.2.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2
2022-10-26T17:12:15,218   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/19/36/1423d4adb6f4d7e58f5fdf8c59aaa8b5cec9d73bb5b2450f17f4089e8438/whatshap-1.2.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,218   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/9c/52ce1b726a9b98f628c468b30877edc720c6c8022ae0d13fee6088f894b6/whatshap-1.2.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,219   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/22/c1/d7295d4b3732dc286990b85348401b3bf932bdcb196162f14100472683f3/whatshap-1.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,219   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ff/36/181d416f2c1557879d2647e73964bd0d5d2fd3b79376ec3463435d2363ba/whatshap-1.2.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,219   Found link https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2.1
2022-10-26T17:12:15,220   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/34/c8/7365412dc082fc9b1a0415cde547086f44e0196148ec60ffdd49afc8ecf5/whatshap-1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,220   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/76/52/dca5eac4abe3642ccf23b7dbbf4283589e4065c13f5bd9240e84c3227b4e/whatshap-1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,220   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/08/df/825622346a1833f3b1fc5b89f613b711eb1003cb2a04986ad3016b22bae3/whatshap-1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,220   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/36/4a/c1dc0eb7ebde0b5e5ad75d202f1c994399ca25bab7a31fe56da18185865f/whatshap-1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2022-10-26T17:12:15,221   Found link https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.3
2022-10-26T17:12:15,221   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/60/13/79e33b73a1b737584ad7e23c662a1b621c417813d0d8d81936fe0fe6608f/whatshap-1.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,221   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/5c/c5/96fe2f18f74aee649db37a25a583d01219c01dfae7b33af7df36f5eee414/whatshap-1.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,221   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/16/12/069f3e690d0af16ee52c63dcad13bfb35b8fbd9b03f56ea8682a8ed47bf6/whatshap-1.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,222   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/25/cf/3c12968b3e30141df2e518fe234bf38341db7474df5f890bd1c67664541f/whatshap-1.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,222   Found link https://files.pythonhosted.org/packages/15/1e/1b29e356fc0b8a1fbbffe808c02a67eae8ebd922a78567aa5eb867b47070/whatshap-1.4.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.4
2022-10-26T17:12:15,222   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/b6/5b/6e5b19bbab49bf45651cdf2eac3fe33a06d7959f65cfeba15dd08bae35e9/whatshap-1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,223   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/14/cf/91e8519226ffc8d3459582832b7d0cdf4fda7b4c324deecfadce3f55be55/whatshap-1.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,223   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/be/b4/0b3c2b6952cf006809cc1133e3c4c4b907458949bd5fa263114d26ea1670/whatshap-1.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,223   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/d3/37e4980f972894b48ee1ec36c98e6c3a530b37eed7721bb9010626e920b6/whatshap-1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,224   Found link https://files.pythonhosted.org/packages/2a/0a/71c5db75b44c886e492294328b41f970bfcfdef1c409e8ed3981a0ff519e/whatshap-1.5.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.5
2022-10-26T17:12:15,224   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/f8/76/4a671a933194f2ccbf2fc70513516312fae6054fbdbe69b250919082fa4c/whatshap-1.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,224   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/86/778bbef5c06bdf48c738fdcd64c0a947398d78a168d1dfc949fc7665afa2/whatshap-1.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,224   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/9d/60/749fe7dcbb28f21abc3190a171443c8f78d7a20a1a1dfac592966fb55dc4/whatshap-1.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,224   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/cd/76/28f1ce30b1cf0a26eae2a508d057b78425595104780955b36e938ac7fcbe/whatshap-1.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2022-10-26T17:12:15,225   Found link https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.6
2022-10-26T17:12:15,225 Fetching project page and analyzing links: https://www.piwheels.org/simple/whatshap/
2022-10-26T17:12:15,226 Getting page https://www.piwheels.org/simple/whatshap/
2022-10-26T17:12:15,227 Found index url https://www.piwheels.org/simple
2022-10-26T17:12:15,773 Fetched page https://www.piwheels.org/simple/whatshap/ as text/html
2022-10-26T17:12:15,801   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv7l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,802   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv6l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,803   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv6l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,803   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv7l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,803   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv6l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,804   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv7l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2022-10-26T17:12:15,804   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv6l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,805   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv7l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,805   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv6l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,806   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv7l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,806   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv7l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,806   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv6l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,807   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv7l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,807   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv6l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,808   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv6l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,808   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv7l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,809   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp37-cp37m-linux_armv7l.whl#sha256=fe3e47cf1e67574d1d04b795d1d03a06c7c8248004a6f79aed017577f212dfac (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,809   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp37-cp37m-linux_armv6l.whl#sha256=fe3e47cf1e67574d1d04b795d1d03a06c7c8248004a6f79aed017577f212dfac (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,809   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv6l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,810   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv7l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,810   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv7l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,811   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv6l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,811   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,812   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,812   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,812   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,813   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv6l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,813   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv7l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,814   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv6l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,814   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv7l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,814   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv7l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,815   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv6l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,815   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv6l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,816   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv7l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,816   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv6l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,816   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv7l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,817   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv7l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,817   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv6l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,818   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv6l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,818   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv7l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,819   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv6l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,819   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv7l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,820   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv6l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,820   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv7l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,820   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv6l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,821   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv7l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,821   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv7l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,822   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv6l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/)
2022-10-26T17:12:15,822 Skipping link: not a file: https://www.piwheels.org/simple/whatshap/
2022-10-26T17:12:15,823 Skipping link: not a file: https://pypi.org/simple/whatshap/
2022-10-26T17:12:15,853 Given no hashes to check 1 links for project 'whatshap': discarding no candidates
2022-10-26T17:12:15,869 Collecting whatshap==1.6
2022-10-26T17:12:15,871   Created temporary directory: /tmp/pip-unpack-iny66wq1
2022-10-26T17:12:16,018   Downloading whatshap-1.6.tar.gz (5.2 MB)
2022-10-26T17:12:17,462   Added whatshap==1.6 from https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz to build tracker '/tmp/pip-build-tracker-1gyd8scy'
2022-10-26T17:12:17,468   Created temporary directory: /tmp/pip-build-env-ulviwsga
2022-10-26T17:12:17,475   Installing build dependencies: started
2022-10-26T17:12:17,476   Running command pip subprocess to install build dependencies
2022-10-26T17:12:18,684   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-10-26T17:12:19,071   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-26T17:12:19,096   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-26T17:12:20,710   Collecting setuptools>=43
2022-10-26T17:12:20,846     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB)
2022-10-26T17:12:21,241   Collecting setuptools_scm
2022-10-26T17:12:21,259     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB)
2022-10-26T17:12:22,560   Collecting cython~=0.29.20
2022-10-26T17:12:23,077     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-10-26T17:12:23,433   Collecting packaging>=20.0
2022-10-26T17:12:23,451     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-10-26T17:12:23,571   Collecting tomli>=1.0.0
2022-10-26T17:12:23,588     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-10-26T17:12:23,688   Collecting typing-extensions
2022-10-26T17:12:23,727     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.4.0-py3-none-any.whl (26 kB)
2022-10-26T17:12:23,996   Collecting pyparsing!=3.0.5,>=2.0.2
2022-10-26T17:12:24,017     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-10-26T17:12:26,031   Installing collected packages: typing-extensions, tomli, setuptools, pyparsing, cython, packaging, setuptools_scm
2022-10-26T17:12:31,822     Creating /tmp/pip-build-env-ulviwsga/overlay/bin
2022-10-26T17:12:31,825     changing mode of /tmp/pip-build-env-ulviwsga/overlay/bin/cygdb to 755
2022-10-26T17:12:31,827     changing mode of /tmp/pip-build-env-ulviwsga/overlay/bin/cython to 755
2022-10-26T17:12:31,829     changing mode of /tmp/pip-build-env-ulviwsga/overlay/bin/cythonize to 755
2022-10-26T17:12:32,168   Successfully installed cython-0.29.32 packaging-21.3 pyparsing-3.0.9 setuptools-65.5.0 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.4.0
2022-10-26T17:12:32,517   Installing build dependencies: finished with status 'done'
2022-10-26T17:12:32,523   Getting requirements to build wheel: started
2022-10-26T17:12:32,524   Running command Getting requirements to build wheel
2022-10-26T17:12:40,744   warning: whatshap/priorityqueue.pyx:201:7: Unreachable code
2022-10-26T17:12:42,146   Compiling whatshap/core.pyx because it depends on /tmp/pip-build-env-ulviwsga/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-10-26T17:12:42,146   Compiling whatshap/polyphase_solver.pyx because it depends on /tmp/pip-build-env-ulviwsga/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-10-26T17:12:42,147   Compiling whatshap/readselect.pyx because it depends on /tmp/pip-build-env-ulviwsga/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-10-26T17:12:42,147   Compiling whatshap/priorityqueue.pyx because it depends on /tmp/pip-build-env-ulviwsga/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-10-26T17:12:42,147   Compiling whatshap/align.pyx because it depends on /tmp/pip-build-env-ulviwsga/overlay/lib/python3.9/site-packages/Cython/Includes/libc/__init__.pxd.
2022-10-26T17:12:42,147   [1/5] Cythonizing whatshap/align.pyx
2022-10-26T17:12:42,147   [2/5] Cythonizing whatshap/core.pyx
2022-10-26T17:12:42,147   [3/5] Cythonizing whatshap/polyphase_solver.pyx
2022-10-26T17:12:42,148   [4/5] Cythonizing whatshap/priorityqueue.pyx
2022-10-26T17:12:42,148   [5/5] Cythonizing whatshap/readselect.pyx
2022-10-26T17:12:42,382   running egg_info
2022-10-26T17:12:42,390   writing whatshap.egg-info/PKG-INFO
2022-10-26T17:12:42,392   writing dependency_links to whatshap.egg-info/dependency_links.txt
2022-10-26T17:12:42,394   writing entry points to whatshap.egg-info/entry_points.txt
2022-10-26T17:12:42,396   writing requirements to whatshap.egg-info/requires.txt
2022-10-26T17:12:42,397   writing top-level names to whatshap.egg-info/top_level.txt
2022-10-26T17:12:42,457   listing git files failed - pretending there aren't any
2022-10-26T17:12:42,470   reading manifest file 'whatshap.egg-info/SOURCES.txt'
2022-10-26T17:12:42,519   reading manifest template 'MANIFEST.in'
2022-10-26T17:12:42,532   adding license file 'LICENSE'
2022-10-26T17:12:42,548   writing manifest file 'whatshap.egg-info/SOURCES.txt'
2022-10-26T17:12:43,404   Getting requirements to build wheel: finished with status 'done'
2022-10-26T17:12:43,423   Installing backend dependencies: started
2022-10-26T17:12:43,424   Running command pip subprocess to install backend dependencies
2022-10-26T17:12:44,643   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-10-26T17:12:45,027   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-26T17:12:45,053   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-26T17:12:45,555   Collecting wheel
2022-10-26T17:12:45,574     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-10-26T17:12:47,160   Installing collected packages: wheel
2022-10-26T17:12:47,304     Creating /tmp/pip-build-env-ulviwsga/normal/bin
2022-10-26T17:12:47,307     changing mode of /tmp/pip-build-env-ulviwsga/normal/bin/wheel to 755
2022-10-26T17:12:47,321   Successfully installed wheel-0.37.1
2022-10-26T17:12:47,543   Installing backend dependencies: finished with status 'done'
2022-10-26T17:12:47,545   Created temporary directory: /tmp/pip-modern-metadata-_xnwa9f_
2022-10-26T17:12:47,548   Preparing metadata (pyproject.toml): started
2022-10-26T17:12:47,549   Running command Preparing metadata (pyproject.toml)
2022-10-26T17:12:49,285   running dist_info
2022-10-26T17:12:49,307   creating /tmp/pip-modern-metadata-_xnwa9f_/whatshap.egg-info
2022-10-26T17:12:49,315   writing /tmp/pip-modern-metadata-_xnwa9f_/whatshap.egg-info/PKG-INFO
2022-10-26T17:12:49,317   writing dependency_links to /tmp/pip-modern-metadata-_xnwa9f_/whatshap.egg-info/dependency_links.txt
2022-10-26T17:12:49,319   writing entry points to /tmp/pip-modern-metadata-_xnwa9f_/whatshap.egg-info/entry_points.txt
2022-10-26T17:12:49,321   writing requirements to /tmp/pip-modern-metadata-_xnwa9f_/whatshap.egg-info/requires.txt
2022-10-26T17:12:49,322   writing top-level names to /tmp/pip-modern-metadata-_xnwa9f_/whatshap.egg-info/top_level.txt
2022-10-26T17:12:49,324   writing manifest file '/tmp/pip-modern-metadata-_xnwa9f_/whatshap.egg-info/SOURCES.txt'
2022-10-26T17:12:49,384   listing git files failed - pretending there aren't any
2022-10-26T17:12:49,395   reading manifest file '/tmp/pip-modern-metadata-_xnwa9f_/whatshap.egg-info/SOURCES.txt'
2022-10-26T17:12:49,399   reading manifest template 'MANIFEST.in'
2022-10-26T17:12:49,423   adding license file 'LICENSE'
2022-10-26T17:12:49,430   writing manifest file '/tmp/pip-modern-metadata-_xnwa9f_/whatshap.egg-info/SOURCES.txt'
2022-10-26T17:12:49,432   creating '/tmp/pip-modern-metadata-_xnwa9f_/whatshap-1.6.dist-info'
2022-10-26T17:12:49,522   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-10-26T17:12:49,716   Preparing metadata (pyproject.toml): finished with status 'done'
2022-10-26T17:12:49,724   Source in /tmp/pip-wheel-5eq2x2v5/whatshap_402d3f4218d24c0c8c8f4693153a7bb6 has version 1.6, which satisfies requirement whatshap==1.6 from https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz
2022-10-26T17:12:49,725   Removed whatshap==1.6 from https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz from build tracker '/tmp/pip-build-tracker-1gyd8scy'
2022-10-26T17:12:49,731 Created temporary directory: /tmp/pip-unpack-b0fza_9y
2022-10-26T17:12:49,732 Building wheels for collected packages: whatshap
2022-10-26T17:12:49,737   Created temporary directory: /tmp/pip-wheel-1bt3w2az
2022-10-26T17:12:49,737   Destination directory: /tmp/pip-wheel-1bt3w2az
2022-10-26T17:12:49,740   Building wheel for whatshap (pyproject.toml): started
2022-10-26T17:12:49,741   Running command Building wheel for whatshap (pyproject.toml)
2022-10-26T17:12:51,693   running bdist_wheel
2022-10-26T17:12:51,714   running build
2022-10-26T17:12:51,714   running build_py
2022-10-26T17:12:51,724   creating build
2022-10-26T17:12:51,724   creating build/lib.linux-armv7l-cpython-39
2022-10-26T17:12:51,725   creating build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,726   copying whatshap/args.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,728   copying whatshap/_version.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,729   copying whatshap/verification.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,731   copying whatshap/bam.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,733   copying whatshap/threading.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,736   copying whatshap/polyphaseplots.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,738   copying whatshap/variants.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,741   copying whatshap/polyphaseutil.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,743   copying whatshap/graph.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,745   copying whatshap/__init__.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,747   copying whatshap/reorder.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,749   copying whatshap/utils.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,751   copying whatshap/coverage.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,752   copying whatshap/pedigree.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,755   copying whatshap/testhelpers.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,757   copying whatshap/merge.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,759   copying whatshap/timer.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,761   copying whatshap/__main__.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,763   copying whatshap/variant.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,764   copying whatshap/vcf.py -> build/lib.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,768   creating build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,769   copying whatshap/cli/phase.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,772   copying whatshap/cli/find_snv_candidates.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,774   copying whatshap/cli/__init__.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,776   copying whatshap/cli/hapcut2vcf.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,778   copying whatshap/cli/polyphase.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,782   copying whatshap/cli/split.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,784   copying whatshap/cli/stats.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,787   copying whatshap/cli/genotype.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,789   copying whatshap/cli/unphase.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,791   copying whatshap/cli/haplotag.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,794   copying whatshap/cli/compare.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2022-10-26T17:12:51,799   running build_ext
2022-10-26T17:12:51,805   building 'whatshap.core' extension
2022-10-26T17:12:51,806   creating build/temp.linux-armv7l-cpython-39
2022-10-26T17:12:51,807   creating build/temp.linux-armv7l-cpython-39/src
2022-10-26T17:12:51,808   creating build/temp.linux-armv7l-cpython-39/src/hapchat
2022-10-26T17:12:51,810   creating build/temp.linux-armv7l-cpython-39/whatshap
2022-10-26T17:12:51,810   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/backwardcolumniterator.cpp -o build/temp.linux-armv7l-cpython-39/src/backwardcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:12:53,443   In file included from /usr/include/c++/10/cassert:44,
2022-10-26T17:12:53,444                    from src/backwardcolumniterator.cpp:1:
2022-10-26T17:12:53,444   src/backwardcolumniterator.cpp: In member function ‘void BackwardColumnIterator::jump_to_column(int)’:
2022-10-26T17:12:53,444   src/backwardcolumniterator.cpp:121:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T17:12:53,444     121 |  assert(k < positions->size());
2022-10-26T17:12:53,444         |         ~~^~~~~~~~~~~~~~~~~~~
2022-10-26T17:12:53,444   src/backwardcolumniterator.cpp:140:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T17:12:53,445     140 |     assert(active_entry < read->getVariantCount());
2022-10-26T17:12:53,445         |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:12:55,016   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/binomial.cpp -o build/temp.linux-armv7l-cpython-39/src/binomial.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:12:55,297   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-cpython-39/src/columnindexingiterator.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:12:56,384   src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’:
2022-10-26T17:12:56,384   src/columnindexingiterator.cpp:90:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T17:12:56,384      90 |  for(int j=0; j< parent->read_ids.size(); ++j) {
2022-10-26T17:12:56,385         |               ~^~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:12:56,385   src/columnindexingiterator.cpp:92:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:12:56,385      92 |   if(m != -1) {
2022-10-26T17:12:56,385         |      ~~^~~~~
2022-10-26T17:12:56,386   src/columnindexingiterator.cpp:89:15: warning: unused variable ‘s’ [-Wunused-variable]
2022-10-26T17:12:56,386      89 |  unsigned int s = 1;
2022-10-26T17:12:56,386         |               ^
2022-10-26T17:12:56,671   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-cpython-39/src/columnindexingscheme.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:12:57,748   src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector<unsigned int>&)’:
2022-10-26T17:12:57,748   src/columnindexingscheme.cpp:22:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T17:12:57,749      22 |   while ((i<previous_column->read_ids.size()) && (j<read_ids.size())) {
2022-10-26T17:12:57,749         |           ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:12:57,749   src/columnindexingscheme.cpp:22:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T17:12:57,749      22 |   while ((i<previous_column->read_ids.size()) && (j<read_ids.size())) {
2022-10-26T17:12:57,749         |                                                   ~^~~~~~~~~~~~~~~~
2022-10-26T17:12:57,751   src/columnindexingscheme.cpp: In member function ‘void ColumnIndexingScheme::set_next_column(const ColumnIndexingScheme*)’:
2022-10-26T17:12:57,751   src/columnindexingscheme.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T17:12:57,752      71 |  while ((i<next_column->read_ids.size()) && (j<read_ids.size())) {
2022-10-26T17:12:57,752         |          ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:12:57,752   src/columnindexingscheme.cpp:71:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T17:12:57,752      71 |  while ((i<next_column->read_ids.size()) && (j<read_ids.size())) {
2022-10-26T17:12:57,752         |                                              ~^~~~~~~~~~~~~~~~
2022-10-26T17:12:58,254   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/columniterator.cpp -o build/temp.linux-armv7l-cpython-39/src/columniterator.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:12:59,841   In file included from /usr/include/c++/10/cassert:44,
2022-10-26T17:12:59,842                    from src/columniterator.cpp:1:
2022-10-26T17:12:59,842   src/columniterator.cpp: In member function ‘std::unique_ptr<std::vector<const Entry*> > ColumnIterator::get_next()’:
2022-10-26T17:12:59,842   src/columniterator.cpp:105:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T17:12:59,842     105 |    assert(list_it->active_entry < read->getVariantCount());
2022-10-26T17:12:59,842         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:12:59,859   src/columniterator.cpp: In member function ‘void ColumnIterator::jump_to_column(size_t)’:
2022-10-26T17:12:59,860   src/columniterator.cpp:161:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T17:12:59,860     161 |     assert(active_entry < read->getVariantCount());
2022-10-26T17:12:59,860         |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:13:01,482   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/entry.cpp -o build/temp.linux-armv7l-cpython-39/src/entry.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:02,671   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotype.cpp -o build/temp.linux-armv7l-cpython-39/src/genotype.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:05,089   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotypecolumncostcomputer.cpp -o build/temp.linux-armv7l-cpython-39/src/genotypecolumncostcomputer.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:07,899   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotypedistribution.cpp -o build/temp.linux-armv7l-cpython-39/src/genotypedistribution.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:09,088   src/genotypedistribution.cpp: In member function ‘double GenotypeDistribution::errorProbability() const’:
2022-10-26T17:13:09,088   src/genotypedistribution.cpp:55:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T17:13:09,089      55 |   if (i == best_index) continue;
2022-10-26T17:13:09,089         |       ~~^~~~~~~~~~~~~
2022-10-26T17:13:09,558   In file included from /usr/include/c++/10/vector:72,
2022-10-26T17:13:09,558                    from src/genotypedistribution.h:4,
2022-10-26T17:13:09,558                    from src/genotypedistribution.cpp:5:
2022-10-26T17:13:09,559   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2022-10-26T17:13:09,559   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-10-26T17:13:09,559     426 |       vector<_Tp, _Alloc>::
2022-10-26T17:13:09,559         |       ^~~~~~~~~~~~~~~~~~~
2022-10-26T17:13:09,593   In file included from /usr/include/c++/10/vector:67,
2022-10-26T17:13:09,593                    from src/genotypedistribution.h:4,
2022-10-26T17:13:09,593                    from src/genotypedistribution.cpp:5:
2022-10-26T17:13:09,593   /usr/include/c++/10/bits/stl_vector.h: In constructor ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’:
2022-10-26T17:13:09,593   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-10-26T17:13:09,594    1198 |    _M_realloc_insert(end(), __x);
2022-10-26T17:13:09,594         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-26T17:13:09,594   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-10-26T17:13:09,594    1198 |    _M_realloc_insert(end(), __x);
2022-10-26T17:13:09,594         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-26T17:13:09,594   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-10-26T17:13:09,594    1198 |    _M_realloc_insert(end(), __x);
2022-10-26T17:13:09,595         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-26T17:13:09,777   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotypedptable.cpp -o build/temp.linux-armv7l-cpython-39/src/genotypedptable.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:11,876   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::clear_forward_table()’:
2022-10-26T17:13:11,876   src/genotypedptable.cpp:61:12: warning: unused variable ‘column_count’ [-Wunused-variable]
2022-10-26T17:13:11,877      61 |     size_t column_count = input_column_iterator.get_column_count();
2022-10-26T17:13:11,877         |            ^~~~~~~~~~~~
2022-10-26T17:13:11,932   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_index()’:
2022-10-26T17:13:11,932   src/genotypedptable.cpp:91:18: warning: unused variable ‘transmission_configurations’ [-Wunused-variable]
2022-10-26T17:13:11,932      91 |     unsigned int transmission_configurations = pow(4, pedigree->triple_count());
2022-10-26T17:13:11,932         |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:13:11,936   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_backward_prob()’:
2022-10-26T17:13:11,936   src/genotypedptable.cpp:152:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-10-26T17:13:11,936     152 |         if ((k>1) && (column_index < column_count-1) && (((column_index+1)%k) != 0)) {
2022-10-26T17:13:11,936         |                       ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2022-10-26T17:13:11,939   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_forward_prob()’:
2022-10-26T17:13:11,940   src/genotypedptable.cpp:178:12: warning: unused variable ‘k’ [-Wunused-variable]
2022-10-26T17:13:11,940     178 |     size_t k = (size_t)sqrt(input_column_iterator.get_column_count());
2022-10-26T17:13:11,940         |            ^
2022-10-26T17:13:15,678   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotyper.cpp -o build/temp.linux-armv7l-cpython-39/src/genotyper.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:18,010   In file included from /usr/include/c++/10/vector:72,
2022-10-26T17:13:18,010                    from src/columniterator.h:4,
2022-10-26T17:13:18,010                    from src/genotyper.cpp:6:
2022-10-26T17:13:18,010   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Genotype&}; _Tp = Genotype; _Alloc = std::allocator<Genotype>]’:
2022-10-26T17:13:18,010   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Genotype>::iterator’ changed in GCC 7.1
2022-10-26T17:13:18,011     426 |       vector<_Tp, _Alloc>::
2022-10-26T17:13:18,011         |       ^~~~~~~~~~~~~~~~~~~
2022-10-26T17:13:18,202   In file included from /usr/include/c++/10/vector:67,
2022-10-26T17:13:18,202                    from src/columniterator.h:4,
2022-10-26T17:13:18,202                    from src/genotyper.cpp:6:
2022-10-26T17:13:18,202   /usr/include/c++/10/bits/stl_vector.h: In function ‘void compute_genotypes(const ReadSet&, std::vector<Genotype>*, std::vector<GenotypeDistribution>*, std::vector<unsigned int>*)’:
2022-10-26T17:13:18,202   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Genotype*, std::vector<Genotype> >’ changed in GCC 7.1
2022-10-26T17:13:18,203    1198 |    _M_realloc_insert(end(), __x);
2022-10-26T17:13:18,203         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-26T17:13:18,373   In file included from /usr/include/c++/10/vector:72,
2022-10-26T17:13:18,373                    from src/columniterator.h:4,
2022-10-26T17:13:18,373                    from src/genotyper.cpp:6:
2022-10-26T17:13:18,373   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Genotype}; _Tp = Genotype; _Alloc = std::allocator<Genotype>]’:
2022-10-26T17:13:18,374   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Genotype>::iterator’ changed in GCC 7.1
2022-10-26T17:13:18,374     426 |       vector<_Tp, _Alloc>::
2022-10-26T17:13:18,374         |       ^~~~~~~~~~~~~~~~~~~
2022-10-26T17:13:18,486   /usr/include/c++/10/bits/vector.tcc: In function ‘void compute_polyploid_genotypes(const ReadSet&, size_t, std::vector<Genotype>*, std::vector<unsigned int>*)’:
2022-10-26T17:13:18,486   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Genotype*, std::vector<Genotype> >’ changed in GCC 7.1
2022-10-26T17:13:18,486     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2022-10-26T17:13:18,486         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:13:18,487   In file included from /usr/include/c++/10/vector:67,
2022-10-26T17:13:18,487                    from src/columniterator.h:4,
2022-10-26T17:13:18,487                    from src/genotyper.cpp:6:
2022-10-26T17:13:18,487   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Genotype*, std::vector<Genotype> >’ changed in GCC 7.1
2022-10-26T17:13:18,488    1198 |    _M_realloc_insert(end(), __x);
2022-10-26T17:13:18,488         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-26T17:13:18,897   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/graycodes.cpp -o build/temp.linux-armv7l-cpython-39/src/graycodes.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:19,912   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/balancedcombinations.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/balancedcombinations.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:23,546   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/basictypes.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/basictypes.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:25,187   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/binomialcoefficient.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/binomialcoefficient.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:27,745   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/hapchatcolumniterator.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/hapchatcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:30,029   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/hapchat/hapchatcore.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/hapchatcore.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:32,146   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’:
2022-10-26T17:13:32,146   src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable]
2022-10-26T17:13:32,146     145 |   Counter counter_columns;
2022-10-26T17:13:32,146         |           ^~~~~~~~~~~~~~~
2022-10-26T17:13:32,156   src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector<std::vector<Entry> >&, const Pointer&, const bool&)’:
2022-10-26T17:13:32,157   src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:13:32,157     208 |   return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1)));
2022-10-26T17:13:32,157         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:13:32,297   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector<bool>&, std::vector<bool>&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’:
2022-10-26T17:13:32,297   src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable]
2022-10-26T17:13:32,298     939 |    int old_k = k_j[input_pointer];
2022-10-26T17:13:32,298         |        ^~~~~
2022-10-26T17:13:32,316   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::bitset<64> >&, std::vector<unsigned int>&, const bool&)’:
2022-10-26T17:13:32,317   src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:13:32,317    1114 |          (colJ[j].get_read_id() != -1) &&
2022-10-26T17:13:32,317         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:13:32,317   src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:13:32,317    1115 |          (colQ[i].get_read_id() != -1)) {
2022-10-26T17:13:32,318         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:13:32,320   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’:
2022-10-26T17:13:32,320   src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:13:32,321    1159 |   while(cov < column.size() && column[cov].get_read_id() != -1) {
2022-10-26T17:13:32,321         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:13:32,326   src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’:
2022-10-26T17:13:32,326   src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:13:32,326    1294 |          (colJ[j].get_read_id() != -1) &&
2022-10-26T17:13:32,326         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:13:32,327   src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:13:32,327    1295 |          (colQ[i].get_read_id() != -1)) {
2022-10-26T17:13:32,327         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:13:32,331   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector<std::vector<Entry> >&, std::vector<unsigned int>&, std::vector<unsigned int>&, std::vector<Cost>&, const Pointer&, const Column&, std::vector<bool>&, const Counter&)’:
2022-10-26T17:13:32,331   src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:13:32,331    1350 |   if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1)
2022-10-26T17:13:32,331         |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:13:33,347   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/indexset.cpp -o build/temp.linux-armv7l-cpython-39/src/indexset.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:34,907   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigree.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigree.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:36,275   In file included from /usr/include/c++/10/cassert:44,
2022-10-26T17:13:36,275                    from src/pedigree.cpp:4:
2022-10-26T17:13:36,276   src/pedigree.cpp: In member function ‘void Pedigree::addIndividual(unsigned int, std::vector<Genotype*>, std::vector<PhredGenotypeLikelihoods*>)’:
2022-10-26T17:13:36,276   src/pedigree.cpp:32:26: warning: comparison of integer expressions of different signedness: ‘std::vector<Genotype*>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T17:13:36,276      32 |  assert(genotypes.size() == variant_count);
2022-10-26T17:13:36,276         |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2022-10-26T17:13:36,276   src/pedigree.cpp:33:37: warning: comparison of integer expressions of different signedness: ‘std::vector<PhredGenotypeLikelihoods*>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T17:13:36,276      33 |  assert(genotype_likelihoods.size() == variant_count);
2022-10-26T17:13:36,277         |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2022-10-26T17:13:36,285   src/pedigree.cpp: In member function ‘const Genotype* Pedigree::get_genotype_by_id(unsigned int, unsigned int) const’:
2022-10-26T17:13:36,286   src/pedigree.cpp:70:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
2022-10-26T17:13:36,286      70 |  assert(variant_index < variant_count);
2022-10-26T17:13:36,286         |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2022-10-26T17:13:36,286   src/pedigree.cpp: In member function ‘const PhredGenotypeLikelihoods* Pedigree::get_genotype_likelihoods_by_id(unsigned int, unsigned int) const’:
2022-10-26T17:13:36,286   src/pedigree.cpp:81:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
2022-10-26T17:13:36,287      81 |  assert(variant_index < variant_count);
2022-10-26T17:13:36,287         |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2022-10-26T17:13:36,298   src/pedigree.cpp: In member function ‘std::string Pedigree::toString() const’:
2022-10-26T17:13:36,299   src/pedigree.cpp:112:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
2022-10-26T17:13:36,299     112 |   for (size_t j=0; j<variant_count; ++j) {
2022-10-26T17:13:36,299         |                    ~^~~~~~~~~~~~~~
2022-10-26T17:13:38,538   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigreecolumncostcomputer.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigreecolumncostcomputer.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:40,250   src/pedigreecolumncostcomputer.cpp: In constructor ‘PedigreeColumnCostComputer::PedigreeColumnCostComputer(const std::vector<const Entry*>&, size_t, const std::vector<unsigned int>&, const Pedigree*, const PedigreePartitions&, bool)’:
2022-10-26T17:13:40,250   src/pedigreecolumncostcomputer.cpp:25:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:13:40,250      25 |  for (unsigned int i = 0; i < (1<<pedigree_partitions.count()); ++i) {
2022-10-26T17:13:40,251         |                           ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:13:40,286   src/pedigreecolumncostcomputer.cpp: In member function ‘std::vector<PedigreeColumnCostComputer::phased_variant_t> PedigreeColumnCostComputer::get_alleles()’:
2022-10-26T17:13:40,287   src/pedigreecolumncostcomputer.cpp:119:15: warning: unused variable ‘second_best_cost’ [-Wunused-variable]
2022-10-26T17:13:40,287     119 |  unsigned int second_best_cost = numeric_limits < unsigned int >::max();
2022-10-26T17:13:40,287         |               ^~~~~~~~~~~~~~~~
2022-10-26T17:13:41,406   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigreedptable.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigreedptable.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:47,697   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigreepartitions.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigreepartitions.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:49,573   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/phredgenotypelikelihoods.cpp -o build/temp.linux-armv7l-cpython-39/src/phredgenotypelikelihoods.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:51,152   In file included from /usr/include/c++/10/vector:72,
2022-10-26T17:13:51,152                    from src/genotype.h:4,
2022-10-26T17:13:51,152                    from src/phredgenotypelikelihoods.h:5,
2022-10-26T17:13:51,152                    from src/phredgenotypelikelihoods.cpp:4:
2022-10-26T17:13:51,153   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Genotype}; _Tp = Genotype; _Alloc = std::allocator<Genotype>]’:
2022-10-26T17:13:51,153   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Genotype>::iterator’ changed in GCC 7.1
2022-10-26T17:13:51,153     426 |       vector<_Tp, _Alloc>::
2022-10-26T17:13:51,153         |       ^~~~~~~~~~~~~~~~~~~
2022-10-26T17:13:51,185   /usr/include/c++/10/bits/vector.tcc: In member function ‘void PhredGenotypeLikelihoods::get_genotypes(std::vector<Genotype>&) const’:
2022-10-26T17:13:51,185   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Genotype*, std::vector<Genotype> >’ changed in GCC 7.1
2022-10-26T17:13:51,185     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2022-10-26T17:13:51,185         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:13:51,326   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/read.cpp -o build/temp.linux-armv7l-cpython-39/src/read.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:54,351   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/readset.cpp -o build/temp.linux-armv7l-cpython-39/src/readset.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:13:58,839   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/transitionprobabilitycomputer.cpp -o build/temp.linux-armv7l-cpython-39/src/transitionprobabilitycomputer.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:14:01,399   In file included from /usr/include/c++/10/vector:72,
2022-10-26T17:14:01,399                    from src/vector2d.h:5,
2022-10-26T17:14:01,399                    from src/transitionprobabilitycomputer.h:5,
2022-10-26T17:14:01,399                    from src/transitionprobabilitycomputer.cpp:1:
2022-10-26T17:14:01,399   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator<long double>]’:
2022-10-26T17:14:01,400   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long double, std::allocator<long double> >::iterator’ changed in GCC 7.1
2022-10-26T17:14:01,400     426 |       vector<_Tp, _Alloc>::
2022-10-26T17:14:01,400         |       ^~~~~~~~~~~~~~~~~~~
2022-10-26T17:14:01,442   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Genotype&}; _Tp = Genotype; _Alloc = std::allocator<Genotype>]’:
2022-10-26T17:14:01,443   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Genotype>::iterator’ changed in GCC 7.1
2022-10-26T17:14:01,919   /usr/include/c++/10/bits/vector.tcc: In constructor ‘TransitionProbabilityComputer::TransitionProbabilityComputer(size_t, unsigned int, const Pedigree*, const std::vector<PedigreePartitions*>&)’:
2022-10-26T17:14:01,919   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double, std::allocator<long double> > >’ changed in GCC 7.1
2022-10-26T17:14:01,919     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2022-10-26T17:14:01,920         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T17:14:01,921   In file included from /usr/include/c++/10/vector:67,
2022-10-26T17:14:01,922                    from src/vector2d.h:5,
2022-10-26T17:14:01,922                    from src/transitionprobabilitycomputer.h:5,
2022-10-26T17:14:01,922                    from src/transitionprobabilitycomputer.cpp:1:
2022-10-26T17:14:01,922   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Genotype*, std::vector<Genotype> >’ changed in GCC 7.1
2022-10-26T17:14:01,922    1198 |    _M_realloc_insert(end(), __x);
2022-10-26T17:14:01,922         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-10-26T17:14:02,697   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c whatshap/core.cpp -o build/temp.linux-armv7l-cpython-39/whatshap/core.o -std=c++11 -Werror=return-type -Werror=narrowing
2022-10-26T17:14:05,350   In file included from whatshap/core.cpp:839:
2022-10-26T17:14:05,350   whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’:
2022-10-26T17:14:05,351   whatshap/../src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable]
2022-10-26T17:14:05,351     145 |   Counter counter_columns;
2022-10-26T17:14:05,351         |           ^~~~~~~~~~~~~~~
2022-10-26T17:14:05,361   whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector<std::vector<Entry> >&, const Pointer&, const bool&)’:
2022-10-26T17:14:05,361   whatshap/../src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:14:05,361     208 |   return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1)));
2022-10-26T17:14:05,361         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:14:05,504   In file included from whatshap/core.cpp:839:
2022-10-26T17:14:05,505   whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector<bool>&, std::vector<bool>&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’:
2022-10-26T17:14:05,505   whatshap/../src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable]
2022-10-26T17:14:05,505     939 |    int old_k = k_j[input_pointer];
2022-10-26T17:14:05,505         |        ^~~~~
2022-10-26T17:14:05,523   whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::bitset<64> >&, std::vector<unsigned int>&, const bool&)’:
2022-10-26T17:14:05,523   whatshap/../src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:14:05,523    1114 |          (colJ[j].get_read_id() != -1) &&
2022-10-26T17:14:05,523         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:14:05,523   whatshap/../src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:14:05,523    1115 |          (colQ[i].get_read_id() != -1)) {
2022-10-26T17:14:05,524         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:14:05,525   whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’:
2022-10-26T17:14:05,525   whatshap/../src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:14:05,526    1159 |   while(cov < column.size() && column[cov].get_read_id() != -1) {
2022-10-26T17:14:05,526         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:14:05,530   whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’:
2022-10-26T17:14:05,530   whatshap/../src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:14:05,531    1294 |          (colJ[j].get_read_id() != -1) &&
2022-10-26T17:14:05,531         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:14:05,531   whatshap/../src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:14:05,531    1295 |          (colQ[i].get_read_id() != -1)) {
2022-10-26T17:14:05,531         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:14:05,534   whatshap/../src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector<std::vector<Entry> >&, std::vector<unsigned int>&, std::vector<unsigned int>&, std::vector<Cost>&, const Pointer&, const Column&, std::vector<bool>&, const Counter&)’:
2022-10-26T17:14:05,534   whatshap/../src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T17:14:05,534    1350 |   if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1)
2022-10-26T17:14:05,534         |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2022-10-26T17:14:05,659   In file included from whatshap/../src/polyphase/haplothreader.h:4,
2022-10-26T17:14:05,659                    from whatshap/core.cpp:844:
2022-10-26T17:14:05,659   whatshap/../src/polyphase/tuple.h: At global scope:
2022-10-26T17:14:05,659   whatshap/../src/polyphase/tuple.h:26:50: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,660      26 |         31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35,
2022-10-26T17:14:05,660         |                                             ~~~~~^~~~~
2022-10-26T17:14:05,660   whatshap/../src/polyphase/tuple.h:27:14: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,660      27 |         31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55};
2022-10-26T17:14:05,660         |         ~~~~~^~~~~
2022-10-26T17:14:05,660   whatshap/../src/polyphase/tuple.h:27:26: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,660      27 |         31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55};
2022-10-26T17:14:05,661         |                     ~~~~~^~~~~
2022-10-26T17:14:05,661   whatshap/../src/polyphase/tuple.h:27:38: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,661      27 |         31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55};
2022-10-26T17:14:05,661         |                                 ~~~~~^~~~~
2022-10-26T17:14:05,661   whatshap/../src/polyphase/tuple.h:27:50: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,661      27 |         31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55};
2022-10-26T17:14:05,661         |                                             ~~~~~^~~~~
2022-10-26T17:14:05,662   whatshap/../src/polyphase/tuple.h:26:50: error: right operand of shift expression ‘(31 << 35)’ is greater than or equal to the precision 32 of the left operand [-fpermissive]
2022-10-26T17:14:05,662      26 |         31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35,
2022-10-26T17:14:05,662         |                                             ~~~~~^~~~~
2022-10-26T17:14:05,695   In file included from whatshap/core.cpp:845:
2022-10-26T17:14:05,695   whatshap/../src/polyphase/switchflipcalculator.h:31:14: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,695      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2022-10-26T17:14:05,695         |         ~~~~~^~~~~
2022-10-26T17:14:05,695   whatshap/../src/polyphase/switchflipcalculator.h:31:26: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,696      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2022-10-26T17:14:05,696         |                     ~~~~~^~~~~
2022-10-26T17:14:05,696   whatshap/../src/polyphase/switchflipcalculator.h:31:38: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,696      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2022-10-26T17:14:05,696         |                                 ~~~~~^~~~~
2022-10-26T17:14:05,696   whatshap/../src/polyphase/switchflipcalculator.h:31:50: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,696      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2022-10-26T17:14:05,697         |                                             ~~~~~^~~~~
2022-10-26T17:14:05,697   whatshap/../src/polyphase/switchflipcalculator.h:32:14: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,697      32 |         15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60
2022-10-26T17:14:05,697         |         ~~~~~^~~~~
2022-10-26T17:14:05,697   whatshap/../src/polyphase/switchflipcalculator.h:32:26: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,697      32 |         15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60
2022-10-26T17:14:05,697         |                     ~~~~~^~~~~
2022-10-26T17:14:05,698   whatshap/../src/polyphase/switchflipcalculator.h:32:38: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,698      32 |         15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60
2022-10-26T17:14:05,698         |                                 ~~~~~^~~~~
2022-10-26T17:14:05,698   whatshap/../src/polyphase/switchflipcalculator.h:32:50: warning: left shift count >= width of type [-Wshift-count-overflow]
2022-10-26T17:14:05,698      32 |         15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60
2022-10-26T17:14:05,698         |                                             ~~~~~^~~~~
2022-10-26T17:14:05,698   whatshap/../src/polyphase/switchflipcalculator.h:31:14: error: right operand of shift expression ‘(15 << 32)’ is greater than or equal to the precision 32 of the left operand [-fpermissive]
2022-10-26T17:14:05,698      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2022-10-26T17:14:05,699         |         ~~~~~^~~~~
2022-10-26T17:14:05,984   whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_15PedigreeDPTable_4get_super_reads(__pyx_obj_8whatshap_4core_PedigreeDPTable*)’:
2022-10-26T17:14:05,984   whatshap/core.cpp:8943:33: warning: comparison of integer expressions of different signedness: ‘std::vector<ReadSet*>::size_type’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2022-10-26T17:14:05,984    8943 |   for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2022-10-26T17:14:05,984         |                       ~~~~~~~~~~^~~~~~~~~~~
2022-10-26T17:14:06,236   whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_11HapChatCore_6get_super_reads(__pyx_obj_8whatshap_4core_HapChatCore*)’:
2022-10-26T17:14:06,237   whatshap/core.cpp:14832:33: warning: comparison of integer expressions of different signedness: ‘std::vector<ReadSet*>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T17:14:06,237   14832 |   for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
2022-10-26T17:14:06,237         |                       ~~~~~~~~~~^~~~~~~~~~~
2022-10-26T17:14:08,139   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2022-10-26T17:14:08,321   ERROR: [present-rich] Building wheel for whatshap (pyproject.toml) exited with 1
2022-10-26T17:14:08,340   [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpf2uxhi9_[/]
2022-10-26T17:14:08,340   [bold magenta]cwd[/]: /tmp/pip-wheel-5eq2x2v5/whatshap_402d3f4218d24c0c8c8f4693153a7bb6
2022-10-26T17:14:08,340   Building wheel for whatshap (pyproject.toml): finished with status 'error'
2022-10-26T17:14:08,343   ERROR: Failed building wheel for whatshap
2022-10-26T17:14:08,345 Failed to build whatshap
2022-10-26T17:14:08,346 ERROR: Failed to build one or more wheels
2022-10-26T17:14:08,347 Exception information:
2022-10-26T17:14:08,347 Traceback (most recent call last):
2022-10-26T17:14:08,347   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
2022-10-26T17:14:08,347     status = run_func(*args)
2022-10-26T17:14:08,347   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
2022-10-26T17:14:08,347     return func(self, options, args)
2022-10-26T17:14:08,347   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 201, in run
2022-10-26T17:14:08,347     raise CommandError("Failed to build one or more wheels")
2022-10-26T17:14:08,347 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2022-10-26T17:14:08,352 Removed build tracker: '/tmp/pip-build-tracker-1gyd8scy'