2022-10-26T21:30:18,982 Created temporary directory: /tmp/pip-ephem-wheel-cache-ul2xndqw
2022-10-26T21:30:18,987 Created temporary directory: /tmp/pip-build-tracker-d9eqm77j
2022-10-26T21:30:18,988 Initialized build tracking at /tmp/pip-build-tracker-d9eqm77j
2022-10-26T21:30:18,989 Created build tracker: /tmp/pip-build-tracker-d9eqm77j
2022-10-26T21:30:18,989 Entered build tracker: /tmp/pip-build-tracker-d9eqm77j
2022-10-26T21:30:18,991 Created temporary directory: /tmp/pip-wheel-15msvlp8
2022-10-26T21:30:18,999 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-26T21:30:19,004 Created temporary directory: /tmp/pip-ephem-wheel-cache-blfrio3k
2022-10-26T21:30:19,060 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-26T21:30:19,068 2 location(s) to search for versions of pyhmmer:
2022-10-26T21:30:19,068 * https://pypi.org/simple/pyhmmer/
2022-10-26T21:30:19,068 * https://www.piwheels.org/simple/pyhmmer/
2022-10-26T21:30:19,069 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/
2022-10-26T21:30:19,070 Getting page https://pypi.org/simple/pyhmmer/
2022-10-26T21:30:19,074 Found index url https://pypi.org/simple
2022-10-26T21:30:19,278 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json
2022-10-26T21:30:19,493   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/24/b9adc93653b83e3aa333588f8fe80cf6a058b97497a1a722e7a2cf5bc5b3/pyhmmer-0.1.0a1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,494   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/5a/594c4415860394f14b94137e10f3b6264fbd452a9ed00371fef870bdd68e/pyhmmer-0.1.0a1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,495   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2f/fe/4cf2fc8c5eb288fc72cbbc151d6da1b6f6e73fcba66842ed40532069902d/pyhmmer-0.1.0a1-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,495   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/c9/3f46d702c63e188539c28555af361e58ead4bff416799042c5ecf97805cb/pyhmmer-0.1.0a1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,496   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/12/f5d1ef8114cc5e0ab890d562768e9a6eb253b3e3bf258f8105c1d1841c73/pyhmmer-0.1.0a1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,497   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/b6/b92f44fcc712bc3dd621eccefe34d569a17f0ae73133f352a47fb2029c44/pyhmmer-0.1.0a1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,497   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/b6/0ca49ee6803d761eefc93528e9e8106151e06acf77ba9f669275c01863ac/pyhmmer-0.1.0a1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,498   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/0d/e2e21b3925af6887baf35a3e8993b5fe4863d93638138e7d5f236bcf2197/pyhmmer-0.1.0a1-cp38-cp38-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,498   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/3d/aac55b3f74ecd81ff3f619083c277ba40df45d8e6b8fc19d58eb74fab09b/pyhmmer-0.1.0a1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,499   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/cc/11cb714fad98ed3c1689ce83a31a29d744ed34c822af3ae63b2450e6b159/pyhmmer-0.1.0a1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,500   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/39/ca6e515c639a28632e52579a75aabe22d6bf2fe2a66cb2bd407fea81a1fe/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,500   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/)
2022-10-26T21:30:19,501   Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1
2022-10-26T21:30:19,502   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,502   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/a8/b31471655d0f09813748c9d8888587e3a1e1573f0c01c748676d03cc3c51/pyhmmer-0.1.0a2-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,503   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/1f/4b3aef73b2a9d4e07d56700a1a11794e6c92dd9018c1008b53e6c0e903ca/pyhmmer-0.1.0a2-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,504   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/83/a386d9e2350ec96fe9d0c6d8c274c72afda82745e5586926966b0c8e678f/pyhmmer-0.1.0a2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,504   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/24/aaa2a74692ac30b32f7da206479021eb206ea6e7dbb7023ad8bae97db1a4/pyhmmer-0.1.0a2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,505   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/4a/d1cba5443443544a77b200f47f2ba3ab679ef974bbf51dbfefde401902f0/pyhmmer-0.1.0a2-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,505   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/bf/a7d9c65a9c2660474ad72338ca47427f6f78e6ad378026edf2fdce3019f2/pyhmmer-0.1.0a2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,506   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,506   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,507   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,508   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/d7/a10594b0c3bac79e2526c5659789b38cd98675cf8bc600c7c386482f40ad/pyhmmer-0.1.0a2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,508   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/f8/e76e388294f53736440bf078f3e6d407625ab53077c8da0a80c776aaf5de/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,509   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/94/945c8e50db0e658ccbda8abb26a0becd29e414bbfc9a2aa0a07329ac86b4/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,510   Found link https://files.pythonhosted.org/packages/a9/d8/7d1a3e189d29f5f57cfc2b5706e46d9c593228316d88d9791e4b6deaf818/pyhmmer-0.1.0a2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a2
2022-10-26T21:30:19,511   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/dd/ffe938b4db1f8230060a11a725500da00678d2431552685541e49f56a1cd/pyhmmer-0.1.0a3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,512   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0e/8634c98e9bb007edb4d9b0504cd2325f0db0303124c2285405f422d48d60/pyhmmer-0.1.0a3-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,512   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ac/a6/5d0240be2817e6b3c876493903fdf300a05a4d27ab4ce3e71a86bb4e6e47/pyhmmer-0.1.0a3-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,513   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,513   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,514   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,514   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/42/e3/1ae53fd316b2f4d952c9cc566068781a0e0bd676e741f328ae2c902d1490/pyhmmer-0.1.0a3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,515   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/8fa3f99cb062863c91e73654f21024373cae0187e5e3476275c1cf9d06f5/pyhmmer-0.1.0a3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,516   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/67/4cb6f3ff89e47e060598f940d771799fdd7b1427544cd8da94ce895e9e4f/pyhmmer-0.1.0a3-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,516   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/61/e5f4b60a3ea29110b78672a95dac9bc165727c96732e34868f249e3422e1/pyhmmer-0.1.0a3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,517   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/37/df/8c9ccb8baeec522b05e956beaf899596ada02a3b383dc7a8d259b69e825b/pyhmmer-0.1.0a3-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,518   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/78/7cd9016de0f1aa1ee2da0200224cb886959e62cb97c933553cdc7fd2560f/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,518   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/2a/abf43d38a2414b719e57bf5c5edb0803179f6d0e6a16fc2eed28cc77b6f5/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,520   Found link https://files.pythonhosted.org/packages/54/29/75df6ece9030041c44fff57220bf48950d4c653ddca7e02a54d4d5fc21cc/pyhmmer-0.1.0a3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a3
2022-10-26T21:30:19,520   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/0b/15f39d875ef0cbadfd3b069916f632409989918429ec2604eec53cd7e448/pyhmmer-0.1.0a4-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,521   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/48/3c/336700ba033d737f5e839fd63e3f0aa4946a66870f7d54f3825ac34c1a95/pyhmmer-0.1.0a4-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,522   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e2/af/ed96bc98aa7c04aa0c1ecdc7bc2ff90a6fde3d4f323c23509e56a205d93d/pyhmmer-0.1.0a4-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,522   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/6e/4829b621577195c923ae8bf3efa95925bcb93478bee8938818043597c926/pyhmmer-0.1.0a4-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,523   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/90/3f2cc3b8d0d2400b4cb21655f124b1704f0b71b05a0680f6671b19ec566c/pyhmmer-0.1.0a4-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,524   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/bc625da5fac25a825470749a1a0465f15cceb4c702cb9efd8b69e76de5e7/pyhmmer-0.1.0a4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,524   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4c/35/22c6cb71edfcb82ef9d649d3adb11574f1f1ec930491242295c3916e7572/pyhmmer-0.1.0a4-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,525   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/c7/3366cd7f01c8a50a9952c1d876141630de3d6b68d4bd2067b17b121921af/pyhmmer-0.1.0a4-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,525   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/96/ab/547d16b731200d26c3295f6ae6192d6d6115d613dd3787ea0f8978478bde/pyhmmer-0.1.0a4-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,526   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/73/e4/2e4a8bc0edf07188d51fcd3b1ff17cce3efa831f76e6e16b84df1cfd3cde/pyhmmer-0.1.0a4-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,526   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/64/14e6ba3b80de2a4bcbfff2f876cc9b04151570d88e91d5a6496052e33072/pyhmmer-0.1.0a4-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
2022-10-26T21:30:19,527   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1b/9a/288358a8964913e26cc5d10e5e5a4ec01b72a33d1072d8f4c1423d24e643/pyhmmer-0.1.0a4-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5)
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2022-10-26T21:30:19,612   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b4/ab/0d6313332333d9104d39748c1fbdbb312fd3a3cc9f871b4f7bbea4dc5eb8/pyhmmer-0.3.0-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,613   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/84/801ca5f828500d3825b066c8006d6b501d67d57d43f1c8d95c62fb72ed21/pyhmmer-0.3.0-pp36-pypy36_pp73-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,619   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5b/ec/8fc61155ad090117ec91574677ffe7be2540b8ac1eda05aac39b04b2baf7/pyhmmer-0.3.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,620   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b6/2f/ed4c88a0ff74bce8781ecc75dd6d34d6d6c4f7dbb6f8fc7538812fb1bcb8/pyhmmer-0.3.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,621   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/74/ba/2071d1002491f10b45fe057f8707b7f879546443a18ed0acb9a9486d3033/pyhmmer-0.3.1-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,621   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e3/1c/ac254f0a00b9739d4587df65f030cd15783f57feb996470cd4664e24e8b2/pyhmmer-0.3.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,622   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8d/fb/d87f9c26a4b58ea330e7936c4f59f0d8ecfdbc1e76aed60eaf5dd29f04ba/pyhmmer-0.3.1-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,623   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/57/15/82f4a4b0da12cdf0d044b6624cefa7cf563a60666a81196050b9f098df71/pyhmmer-0.3.1-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,623   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f9/c6/3990e6ea23334f641730885bcdd1a2f304a2149d9f4f6f64654de88a4693/pyhmmer-0.3.1-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,624   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e3/8e/9bb0b9dc14993637bf411158a8a74498ab297d9207b27163b88025846d10/pyhmmer-0.3.1-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,627   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/05/7fb226eb9c2131dd60bd56f0077e006a4e51da51272d92163b62ca4f8eea/pyhmmer-0.4.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,627   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b8/47/dab7312b5280c80fbac69470200fbbae5056dfb4db0fa460d4624f8530ab/pyhmmer-0.4.0-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,629   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/55/929caad4036f3d97abd41694b19b773313afa4fe6bece2619bcd6cf81917/pyhmmer-0.4.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,631   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9f/f8/5d58d4f3f80c970010aea222b958c3f2e04a970c0573aa675fa805394f5a/pyhmmer-0.4.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,646   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/aa/09b2d512f1b75ed279317eba38e320204f0cfa49094f83211aede16286ce/pyhmmer-0.4.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,646   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/21/3a09a81de850eb81ab720eb05bb1d1362070b1cbbc6a6b7b1edf701920d4/pyhmmer-0.4.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,647   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/43/19411901fe99dd7038ebb98fabd2b79062b2944bec551d0b06bd9909adc4/pyhmmer-0.4.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,647   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/15/c9/ffa040555c4ae3673221436506c8c272c22a53bd9e6a54efe0157d9c2972/pyhmmer-0.4.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,648   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cb/06/a2fc008cfdd553285325cf8373f3b6af85bb7cac0e294f45948bf1f282aa/pyhmmer-0.4.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,648   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/dc/0ed9ba672cc508bc15b4faf62a6444434e824ded77cfaf60662d90cb9601/pyhmmer-0.4.2-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,649   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9c/5e/212fe49995ccad358150012abf2da8ffbc25f024436b6fdcc89173e95b32/pyhmmer-0.4.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,650   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/9e/486d5da6d404842d00eabfbb1d7a25ffc0c49503dd7d267f1a6a701840e5/pyhmmer-0.4.2-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,650   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/88/b8bb0c20875f4638bb7d600c4c3dc65eb742b3a9833c730aa4915e94aa9a/pyhmmer-0.4.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,653   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/50/caff34277134400d58687859f224f34e88a6aa7abc6b3371150c3997f7a1/pyhmmer-0.4.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,654   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c6/43/726fc37dd0ece9c81780c9e29b90be4493693f4c6e8edde68b3cf8189125/pyhmmer-0.4.3-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,654   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bf/5f/6a88535a37b4de01584d62e008fb415adbe3f1440950dabba648943aa3c1/pyhmmer-0.4.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,655   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/6c/ec2ff99e8dc22520805ecf43ff22369a1ca0228cbd6fabfc3de0d7695481/pyhmmer-0.4.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,656   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/9a/8df126ab5ccf2278e9b3414c26f53bf01b480164abcc11c9d2d56d9f67f4/pyhmmer-0.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,656   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2d/63/9e0ac76ca6baae6f288983a7af56de078773b5c0d61004419d1319197f61/pyhmmer-0.4.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,657   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/30/05d945cce1855035b4bb78996bac7ce0e371e2dc82b186147e36d551e1d0/pyhmmer-0.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,657   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/94/cacfb35c7ee944e9b9dac2ba8ef20cc192958cdbf1e4e223783152251a7b/pyhmmer-0.4.3-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,658   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/ba/e2347228e6bc83d22820f46bf33ed8558ce1128a60128edd2b9bd770078e/pyhmmer-0.4.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,659   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/9a/d5447b14a91a994bd2ec38a1a4880c29c93bce74e1aa7a328a794901a870/pyhmmer-0.4.3-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,659   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/eb/87/8074c4e8896b87ef161b2490f525315f70c4783e567cfc15679bdab1f059/pyhmmer-0.4.3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,663   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,663   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/07/f0/066382b4d9e67ee4df32b0ea99a0d499739b31375505b28d87efbef0d7ce/pyhmmer-0.4.4-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,664   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/aa/2be9a4c359b3cde19a49800e85813b5f18f1116c5f7fb828f12f2b3d6102/pyhmmer-0.4.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,664   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/c7/d1adec561776afaf05b52a9316b4cf7922497052c82042d4c7ec790c7c96/pyhmmer-0.4.4-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,667   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6f/02/c2ac022076a9b264f91a0f7e6b08a89934d5e1435943cb8b39304cdb7447/pyhmmer-0.4.4-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,668   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/91/78/eefaf55976164ad3550c2f76c6e9c732d79b7c68e1abbbfa98646d756a86/pyhmmer-0.4.4-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,682   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/2e/efbfaaabf781ffd21b425c7cbe4dca8215c22388213aeec10b953c320cc3/pyhmmer-0.4.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,682   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/bc/1a349bbc9da921811a3c5f385dcb25819223672145a033539eb8acfa762e/pyhmmer-0.4.6-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,683   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/b6/432a099063555660c698ddf22c27a9f0e253ea7bf0b357dbcf9deb53f552/pyhmmer-0.4.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,683   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/57/9941d06a569a34685928406e5b5d47819417a2379a26233437ca53a3484e/pyhmmer-0.4.6-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,684   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/87/171796b7139a8a44ba960344487f474d65bb5f16c21a088bede3d3cdec33/pyhmmer-0.4.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,684   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/b0/5d0f1b002f50fc531485e8691224de277d329d293bde922a35f4659e73b8/pyhmmer-0.4.6-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,685   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,686   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,686   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,689   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,690   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/fc/d9b9efcc7b21381a3fa0c4b83e083c9d0b406868846054b989d105c301c8/pyhmmer-0.4.7-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,690   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d8/6f/d70ebea12581688dbcf180b983186e3d3a8ad2325cc8691c837276bb3e67/pyhmmer-0.4.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,691   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/35/0c72fb32b8c75526ca61e74b835254a36a377ca9f7d53f33c607f7fb27a6/pyhmmer-0.4.7-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,691   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/c1/9f98c0bc9356578c3c4b14fd45a738acae7f7940a8ddc8342a8632734a3f/pyhmmer-0.4.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,692   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/1a/9605d23785ef8dbed1109f79c3797d2e417bda20e9207a4c8156609c808c/pyhmmer-0.4.7-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,692   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/28/1373677589c6dff86a9c29c5340ce8f17fea4163530ad63d8c2a4a54141f/pyhmmer-0.4.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,693   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/20/89/62ec67b2d2c1b17a61c6ac8458eb95c31f28da3c69920fece52325ce6a6f/pyhmmer-0.4.7-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,693   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bd/1e/dedaa65e0af9d9e0e2e3524fed5730187f0241d75ae14a30c537aa0b06fc/pyhmmer-0.4.7-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,694   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/45/d5bc13839408fcd2026afeef68619db2ea343d3a9add651214c37fde69b4/pyhmmer-0.4.7-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,695   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/04/036c8ea00e8388dba6b116f4914df1065d7856f786d5c6458a1bd1ec6576/pyhmmer-0.4.7-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,698   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5c/35/02845b5af76b67f8a7d0703f049793aba99d5323cc05851c7dfd32e59145/pyhmmer-0.4.8-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,698   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/5d/bd3895ebf5d0c21e5576e046cb295b3832174b93cdd7affa2c965eb72002/pyhmmer-0.4.8-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,699   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/87/e9/d607ccdc5e57e8bfdaf1eec1fe51bd434eb57fe61fb80d60236519ee4162/pyhmmer-0.4.8-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,701   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/62/ec/918058530f70ad9b58ec9dc1638115362f59cfb9f5ad584732fe290b8dbb/pyhmmer-0.4.8-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,701   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5b/42/4a8ec9fdb0e57cddff194646e62360e73f6a57a3d339095df6572af0f935/pyhmmer-0.4.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,702   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/68/8c577f9574bed3ac3017a76bf487b76b80c784163a9ddf15e14db3a84adc/pyhmmer-0.4.8-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,703   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/40/22/099da301d77a3f512bde56a54fa5272e937818843f8be96aa46089071f4f/pyhmmer-0.4.8-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,717   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/ac/2db59c94139155e1241fabf650a8f30b238a68d13ca40014a75aece65b74/pyhmmer-0.4.10-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,718   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/06/ad/aaeafd77e0037312873a136a3c2165a5eab10ae37f56cb60b8c6de7442b4/pyhmmer-0.4.10-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,719   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/87/24601e2b81fedba09b3a003fd1e4fe78c8cd252767663acd9dbc63d1784d/pyhmmer-0.4.10-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,719   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,721   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,721   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,722   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,722   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,724   Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10
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2022-10-26T21:30:19,725   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,726   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/76/0ae3492a40179ac43d453b37b8a3d19bd58c3ca762013eca94aeb9592873/pyhmmer-0.4.11-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,727   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b4/dd/1f02cbf6cda0a82564cab00b63fba1904fc98be1db7c09e8eb2084b322d6/pyhmmer-0.4.11-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,727   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/3d/c2ca1d16803049f2917027ff4b05dc7b635757829f9c7288114edd73516a/pyhmmer-0.4.11-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,728   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/9b/dc1fc0f379310382669aad49b6281cf3703f46662fc8d968b0b9ca0d7e8c/pyhmmer-0.4.11-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,729   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5c/54/4cba0bf00660fb32bc4e76006a76b20eaa4f694f49f37994995c6b0a4e1e/pyhmmer-0.4.11-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,730   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f9/71/f2d8518120e117fdb842d13e7714678c40692bf60bce01e54c883625a1f1/pyhmmer-0.4.11-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,730   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a3/91/02307afd6d26f1423cfd8f46dd4b070a7e4c84ad6d00524e5f86f22e5fab/pyhmmer-0.4.11-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,731   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/87/c0e6ce633d6649cae526c23260219fb911e2c3da891eb2485a5b6b8e6cb7/pyhmmer-0.4.11-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,731   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/d7/a415042ae43b7a13fbcd1a3295a8b8189029e7baeede92ab82ce597db36e/pyhmmer-0.4.11-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,732   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9f/5f/1fd5587437c9e6331fe7a1d85d11d1e7d71fd21e068d1f0800c30bd2d0ec/pyhmmer-0.4.11-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,734   Found link https://files.pythonhosted.org/packages/65/f3/1de70443d58ccf843aaaa01393d640452e26b60912c0998302a0b8fea021/pyhmmer-0.4.11.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.11
2022-10-26T21:30:19,734   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/90/24/136abcb4ad189a00cb41409d3887d892a8764231aa863c0e9d181952c989/pyhmmer-0.5.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,735   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/97/5a/9983f2ef20d457d0065c12d96103c9ff25581089fc29478f2d387ede8007/pyhmmer-0.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,736   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/18/55/361aa005346f7810a9d2daf9a25eb8bc4cc5352bd8ff0cb9e25caee1c3f4/pyhmmer-0.5.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,736   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/ab/d4ac37a66e6344b641cc4f5bf6a99f55a9a4f1424a63a214a7862086628e/pyhmmer-0.5.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,738   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/d4/231efd3e3d8130f57875939fa9cb21160b8edc51f1749eb989673c9921b4/pyhmmer-0.5.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,738   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/1c/5118252d96ee71ccad56ad081fcff29e7af31ea85b9e94b97911df3db5e3/pyhmmer-0.5.0-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,739   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b3/e2/9bdf705fc5813f94d82ab2dc71ee9f07724caa43629235a845bc6120b5cc/pyhmmer-0.5.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,739   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/20/0926ec071a4373f167f1c3265c1fe4d2ace1d71e85e6b37bd8a66dd31925/pyhmmer-0.5.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,740   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/15/f3b826ba98bfbc9386e628d9b6fa5237a0e761274a1e84a6e1042fa55784/pyhmmer-0.5.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,741   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/66/e6/77a0ac512c431181dcb2ea9d41912a09518dd4514689bcf035a31576e479/pyhmmer-0.5.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,742   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/8e/3030e8640238fe995a33b34bbcf073e3c37859cb8cddab5badde1c9f698d/pyhmmer-0.5.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,743   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f7/37/f35d1b12f6758bcee4c013957c23e7719e1db5795f37bf64e4367b9992b8/pyhmmer-0.5.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,746   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/24/ff258c00e8a3d8f9d0f3a34f32f3405bee99ef0339a6fc4d529b6970cc49/pyhmmer-0.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,748   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/aa/cb/e9b4113ab1049e1f13828043ee41dec823111fa0d1ba95b8ed17aa2479da/pyhmmer-0.6.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,753   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/e9/3a1f5a5aa46b482a3bca632fff9cb173c91ba5f02a96a3f5c0d730660519/pyhmmer-0.6.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,753   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7b/72/119583107572a60f86e0f8578a7bf5d03928eeb3107d3e469336c5c41245/pyhmmer-0.6.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,754   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/8d/2743d1944b793b1182955de2143776ec786c239e6c69fb8da18fb4db17ed/pyhmmer-0.6.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,754   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5b/e5/7dae65e0e3f3724535d49307db46975b4eb1bc62cc77a1b2dd26ddc308a9/pyhmmer-0.6.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,759   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/34/aaa3d15ef7bd33ef7e8eb8a92ac49e975355f708448e88fe4af98909e4fc/pyhmmer-0.6.1-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,761   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6d/c0/91f4f28744b8b7f90f729b3f06b2732ce1c6fb354e6643585f4d5b9fc5ee/pyhmmer-0.6.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,762   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e2/64/f3503102d6a0127a703b6730c8c6512dd0a1b2f4616453194ec3e6552797/pyhmmer-0.6.1-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,763   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/46/4fa17c338e3db5820ca0c98ffe41c69dae85eb96372e333504b9d780bd70/pyhmmer-0.6.1-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,764   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/27/82/c9dbdf556c27204f3c7452f3dc6360b3d6a5a7a9d139a6dab992a0a33af6/pyhmmer-0.6.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,764   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/00/ba/e4a5a835581363c1a6809656518b2b5bf2b668d0cc8bba6a91aaab864023/pyhmmer-0.6.1-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,765   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/60/bd4cf94201733ee99960638e205d34547e1814a7fb95d2d5fc84df6c6423/pyhmmer-0.6.1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,766   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/09/be194e9996ce5b9b250af009792194de38d5f38537a07b787d77bd7c2020/pyhmmer-0.6.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,767   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7d/6b/d6adf535b346904db4dad94b57101d495fcb2a1ba2b0cb9a2b9b5c11aee4/pyhmmer-0.6.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,771   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f9/72faeef1934a86623f8720070d2bfcd4518492e95d6afedf7cb093f06b9c/pyhmmer-0.6.2-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,771   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/f2/bd50114e9224a290b2a68c9651b9e35a950656a6829307a1a4a432fd45be/pyhmmer-0.6.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,772   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/66/b1/957e1be040cd2b5778941c9a4b8caf283e328dc4608c61b54dc4f44dd677/pyhmmer-0.6.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,774   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/b8/a5edf3701cb051f9b8f397cc0ad5312bad4eb6eb761c99ec294b21c922f7/pyhmmer-0.6.2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,775   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,775   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,776   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,777   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,777   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
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2022-10-26T21:30:19,788   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,788   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/d4/c43a67e5b31e63a52e7a4204502adf4e43e7c3d5b2f453789d73935dd027/pyhmmer-0.6.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,789   Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6)
2022-10-26T21:30:19,790   Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3
2022-10-26T21:30:19,791 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/
2022-10-26T21:30:19,792 Getting page https://www.piwheels.org/simple/pyhmmer/
2022-10-26T21:30:19,794 Found index url https://www.piwheels.org/simple
2022-10-26T21:30:22,038 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html
2022-10-26T21:30:22,041 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/
2022-10-26T21:30:22,042 Skipping link: not a file: https://pypi.org/simple/pyhmmer/
2022-10-26T21:30:22,099 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates
2022-10-26T21:30:22,138 Collecting pyhmmer==0.6.3
2022-10-26T21:30:22,143   Created temporary directory: /tmp/pip-unpack-7xrf57yx
2022-10-26T21:30:23,163   Downloading pyhmmer-0.6.3.tar.gz (9.9 MB)
2022-10-26T21:30:32,618   Added pyhmmer==0.6.3 from https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz to build tracker '/tmp/pip-build-tracker-d9eqm77j'
2022-10-26T21:30:32,628   Created temporary directory: /tmp/pip-build-env-yd1v2_wt
2022-10-26T21:30:32,640   Installing build dependencies: started
2022-10-26T21:30:32,642   Running command pip subprocess to install build dependencies
2022-10-26T21:30:35,618   Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7)
2022-10-26T21:30:36,420   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-26T21:30:36,481   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-26T21:30:40,817   Collecting setuptools>=46.4
2022-10-26T21:30:41,105     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB)
2022-10-26T21:30:45,132   Collecting cython~=0.29.16
2022-10-26T21:30:45,645     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp37-cp37m-linux_armv7l.whl (2.3 MB)
2022-10-26T21:30:50,886   Installing collected packages: setuptools, cython
2022-10-26T21:31:02,546     Creating /tmp/pip-build-env-yd1v2_wt/overlay/bin
2022-10-26T21:31:02,551     changing mode of /tmp/pip-build-env-yd1v2_wt/overlay/bin/cygdb to 755
2022-10-26T21:31:02,556     changing mode of /tmp/pip-build-env-yd1v2_wt/overlay/bin/cython to 755
2022-10-26T21:31:02,561     changing mode of /tmp/pip-build-env-yd1v2_wt/overlay/bin/cythonize to 755
2022-10-26T21:31:02,615   Successfully installed cython-0.29.32 setuptools-65.5.0
2022-10-26T21:31:03,237   Installing build dependencies: finished with status 'done'
2022-10-26T21:31:03,251   Getting requirements to build wheel: started
2022-10-26T21:31:03,254   Running command Getting requirements to build wheel
2022-10-26T21:31:06,320   pyHMMER is not supported on CPU architecture: 'armv7l'
2022-10-26T21:31:06,555   Getting requirements to build wheel: finished with status 'done'
2022-10-26T21:31:06,594   Installing backend dependencies: started
2022-10-26T21:31:06,597   Running command pip subprocess to install backend dependencies
2022-10-26T21:31:09,688   Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7)
2022-10-26T21:31:10,503   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-26T21:31:10,569   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-26T21:31:12,571   Collecting wheel
2022-10-26T21:31:12,624     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-10-26T21:31:19,082   Installing collected packages: wheel
2022-10-26T21:31:19,529     Creating /tmp/pip-build-env-yd1v2_wt/normal/bin
2022-10-26T21:31:19,535     changing mode of /tmp/pip-build-env-yd1v2_wt/normal/bin/wheel to 755
2022-10-26T21:31:19,573   Successfully installed wheel-0.37.1
2022-10-26T21:31:20,299   Installing backend dependencies: finished with status 'done'
2022-10-26T21:31:20,306   Created temporary directory: /tmp/pip-modern-metadata-muso90vd
2022-10-26T21:31:20,316   Preparing metadata (pyproject.toml): started
2022-10-26T21:31:20,319   Running command Preparing metadata (pyproject.toml)
2022-10-26T21:31:24,628   running dist_info
2022-10-26T21:31:24,688   creating /tmp/pip-modern-metadata-muso90vd/pyhmmer.egg-info
2022-10-26T21:31:24,712   writing /tmp/pip-modern-metadata-muso90vd/pyhmmer.egg-info/PKG-INFO
2022-10-26T21:31:24,721   writing dependency_links to /tmp/pip-modern-metadata-muso90vd/pyhmmer.egg-info/dependency_links.txt
2022-10-26T21:31:24,742   writing requirements to /tmp/pip-modern-metadata-muso90vd/pyhmmer.egg-info/requires.txt
2022-10-26T21:31:24,745   writing top-level names to /tmp/pip-modern-metadata-muso90vd/pyhmmer.egg-info/top_level.txt
2022-10-26T21:31:24,750   writing manifest file '/tmp/pip-modern-metadata-muso90vd/pyhmmer.egg-info/SOURCES.txt'
2022-10-26T21:31:24,956   reading manifest file '/tmp/pip-modern-metadata-muso90vd/pyhmmer.egg-info/SOURCES.txt'
2022-10-26T21:31:24,966   reading manifest template 'MANIFEST.in'
2022-10-26T21:31:27,187   pyHMMER is not supported on CPU architecture: 'armv7l'
2022-10-26T21:31:27,188   warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
2022-10-26T21:31:27,192   warning: no previously-included files matching '*.pl' found under directory 'vendor'
2022-10-26T21:31:27,196   no previously-included directories found matching 'vendor/easel/demotic'
2022-10-26T21:31:27,200   no previously-included directories found matching 'vendor/easel/documentation'
2022-10-26T21:31:27,204   no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
2022-10-26T21:31:27,209   no previously-included directories found matching 'vendor/easel/miniapps'
2022-10-26T21:31:27,215   no previously-included directories found matching 'vendor/easel/testsuite'
2022-10-26T21:31:27,219   no previously-included directories found matching 'vendor/hmmer/autobuild'
2022-10-26T21:31:27,223   no previously-included directories found matching 'vendor/hmmer/documentation'
2022-10-26T21:31:27,227   no previously-included directories found matching 'vendor/hmmer/contrib'
2022-10-26T21:31:27,231   no previously-included directories found matching 'vendor/hmmer/profmark'
2022-10-26T21:31:27,235   no previously-included directories found matching 'vendor/hmmer/testsuite'
2022-10-26T21:31:27,239   no previously-included directories found matching 'vendor/hmmer/test-speed'
2022-10-26T21:31:27,243   no previously-included directories found matching 'vendor/hmmer/tutorial'
2022-10-26T21:31:27,244   adding license file 'COPYING'
2022-10-26T21:31:27,336   writing manifest file '/tmp/pip-modern-metadata-muso90vd/pyhmmer.egg-info/SOURCES.txt'
2022-10-26T21:31:27,340   creating '/tmp/pip-modern-metadata-muso90vd/pyhmmer-0.6.3.dist-info'
2022-10-26T21:31:27,546   adding license file "COPYING" (matched pattern "COPYING*")
2022-10-26T21:31:27,881   Preparing metadata (pyproject.toml): finished with status 'done'
2022-10-26T21:31:27,902   Source in /tmp/pip-wheel-15msvlp8/pyhmmer_1f557c2e11dc4f9985aeab4d9198b637 has version 0.6.3, which satisfies requirement pyhmmer==0.6.3 from https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz
2022-10-26T21:31:27,905   Removed pyhmmer==0.6.3 from https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz from build tracker '/tmp/pip-build-tracker-d9eqm77j'
2022-10-26T21:31:27,926 Created temporary directory: /tmp/pip-unpack-26n7w34l
2022-10-26T21:31:27,927 Building wheels for collected packages: pyhmmer
2022-10-26T21:31:27,940   Created temporary directory: /tmp/pip-wheel-3mswxiy8
2022-10-26T21:31:27,941   Destination directory: /tmp/pip-wheel-3mswxiy8
2022-10-26T21:31:27,948   Building wheel for pyhmmer (pyproject.toml): started
2022-10-26T21:31:27,950   Running command Building wheel for pyhmmer (pyproject.toml)
2022-10-26T21:31:31,759   running bdist_wheel
2022-10-26T21:31:31,800   running build
2022-10-26T21:31:31,802   running build_py
2022-10-26T21:31:31,826   creating build
2022-10-26T21:31:31,827   creating build/lib.linux-armv7l-cpython-37
2022-10-26T21:31:31,830   creating build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:31,833   copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:31,839   copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:31,844   copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:31,851   running egg_info
2022-10-26T21:31:31,895   writing pyhmmer.egg-info/PKG-INFO
2022-10-26T21:31:31,903   writing dependency_links to pyhmmer.egg-info/dependency_links.txt
2022-10-26T21:31:31,911   writing requirements to pyhmmer.egg-info/requires.txt
2022-10-26T21:31:31,915   writing top-level names to pyhmmer.egg-info/top_level.txt
2022-10-26T21:31:31,951   reading manifest file 'pyhmmer.egg-info/SOURCES.txt'
2022-10-26T21:31:32,065   reading manifest template 'MANIFEST.in'
2022-10-26T21:31:34,399   pyHMMER is not supported on CPU architecture: 'armv7l'
2022-10-26T21:31:34,399   warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer'
2022-10-26T21:31:34,406   warning: no previously-included files matching '*.pl' found under directory 'vendor'
2022-10-26T21:31:34,413   no previously-included directories found matching 'vendor/easel/demotic'
2022-10-26T21:31:34,424   no previously-included directories found matching 'vendor/easel/documentation'
2022-10-26T21:31:34,429   no previously-included directories found matching 'vendor/easel/esl_msa_testfiles'
2022-10-26T21:31:34,434   no previously-included directories found matching 'vendor/easel/miniapps'
2022-10-26T21:31:34,439   no previously-included directories found matching 'vendor/easel/testsuite'
2022-10-26T21:31:34,444   no previously-included directories found matching 'vendor/hmmer/autobuild'
2022-10-26T21:31:34,449   no previously-included directories found matching 'vendor/hmmer/documentation'
2022-10-26T21:31:34,455   no previously-included directories found matching 'vendor/hmmer/contrib'
2022-10-26T21:31:34,462   no previously-included directories found matching 'vendor/hmmer/profmark'
2022-10-26T21:31:34,469   no previously-included directories found matching 'vendor/hmmer/testsuite'
2022-10-26T21:31:34,473   no previously-included directories found matching 'vendor/hmmer/test-speed'
2022-10-26T21:31:34,479   no previously-included directories found matching 'vendor/hmmer/tutorial'
2022-10-26T21:31:34,479   adding license file 'COPYING'
2022-10-26T21:31:34,581   writing manifest file 'pyhmmer.egg-info/SOURCES.txt'
2022-10-26T21:31:34,610   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:34,611       !!


2022-10-26T21:31:34,613       ############################
2022-10-26T21:31:34,613       # Package would be ignored #
2022-10-26T21:31:34,613       ############################
2022-10-26T21:31:34,614       Python recognizes 'pyhmmer.fileobj' as an importable package,
2022-10-26T21:31:34,614       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:34,615       'pyhmmer.fileobj' has been automatically added to the distribution only
2022-10-26T21:31:34,616       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:34,616       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:34,617       Please make sure that 'pyhmmer.fileobj' is included as a package by using
2022-10-26T21:31:34,617       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:34,618       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:34,618       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:34,619       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:34,619       documentation page.


2022-10-26T21:31:34,621   !!

2022-10-26T21:31:34,621     check.warn(importable)
2022-10-26T21:31:34,622   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:34,622       !!


2022-10-26T21:31:34,623       ############################
2022-10-26T21:31:34,624       # Package would be ignored #
2022-10-26T21:31:34,624       ############################
2022-10-26T21:31:34,624       Python recognizes 'pyhmmer.reexports' as an importable package,
2022-10-26T21:31:34,625       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:34,626       'pyhmmer.reexports' has been automatically added to the distribution only
2022-10-26T21:31:34,626       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:34,626       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:34,627       Please make sure that 'pyhmmer.reexports' is included as a package by using
2022-10-26T21:31:34,638       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:34,638       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:34,639       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:34,640       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:34,640       documentation page.


2022-10-26T21:31:34,641   !!

2022-10-26T21:31:34,642     check.warn(importable)
2022-10-26T21:31:34,642   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:34,643       !!


2022-10-26T21:31:34,644       ############################
2022-10-26T21:31:34,644       # Package would be ignored #
2022-10-26T21:31:34,645       ############################
2022-10-26T21:31:34,645       Python recognizes 'pyhmmer.tests' as an importable package,
2022-10-26T21:31:34,646       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:34,646       'pyhmmer.tests' has been automatically added to the distribution only
2022-10-26T21:31:34,647       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:34,647       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:34,658       Please make sure that 'pyhmmer.tests' is included as a package by using
2022-10-26T21:31:34,658       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:34,659       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:34,659       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:34,660       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:34,660       documentation page.


2022-10-26T21:31:34,661   !!

2022-10-26T21:31:34,662     check.warn(importable)
2022-10-26T21:31:34,662   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:34,663       !!


2022-10-26T21:31:34,664       ############################
2022-10-26T21:31:34,664       # Package would be ignored #
2022-10-26T21:31:34,665       ############################
2022-10-26T21:31:34,665       Python recognizes 'pyhmmer.tests.data' as an importable package,
2022-10-26T21:31:34,665       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:34,666       'pyhmmer.tests.data' has been automatically added to the distribution only
2022-10-26T21:31:34,666       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:34,667       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:34,678       Please make sure that 'pyhmmer.tests.data' is included as a package by using
2022-10-26T21:31:34,678       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:34,679       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:34,679       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:34,680       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:34,680       documentation page.


2022-10-26T21:31:34,681   !!

2022-10-26T21:31:34,682     check.warn(importable)
2022-10-26T21:31:34,682   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:34,683       !!


2022-10-26T21:31:34,684       ############################
2022-10-26T21:31:34,684       # Package would be ignored #
2022-10-26T21:31:34,684       ############################
2022-10-26T21:31:34,685       Python recognizes 'pyhmmer.tests.data.hmms' as an importable package,
2022-10-26T21:31:34,685       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:34,686       'pyhmmer.tests.data.hmms' has been automatically added to the distribution only
2022-10-26T21:31:34,686       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:34,687       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:34,708       Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using
2022-10-26T21:31:34,709       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:34,709       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:34,710       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:34,711       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:34,711       documentation page.


2022-10-26T21:31:34,713   !!

2022-10-26T21:31:34,714     check.warn(importable)
2022-10-26T21:31:34,714   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:34,715       !!


2022-10-26T21:31:34,716       ############################
2022-10-26T21:31:34,717       # Package would be ignored #
2022-10-26T21:31:34,717       ############################
2022-10-26T21:31:34,718       Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package,
2022-10-26T21:31:34,718       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:34,719       'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only
2022-10-26T21:31:34,719       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:34,720       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:34,721       Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using
2022-10-26T21:31:34,721       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:34,721       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:34,722       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:34,722       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:34,722       documentation page.


2022-10-26T21:31:34,723   !!

2022-10-26T21:31:34,724     check.warn(importable)
2022-10-26T21:31:34,725   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:34,725       !!


2022-10-26T21:31:34,726       ############################
2022-10-26T21:31:34,726       # Package would be ignored #
2022-10-26T21:31:34,727       ############################
2022-10-26T21:31:34,727       Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package,
2022-10-26T21:31:34,727       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:34,748       'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only
2022-10-26T21:31:34,749       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:34,749       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:34,751       Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using
2022-10-26T21:31:34,751       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:34,751       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:34,752       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:34,752       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:34,753       documentation page.


2022-10-26T21:31:34,756   !!

2022-10-26T21:31:34,757     check.warn(importable)
2022-10-26T21:31:34,757   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:34,758       !!


2022-10-26T21:31:34,759       ############################
2022-10-26T21:31:34,760       # Package would be ignored #
2022-10-26T21:31:34,760       ############################
2022-10-26T21:31:34,761       Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package,
2022-10-26T21:31:34,761       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:34,762       'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only
2022-10-26T21:31:34,763       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:34,763       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:34,764       Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using
2022-10-26T21:31:34,765       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:34,765       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:34,766       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:34,767       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:34,767       documentation page.


2022-10-26T21:31:34,779   !!

2022-10-26T21:31:34,779     check.warn(importable)
2022-10-26T21:31:34,780   copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,780   copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,781   copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,781   copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,782   copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,782   copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,782   copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,783   copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,783   copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,784   copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,784   copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,793   copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,816   copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer
2022-10-26T21:31:34,820   creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj
2022-10-26T21:31:34,821   copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj
2022-10-26T21:31:34,827   copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj
2022-10-26T21:31:34,834   creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports
2022-10-26T21:31:34,835   copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports
2022-10-26T21:31:34,840   copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports
2022-10-26T21:31:34,845   copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports
2022-10-26T21:31:34,850   copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports
2022-10-26T21:31:34,855   copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports
2022-10-26T21:31:34,866   copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports
2022-10-26T21:31:34,871   copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports
2022-10-26T21:31:34,876   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests
2022-10-26T21:31:34,879   copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests
2022-10-26T21:31:34,890   copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests
2022-10-26T21:31:34,895   copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests
2022-10-26T21:31:34,901   copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests
2022-10-26T21:31:34,906   copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests
2022-10-26T21:31:34,913   copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests
2022-10-26T21:31:34,917   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data
2022-10-26T21:31:34,920   copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data
2022-10-26T21:31:34,928   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms
2022-10-26T21:31:34,930   copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms
2022-10-26T21:31:34,935   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin
2022-10-26T21:31:34,937   copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin
2022-10-26T21:31:34,945   copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin
2022-10-26T21:31:34,956   copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin
2022-10-26T21:31:34,965   copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin
2022-10-26T21:31:35,114   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,116   copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,124   copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,131   copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,139   copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,148   copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,156   copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,161   copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,205   copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,216   copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,224   copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,229   copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,237   copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,246   copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,314   copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,318   copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,431   copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db
2022-10-26T21:31:35,749   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt
2022-10-26T21:31:35,751   copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt
2022-10-26T21:31:35,771   copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt
2022-10-26T21:31:35,785   copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt
2022-10-26T21:31:35,801   copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt
2022-10-26T21:31:35,825   copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt
2022-10-26T21:31:35,845   copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt
2022-10-26T21:31:35,871   copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt
2022-10-26T21:31:36,199   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2
2022-10-26T21:31:36,201   copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2
2022-10-26T21:31:36,213   copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2
2022-10-26T21:31:36,232   copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2
2022-10-26T21:31:36,252   copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2
2022-10-26T21:31:36,664   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer
2022-10-26T21:31:36,666   copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer
2022-10-26T21:31:36,672   copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer
2022-10-26T21:31:36,685   copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer
2022-10-26T21:31:36,691   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa
2022-10-26T21:31:36,693   copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa
2022-10-26T21:31:36,701   copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa
2022-10-26T21:31:36,708   copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa
2022-10-26T21:31:36,718   copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa
2022-10-26T21:31:36,724   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs
2022-10-26T21:31:36,726   copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs
2022-10-26T21:31:36,797   copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs
2022-10-26T21:31:36,820   copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs
2022-10-26T21:31:36,985   copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs
2022-10-26T21:31:36,999   copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs
2022-10-26T21:31:37,005   copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs
2022-10-26T21:31:37,013   copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs
2022-10-26T21:31:37,020   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables
2022-10-26T21:31:37,022   copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables
2022-10-26T21:31:37,030   copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables
2022-10-26T21:31:37,036   copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables
2022-10-26T21:31:37,043   copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables
2022-10-26T21:31:37,050   copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables
2022-10-26T21:31:37,058   copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables
2022-10-26T21:31:37,063   copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables
2022-10-26T21:31:37,072   copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables
2022-10-26T21:31:37,082   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,083   copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,093   copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,098   copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,108   copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,113   copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,120   copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,126   copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,134   copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,143   copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,150   copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,157   copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,172   copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel
2022-10-26T21:31:37,184   creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,187   copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,193   copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,199   copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,208   copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,214   copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,223   copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,228   copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,236   copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,248   copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,254   copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,260   copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,270   copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7
2022-10-26T21:31:37,277   running build_clib
2022-10-26T21:31:37,318   creating build/temp.linux-armv7l-cpython-37
2022-10-26T21:31:37,328   generating "divsufsort.h" for divsufsort library
2022-10-26T21:31:37,329   copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h
2022-10-26T21:31:37,335   generating "esl_config.h" for easel library
2022-10-26T21:31:38,792   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:38,793       !!


2022-10-26T21:31:38,795       ############################
2022-10-26T21:31:38,796       # Package would be ignored #
2022-10-26T21:31:38,796       ############################
2022-10-26T21:31:38,797       Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package,
2022-10-26T21:31:38,797       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:38,806       'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only
2022-10-26T21:31:38,806       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:38,807       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:38,808       Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using
2022-10-26T21:31:38,808       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:38,809       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:38,809       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:38,810       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:38,810       documentation page.


2022-10-26T21:31:38,811   !!

2022-10-26T21:31:38,812     check.warn(importable)
2022-10-26T21:31:38,812   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:38,813       !!


2022-10-26T21:31:38,814       ############################
2022-10-26T21:31:38,814       # Package would be ignored #
2022-10-26T21:31:38,815       ############################
2022-10-26T21:31:38,815       Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package,
2022-10-26T21:31:38,815       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:38,816       'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only
2022-10-26T21:31:38,816       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:38,817       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:38,821       Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using
2022-10-26T21:31:38,822       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:38,822       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:38,823       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:38,823       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:38,824       documentation page.


2022-10-26T21:31:38,825   !!

2022-10-26T21:31:38,825     check.warn(importable)
2022-10-26T21:31:38,826   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:38,826       !!


2022-10-26T21:31:38,827       ############################
2022-10-26T21:31:38,827       # Package would be ignored #
2022-10-26T21:31:38,828       ############################
2022-10-26T21:31:38,828       Python recognizes 'pyhmmer.tests.data.msa' as an importable package,
2022-10-26T21:31:38,829       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:38,830       'pyhmmer.tests.data.msa' has been automatically added to the distribution only
2022-10-26T21:31:38,830       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:38,830       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:38,831       Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using
2022-10-26T21:31:38,832       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:38,832       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:38,833       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:38,833       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:38,834       documentation page.


2022-10-26T21:31:38,835   !!

2022-10-26T21:31:38,836     check.warn(importable)
2022-10-26T21:31:38,836   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:38,837       !!


2022-10-26T21:31:38,838       ############################
2022-10-26T21:31:38,839       # Package would be ignored #
2022-10-26T21:31:38,839       ############################
2022-10-26T21:31:38,840       Python recognizes 'pyhmmer.tests.data.seqs' as an importable package,
2022-10-26T21:31:38,840       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:38,842       'pyhmmer.tests.data.seqs' has been automatically added to the distribution only
2022-10-26T21:31:38,842       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:38,843       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:38,843       Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using
2022-10-26T21:31:38,844       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:38,844       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:38,844       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:38,845       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:38,845       documentation page.


2022-10-26T21:31:38,846   !!

2022-10-26T21:31:38,847     check.warn(importable)
2022-10-26T21:31:38,847   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:38,848       !!


2022-10-26T21:31:38,849       ############################
2022-10-26T21:31:38,849       # Package would be ignored #
2022-10-26T21:31:38,849       ############################
2022-10-26T21:31:38,850       Python recognizes 'pyhmmer.tests.data.tables' as an importable package,
2022-10-26T21:31:38,850       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:38,851       'pyhmmer.tests.data.tables' has been automatically added to the distribution only
2022-10-26T21:31:38,851       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:38,852       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:38,852       Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using
2022-10-26T21:31:38,853       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:38,853       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:38,853       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:38,854       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:38,855       documentation page.


2022-10-26T21:31:38,856   !!

2022-10-26T21:31:38,856     check.warn(importable)
2022-10-26T21:31:38,857   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.test_easel' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:38,857       !!


2022-10-26T21:31:38,859       ############################
2022-10-26T21:31:38,859       # Package would be ignored #
2022-10-26T21:31:38,860       ############################
2022-10-26T21:31:38,860       Python recognizes 'pyhmmer.tests.test_easel' as an importable package,
2022-10-26T21:31:38,861       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:38,862       'pyhmmer.tests.test_easel' has been automatically added to the distribution only
2022-10-26T21:31:38,862       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:38,863       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:38,864       Please make sure that 'pyhmmer.tests.test_easel' is included as a package by using
2022-10-26T21:31:38,865       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:38,865       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:38,866       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:38,867       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:38,867       documentation page.


2022-10-26T21:31:38,868   !!

2022-10-26T21:31:38,869     check.warn(importable)
2022-10-26T21:31:38,870   /tmp/pip-build-env-yd1v2_wt/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'pyhmmer.tests.test_plan7' as data is deprecated, please list it in `packages`.
2022-10-26T21:31:38,870       !!


2022-10-26T21:31:38,871       ############################
2022-10-26T21:31:38,872       # Package would be ignored #
2022-10-26T21:31:38,872       ############################
2022-10-26T21:31:38,872       Python recognizes 'pyhmmer.tests.test_plan7' as an importable package,
2022-10-26T21:31:38,873       but it is not listed in the `packages` configuration of setuptools.

2022-10-26T21:31:38,874       'pyhmmer.tests.test_plan7' has been automatically added to the distribution only
2022-10-26T21:31:38,874       because it may contain data files, but this behavior is likely to change
2022-10-26T21:31:38,874       in future versions of setuptools (and therefore is considered deprecated).

2022-10-26T21:31:38,875       Please make sure that 'pyhmmer.tests.test_plan7' is included as a package by using
2022-10-26T21:31:38,875       the `packages` configuration field or the proper discovery methods
2022-10-26T21:31:38,876       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-26T21:31:38,876       instead of `find_packages(...)`/`find:`).

2022-10-26T21:31:38,877       You can read more about "package discovery" and "data files" on setuptools
2022-10-26T21:31:38,877       documentation page.


2022-10-26T21:31:38,879   !!

2022-10-26T21:31:38,879     check.warn(importable)
2022-10-26T21:31:38,880   checking whether <stdio.h> can be included... yes
2022-10-26T21:31:38,880   checking whether <stdlib.h> can be included... yes
2022-10-26T21:31:38,881   checking whether <string.h> can be included... yes
2022-10-26T21:31:38,881   checking whether <inttypes.h> can be included... yes
2022-10-26T21:31:55,591   checking whether <stdint.h> can be includedgenerating "p7_config.h" for hmmer library
2022-10-26T21:32:17,299   generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c
2022-10-26T21:32:17,327   generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c
2022-10-26T21:32:17,353   generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c
2022-10-26T21:32:17,391   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c
2022-10-26T21:32:17,391   creating build/temp.linux-armv7l-cpython-37/vendor
2022-10-26T21:32:17,392   creating build/temp.linux-armv7l-cpython-37/vendor/hmmer
2022-10-26T21:32:17,394   creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort
2022-10-26T21:32:17,396   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o
2022-10-26T21:32:33,156   arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o
2022-10-26T21:32:33,290   generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_composition.c, vendor/easel/esl_msafile.c, vendor/easel/esl_regexp.c, vendor/easel/esl_mpi.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_avx512.c, vendor/easel/esl_buffer.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_sqio.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_random.c, vendor/easel/esl_arr3.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_msa.c, vendor/easel/esl_rand64.c, vendor/easel/esl_paml.c, vendor/easel/esl_distance.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_avx.c, vendor/easel/esl_histogram.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_weibull.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_stats.c, vendor/easel/esl_huffman.c, vendor/easel/esl_vmx.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_hyperexp.c, vendor/easel/interface_lapack.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_wuss.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_recorder.c, vendor/easel/esl_ssi.c, vendor/easel/esl_stack.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_normal.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_getopts.c, vendor/easel/esl_sq.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_gencode.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_tree.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_hmm.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_sse.c, vendor/easel/esl_threads.c, vendor/easel/esl_varint.c, vendor/easel/esl_heap.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_neon.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_red_black.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_swat.c, vendor/easel/esl_cpu.c, vendor/easel/esl_graph.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_gamma.c, vendor/easel/easel.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_alloc.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_gev.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_json.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_mem.c, vendor/easel/esl_msashuffle.c, vendor/easel/interface_gsl.c, vendor/easel/esl_cluster.c, vendor/easel/esl_arr2.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_exponential.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c
2022-10-26T21:32:33,370   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c
2022-10-26T21:32:33,376   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c
2022-10-26T21:32:33,378   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c
2022-10-26T21:32:33,379   creating build/temp.linux-armv7l-cpython-37/vendor/easel
2022-10-26T21:32:33,380   creating build/temp.linux-armv7l-cpython-37/vendor/easel
2022-10-26T21:32:33,381   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c
2022-10-26T21:32:33,381   creating build/temp.linux-armv7l-cpython-37/vendor/easel
2022-10-26T21:32:33,382   creating build/temp.linux-armv7l-cpython-37/vendor/easel
2022-10-26T21:32:33,383   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o
2022-10-26T21:32:33,384   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o
2022-10-26T21:32:33,389   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o
2022-10-26T21:32:33,416   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o
2022-10-26T21:32:33,948   vendor/easel/esl_random.c: In function ‘gamma_integer’:
2022-10-26T21:32:33,949   vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-10-26T21:32:33,950      for (i = 0; i < a; i++)
2022-10-26T21:32:33,950                    ^
2022-10-26T21:32:34,026   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c
2022-10-26T21:32:34,028   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o
2022-10-26T21:32:34,779   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c
2022-10-26T21:32:34,781   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o
2022-10-26T21:32:35,089   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c
2022-10-26T21:32:35,090   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o
2022-10-26T21:32:36,006   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c
2022-10-26T21:32:36,008   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o
2022-10-26T21:32:37,378   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c
2022-10-26T21:32:37,380   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o
2022-10-26T21:32:39,248   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c
2022-10-26T21:32:39,250   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o
2022-10-26T21:32:40,542   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c
2022-10-26T21:32:40,543   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o
2022-10-26T21:32:40,625   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c
2022-10-26T21:32:40,626   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o
2022-10-26T21:32:40,918   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c
2022-10-26T21:32:40,920   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o
2022-10-26T21:32:41,952   vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’:
2022-10-26T21:32:41,953   vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:41,953      if (htobe32(info[1]) != dbtype)                             status = eslEUNIMPLEMENTED;
2022-10-26T21:32:41,954                           ^~
2022-10-26T21:32:41,954   vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:41,955      if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; }
2022-10-26T21:32:41,955                                                             ^~
2022-10-26T21:32:41,956   vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:41,956      if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; }
2022-10-26T21:32:41,957                                                                 ^~
2022-10-26T21:32:42,019   vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’:
2022-10-26T21:32:42,020   vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,021      if (ncbi->index >= ncbi->num_seq) return eslEOF;
2022-10-26T21:32:42,021                      ^~
2022-10-26T21:32:42,022   vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’:
2022-10-26T21:32:42,023   vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,024      if (ncbi->index >= ncbi->num_seq) return eslEOF;
2022-10-26T21:32:42,024                      ^~
2022-10-26T21:32:42,025   vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’:
2022-10-26T21:32:42,026   vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,026      if (ncbi->index >= ncbi->num_seq) return eslEOF;
2022-10-26T21:32:42,027                      ^~
2022-10-26T21:32:42,061   vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’:
2022-10-26T21:32:42,062   vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,063        if (status != eslOK || nres != W) {
2022-10-26T21:32:42,063                                    ^~
2022-10-26T21:32:42,064   vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,065          if (ncbi->index >= ncbi->num_seq) return eslEOF;
2022-10-26T21:32:42,065                          ^~
2022-10-26T21:32:42,138   vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’:
2022-10-26T21:32:42,138   vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,139      if (volume < 0 || volume > ncbi->volumes) return eslEINVAL;
2022-10-26T21:32:42,139                               ^
2022-10-26T21:32:42,145   vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,146      if (htobe32(info[1]) != dbtype)                             status = eslEFORMAT;
2022-10-26T21:32:42,147                           ^~
2022-10-26T21:32:42,158   vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’:
2022-10-26T21:32:42,159   vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,159      if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL;
2022-10-26T21:32:42,160                         ^
2022-10-26T21:32:42,160   vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,161      if (ncbi->index_start == -1 || inx < start || inx > end) {
2022-10-26T21:32:42,161                            ^~
2022-10-26T21:32:42,162   vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,162      if (ncbi->index_start == -1 || inx < start || inx > end) {
2022-10-26T21:32:42,163                                         ^
2022-10-26T21:32:42,163   vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,164      if (ncbi->index_start == -1 || inx < start || inx > end) {
2022-10-26T21:32:42,164                                                        ^
2022-10-26T21:32:42,165   vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,165          if (inx < volume->start_seq || inx > volume->end_seq) {
2022-10-26T21:32:42,166                  ^
2022-10-26T21:32:42,166   vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,167          if (inx < volume->start_seq || inx > volume->end_seq) {
2022-10-26T21:32:42,167                                             ^
2022-10-26T21:32:42,178   vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,180     for (cnt = 0; cnt < ncbi->volumes; ++cnt) {
2022-10-26T21:32:42,181                       ^
2022-10-26T21:32:42,181   vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,182       if (inx < volume->end_seq) break;
2022-10-26T21:32:42,187               ^
2022-10-26T21:32:42,187   vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,188     if (cnt >= ncbi->volumes) return eslFAIL;
2022-10-26T21:32:42,189             ^~
2022-10-26T21:32:42,189   vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,190        if (ncbi->index_start == -1 || inx > end) {
2022-10-26T21:32:42,190                              ^~
2022-10-26T21:32:42,190   vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,191        if (ncbi->index_start == -1 || inx > end) {
2022-10-26T21:32:42,191                                           ^
2022-10-26T21:32:42,192   vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,192        if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) {
2022-10-26T21:32:42,193                                                                         ^~
2022-10-26T21:32:42,193   vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,194        if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) {
2022-10-26T21:32:42,238                                                                         ^~
2022-10-26T21:32:42,238   vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,239          if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) {
2022-10-26T21:32:42,239                                                                           ^~
2022-10-26T21:32:42,240   vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’:
2022-10-26T21:32:42,240   vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,241      if (ncbi->index >= ncbi->num_seq) return eslEOF;
2022-10-26T21:32:42,242                      ^~
2022-10-26T21:32:42,242   vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,243        if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
2022-10-26T21:32:42,243                                                        ^~
2022-10-26T21:32:42,244   vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,244        if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
2022-10-26T21:32:42,245                                                        ^~
2022-10-26T21:32:42,245   vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’:
2022-10-26T21:32:42,246   vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,246      if (ncbi->index >= ncbi->num_seq) return eslEOF;
2022-10-26T21:32:42,247                      ^~
2022-10-26T21:32:42,247   vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,288      if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
2022-10-26T21:32:42,288                                                                ^~
2022-10-26T21:32:42,289   vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,289      if (ncbi->seq_apos - sq->doff < size) {
2022-10-26T21:32:42,290                                    ^
2022-10-26T21:32:42,299   vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’:
2022-10-26T21:32:42,318   vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,319      if (ncbi->index >= ncbi->num_seq) return eslEOF;
2022-10-26T21:32:42,319                      ^~
2022-10-26T21:32:42,325   vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,326      if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT;
2022-10-26T21:32:42,327                                                      ^~
2022-10-26T21:32:42,370   vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’:
2022-10-26T21:32:42,371   vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,372      if (ncbi->index >= ncbi->num_seq) return eslEOF;
2022-10-26T21:32:42,373                      ^~
2022-10-26T21:32:42,382   vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,382      if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT;
2022-10-26T21:32:42,383                                                                 ^~
2022-10-26T21:32:42,480   vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’:
2022-10-26T21:32:42,481   vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,482      for (x = 0; x < strlen(ncbisym); ++x) {
2022-10-26T21:32:42,483                    ^
2022-10-26T21:32:42,483   vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,484        for (y = 0; y < strlen(abc->sym); ++y) {
2022-10-26T21:32:42,485                      ^
2022-10-26T21:32:42,485   vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,486        if (y >= strlen(abc->sym)) return eslEFORMAT;
2022-10-26T21:32:42,486              ^~
2022-10-26T21:32:42,487   vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’:
2022-10-26T21:32:42,488   vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,489      for (x = 0; x < strlen(ncbisym); ++x) {
2022-10-26T21:32:42,489                    ^
2022-10-26T21:32:42,519   vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,519        for (y = 0; y < strlen(abc->sym); ++y) {
2022-10-26T21:32:42,520                      ^
2022-10-26T21:32:42,522   vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:42,523        if (y >= strlen(abc->sym)) return eslEFORMAT;
2022-10-26T21:32:42,523              ^~
2022-10-26T21:32:42,533   vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’:
2022-10-26T21:32:42,549   vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:32:42,549      if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT;
2022-10-26T21:32:42,550                                                                ^~
2022-10-26T21:32:42,823   vendor/easel/esl_regexp.c: In function ‘regbranch’:
2022-10-26T21:32:42,824   vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-26T21:32:42,824     int flags;
2022-10-26T21:32:42,825         ^~~~~
2022-10-26T21:32:47,749   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c
2022-10-26T21:32:47,751   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o
2022-10-26T21:32:48,598   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c
2022-10-26T21:32:48,608   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o
2022-10-26T21:32:48,856   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c
2022-10-26T21:32:48,857   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o
2022-10-26T21:32:55,808   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c
2022-10-26T21:32:55,809   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o
2022-10-26T21:32:55,863   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c
2022-10-26T21:32:55,867   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o
2022-10-26T21:32:56,178   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c
2022-10-26T21:32:56,179   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o
2022-10-26T21:32:56,643   vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’:
2022-10-26T21:32:56,644   vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:32:56,645      if (rank > h->n)
2022-10-26T21:32:56,645               ^
2022-10-26T21:32:56,650   In file included from vendor/easel/esl_msafile2.c:26:
2022-10-26T21:32:56,650   vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’:
2022-10-26T21:32:56,651   vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:56,652    #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
2022-10-26T21:32:56,652                                       ^
2022-10-26T21:32:56,653   vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’
2022-10-26T21:32:56,653        for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i]));
2022-10-26T21:32:56,653                                              ^~~~~~~
2022-10-26T21:32:56,654   vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
2022-10-26T21:32:56,654    #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
2022-10-26T21:32:56,655                                             ^~~
2022-10-26T21:32:56,655   vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’
2022-10-26T21:32:56,656        for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i]));
2022-10-26T21:32:56,656                                              ^~~~~~~
2022-10-26T21:32:56,657   vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:32:56,657    #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
2022-10-26T21:32:56,658                                       ^
2022-10-26T21:32:56,658   vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’
2022-10-26T21:32:56,659        for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i]));
2022-10-26T21:32:56,659                                              ^~~~~~~
2022-10-26T21:32:56,660   vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
2022-10-26T21:32:56,660    #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
2022-10-26T21:32:56,661                                             ^~~
2022-10-26T21:32:56,661   vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’
2022-10-26T21:32:56,662        for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i]));
2022-10-26T21:32:56,662                                              ^~~~~~~
2022-10-26T21:32:56,984   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c
2022-10-26T21:32:56,985   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o
2022-10-26T21:32:57,555   vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function]
2022-10-26T21:32:57,555    static double stopwatch_getRealTime(void);
2022-10-26T21:32:57,556                  ^~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:32:58,728   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c
2022-10-26T21:32:58,728   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o
2022-10-26T21:33:01,635   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c
2022-10-26T21:33:01,636   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o
2022-10-26T21:33:02,484   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c
2022-10-26T21:33:02,485   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o
2022-10-26T21:33:05,455   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c
2022-10-26T21:33:05,456   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o
2022-10-26T21:33:07,077   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c
2022-10-26T21:33:07,079   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o
2022-10-26T21:33:08,922   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c
2022-10-26T21:33:08,924   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o
2022-10-26T21:33:09,682   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c
2022-10-26T21:33:09,683   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o
2022-10-26T21:33:09,920   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c
2022-10-26T21:33:09,922   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o
2022-10-26T21:33:10,259   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c
2022-10-26T21:33:10,260   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o
2022-10-26T21:33:12,558   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c
2022-10-26T21:33:12,558   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o
2022-10-26T21:33:12,741   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c
2022-10-26T21:33:12,747   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o
2022-10-26T21:33:12,885   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c
2022-10-26T21:33:12,886   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o
2022-10-26T21:33:12,928   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c
2022-10-26T21:33:12,928   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o
2022-10-26T21:33:13,448   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c
2022-10-26T21:33:13,448   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o
2022-10-26T21:33:15,348   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c
2022-10-26T21:33:15,348   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o
2022-10-26T21:33:15,892   vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’:
2022-10-26T21:33:15,893   vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:15,893      if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; }
2022-10-26T21:33:15,894               ^~
2022-10-26T21:33:15,936   vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’:
2022-10-26T21:33:15,937   vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:33:15,937      if ((n+1) > ns->flen) ns->flen = n+1;
2022-10-26T21:33:15,938                ^
2022-10-26T21:33:15,965   vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’:
2022-10-26T21:33:15,966   vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:33:15,966      if (n > ns->plen) ns->plen = n;
2022-10-26T21:33:15,967            ^
2022-10-26T21:33:15,980   vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:15,980     for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++)
2022-10-26T21:33:15,981                              ^
2022-10-26T21:33:15,982   vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’:
2022-10-26T21:33:15,982   vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:33:15,983      if (n > ns->slen) ns->slen = n;
2022-10-26T21:33:15,983            ^
2022-10-26T21:33:15,986   vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:15,987     for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) {
2022-10-26T21:33:15,987                                ^
2022-10-26T21:33:16,018   vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’:
2022-10-26T21:33:16,019   vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,020          for (i = 0; i < ns->nprimary; i++)
2022-10-26T21:33:16,020                        ^
2022-10-26T21:33:16,022   vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,022          for (i = 0; i < ns->nprimary; i++)
2022-10-26T21:33:16,023                        ^
2022-10-26T21:33:16,024   vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,025          for (i = 0; i < ns->nsecondary; i++)
2022-10-26T21:33:16,026                        ^
2022-10-26T21:33:16,027   vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,028          for (i = 0; i < ns->nsecondary; i++)
2022-10-26T21:33:16,028                        ^
2022-10-26T21:33:16,045   vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’:
2022-10-26T21:33:16,046   vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,047       for (i = 0; i < ns->nprimary; i++)
2022-10-26T21:33:16,047                     ^
2022-10-26T21:33:16,058   vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,059       for (i = 0; i < ns->nsecondary; i++)
2022-10-26T21:33:16,059                     ^
2022-10-26T21:33:16,080   vendor/easel/esl_ssi.c: In function ‘activate_external_sort’:
2022-10-26T21:33:16,081   vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,082      for (i = 0; i < ns->nprimary; i++) {
2022-10-26T21:33:16,082                    ^
2022-10-26T21:33:16,083   vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,084      for (i = 0; i < ns->nsecondary; i++)
2022-10-26T21:33:16,084                    ^
2022-10-26T21:33:16,085   vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,085      for (i = 0; i < ns->nprimary;   i++) free(ns->pkeys[i].key);
2022-10-26T21:33:16,086                    ^
2022-10-26T21:33:16,087   vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,087      for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key);
2022-10-26T21:33:16,088                    ^
2022-10-26T21:33:16,098   vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:16,098      for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey);
2022-10-26T21:33:16,099                    ^
2022-10-26T21:33:16,149   generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c
2022-10-26T21:33:16,151   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o
2022-10-26T21:33:16,873   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c
2022-10-26T21:33:16,875   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o
2022-10-26T21:33:17,045   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c
2022-10-26T21:33:17,046   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o
2022-10-26T21:33:17,704   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c
2022-10-26T21:33:17,706   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o
2022-10-26T21:33:17,892   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c
2022-10-26T21:33:17,894   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o
2022-10-26T21:33:19,353   vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’:
2022-10-26T21:33:19,354   vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-26T21:33:19,354      return status;
2022-10-26T21:33:19,355             ^~~~~~
2022-10-26T21:33:19,405   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c
2022-10-26T21:33:19,407   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o
2022-10-26T21:33:20,323   vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’:
2022-10-26T21:33:20,324   vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:33:20,324     if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */
2022-10-26T21:33:20,325           ^~
2022-10-26T21:33:22,504   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c
2022-10-26T21:33:22,505   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o
2022-10-26T21:33:23,575   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c
2022-10-26T21:33:23,575   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o
2022-10-26T21:33:25,078   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c
2022-10-26T21:33:25,078   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o
2022-10-26T21:33:27,731   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c
2022-10-26T21:33:27,732   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o
2022-10-26T21:33:28,004   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c
2022-10-26T21:33:28,006   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o
2022-10-26T21:33:29,288   vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’:
2022-10-26T21:33:29,289   vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare]
2022-10-26T21:33:29,290          for (pos = 0; pos < sq->n; pos++)
2022-10-26T21:33:29,290                            ^
2022-10-26T21:33:29,291   vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare]
2022-10-26T21:33:29,291          for (pos = 1; pos <= sq->n; pos++)
2022-10-26T21:33:29,292                            ^~
2022-10-26T21:33:29,828   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c
2022-10-26T21:33:29,830   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o
2022-10-26T21:33:30,394   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c
2022-10-26T21:33:30,396   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o
2022-10-26T21:33:31,263   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c
2022-10-26T21:33:31,264   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o
2022-10-26T21:33:32,438   vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’:
2022-10-26T21:33:32,439   vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-26T21:33:32,440      if (grp & cmask) { status = eslEOD; goto ERROR; }
2022-10-26T21:33:32,440          ~~~~^~~~~~~
2022-10-26T21:33:32,881   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c
2022-10-26T21:33:32,882   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o
2022-10-26T21:33:34,399   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c
2022-10-26T21:33:34,401   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o
2022-10-26T21:33:35,547   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c
2022-10-26T21:33:35,549   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o
2022-10-26T21:33:36,929   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c
2022-10-26T21:33:36,931   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o
2022-10-26T21:33:37,965   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c
2022-10-26T21:33:37,966   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o
2022-10-26T21:33:38,034   In file included from vendor/easel/esl_hmm.c:9:
2022-10-26T21:33:38,035   vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’:
2022-10-26T21:33:38,049   vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:33:38,049    #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
2022-10-26T21:33:38,050                                       ^
2022-10-26T21:33:38,050   vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’
2022-10-26T21:33:38,051          mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR);
2022-10-26T21:33:38,051                       ^~~~~~~
2022-10-26T21:33:38,052   vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
2022-10-26T21:33:38,053    #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
2022-10-26T21:33:38,053                                                 ^~~
2022-10-26T21:33:38,054   vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’
2022-10-26T21:33:38,054          mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR);
2022-10-26T21:33:38,055                       ^~~~~~~
2022-10-26T21:33:38,762   vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’:
2022-10-26T21:33:38,763   vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-26T21:33:38,764       for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.';
2022-10-26T21:33:38,764                                                                          ^
2022-10-26T21:33:38,765   vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here
2022-10-26T21:33:38,766      char     *p;
2022-10-26T21:33:38,766                ^
2022-10-26T21:33:39,405   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c
2022-10-26T21:33:39,406   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o
2022-10-26T21:33:40,372   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c
2022-10-26T21:33:40,374   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o
2022-10-26T21:33:40,655   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c
2022-10-26T21:33:40,657   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o
2022-10-26T21:33:41,309   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c
2022-10-26T21:33:41,311   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o
2022-10-26T21:33:41,478   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c
2022-10-26T21:33:41,478   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o
2022-10-26T21:33:41,500   vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’:
2022-10-26T21:33:41,501   vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:33:41,501          if (alphatype != dd->abc_r->type)
2022-10-26T21:33:41,502                        ^~
2022-10-26T21:33:41,577   vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’:
2022-10-26T21:33:41,578   vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:33:41,579          if (sq->n > max_seqlen) max_seqlen = sq->n;
2022-10-26T21:33:41,579                    ^
2022-10-26T21:33:41,598   vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:33:41,599          n = strlen(sq->name); if (n > max_namelen) max_namelen = n;
2022-10-26T21:33:41,599                                      ^
2022-10-26T21:33:41,600   vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:33:41,601          n = strlen(sq->acc);  if (n > max_acclen)  max_acclen  = n;
2022-10-26T21:33:41,601                                      ^
2022-10-26T21:33:41,602   vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:33:41,602          n = strlen(sq->desc); if (n > max_desclen) max_desclen = n;
2022-10-26T21:33:41,603                                      ^
2022-10-26T21:33:41,606   vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:33:41,607          if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen)
2022-10-26T21:33:41,608                                                        ^~
2022-10-26T21:33:41,608   vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:33:41,609          if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1)
2022-10-26T21:33:41,609                                                        ^~
2022-10-26T21:33:41,610   vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:33:41,611          if ( fwrite(sq->acc,  sizeof(char), n+1, mfp) != n+1)
2022-10-26T21:33:41,611                                                        ^~
2022-10-26T21:33:41,613   vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:33:41,614          if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1)
2022-10-26T21:33:41,614                                                        ^~
2022-10-26T21:33:41,693   vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’:
2022-10-26T21:33:41,694   vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type]
2022-10-26T21:33:41,695    }
2022-10-26T21:33:41,696    ^
2022-10-26T21:33:41,713   vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’:
2022-10-26T21:33:41,715   vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type]
2022-10-26T21:33:41,716    }
2022-10-26T21:33:41,717    ^
2022-10-26T21:33:41,918   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c
2022-10-26T21:33:41,919   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o
2022-10-26T21:33:43,981   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c
2022-10-26T21:33:43,983   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o
2022-10-26T21:33:44,485   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c
2022-10-26T21:33:44,486   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o
2022-10-26T21:33:44,533   generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c
2022-10-26T21:33:44,536   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o
2022-10-26T21:33:45,048   vendor/easel/easel.c: In function ‘esl_FileNewSuffix’:
2022-10-26T21:33:45,050   vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
2022-10-26T21:33:45,050      nf = (lastdot == NULL)? strlen(filename) : lastdot-filename;
2022-10-26T21:33:45,051                                                 ^~~~~~~~~~~~~~~~
2022-10-26T21:33:45,464   vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’:
2022-10-26T21:33:45,469   vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:33:45,469      if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp");
2022-10-26T21:33:45,470                           ^~
2022-10-26T21:33:49,161   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c
2022-10-26T21:33:49,162   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o
2022-10-26T21:33:49,757   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c
2022-10-26T21:33:49,758   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o
2022-10-26T21:33:50,175   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c
2022-10-26T21:33:50,177   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o
2022-10-26T21:33:51,648   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c
2022-10-26T21:33:51,648   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o
2022-10-26T21:33:52,019   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c
2022-10-26T21:33:52,021   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o
2022-10-26T21:33:52,628   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c
2022-10-26T21:33:52,628   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o
2022-10-26T21:33:53,009   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c
2022-10-26T21:33:53,010   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o
2022-10-26T21:33:53,088   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c
2022-10-26T21:33:53,090   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o
2022-10-26T21:33:54,416   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c
2022-10-26T21:33:54,417   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o
2022-10-26T21:33:54,498   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c
2022-10-26T21:33:54,500   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o
2022-10-26T21:33:54,664   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c
2022-10-26T21:33:54,666   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o
2022-10-26T21:33:55,014   vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’:
2022-10-26T21:33:55,020   vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:33:55,020      if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle");
2022-10-26T21:33:55,021                    ^~
2022-10-26T21:33:55,052   vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’:
2022-10-26T21:33:55,052   vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-26T21:33:55,053      if (opt_fx) *opt_fx = fx;
2022-10-26T21:33:55,053                  ~~~~~~~~^~~~
2022-10-26T21:33:55,054   vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-26T21:33:55,054      x=v=w= a + c*(b-a);           /* initial guess of x by golden section */
2022-10-26T21:33:55,055                   ~~^~~
2022-10-26T21:33:55,055   vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here
2022-10-26T21:33:55,056      double ax,bx,cx;
2022-10-26T21:33:55,056                   ^~
2022-10-26T21:33:55,057   vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-10-26T21:33:55,057      x=v=w= a + c*(b-a);           /* initial guess of x by golden section */
2022-10-26T21:33:55,058          ~^~~~~~~~~~~~~
2022-10-26T21:33:55,058   vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here
2022-10-26T21:33:55,059      double ax,bx,cx;
2022-10-26T21:33:55,059             ^~
2022-10-26T21:33:57,102   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c
2022-10-26T21:33:57,104   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o
2022-10-26T21:33:57,684   generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c
2022-10-26T21:33:57,685   creating build/temp.linux-armv7l-cpython-37/build
2022-10-26T21:33:57,686   creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37
2022-10-26T21:33:57,688   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o
2022-10-26T21:33:58,465   generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c
2022-10-26T21:33:58,465   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o
2022-10-26T21:33:58,650   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c
2022-10-26T21:33:58,651   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o
2022-10-26T21:33:58,896   build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’:
2022-10-26T21:33:58,896   build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:33:58,897          if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed");
2022-10-26T21:33:58,898                                                               ^~
2022-10-26T21:33:58,951   vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’:
2022-10-26T21:33:58,953   vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:33:58,954       for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */
2022-10-26T21:33:58,954                     ^
2022-10-26T21:33:59,232   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c
2022-10-26T21:33:59,232   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o
2022-10-26T21:34:00,248   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c
2022-10-26T21:34:00,248   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o
2022-10-26T21:34:02,386   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c
2022-10-26T21:34:02,388   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o
2022-10-26T21:34:04,561   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c
2022-10-26T21:34:04,563   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o
2022-10-26T21:34:06,768   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c
2022-10-26T21:34:06,768   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o
2022-10-26T21:34:08,045   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c
2022-10-26T21:34:08,047   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o
2022-10-26T21:34:08,919   vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’:
2022-10-26T21:34:08,919   vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare]
2022-10-26T21:34:08,920      for (h = 0; h < kh->hashsize; h++)
2022-10-26T21:34:08,921                    ^
2022-10-26T21:34:08,921   vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’:
2022-10-26T21:34:08,922   vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:08,922      for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1;
2022-10-26T21:34:08,923                    ^
2022-10-26T21:34:08,923   vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’:
2022-10-26T21:34:08,924   vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare]
2022-10-26T21:34:08,924      for (h = 0; h < kh->hashsize; h++)
2022-10-26T21:34:08,925                    ^
2022-10-26T21:34:08,942   vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’:
2022-10-26T21:34:08,943   vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:08,944      if (kh->nkeys > 3*kh->hashsize)
2022-10-26T21:34:08,944                    ^
2022-10-26T21:34:08,947   vendor/easel/esl_keyhash.c: In function ‘keyhash_create’:
2022-10-26T21:34:08,948   vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:08,948      for (i = 0; i < kh->hashsize; i++)  kh->hashtable[i] = -1;
2022-10-26T21:34:08,949                    ^
2022-10-26T21:34:08,983   vendor/easel/esl_keyhash.c: In function ‘key_upsize’:
2022-10-26T21:34:08,984   vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:08,984      for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1;
2022-10-26T21:34:08,985                    ^
2022-10-26T21:34:10,577   generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c
2022-10-26T21:34:10,579   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o
2022-10-26T21:34:13,986   arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o
2022-10-26T21:34:14,752   generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c
2022-10-26T21:34:14,800   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c
2022-10-26T21:34:14,802   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c
2022-10-26T21:34:14,803   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c
2022-10-26T21:34:14,805   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c
2022-10-26T21:34:14,806   creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src
2022-10-26T21:34:14,809   creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src
2022-10-26T21:34:14,809   creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src
2022-10-26T21:34:14,810   creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src
2022-10-26T21:34:14,810   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o
2022-10-26T21:34:14,812   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o
2022-10-26T21:34:14,825   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o
2022-10-26T21:34:14,856   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o
2022-10-26T21:34:15,391   In file included from vendor/hmmer/src/generic_msv.c:20:
2022-10-26T21:34:15,392   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:15,392    #error "No vector implementation enabled"
2022-10-26T21:34:15,393     ^~~~~
2022-10-26T21:34:15,394   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,394      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:15,395      ^~~~~~
2022-10-26T21:34:15,396   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,396      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:15,397      ^~~~~~
2022-10-26T21:34:15,398   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,399      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:15,399      ^~~~~~
2022-10-26T21:34:15,400   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,400      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:15,401      ^~~~~~
2022-10-26T21:34:15,431   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,432    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:15,433                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:15,433                                                                                                                           P7_PROFILE
2022-10-26T21:34:15,435   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,436    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:15,436                                                ^~~~~~~~~~~
2022-10-26T21:34:15,437                                                P7_PROFILE
2022-10-26T21:34:15,443   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,444    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:15,445                                                ^~~~~~~~~~~
2022-10-26T21:34:15,445                                                P7_PROFILE
2022-10-26T21:34:15,452   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,453    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:15,453                                                ^~~~~~~~~~~
2022-10-26T21:34:15,454                                                P7_PROFILE
2022-10-26T21:34:15,457   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:15,457    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:15,458                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:15,484   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,485    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:15,486                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:15,486                                                                                                                                        P7_PROFILE
2022-10-26T21:34:15,500   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,500    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:15,501                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:15,502                                                                                                                                        P7_PROFILE
2022-10-26T21:34:15,504   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,505    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:15,506                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:15,506                                                                                        P7_PROFILE
2022-10-26T21:34:15,507   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:15,508    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:15,509                                                                                                         ^~~~~~
2022-10-26T21:34:15,509                                                                                                         P7_GMX
2022-10-26T21:34:15,532   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:15,533    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:15,533                                                                                                                      ^~~~~~
2022-10-26T21:34:15,534                                                                                                                      P7_GMX
2022-10-26T21:34:15,535   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:15,536    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:15,537                                                                                                                                   ^~~~~~
2022-10-26T21:34:15,537                                                                                                                                   P7_GMX
2022-10-26T21:34:15,558   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:15,559    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:15,560                                                                                                                                                ^~~~~~
2022-10-26T21:34:15,560                                                                                                                                                P7_GMX
2022-10-26T21:34:15,564   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,565    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:15,566                                                  ^~~~~~~~~~~
2022-10-26T21:34:15,566                                                  P7_PROFILE
2022-10-26T21:34:15,568   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,568    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:15,568                                                      ^~~~~~~~~~~
2022-10-26T21:34:15,569                                                      P7_PROFILE
2022-10-26T21:34:15,601   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,601    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:15,602                                             ^~~~~~~~~~~
2022-10-26T21:34:15,603                                             P7_PROFILE
2022-10-26T21:34:15,604   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:15,604    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:15,605                                                                 ^~~~~~~~~~~
2022-10-26T21:34:15,606   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:15,607    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:15,607                                                                 ^~~~~~~~~~~
2022-10-26T21:34:15,608   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,608    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:15,609                                                           ^~~~~~~~~~~
2022-10-26T21:34:15,609                                                           P7_PROFILE
2022-10-26T21:34:15,649   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,650    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:15,650                                                           ^~~~~~~~~~~
2022-10-26T21:34:15,651                                                           P7_PROFILE
2022-10-26T21:34:15,657   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,657    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:15,658                                    ^~~~~~~~~~~
2022-10-26T21:34:15,658                                    P7_PROFILE
2022-10-26T21:34:15,770   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c
2022-10-26T21:34:15,772   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o
2022-10-26T21:34:15,846   In file included from vendor/hmmer/src/generic_fwdback.c:15:
2022-10-26T21:34:15,846   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:15,847    #error "No vector implementation enabled"
2022-10-26T21:34:15,847     ^~~~~
2022-10-26T21:34:15,851   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,852      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:15,852      ^~~~~~
2022-10-26T21:34:15,853   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,854      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:15,854      ^~~~~~
2022-10-26T21:34:15,855   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,855      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:15,856      ^~~~~~
2022-10-26T21:34:15,857   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,857      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:15,858      ^~~~~~
2022-10-26T21:34:15,865   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,865    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:15,866                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:15,867                                                                                                                           P7_PROFILE
2022-10-26T21:34:15,871   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,872    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:15,872                                                ^~~~~~~~~~~
2022-10-26T21:34:15,873                                                P7_PROFILE
2022-10-26T21:34:15,877   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,878    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:15,878                                                ^~~~~~~~~~~
2022-10-26T21:34:15,879                                                P7_PROFILE
2022-10-26T21:34:15,882   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,883    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:15,883                                                ^~~~~~~~~~~
2022-10-26T21:34:15,884                                                P7_PROFILE
2022-10-26T21:34:15,886   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:15,887    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:15,887                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:15,913   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,914    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:15,915                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:15,915                                                                                                                                        P7_PROFILE
2022-10-26T21:34:15,916   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,917    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:15,918                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:15,918                                                                                                                                        P7_PROFILE
2022-10-26T21:34:15,932   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,933    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:15,934                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:15,935                                                                                        P7_PROFILE
2022-10-26T21:34:15,936   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:15,937    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:15,937                                                                                                         ^~~~~~
2022-10-26T21:34:15,938                                                                                                         P7_GMX
2022-10-26T21:34:15,939   In file included from vendor/hmmer/src/build.c:32:
2022-10-26T21:34:15,940   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:15,940    #error "No vector implementation enabled"
2022-10-26T21:34:15,940     ^~~~~
2022-10-26T21:34:15,941   In file included from vendor/hmmer/src/errors.c:19:
2022-10-26T21:34:15,941   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:15,942    #error "No vector implementation enabled"
2022-10-26T21:34:15,942     ^~~~~
2022-10-26T21:34:15,942   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,943      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:15,943      ^~~~~~
2022-10-26T21:34:15,943   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,944      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:15,944      ^~~~~~
2022-10-26T21:34:15,945   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,946      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:15,947      ^~~~~~
2022-10-26T21:34:15,947   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,948      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:15,948      ^~~~~~
2022-10-26T21:34:15,949   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,949      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:15,950      ^~~~~~
2022-10-26T21:34:15,950   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,951      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:15,951      ^~~~~~
2022-10-26T21:34:15,952   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,952      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:15,953      ^~~~~~
2022-10-26T21:34:15,953   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:15,954      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:15,954      ^~~~~~
2022-10-26T21:34:15,968   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,969    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:15,969                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:15,970                                                                                                                           P7_PROFILE
2022-10-26T21:34:15,970   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,971    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:15,972                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:15,972                                                                                                                           P7_PROFILE
2022-10-26T21:34:15,973   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:15,973    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:15,974                                                                                                                      ^~~~~~
2022-10-26T21:34:15,975                                                                                                                      P7_GMX
2022-10-26T21:34:15,976   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:15,976    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:15,977                                                ^~~~~~~~~~~
2022-10-26T21:34:15,977                                                P7_PROFILE
2022-10-26T21:34:15,981   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:15,998    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:15,999                                                                                                                                   ^~~~~~
2022-10-26T21:34:15,999                                                                                                                                   P7_GMX
2022-10-26T21:34:16,001   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,002    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:16,002                                                ^~~~~~~~~~~
2022-10-26T21:34:16,003                                                P7_PROFILE
2022-10-26T21:34:16,004   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,005    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:16,006                                                ^~~~~~~~~~~
2022-10-26T21:34:16,006                                                P7_PROFILE
2022-10-26T21:34:16,007   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,008    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:16,008                                                ^~~~~~~~~~~
2022-10-26T21:34:16,009                                                P7_PROFILE
2022-10-26T21:34:16,009   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,010    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:16,010                                                ^~~~~~~~~~~
2022-10-26T21:34:16,011                                                P7_PROFILE
2022-10-26T21:34:16,028   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,028    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:16,029                                                ^~~~~~~~~~~
2022-10-26T21:34:16,030                                                P7_PROFILE
2022-10-26T21:34:16,030   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,031    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:16,031                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:16,031   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,032    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,032                                                                                                                                                ^~~~~~
2022-10-26T21:34:16,033                                                                                                                                                P7_GMX
2022-10-26T21:34:16,033   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,060    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:16,060                                                  ^~~~~~~~~~~
2022-10-26T21:34:16,061                                                  P7_PROFILE
2022-10-26T21:34:16,062   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,062    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:16,062                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:16,063                                                                                                                                        P7_PROFILE
2022-10-26T21:34:16,063   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,064    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:16,064                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:16,065   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,065    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:16,066                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:16,066                                                                                                                                        P7_PROFILE
2022-10-26T21:34:16,118   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,119    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:16,120                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:16,121                                                                                                                                        P7_PROFILE
2022-10-26T21:34:16,121   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,122    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,123                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:16,123                                                                                        P7_PROFILE
2022-10-26T21:34:16,124   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,124    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:16,125                                                      ^~~~~~~~~~~
2022-10-26T21:34:16,125                                                      P7_PROFILE
2022-10-26T21:34:16,126   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,126    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,127                                                                                                         ^~~~~~
2022-10-26T21:34:16,158                                                                                                         P7_GMX
2022-10-26T21:34:16,158   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,159    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:16,159                                             ^~~~~~~~~~~
2022-10-26T21:34:16,159                                             P7_PROFILE
2022-10-26T21:34:16,160   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,178    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,179                                                                                                                      ^~~~~~
2022-10-26T21:34:16,180                                                                                                                      P7_GMX
2022-10-26T21:34:16,180   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,181    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:16,182                                                                 ^~~~~~~~~~~
2022-10-26T21:34:16,183   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,183    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:16,184                                                                 ^~~~~~~~~~~
2022-10-26T21:34:16,185   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,185    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:16,186                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:16,186                                                                                                                                        P7_PROFILE
2022-10-26T21:34:16,187   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,228    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:16,228                                                           ^~~~~~~~~~~
2022-10-26T21:34:16,229                                                           P7_PROFILE
2022-10-26T21:34:16,230   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,230    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,231                                                                                                                                   ^~~~~~
2022-10-26T21:34:16,231                                                                                                                                   P7_GMX
2022-10-26T21:34:16,231   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,232    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,232                                                                                                                                                ^~~~~~
2022-10-26T21:34:16,233                                                                                                                                                P7_GMX
2022-10-26T21:34:16,233   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,234    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,234                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:16,235                                                                                        P7_PROFILE
2022-10-26T21:34:16,235   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,236    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,236                                                                                                         ^~~~~~
2022-10-26T21:34:16,236                                                                                                         P7_GMX
2022-10-26T21:34:16,237   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,278    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,278                                                                                                                      ^~~~~~
2022-10-26T21:34:16,279                                                                                                                      P7_GMX
2022-10-26T21:34:16,279   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,280    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:16,281                                                           ^~~~~~~~~~~
2022-10-26T21:34:16,281                                                           P7_PROFILE
2022-10-26T21:34:16,282   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,282    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:16,283                                                  ^~~~~~~~~~~
2022-10-26T21:34:16,283                                                  P7_PROFILE
2022-10-26T21:34:16,283   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,284    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:16,284                                                      ^~~~~~~~~~~
2022-10-26T21:34:16,285                                                      P7_PROFILE
2022-10-26T21:34:16,285   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,286    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:16,308                                             ^~~~~~~~~~~
2022-10-26T21:34:16,308                                             P7_PROFILE
2022-10-26T21:34:16,309   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,309    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:16,310                                    ^~~~~~~~~~~
2022-10-26T21:34:16,310                                    P7_PROFILE
2022-10-26T21:34:16,311   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,311    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,312                                                                                                                                   ^~~~~~
2022-10-26T21:34:16,312                                                                                                                                   P7_GMX
2022-10-26T21:34:16,313   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,313    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,314                                                                                                                                                ^~~~~~
2022-10-26T21:34:16,314                                                                                                                                                P7_GMX
2022-10-26T21:34:16,315   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,315    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:16,316                                                                 ^~~~~~~~~~~
2022-10-26T21:34:16,316   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,317    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:16,338                                                                 ^~~~~~~~~~~
2022-10-26T21:34:16,338   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,339    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:16,339                                                           ^~~~~~~~~~~
2022-10-26T21:34:16,340                                                           P7_PROFILE
2022-10-26T21:34:16,340   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,341    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:16,341                                                           ^~~~~~~~~~~
2022-10-26T21:34:16,342                                                           P7_PROFILE
2022-10-26T21:34:16,342   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,343    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:16,343                                                  ^~~~~~~~~~~
2022-10-26T21:34:16,343                                                  P7_PROFILE
2022-10-26T21:34:16,344   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,344    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:16,345                                                      ^~~~~~~~~~~
2022-10-26T21:34:16,345                                                      P7_PROFILE
2022-10-26T21:34:16,346   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,346    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:16,347                                    ^~~~~~~~~~~
2022-10-26T21:34:16,347                                    P7_PROFILE
2022-10-26T21:34:16,368   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,369    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:16,369                                             ^~~~~~~~~~~
2022-10-26T21:34:16,370                                             P7_PROFILE
2022-10-26T21:34:16,370   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,371    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:16,371                                                                 ^~~~~~~~~~~
2022-10-26T21:34:16,372   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,372    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:16,372                                                                 ^~~~~~~~~~~
2022-10-26T21:34:16,373   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,373    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:16,374                                                           ^~~~~~~~~~~
2022-10-26T21:34:16,374                                                           P7_PROFILE
2022-10-26T21:34:16,375   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,375    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:16,376                                                           ^~~~~~~~~~~
2022-10-26T21:34:16,376                                                           P7_PROFILE
2022-10-26T21:34:16,377   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,418    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:16,418                                    ^~~~~~~~~~~
2022-10-26T21:34:16,419                                    P7_PROFILE
2022-10-26T21:34:16,419   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c
2022-10-26T21:34:16,420   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o
2022-10-26T21:34:16,420   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c
2022-10-26T21:34:16,421   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o
2022-10-26T21:34:16,421   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c
2022-10-26T21:34:16,422   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o
2022-10-26T21:34:16,638   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c
2022-10-26T21:34:16,638   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o
2022-10-26T21:34:16,646   In file included from vendor/hmmer/src/generic_vtrace.c:14:
2022-10-26T21:34:16,647   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:16,647    #error "No vector implementation enabled"
2022-10-26T21:34:16,648     ^~~~~
2022-10-26T21:34:16,652   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:16,653      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:16,653      ^~~~~~
2022-10-26T21:34:16,654   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:16,654      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:16,655      ^~~~~~
2022-10-26T21:34:16,656   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:16,656      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:16,657      ^~~~~~
2022-10-26T21:34:16,657   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:16,658      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:16,658      ^~~~~~
2022-10-26T21:34:16,659   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,660    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:16,661                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:16,661                                                                                                                           P7_PROFILE
2022-10-26T21:34:16,662   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,663    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:16,663                                                ^~~~~~~~~~~
2022-10-26T21:34:16,664                                                P7_PROFILE
2022-10-26T21:34:16,690   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,690    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:16,691                                                ^~~~~~~~~~~
2022-10-26T21:34:16,691                                                P7_PROFILE
2022-10-26T21:34:16,692   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,693    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:16,694                                                ^~~~~~~~~~~
2022-10-26T21:34:16,694                                                P7_PROFILE
2022-10-26T21:34:16,695   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,695    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:16,696                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:16,697   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,708    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:16,709                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:16,710                                                                                                                                        P7_PROFILE
2022-10-26T21:34:16,711   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,711    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:16,712                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:16,712                                                                                                                                        P7_PROFILE
2022-10-26T21:34:16,713   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,713    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,714                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:16,715                                                                                        P7_PROFILE
2022-10-26T21:34:16,715   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,716    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,717                                                                                                         ^~~~~~
2022-10-26T21:34:16,717                                                                                                         P7_GMX
2022-10-26T21:34:16,726   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,727    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,727                                                                                                                      ^~~~~~
2022-10-26T21:34:16,728                                                                                                                      P7_GMX
2022-10-26T21:34:16,728   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,729    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,730                                                                                                                                   ^~~~~~
2022-10-26T21:34:16,730                                                                                                                                   P7_GMX
2022-10-26T21:34:16,731   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:16,731    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:16,731                                                                                                                                                ^~~~~~
2022-10-26T21:34:16,732                                                                                                                                                P7_GMX
2022-10-26T21:34:16,733   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,733    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:16,734                                                  ^~~~~~~~~~~
2022-10-26T21:34:16,734                                                  P7_PROFILE
2022-10-26T21:34:16,735   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,735    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:16,736                                                      ^~~~~~~~~~~
2022-10-26T21:34:16,736                                                      P7_PROFILE
2022-10-26T21:34:16,737   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,772    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:16,778                                             ^~~~~~~~~~~
2022-10-26T21:34:16,779                                             P7_PROFILE
2022-10-26T21:34:16,780   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,780    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:16,781                                                                 ^~~~~~~~~~~
2022-10-26T21:34:16,781   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:16,782    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:16,782                                                                 ^~~~~~~~~~~
2022-10-26T21:34:16,783   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,784    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:16,784                                                           ^~~~~~~~~~~
2022-10-26T21:34:16,784                                                           P7_PROFILE
2022-10-26T21:34:16,785   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,785    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:16,786                                                           ^~~~~~~~~~~
2022-10-26T21:34:16,787                                                           P7_PROFILE
2022-10-26T21:34:16,787   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:16,790    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:16,791                                    ^~~~~~~~~~~
2022-10-26T21:34:16,791                                    P7_PROFILE
2022-10-26T21:34:16,791   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c
2022-10-26T21:34:16,792   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o
2022-10-26T21:34:16,797   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c
2022-10-26T21:34:16,801   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o
2022-10-26T21:34:17,084   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c
2022-10-26T21:34:17,086   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o
2022-10-26T21:34:17,104   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c
2022-10-26T21:34:17,108   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o
2022-10-26T21:34:17,568   In file included from vendor/hmmer/src/tracealign.c:15:
2022-10-26T21:34:17,569   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:17,569    #error "No vector implementation enabled"
2022-10-26T21:34:17,570     ^~~~~
2022-10-26T21:34:17,572   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:17,573      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:17,573      ^~~~~~
2022-10-26T21:34:17,574   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:17,574      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:17,575      ^~~~~~
2022-10-26T21:34:17,576   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:17,576      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:17,577      ^~~~~~
2022-10-26T21:34:17,578   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:17,578      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:17,579      ^~~~~~
2022-10-26T21:34:17,580   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,580    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:17,581                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:17,581                                                                                                                           P7_PROFILE
2022-10-26T21:34:17,598   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,599    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:17,599                                                ^~~~~~~~~~~
2022-10-26T21:34:17,600                                                P7_PROFILE
2022-10-26T21:34:17,600   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,601    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:17,601                                                ^~~~~~~~~~~
2022-10-26T21:34:17,602                                                P7_PROFILE
2022-10-26T21:34:17,602   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,603    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:17,604                                                ^~~~~~~~~~~
2022-10-26T21:34:17,604                                                P7_PROFILE
2022-10-26T21:34:17,605   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:17,605    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:17,606                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:17,607   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,633    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:17,634                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:17,634                                                                                                                                        P7_PROFILE
2022-10-26T21:34:17,635   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,635    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:17,636                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:17,637                                                                                                                                        P7_PROFILE
2022-10-26T21:34:17,655   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,656    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:17,657                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:17,657                                                                                        P7_PROFILE
2022-10-26T21:34:17,662   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:17,663    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:17,663                                                                                                         ^~~~~~
2022-10-26T21:34:17,664                                                                                                         P7_GMX
2022-10-26T21:34:17,665   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:17,665    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:17,666                                                                                                                      ^~~~~~
2022-10-26T21:34:17,666                                                                                                                      P7_GMX
2022-10-26T21:34:17,667   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:17,690    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:17,691                                                                                                                                   ^~~~~~
2022-10-26T21:34:17,691                                                                                                                                   P7_GMX
2022-10-26T21:34:17,692   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:17,692    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:17,693                                                                                                                                                ^~~~~~
2022-10-26T21:34:17,693                                                                                                                                                P7_GMX
2022-10-26T21:34:17,694   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,694    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:17,694                                                  ^~~~~~~~~~~
2022-10-26T21:34:17,695                                                  P7_PROFILE
2022-10-26T21:34:17,695   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,696    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:17,696                                                      ^~~~~~~~~~~
2022-10-26T21:34:17,697                                                      P7_PROFILE
2022-10-26T21:34:17,724   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,725    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:17,725                                             ^~~~~~~~~~~
2022-10-26T21:34:17,726                                             P7_PROFILE
2022-10-26T21:34:17,726   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:17,727    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:17,734                                                                 ^~~~~~~~~~~
2022-10-26T21:34:17,735   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:17,736    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:17,736                                                                 ^~~~~~~~~~~
2022-10-26T21:34:17,737   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,737    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:17,738                                                           ^~~~~~~~~~~
2022-10-26T21:34:17,739                                                           P7_PROFILE
2022-10-26T21:34:17,739   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,739    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:17,740                                                           ^~~~~~~~~~~
2022-10-26T21:34:17,741                                                           P7_PROFILE
2022-10-26T21:34:17,741   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,742    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:17,742                                    ^~~~~~~~~~~
2022-10-26T21:34:17,742                                    P7_PROFILE
2022-10-26T21:34:17,743   vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’:
2022-10-26T21:34:17,744   vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:17,744      P7_OMX       *oxf     = NULL; /* optimized Forward matrix        */
2022-10-26T21:34:17,745      ^~~~~~
2022-10-26T21:34:17,745      P7_GMX
2022-10-26T21:34:17,746   vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:17,746      P7_OMX       *oxb     = NULL; /* optimized Backward matrix       */
2022-10-26T21:34:17,747      ^~~~~~
2022-10-26T21:34:17,747      P7_GMX
2022-10-26T21:34:17,748   vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,748      P7_OPROFILE  *om      = NULL;
2022-10-26T21:34:17,749      ^~~~~~~~~~~
2022-10-26T21:34:17,749      P7_PROFILE
2022-10-26T21:34:17,750   vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,750      om = p7_oprofile_Create(hmm->M, hmm->abc);
2022-10-26T21:34:17,750           ^~~~~~~~~~~~~~~~~~
2022-10-26T21:34:17,751           p7_profile_Create
2022-10-26T21:34:17,751   vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2022-10-26T21:34:17,752      om = p7_oprofile_Create(hmm->M, hmm->abc);
2022-10-26T21:34:17,752         ^
2022-10-26T21:34:17,753   vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,753      p7_oprofile_Convert(gm, om);
2022-10-26T21:34:17,754      ^~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:17,754      p7_profile_Compare
2022-10-26T21:34:17,755   vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,755      oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n);
2022-10-26T21:34:17,755            ^~~~~~~~~~~~~
2022-10-26T21:34:17,756            p7_gmx_Create
2022-10-26T21:34:17,756   vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2022-10-26T21:34:17,757      oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n);
2022-10-26T21:34:17,757          ^
2022-10-26T21:34:17,758   vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2022-10-26T21:34:17,758      oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n);
2022-10-26T21:34:17,759          ^
2022-10-26T21:34:17,759   vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,760        p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n);
2022-10-26T21:34:17,760        ^~~~~~~~~~~~~
2022-10-26T21:34:17,761        p7_gmx_GrowTo
2022-10-26T21:34:17,761   vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,761        p7_oprofile_ReconfigLength(om, sq[idx]->n);
2022-10-26T21:34:17,762        ^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:17,762        p7_ReconfigLength
2022-10-26T21:34:17,763   vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,763        p7_Forward (sq[idx]->dsq, sq[idx]->n, om,      oxf, &fwdsc);
2022-10-26T21:34:17,764        ^~~~~~~~~~
2022-10-26T21:34:17,764        p7_GForward
2022-10-26T21:34:17,765   vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,765        p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL);
2022-10-26T21:34:17,766        ^~~~~~~~~~~
2022-10-26T21:34:17,766        p7_GBackward
2022-10-26T21:34:17,767   vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,767        status = p7_Decoding(om, oxf, oxb, oxb);      /* <oxb> is now overwritten with post probabilities     */
2022-10-26T21:34:17,768                 ^~~~~~~~~~~
2022-10-26T21:34:17,768                 p7_GDecoding
2022-10-26T21:34:17,769   vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,769            p7_OptimalAccuracy(om, oxb, oxf, &oasc);      /* <oxf> is now overwritten with OA scores              */
2022-10-26T21:34:17,770            ^~~~~~~~~~~~~~~~~~
2022-10-26T21:34:17,770            p7_GOptimalAccuracy
2022-10-26T21:34:17,771   vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,771            p7_OATrace        (om, oxb, oxf, tr[idx]);    /* tr[idx] is now an OA traceback for seq #idx          */
2022-10-26T21:34:17,771            ^~~~~~~~~~
2022-10-26T21:34:17,772            p7_GOATrace
2022-10-26T21:34:17,772   vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,773        p7_omx_Reuse(oxf);
2022-10-26T21:34:17,773        ^~~~~~~~~~~~
2022-10-26T21:34:17,773        p7_gmx_Reuse
2022-10-26T21:34:17,774   vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,774      p7_omx_Destroy(oxf);
2022-10-26T21:34:17,775      ^~~~~~~~~~~~~~
2022-10-26T21:34:17,775      p7_gmx_Destroy
2022-10-26T21:34:17,776   vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration]
2022-10-26T21:34:17,776      p7_oprofile_Destroy(om);
2022-10-26T21:34:17,776      ^~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:17,777      p7_profile_Destroy
2022-10-26T21:34:17,865   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c
2022-10-26T21:34:17,866   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o
2022-10-26T21:34:17,877   In file included from vendor/hmmer/src/modelconfig.c:25:
2022-10-26T21:34:17,878   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:17,878    #error "No vector implementation enabled"
2022-10-26T21:34:17,879     ^~~~~
2022-10-26T21:34:17,883   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:17,884      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:17,885      ^~~~~~
2022-10-26T21:34:17,885   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:17,886      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:17,886      ^~~~~~
2022-10-26T21:34:17,887   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:17,887      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:17,890      ^~~~~~
2022-10-26T21:34:17,891   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:17,891      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:17,892      ^~~~~~
2022-10-26T21:34:17,899   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,900    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:17,900                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:17,900                                                                                                                           P7_PROFILE
2022-10-26T21:34:17,905   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,906    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:17,906                                                ^~~~~~~~~~~
2022-10-26T21:34:17,907                                                P7_PROFILE
2022-10-26T21:34:17,931   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,932    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:17,933                                                ^~~~~~~~~~~
2022-10-26T21:34:17,934                                                P7_PROFILE
2022-10-26T21:34:17,935   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,935    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:17,936                                                ^~~~~~~~~~~
2022-10-26T21:34:17,937                                                P7_PROFILE
2022-10-26T21:34:17,952   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:17,953    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:17,954                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:17,954   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,955    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:17,955                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:17,956                                                                                                                                        P7_PROFILE
2022-10-26T21:34:17,957   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,988    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:17,989                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:17,989                                                                                                                                        P7_PROFILE
2022-10-26T21:34:17,990   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:17,991    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:17,991                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:17,992                                                                                        P7_PROFILE
2022-10-26T21:34:17,992   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:17,993    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:17,993                                                                                                         ^~~~~~
2022-10-26T21:34:17,994                                                                                                         P7_GMX
2022-10-26T21:34:17,995   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:17,995    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:17,996                                                                                                                      ^~~~~~
2022-10-26T21:34:17,996                                                                                                                      P7_GMX
2022-10-26T21:34:17,997   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:17,997    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,025                                                                                                                                   ^~~~~~
2022-10-26T21:34:18,026                                                                                                                                   P7_GMX
2022-10-26T21:34:18,026   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,027    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,027                                                                                                                                                ^~~~~~
2022-10-26T21:34:18,027                                                                                                                                                P7_GMX
2022-10-26T21:34:18,028   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,028    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:18,029                                                  ^~~~~~~~~~~
2022-10-26T21:34:18,029                                                  P7_PROFILE
2022-10-26T21:34:18,030   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,030    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:18,031                                                      ^~~~~~~~~~~
2022-10-26T21:34:18,031                                                      P7_PROFILE
2022-10-26T21:34:18,031   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,032    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:18,032                                             ^~~~~~~~~~~
2022-10-26T21:34:18,033                                             P7_PROFILE
2022-10-26T21:34:18,033   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,034    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:18,034                                                                 ^~~~~~~~~~~
2022-10-26T21:34:18,035   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,035    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:18,036                                                                 ^~~~~~~~~~~
2022-10-26T21:34:18,036   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,037    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:18,037                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,038                                                           P7_PROFILE
2022-10-26T21:34:18,039   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,039    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:18,040                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,040                                                           P7_PROFILE
2022-10-26T21:34:18,041   In file included from vendor/hmmer/src/hmmd_search_status.c:18:
2022-10-26T21:34:18,041   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:18,041    #error "No vector implementation enabled"
2022-10-26T21:34:18,042     ^~~~~
2022-10-26T21:34:18,042   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,043      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:18,043      ^~~~~~
2022-10-26T21:34:18,044   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,044      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:18,045      ^~~~~~
2022-10-26T21:34:18,045   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,046      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:18,047      ^~~~~~
2022-10-26T21:34:18,048   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,048      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:18,049      ^~~~~~
2022-10-26T21:34:18,049   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,050    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:18,050                                    ^~~~~~~~~~~
2022-10-26T21:34:18,050                                    P7_PROFILE
2022-10-26T21:34:18,051   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,051    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:18,052                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,052                                                                                                                           P7_PROFILE
2022-10-26T21:34:18,053   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,053    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:18,053                                                ^~~~~~~~~~~
2022-10-26T21:34:18,054                                                P7_PROFILE
2022-10-26T21:34:18,054   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c
2022-10-26T21:34:18,054   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o
2022-10-26T21:34:18,055   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,056    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:18,056                                                ^~~~~~~~~~~
2022-10-26T21:34:18,057                                                P7_PROFILE
2022-10-26T21:34:18,057   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,071    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:18,072                                                ^~~~~~~~~~~
2022-10-26T21:34:18,072                                                P7_PROFILE
2022-10-26T21:34:18,073   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,074    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:18,074                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:18,075   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,075    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:18,098                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:18,098                                                                                                                                        P7_PROFILE
2022-10-26T21:34:18,099   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,100    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:18,101                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:18,101                                                                                                                                        P7_PROFILE
2022-10-26T21:34:18,102   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,102    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,103                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:18,104                                                                                        P7_PROFILE
2022-10-26T21:34:18,104   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,105    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,105                                                                                                         ^~~~~~
2022-10-26T21:34:18,106                                                                                                         P7_GMX
2022-10-26T21:34:18,106   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,107    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,137                                                                                                                      ^~~~~~
2022-10-26T21:34:18,138                                                                                                                      P7_GMX
2022-10-26T21:34:18,139   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,139    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,140                                                                                                                                   ^~~~~~
2022-10-26T21:34:18,140                                                                                                                                   P7_GMX
2022-10-26T21:34:18,141   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,142    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,143                                                                                                                                                ^~~~~~
2022-10-26T21:34:18,143                                                                                                                                                P7_GMX
2022-10-26T21:34:18,144   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,144    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:18,145                                                  ^~~~~~~~~~~
2022-10-26T21:34:18,146                                                  P7_PROFILE
2022-10-26T21:34:18,147   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,147    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:18,168                                                      ^~~~~~~~~~~
2022-10-26T21:34:18,169                                                      P7_PROFILE
2022-10-26T21:34:18,169   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,170    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:18,170                                             ^~~~~~~~~~~
2022-10-26T21:34:18,171                                             P7_PROFILE
2022-10-26T21:34:18,171   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,172    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:18,172                                                                 ^~~~~~~~~~~
2022-10-26T21:34:18,173   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,173    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:18,174                                                                 ^~~~~~~~~~~
2022-10-26T21:34:18,174   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,175    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:18,175                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,176                                                           P7_PROFILE
2022-10-26T21:34:18,176   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,177    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:18,179                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,180                                                           P7_PROFILE
2022-10-26T21:34:18,181   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,181    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:18,181                                    ^~~~~~~~~~~
2022-10-26T21:34:18,182                                    P7_PROFILE
2022-10-26T21:34:18,225   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c
2022-10-26T21:34:18,227   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o
2022-10-26T21:34:18,406   In file included from vendor/hmmer/src/hmmer.c:18:
2022-10-26T21:34:18,406   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:18,407    #error "No vector implementation enabled"
2022-10-26T21:34:18,407     ^~~~~
2022-10-26T21:34:18,411   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,412      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:18,412      ^~~~~~
2022-10-26T21:34:18,418   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,419      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:18,419      ^~~~~~
2022-10-26T21:34:18,420   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,421      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:18,422      ^~~~~~
2022-10-26T21:34:18,423   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,423      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:18,424      ^~~~~~
2022-10-26T21:34:18,430   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,431    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:18,431                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,432                                                                                                                           P7_PROFILE
2022-10-26T21:34:18,441   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,442    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:18,442                                                ^~~~~~~~~~~
2022-10-26T21:34:18,443                                                P7_PROFILE
2022-10-26T21:34:18,448   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,448    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:18,449                                                ^~~~~~~~~~~
2022-10-26T21:34:18,449                                                P7_PROFILE
2022-10-26T21:34:18,459   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,459    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:18,460                                                ^~~~~~~~~~~
2022-10-26T21:34:18,461                                                P7_PROFILE
2022-10-26T21:34:18,468   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,468    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:18,469                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:18,491   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,492    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:18,492                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:18,492                                                                                                                                        P7_PROFILE
2022-10-26T21:34:18,496   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,497    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:18,498                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:18,498                                                                                                                                        P7_PROFILE
2022-10-26T21:34:18,510   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,511    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,511                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:18,512                                                                                        P7_PROFILE
2022-10-26T21:34:18,516   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,516    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,517                                                                                                         ^~~~~~
2022-10-26T21:34:18,518                                                                                                         P7_GMX
2022-10-26T21:34:18,541   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,542    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,542                                                                                                                      ^~~~~~
2022-10-26T21:34:18,543                                                                                                                      P7_GMX
2022-10-26T21:34:18,547   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,548    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,548                                                                                                                                   ^~~~~~
2022-10-26T21:34:18,549                                                                                                                                   P7_GMX
2022-10-26T21:34:18,574   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,574    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,575                                                                                                                                                ^~~~~~
2022-10-26T21:34:18,575                                                                                                                                                P7_GMX
2022-10-26T21:34:18,584   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,585    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:18,585                                                  ^~~~~~~~~~~
2022-10-26T21:34:18,586                                                  P7_PROFILE
2022-10-26T21:34:18,594   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,595    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:18,595                                                      ^~~~~~~~~~~
2022-10-26T21:34:18,596                                                      P7_PROFILE
2022-10-26T21:34:18,603   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,603    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:18,604                                             ^~~~~~~~~~~
2022-10-26T21:34:18,604                                             P7_PROFILE
2022-10-26T21:34:18,610   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,611    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:18,611                                                                 ^~~~~~~~~~~
2022-10-26T21:34:18,614   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,615    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:18,616                                                                 ^~~~~~~~~~~
2022-10-26T21:34:18,621   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,622    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:18,622                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,623                                                           P7_PROFILE
2022-10-26T21:34:18,630   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,631    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:18,632                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,632                                                           P7_PROFILE
2022-10-26T21:34:18,646   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,647    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:18,648                                    ^~~~~~~~~~~
2022-10-26T21:34:18,649                                    P7_PROFILE
2022-10-26T21:34:18,708   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c
2022-10-26T21:34:18,708   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o
2022-10-26T21:34:18,732   In file included from vendor/hmmer/src/p7_hmmcache.c:15:
2022-10-26T21:34:18,732   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:18,733    #error "No vector implementation enabled"
2022-10-26T21:34:18,733     ^~~~~
2022-10-26T21:34:18,735   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,736      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:18,737      ^~~~~~
2022-10-26T21:34:18,737   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,738      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:18,739      ^~~~~~
2022-10-26T21:34:18,740   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,740      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:18,741      ^~~~~~
2022-10-26T21:34:18,741   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:18,742      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:18,743      ^~~~~~
2022-10-26T21:34:18,743   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,744    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:18,745                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,745                                                                                                                           P7_PROFILE
2022-10-26T21:34:18,746   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,747    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:18,747                                                ^~~~~~~~~~~
2022-10-26T21:34:18,763                                                P7_PROFILE
2022-10-26T21:34:18,765   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,769    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:18,771                                                ^~~~~~~~~~~
2022-10-26T21:34:18,773                                                P7_PROFILE
2022-10-26T21:34:18,773   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,774    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:18,775                                                ^~~~~~~~~~~
2022-10-26T21:34:18,775                                                P7_PROFILE
2022-10-26T21:34:18,776   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,788    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:18,788                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:18,789   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,790    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:18,791                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:18,791                                                                                                                                        P7_PROFILE
2022-10-26T21:34:18,792   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,793    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:18,794                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:18,795                                                                                                                                        P7_PROFILE
2022-10-26T21:34:18,795   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,796    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,796                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:18,797                                                                                        P7_PROFILE
2022-10-26T21:34:18,797   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,804    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,804                                                                                                         ^~~~~~
2022-10-26T21:34:18,809                                                                                                         P7_GMX
2022-10-26T21:34:18,813   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,815    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,817                                                                                                                      ^~~~~~
2022-10-26T21:34:18,828                                                                                                                      P7_GMX
2022-10-26T21:34:18,828   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,829    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,829                                                                                                                                   ^~~~~~
2022-10-26T21:34:18,830                                                                                                                                   P7_GMX
2022-10-26T21:34:18,830   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:18,831    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:18,835                                                                                                                                                ^~~~~~
2022-10-26T21:34:18,835                                                                                                                                                P7_GMX
2022-10-26T21:34:18,836   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,837    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:18,837                                                  ^~~~~~~~~~~
2022-10-26T21:34:18,842                                                  P7_PROFILE
2022-10-26T21:34:18,843   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,844    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:18,845                                                      ^~~~~~~~~~~
2022-10-26T21:34:18,845                                                      P7_PROFILE
2022-10-26T21:34:18,846   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,846    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:18,847                                             ^~~~~~~~~~~
2022-10-26T21:34:18,849                                             P7_PROFILE
2022-10-26T21:34:18,853   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,854    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:18,854                                                                 ^~~~~~~~~~~
2022-10-26T21:34:18,855   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,855    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:18,856                                                                 ^~~~~~~~~~~
2022-10-26T21:34:18,856   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,857    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:18,857                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,858                                                           P7_PROFILE
2022-10-26T21:34:18,859   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,859    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:18,860                                                           ^~~~~~~~~~~
2022-10-26T21:34:18,860                                                           P7_PROFILE
2022-10-26T21:34:18,861   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,861    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:18,862                                    ^~~~~~~~~~~
2022-10-26T21:34:18,863                                    P7_PROFILE
2022-10-26T21:34:18,863   In file included from vendor/hmmer/src/p7_hmmcache.c:16:
2022-10-26T21:34:18,864   vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:18,864      P7_OPROFILE       **list;        /* list of profiles [0 .. n-1]           */
2022-10-26T21:34:18,865      ^~~~~~~~~~~
2022-10-26T21:34:18,865   vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’:
2022-10-26T21:34:18,866   vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,866      P7_OPROFILE *om       = NULL;        /* target profile            */
2022-10-26T21:34:18,867      ^~~~~~~~~~~
2022-10-26T21:34:18,874      P7_PROFILE
2022-10-26T21:34:18,883   In file included from vendor/hmmer/src/p7_hmmcache.c:13:
2022-10-26T21:34:18,883   vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,884      ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc);
2022-10-26T21:34:18,884                                    ^~~~~~~~~~~
2022-10-26T21:34:18,885   vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’
2022-10-26T21:34:18,886        if ( size <= 0 ) { \
2022-10-26T21:34:18,886             ^~~~
2022-10-26T21:34:18,887   vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in
2022-10-26T21:34:18,893      ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc);
2022-10-26T21:34:18,894                                    ^~~~~~~~~~~
2022-10-26T21:34:18,895   vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’
2022-10-26T21:34:18,895        if ( size <= 0 ) { \
2022-10-26T21:34:18,896             ^~~~
2022-10-26T21:34:18,896   vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token
2022-10-26T21:34:18,896      ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc);
2022-10-26T21:34:18,897                                                 ^
2022-10-26T21:34:18,918   vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’
2022-10-26T21:34:18,918        if ( size <= 0 ) { \
2022-10-26T21:34:18,919             ^~~~
2022-10-26T21:34:18,919   vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token
2022-10-26T21:34:18,920      ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc);
2022-10-26T21:34:18,920                                                 ^
2022-10-26T21:34:18,920   vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’
2022-10-26T21:34:18,921        if ( ((p) = malloc(size)) == NULL)  { \
2022-10-26T21:34:18,921                           ^~~~
2022-10-26T21:34:18,922   vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token
2022-10-26T21:34:18,922      ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc);
2022-10-26T21:34:18,923                                                 ^
2022-10-26T21:34:18,923   vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’
2022-10-26T21:34:18,924           esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \
2022-10-26T21:34:18,924                                                                                        ^~~~
2022-10-26T21:34:18,925   vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration]
2022-10-26T21:34:18,925      while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */
2022-10-26T21:34:18,926                       ^~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:18,926                       p7_profile_Reuse
2022-10-26T21:34:18,927   vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration]
2022-10-26T21:34:18,948          if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */
2022-10-26T21:34:18,948                         ^~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:18,949                         p7_profile_Reuse
2022-10-26T21:34:18,950   vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration]
2022-10-26T21:34:18,950      if (om)    p7_oprofile_Destroy(om);
2022-10-26T21:34:18,951                 ^~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:18,951                 p7_profile_Destroy
2022-10-26T21:34:18,952   vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’:
2022-10-26T21:34:18,952   vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,953      n += sizeof(P7_OPROFILE *) * cache->lalloc;     /* cache->list */
2022-10-26T21:34:18,953                  ^~~~~~~~~~~
2022-10-26T21:34:18,954                  P7_PROFILE
2022-10-26T21:34:18,954   vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token
2022-10-26T21:34:18,955      n += sizeof(P7_OPROFILE *) * cache->lalloc;     /* cache->list */
2022-10-26T21:34:18,955                               ^
2022-10-26T21:34:18,956   vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:18,957      for (i = 0; i < cache->n; i++)
2022-10-26T21:34:18,957                    ^
2022-10-26T21:34:18,981   vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration]
2022-10-26T21:34:18,982        n += p7_oprofile_Sizeof(cache->list[i]);
2022-10-26T21:34:18,983             ^~~~~~~~~~~~~~~~~~
2022-10-26T21:34:18,983             p7_profile_Sizeof
2022-10-26T21:34:18,983   vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’:
2022-10-26T21:34:18,984   vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:18,984      P7_OPROFILE *om;
2022-10-26T21:34:18,985      ^~~~~~~~~~~
2022-10-26T21:34:18,985      P7_PROFILE
2022-10-26T21:34:18,985   vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:18,986      for (i = 0; i < cache->n; i++)
2022-10-26T21:34:18,986                    ^
2022-10-26T21:34:18,987   vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union
2022-10-26T21:34:18,987          if (om->name) free(om->name);
2022-10-26T21:34:19,029                ^~
2022-10-26T21:34:19,030   vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union
2022-10-26T21:34:19,031          if (om->name) free(om->name);
2022-10-26T21:34:19,031                               ^~
2022-10-26T21:34:19,032   vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union
2022-10-26T21:34:19,032          if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status;
2022-10-26T21:34:19,032                                         ^~
2022-10-26T21:34:19,033   vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’:
2022-10-26T21:34:19,033   vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,034          for (i = 0; i < cache->n; i++)
2022-10-26T21:34:19,034                        ^
2022-10-26T21:34:19,035   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c
2022-10-26T21:34:19,035   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o
2022-10-26T21:34:19,127   In file included from vendor/hmmer/src/p7_gmxb.c:4:
2022-10-26T21:34:19,127   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:19,128    #error "No vector implementation enabled"
2022-10-26T21:34:19,128     ^~~~~
2022-10-26T21:34:19,129   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,130      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:19,130      ^~~~~~
2022-10-26T21:34:19,131   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,132      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:19,132      ^~~~~~
2022-10-26T21:34:19,133   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,134      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:19,134      ^~~~~~
2022-10-26T21:34:19,135   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,135      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:19,136      ^~~~~~
2022-10-26T21:34:19,137   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,137    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:19,138                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,138                                                                                                                           P7_PROFILE
2022-10-26T21:34:19,146   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,147    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:19,148                                                ^~~~~~~~~~~
2022-10-26T21:34:19,148                                                P7_PROFILE
2022-10-26T21:34:19,149   In file included from vendor/hmmer/src/p7_domain.c:16:
2022-10-26T21:34:19,149   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:19,150    #error "No vector implementation enabled"
2022-10-26T21:34:19,150     ^~~~~
2022-10-26T21:34:19,168   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,168      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:19,169      ^~~~~~
2022-10-26T21:34:19,169   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,170      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:19,170      ^~~~~~
2022-10-26T21:34:19,171   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,171      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:19,172      ^~~~~~
2022-10-26T21:34:19,173   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,173      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:19,173      ^~~~~~
2022-10-26T21:34:19,174   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,174    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:19,175                                                ^~~~~~~~~~~
2022-10-26T21:34:19,175                                                P7_PROFILE
2022-10-26T21:34:19,176   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,176    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:19,177                                                ^~~~~~~~~~~
2022-10-26T21:34:19,177                                                P7_PROFILE
2022-10-26T21:34:19,178   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,178    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:19,179                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:19,186   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,188    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:19,188                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,189                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,190   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,191    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:19,191                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,192                                                                                                                           P7_PROFILE
2022-10-26T21:34:19,193   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,194    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:19,194                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,195                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,196   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,197    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:19,218                                                ^~~~~~~~~~~
2022-10-26T21:34:19,219                                                P7_PROFILE
2022-10-26T21:34:19,219   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,220    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,220                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,221                                                                                        P7_PROFILE
2022-10-26T21:34:19,222   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,222    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:19,222                                                ^~~~~~~~~~~
2022-10-26T21:34:19,223                                                P7_PROFILE
2022-10-26T21:34:19,223   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,224    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,224                                                                                                         ^~~~~~
2022-10-26T21:34:19,225                                                                                                         P7_GMX
2022-10-26T21:34:19,225   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,226    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:19,226                                                ^~~~~~~~~~~
2022-10-26T21:34:19,227                                                P7_PROFILE
2022-10-26T21:34:19,227   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,258    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,258                                                                                                                      ^~~~~~
2022-10-26T21:34:19,259                                                                                                                      P7_GMX
2022-10-26T21:34:19,259   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,260    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:19,260                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:19,261   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,261    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,262                                                                                                                                   ^~~~~~
2022-10-26T21:34:19,262                                                                                                                                   P7_GMX
2022-10-26T21:34:19,263   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,264    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:19,265                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,265                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,266   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,266    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,267                                                                                                                                                ^~~~~~
2022-10-26T21:34:19,302                                                                                                                                                P7_GMX
2022-10-26T21:34:19,303   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,304    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:19,304                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,305                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,305   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,306    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,307                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,338                                                                                        P7_PROFILE
2022-10-26T21:34:19,339   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,339    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:19,340                                                  ^~~~~~~~~~~
2022-10-26T21:34:19,340                                                  P7_PROFILE
2022-10-26T21:34:19,341   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,341    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:19,341                                                      ^~~~~~~~~~~
2022-10-26T21:34:19,342                                                      P7_PROFILE
2022-10-26T21:34:19,342   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,343    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,344                                                                                                         ^~~~~~
2022-10-26T21:34:19,344                                                                                                         P7_GMX
2022-10-26T21:34:19,345   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,345    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,345                                                                                                                      ^~~~~~
2022-10-26T21:34:19,346                                                                                                                      P7_GMX
2022-10-26T21:34:19,346   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,347    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,347                                                                                                                                   ^~~~~~
2022-10-26T21:34:19,478                                                                                                                                   P7_GMX
2022-10-26T21:34:19,479   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,479    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:19,480                                             ^~~~~~~~~~~
2022-10-26T21:34:19,480                                             P7_PROFILE
2022-10-26T21:34:19,480   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,481    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:19,481                                                                 ^~~~~~~~~~~
2022-10-26T21:34:19,482   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,483    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:19,483                                                                 ^~~~~~~~~~~
2022-10-26T21:34:19,484   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,485    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:19,485                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,486                                                           P7_PROFILE
2022-10-26T21:34:19,486   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,487    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:19,487                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,498                                                           P7_PROFILE
2022-10-26T21:34:19,498   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,499    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,499                                                                                                                                                ^~~~~~
2022-10-26T21:34:19,500                                                                                                                                                P7_GMX
2022-10-26T21:34:19,500   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,501    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:19,501                                                  ^~~~~~~~~~~
2022-10-26T21:34:19,502                                                  P7_PROFILE
2022-10-26T21:34:19,502   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,503    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:19,503                                                      ^~~~~~~~~~~
2022-10-26T21:34:19,504                                                      P7_PROFILE
2022-10-26T21:34:19,504   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,505    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:19,505                                             ^~~~~~~~~~~
2022-10-26T21:34:19,505                                             P7_PROFILE
2022-10-26T21:34:19,506   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,506    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:19,507                                                                 ^~~~~~~~~~~
2022-10-26T21:34:19,507   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,518    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:19,518                                                                 ^~~~~~~~~~~
2022-10-26T21:34:19,519   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,519    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:19,520                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,521                                                           P7_PROFILE
2022-10-26T21:34:19,522   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,522    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:19,523                                    ^~~~~~~~~~~
2022-10-26T21:34:19,523                                    P7_PROFILE
2022-10-26T21:34:19,523   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,524    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:19,525                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,525                                                           P7_PROFILE
2022-10-26T21:34:19,525   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,526    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:19,526                                    ^~~~~~~~~~~
2022-10-26T21:34:19,527                                    P7_PROFILE
2022-10-26T21:34:19,527   vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’:
2022-10-26T21:34:19,528   vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,528      network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc)));  // ow, this hurts, but is probably the best way to get the
2022-10-26T21:34:19,529                                  ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,529   vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,529      network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection)));
2022-10-26T21:34:19,530                                  ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,530   vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,531      network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias)));
2022-10-26T21:34:19,531                                  ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,532   vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,532      network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc)));
2022-10-26T21:34:19,533                                  ~^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,533   vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,534      network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore)));
2022-10-26T21:34:19,534                                  ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,535   vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,535      network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
2022-10-26T21:34:19,536                                  ~^~~~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,536   vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:34:19,536      if (ser_size != ptr - (*buf + *n)){
2022-10-26T21:34:19,537                   ^~
2022-10-26T21:34:19,548   vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’:
2022-10-26T21:34:19,548   vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,549      ret_obj->envsc = *((float *) &host_32bit);
2022-10-26T21:34:19,549                        ~^~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,550   vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,550      ret_obj->domcorrection = *((float *) &host_32bit);
2022-10-26T21:34:19,551                                ~^~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,551   vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,552      ret_obj->dombias = *((float *) &host_32bit);
2022-10-26T21:34:19,552                          ~^~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,553   vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,553      ret_obj->oasc = *((float *) &host_32bit);
2022-10-26T21:34:19,554                       ~^~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,554   vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,555      ret_obj->bitscore = *((float *) &host_32bit);
2022-10-26T21:34:19,555                           ~^~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,556   vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,556      ret_obj->lnP = *((double *) &host_64bit);
2022-10-26T21:34:19,556                      ~^~~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,557   vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2022-10-26T21:34:19,568          ret_obj->scores_per_pos[i] = *((float *) &host_32bit);
2022-10-26T21:34:19,568                                        ~^~~~~~~~~~~~~~~~~~~~~~
2022-10-26T21:34:19,569   vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,569      if(ptr - (buf + *n) != obj_size){
2022-10-26T21:34:19,570                          ^~
2022-10-26T21:34:19,570   In file included from vendor/hmmer/src/p7_trace.c:22:
2022-10-26T21:34:19,571   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:19,571    #error "No vector implementation enabled"
2022-10-26T21:34:19,572     ^~~~~
2022-10-26T21:34:19,572   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,573      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:19,573      ^~~~~~
2022-10-26T21:34:19,574   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,575      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:19,575      ^~~~~~
2022-10-26T21:34:19,576   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,576      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:19,576      ^~~~~~
2022-10-26T21:34:19,577   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,588      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:19,588      ^~~~~~
2022-10-26T21:34:19,589   generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c
2022-10-26T21:34:19,589   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o
2022-10-26T21:34:19,590   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,590    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:19,591                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,591                                                                                                                           P7_PROFILE
2022-10-26T21:34:19,592   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,592    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:19,593                                                ^~~~~~~~~~~
2022-10-26T21:34:19,593                                                P7_PROFILE
2022-10-26T21:34:19,594   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,594    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:19,595                                                ^~~~~~~~~~~
2022-10-26T21:34:19,595                                                P7_PROFILE
2022-10-26T21:34:19,596   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,596    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:19,597                                                ^~~~~~~~~~~
2022-10-26T21:34:19,597                                                P7_PROFILE
2022-10-26T21:34:19,608   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,609    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:19,609                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:19,610   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,610    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:19,611                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,611                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,612   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,612    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:19,613                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,613                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,614   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,614    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,615                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,615                                                                                        P7_PROFILE
2022-10-26T21:34:19,616   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,616    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,617                                                                                                         ^~~~~~
2022-10-26T21:34:19,617                                                                                                         P7_GMX
2022-10-26T21:34:19,688   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,689    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,689                                                                                                                      ^~~~~~
2022-10-26T21:34:19,690                                                                                                                      P7_GMX
2022-10-26T21:34:19,690   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,691    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,691                                                                                                                                   ^~~~~~
2022-10-26T21:34:19,692                                                                                                                                   P7_GMX
2022-10-26T21:34:19,692   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,693    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,693                                                                                                                                                ^~~~~~
2022-10-26T21:34:19,694                                                                                                                                                P7_GMX
2022-10-26T21:34:19,694   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,695    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:19,695                                                  ^~~~~~~~~~~
2022-10-26T21:34:19,696                                                  P7_PROFILE
2022-10-26T21:34:19,696   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,697    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:19,697                                                      ^~~~~~~~~~~
2022-10-26T21:34:19,728                                                      P7_PROFILE
2022-10-26T21:34:19,729   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,729    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:19,730                                             ^~~~~~~~~~~
2022-10-26T21:34:19,730                                             P7_PROFILE
2022-10-26T21:34:19,731   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,731    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:19,732                                                                 ^~~~~~~~~~~
2022-10-26T21:34:19,732   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,732    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:19,733                                                                 ^~~~~~~~~~~
2022-10-26T21:34:19,733   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,734    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:19,734                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,735                                                           P7_PROFILE
2022-10-26T21:34:19,735   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,735    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:19,736                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,736                                                           P7_PROFILE
2022-10-26T21:34:19,737   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,737    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:19,768                                    ^~~~~~~~~~~
2022-10-26T21:34:19,768                                    P7_PROFILE
2022-10-26T21:34:19,798   In file included from vendor/hmmer/src/fm_general.c:14:
2022-10-26T21:34:19,799   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:19,799    #error "No vector implementation enabled"
2022-10-26T21:34:19,800     ^~~~~
2022-10-26T21:34:19,801   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,801      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:19,802      ^~~~~~
2022-10-26T21:34:19,803   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,803      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:19,804      ^~~~~~
2022-10-26T21:34:19,805   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,805      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:19,806      ^~~~~~
2022-10-26T21:34:19,806   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,807      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:19,808      ^~~~~~
2022-10-26T21:34:19,809   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,809    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:19,810                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,810                                                                                                                           P7_PROFILE
2022-10-26T21:34:19,811   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,812    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:19,812                                                ^~~~~~~~~~~
2022-10-26T21:34:19,813                                                P7_PROFILE
2022-10-26T21:34:19,828   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,828    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:19,829                                                ^~~~~~~~~~~
2022-10-26T21:34:19,829                                                P7_PROFILE
2022-10-26T21:34:19,830   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,831    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:19,832                                                ^~~~~~~~~~~
2022-10-26T21:34:19,832                                                P7_PROFILE
2022-10-26T21:34:19,833   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,834    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:19,834                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:19,835   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,835    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:19,836                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,837                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,848   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,848    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:19,849                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,849                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,850   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,850    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,851                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,851                                                                                        P7_PROFILE
2022-10-26T21:34:19,852   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,852    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,852                                                                                                         ^~~~~~
2022-10-26T21:34:19,853                                                                                                         P7_GMX
2022-10-26T21:34:19,853   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,854    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,854                                                                                                                      ^~~~~~
2022-10-26T21:34:19,855                                                                                                                      P7_GMX
2022-10-26T21:34:19,856   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,856    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,857                                                                                                                                   ^~~~~~
2022-10-26T21:34:19,857                                                                                                                                   P7_GMX
2022-10-26T21:34:19,868   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,868    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,869                                                                                                                                                ^~~~~~
2022-10-26T21:34:19,869                                                                                                                                                P7_GMX
2022-10-26T21:34:19,870   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,871    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:19,871                                                  ^~~~~~~~~~~
2022-10-26T21:34:19,872                                                  P7_PROFILE
2022-10-26T21:34:19,872   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,873    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:19,873                                                      ^~~~~~~~~~~
2022-10-26T21:34:19,874                                                      P7_PROFILE
2022-10-26T21:34:19,874   In file included from vendor/hmmer/src/p7_prior.c:11:
2022-10-26T21:34:19,874   vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled"
2022-10-26T21:34:19,875    #error "No vector implementation enabled"
2022-10-26T21:34:19,875     ^~~~~
2022-10-26T21:34:19,876   vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,877      P7_OMX     *oxf;  /* one-row Forward matrix, accel pipe       */
2022-10-26T21:34:19,888      ^~~~~~
2022-10-26T21:34:19,888   vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,889      P7_OMX     *oxb;  /* one-row Backward matrix, accel pipe      */
2022-10-26T21:34:19,889      ^~~~~~
2022-10-26T21:34:19,890   vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,890      P7_OMX     *fwd;  /* full Fwd matrix for domain envelopes     */
2022-10-26T21:34:19,890      ^~~~~~
2022-10-26T21:34:19,891   vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’
2022-10-26T21:34:19,891      P7_OMX     *bck;  /* full Bck matrix for domain envelopes     */
2022-10-26T21:34:19,892      ^~~~~~
2022-10-26T21:34:19,892   vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,893    extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om);
2022-10-26T21:34:19,893                                                                                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,893                                                                                                                           P7_PROFILE
2022-10-26T21:34:19,894   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,894    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:19,895                                             ^~~~~~~~~~~
2022-10-26T21:34:19,895                                             P7_PROFILE
2022-10-26T21:34:19,896   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,896    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:19,897                                                                 ^~~~~~~~~~~
2022-10-26T21:34:19,907   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,908    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:19,909                                                                 ^~~~~~~~~~~
2022-10-26T21:34:19,909   vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,910    extern int p7_MSVMu     (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_mmu);
2022-10-26T21:34:19,910                                                ^~~~~~~~~~~
2022-10-26T21:34:19,911                                                P7_PROFILE
2022-10-26T21:34:19,911   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,912    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:19,912                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,913                                                           P7_PROFILE
2022-10-26T21:34:19,913   vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,914    extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda,               double *ret_vmu);
2022-10-26T21:34:19,914                                                ^~~~~~~~~~~
2022-10-26T21:34:19,915                                                P7_PROFILE
2022-10-26T21:34:19,916   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,916    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:19,917                                                           ^~~~~~~~~~~
2022-10-26T21:34:19,917                                                           P7_PROFILE
2022-10-26T21:34:19,936   vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,937    extern int p7_Tau       (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau);
2022-10-26T21:34:19,938                                                ^~~~~~~~~~~
2022-10-26T21:34:19,938                                                P7_PROFILE
2022-10-26T21:34:19,939   vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:19,940    extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq);
2022-10-26T21:34:19,940                                                                                    ^~~~~~~~~~~
2022-10-26T21:34:19,941   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,942    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:19,943                                    ^~~~~~~~~~~
2022-10-26T21:34:19,943                                    P7_PROFILE
2022-10-26T21:34:19,944   vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,944    extern int p7_Builder      (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa);
2022-10-26T21:34:19,945                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,946                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,946   vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,947    extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq,   P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE  **opt_tr,    P7_PROFILE **opt_gm, P7_OPROFILE **opt_om);
2022-10-26T21:34:19,947                                                                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,958                                                                                                                                        P7_PROFILE
2022-10-26T21:34:19,959   vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:19,960    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:19,960                                                                                        ^~~~~~~~~~~
2022-10-26T21:34:19,961                                                                                        P7_PROFILE
2022-10-26T21:34:19,961   vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’:
2022-10-26T21:34:19,961   vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,962      if (ranges[lo].lower > end)     return -1;
2022-10-26T21:34:19,962                           ^
2022-10-26T21:34:19,963   vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,963      if (ranges[hi].upper < start)   return -1;
2022-10-26T21:34:19,964                           ^
2022-10-26T21:34:19,965   vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,965        if      (ranges[mid].lower   < start)  lo = mid + 1; // too far left
2022-10-26T21:34:19,966                                     ^
2022-10-26T21:34:19,966   vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,967      if      (lo>0 &&  ranges[lo-1].upper   >= start && ranges[lo-1].lower <= end) return lo-1;
2022-10-26T21:34:19,978                                             ^~
2022-10-26T21:34:19,979   vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,979      if      (lo>0 &&  ranges[lo-1].upper   >= start && ranges[lo-1].lower <= end) return lo-1;
2022-10-26T21:34:19,980                                                                            ^~
2022-10-26T21:34:19,980   vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,981      else if (         ranges[lo].upper     >= start && ranges[lo].lower   <= end) return lo;
2022-10-26T21:34:19,982                                             ^~
2022-10-26T21:34:19,982   vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,983      else if (         ranges[lo].upper     >= start && ranges[lo].lower   <= end) return lo;
2022-10-26T21:34:19,983                                                                            ^~
2022-10-26T21:34:19,984   vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’:
2022-10-26T21:34:19,984   vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
2022-10-26T21:34:19,985            while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) {
2022-10-26T21:34:19,985                       ^~
2022-10-26T21:34:19,986   vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare]
2022-10-26T21:34:19,987            while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) {
2022-10-26T21:34:19,998                                                                                                     ^~
2022-10-26T21:34:19,999   vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:19,999    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:20,000                                                                                                         ^~~~~~
2022-10-26T21:34:20,001                                                                                                         P7_GMX
2022-10-26T21:34:20,001   vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:20,002    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:20,003                                                                                                                      ^~~~~~
2022-10-26T21:34:20,003                                                                                                                      P7_GMX
2022-10-26T21:34:20,004   vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:20,004    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:20,005                                                                                                                                   ^~~~~~
2022-10-26T21:34:20,005                                                                                                                                   P7_GMX
2022-10-26T21:34:20,005   In file included from vendor/hmmer/src/fm_general.c:12:
2022-10-26T21:34:20,006   vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:34:20,006    #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
2022-10-26T21:34:20,007                                       ^
2022-10-26T21:34:20,018   vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’
2022-10-26T21:34:20,019              int start = ESL_MAX(first,          meta->ambig_list->ranges[pos].lower);
2022-10-26T21:34:20,019                          ^~~~~~~
2022-10-26T21:34:20,020   vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
2022-10-26T21:34:20,020    #define ESL_MAX(a,b)          (((a)>(b))?(a):(b))
2022-10-26T21:34:20,021                                                 ^~~
2022-10-26T21:34:20,021   vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’
2022-10-26T21:34:20,022              int start = ESL_MAX(first,          meta->ambig_list->ranges[pos].lower);
2022-10-26T21:34:20,022                          ^~~~~~~
2022-10-26T21:34:20,023   vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:34:20,023    #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
2022-10-26T21:34:20,024                                       ^
2022-10-26T21:34:20,024   vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’
2022-10-26T21:34:20,025              int end =   ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper);
2022-10-26T21:34:20,025                          ^~~~~~~
2022-10-26T21:34:20,025   vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
2022-10-26T21:34:20,026    #define ESL_MIN(a,b)          (((a)<(b))?(a):(b))
2022-10-26T21:34:20,026                                                 ^~~
2022-10-26T21:34:20,027   vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’
2022-10-26T21:34:20,027              int end =   ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper);
2022-10-26T21:34:20,038                          ^~~~~~~
2022-10-26T21:34:20,038   vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:34:20,039              for (j= start; j<=end; j++)
2022-10-26T21:34:20,039                              ^~
2022-10-26T21:34:20,040   vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’?
2022-10-26T21:34:20,040    extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck,
2022-10-26T21:34:20,041                                                                                                                                                ^~~~~~
2022-10-26T21:34:20,041                                                                                                                                                P7_GMX
2022-10-26T21:34:20,042   vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:20,043    extern P7_SCOREDATA   *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm );
2022-10-26T21:34:20,043                                                  ^~~~~~~~~~~
2022-10-26T21:34:20,044                                                  P7_PROFILE
2022-10-26T21:34:20,044   vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’:
2022-10-26T21:34:20,045   vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
2022-10-26T21:34:20,045         (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) ||
2022-10-26T21:34:20,046                                                                              ^~
2022-10-26T21:34:20,046   vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
2022-10-26T21:34:20,047         (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp)  != compressed_bytes) ||
2022-10-26T21:34:20,047                                                                       ^~
2022-10-26T21:34:20,058   vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:20,058    extern int            p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data );
2022-10-26T21:34:20,059                                                      ^~~~~~~~~~~
2022-10-26T21:34:20,059                                                      P7_PROFILE
2022-10-26T21:34:20,060   vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:20,060    extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap);
2022-10-26T21:34:20,061                                             ^~~~~~~~~~~
2022-10-26T21:34:20,061                                             P7_PROFILE
2022-10-26T21:34:20,062   vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:20,062    extern int p7_pli_NewModel          (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg);
2022-10-26T21:34:20,063                                                                 ^~~~~~~~~~~
2022-10-26T21:34:20,063   vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’
2022-10-26T21:34:20,064    extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om);
2022-10-26T21:34:20,064                                                                 ^~~~~~~~~~~
2022-10-26T21:34:20,065   vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’:
2022-10-26T21:34:20,065   vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:20,066      for (i=0; i<meta->seq_count; i++) {
2022-10-26T21:34:20,066                 ^
2022-10-26T21:34:20,067   vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:34:20,067            fread(meta->seq_data[i].name,   sizeof(char), meta->seq_data[i].name_length+1   , meta->fp) !=  meta->seq_data[i].name_length+1  ||
2022-10-26T21:34:20,078                                                                                                        ^~
2022-10-26T21:34:20,079   vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:34:20,079            fread(meta->seq_data[i].acc,    sizeof(char), meta->seq_data[i].acc_length+1    , meta->fp) !=  meta->seq_data[i].acc_length+1  ||
2022-10-26T21:34:20,080                                                                                                        ^~
2022-10-26T21:34:20,080   vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:20,081    extern int p7_Pipeline              (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th);
2022-10-26T21:34:20,081                                                           ^~~~~~~~~~~
2022-10-26T21:34:20,082                                                           P7_PROFILE
2022-10-26T21:34:20,082   vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:20,083    extern int p7_Pipeline_LongTarget   (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data,
2022-10-26T21:34:20,083                                                           ^~~~~~~~~~~
2022-10-26T21:34:20,084                                                           P7_PROFILE
2022-10-26T21:34:20,084   vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:34:20,085            fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) !=  meta->seq_data[i].source_length+1  ||
2022-10-26T21:34:20,085                                                                                                        ^~
2022-10-26T21:34:20,086   vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2022-10-26T21:34:20,086            fread(meta->seq_data[i].desc,   sizeof(char), meta->seq_data[i].desc_length+1   , meta->fp) !=  meta->seq_data[i].desc_length+1
2022-10-26T21:34:20,087                                                                                                        ^~
2022-10-26T21:34:20,087   vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:20,097      for (i=0; i<meta->ambig_list->count; i++) {
2022-10-26T21:34:20,097                 ^
2022-10-26T21:34:20,098   vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:20,098        for (i=0; i<meta->seq_count; i++)
2022-10-26T21:34:20,099                   ^
2022-10-26T21:34:20,099   vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’:
2022-10-26T21:34:20,100   vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-10-26T21:34:20,100        for (i=0; i<meta->seq_count; i++) {
2022-10-26T21:34:20,101                   ^
2022-10-26T21:34:20,101   vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’?
2022-10-26T21:34:20,102    extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1,
2022-10-26T21:34:20,102                                    ^~~~~~~~~~~
2022-10-26T21:34:20,103                                    P7_PROFILE
2022-10-26T21:34:20,169   ... yes
2022-10-26T21:34:20,169   checking whether <strings.h> can be included... yes
2022-10-26T21:34:20,170   checking whether <sys/stat.h> can be included... yes
2022-10-26T21:34:20,170   checking whether <sys/types.h> can be included... yes
2022-10-26T21:34:20,171   checking whether <unistd.h> can be included... yes
2022-10-26T21:34:20,171   checking whether <endian.h> can be included... yes
2022-10-26T21:34:20,172   checking whether <netinet/in.h> can be included... yes
2022-10-26T21:34:20,172   checking whether <sys/param.h> can be included... yes
2022-10-26T21:34:20,172   checking whether <sys/sysctl.h> can be included... yes
2022-10-26T21:34:20,173   checking whether function 'aligned_alloc' is available... no
2022-10-26T21:34:20,173   checking whether function 'erfc' is available... no
2022-10-26T21:34:20,174   checking whether function 'getpid' is available... yes
2022-10-26T21:34:20,174   checking whether function '_mm_malloc' is available... no
2022-10-26T21:34:20,175   checking whether function 'popen' is available... yes
2022-10-26T21:34:20,175   checking whether function 'posix_memalign' is available... yes
2022-10-26T21:34:20,176   checking whether function 'strcasecmp' is available... yes
2022-10-26T21:34:20,176   checking whether function 'strsep' is available... yes
2022-10-26T21:34:20,177   checking whether function 'sysconf' is available... yes
2022-10-26T21:34:20,188   checking whether function 'sysctl' is available... yes
2022-10-26T21:34:20,188   checking whether function 'times' is available... yes
2022-10-26T21:34:20,189   checking whether function 'fseeko' is available... yes
2022-10-26T21:34:20,189   checking whether <endian.h> can be included... yes
2022-10-26T21:34:20,190   checking whether <inttypes.h> can be included... yes
2022-10-26T21:34:20,190   checking whether <stdint.h> can be included... yes
2022-10-26T21:34:20,191   checking whether <unistd.h> can be included... yes
2022-10-26T21:34:20,191   checking whether <sys/types.h> can be included... yes
2022-10-26T21:34:20,191   checking whether <netinet/in.h> can be included... yes
2022-10-26T21:34:20,192   checking whether <sys/param.h> can be included... yes
2022-10-26T21:34:20,192   checking whether <sys/sysctl.h> can be included... yes
2022-10-26T21:34:20,193   checking whether function 'mkstemp' is available... yes
2022-10-26T21:34:20,193   checking whether function 'popen' is available... yes
2022-10-26T21:34:20,194   checking whether function 'putenv' is available... yes
2022-10-26T21:34:20,194   checking whether function 'strcasecmp' is available... yes
2022-10-26T21:34:20,195   checking whether function 'strsep' is available... yes
2022-10-26T21:34:20,195   checking whether function 'times' is available... yes
2022-10-26T21:34:20,195   checking whether function 'getpid' is available... yes
2022-10-26T21:34:20,196   checking whether function 'sysctl' is available... yes
2022-10-26T21:34:20,196   checking whether function 'sysconf' is available... yes
2022-10-26T21:34:20,197   checking whether function 'getcwd' is available... yes
2022-10-26T21:34:20,208   checking whether function 'chmod' is available... yes
2022-10-26T21:34:20,208   checking whether function 'stat' is available... yes
2022-10-26T21:34:20,209   checking whether function 'fstat' is available... yes
2022-10-26T21:34:20,210   checking whether function 'erfc' is available... no
2022-10-26T21:34:20,211   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2022-10-26T21:34:20,623   ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1
2022-10-26T21:34:20,735   [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp9j1r7oq8[/]
2022-10-26T21:34:20,736   [bold magenta]cwd[/]: /tmp/pip-wheel-15msvlp8/pyhmmer_1f557c2e11dc4f9985aeab4d9198b637
2022-10-26T21:34:20,736   Building wheel for pyhmmer (pyproject.toml): finished with status 'error'
2022-10-26T21:34:20,763   ERROR: Failed building wheel for pyhmmer
2022-10-26T21:34:20,770 Failed to build pyhmmer
2022-10-26T21:34:20,773 ERROR: Failed to build one or more wheels
2022-10-26T21:34:20,776 Exception information:
2022-10-26T21:34:20,776 Traceback (most recent call last):
2022-10-26T21:34:20,776   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
2022-10-26T21:34:20,776     status = run_func(*args)
2022-10-26T21:34:20,776   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
2022-10-26T21:34:20,776     return func(self, options, args)
2022-10-26T21:34:20,776   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 201, in run
2022-10-26T21:34:20,776     raise CommandError("Failed to build one or more wheels")
2022-10-26T21:34:20,776 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2022-10-26T21:34:20,787 Removed build tracker: '/tmp/pip-build-tracker-d9eqm77j'