2022-10-26T21:41:01,719 Created temporary directory: /tmp/pip-ephem-wheel-cache-k0knx5gn 2022-10-26T21:41:01,721 Created temporary directory: /tmp/pip-build-tracker-v27w_od2 2022-10-26T21:41:01,721 Initialized build tracking at /tmp/pip-build-tracker-v27w_od2 2022-10-26T21:41:01,721 Created build tracker: /tmp/pip-build-tracker-v27w_od2 2022-10-26T21:41:01,721 Entered build tracker: /tmp/pip-build-tracker-v27w_od2 2022-10-26T21:41:01,722 Created temporary directory: /tmp/pip-wheel-al_qx3bt 2022-10-26T21:41:01,725 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-26T21:41:01,728 Created temporary directory: /tmp/pip-ephem-wheel-cache-gf_7dhkv 2022-10-26T21:41:01,750 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-26T21:41:01,754 2 location(s) to search for versions of pyhmmer: 2022-10-26T21:41:01,754 * https://pypi.org/simple/pyhmmer/ 2022-10-26T21:41:01,754 * https://www.piwheels.org/simple/pyhmmer/ 2022-10-26T21:41:01,754 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-10-26T21:41:01,755 Getting page https://pypi.org/simple/pyhmmer/ 2022-10-26T21:41:01,756 Found index url https://pypi.org/simple 2022-10-26T21:41:01,814 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-10-26T21:41:01,887 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2022-10-26T21:41:01,944 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,944 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,944 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/25/4a/2db5464d2bb8e41bb346060fd9c3ceae2043c60af6621f04c8e49dbecae9/pyhmmer-0.6.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,981 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/a0/4d7a8f68dc85cd4cf70a39afc592ab67a2e703149887dc78f4d2031a3d1c/pyhmmer-0.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,981 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/b8/a5edf3701cb051f9b8f397cc0ad5312bad4eb6eb761c99ec294b21c922f7/pyhmmer-0.6.2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,981 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,981 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,981 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,982 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,982 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,982 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,983 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2022-10-26T21:41:01,983 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,983 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,983 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/d1/c6278687d5c1b292bdb69419cb3c241a33cd049487e3f6f8c1ea49ae2f63/pyhmmer-0.6.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,984 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9b/fd/18eb2593b4e78f2b4c354ab2c27f44c7005c871cbb88f5979363f447a3f7/pyhmmer-0.6.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,984 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/3d/29a3b664affa3d543bf179c4bc564028436d2d664750d07cb6747610d0bb/pyhmmer-0.6.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,984 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/8a/c9f6d67ff2081be71d5bab224f86dc9fbba04b3a9005d98d1bd4e7abe711/pyhmmer-0.6.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,984 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/40/6efcf88705d32d27951d1d664a8cbb2d43e7b31afcd44c281b24d02f6f0d/pyhmmer-0.6.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,984 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,984 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,985 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,985 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,985 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,985 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,985 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/d4/c43a67e5b31e63a52e7a4204502adf4e43e7c3d5b2f453789d73935dd027/pyhmmer-0.6.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,986 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-10-26T21:41:01,986 Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3 2022-10-26T21:41:01,987 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-10-26T21:41:01,987 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-10-26T21:41:01,988 Found index url https://www.piwheels.org/simple 2022-10-26T21:41:02,179 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-10-26T21:41:02,180 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-10-26T21:41:02,180 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-10-26T21:41:02,202 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-10-26T21:41:02,219 Collecting pyhmmer==0.6.3 2022-10-26T21:41:02,221 Created temporary directory: /tmp/pip-unpack-7l2248pu 2022-10-26T21:41:02,268 Downloading pyhmmer-0.6.3.tar.gz (9.9 MB) 2022-10-26T21:41:05,858 Added pyhmmer==0.6.3 from https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz to build tracker '/tmp/pip-build-tracker-v27w_od2' 2022-10-26T21:41:05,862 Created temporary directory: /tmp/pip-build-env-x_r7t448 2022-10-26T21:41:05,869 Installing build dependencies: started 2022-10-26T21:41:05,870 Running command pip subprocess to install build dependencies 2022-10-26T21:41:07,066 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-10-26T21:41:07,438 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-26T21:41:07,464 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-26T21:41:09,118 Collecting setuptools>=46.4 2022-10-26T21:41:09,254 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB) 2022-10-26T21:41:10,605 Collecting cython~=0.29.16 2022-10-26T21:41:11,080 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-10-26T21:41:13,007 Installing collected packages: setuptools, cython 2022-10-26T21:41:18,325 Creating /tmp/pip-build-env-x_r7t448/overlay/bin 2022-10-26T21:41:18,328 changing mode of /tmp/pip-build-env-x_r7t448/overlay/bin/cygdb to 755 2022-10-26T21:41:18,330 changing mode of /tmp/pip-build-env-x_r7t448/overlay/bin/cython to 755 2022-10-26T21:41:18,332 changing mode of /tmp/pip-build-env-x_r7t448/overlay/bin/cythonize to 755 2022-10-26T21:41:18,354 Successfully installed cython-0.29.32 setuptools-65.5.0 2022-10-26T21:41:18,677 Installing build dependencies: finished with status 'done' 2022-10-26T21:41:18,683 Getting requirements to build wheel: started 2022-10-26T21:41:18,684 Running command Getting requirements to build wheel 2022-10-26T21:41:19,798 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-10-26T21:41:20,058 Getting requirements to build wheel: finished with status 'done' 2022-10-26T21:41:20,074 Installing backend dependencies: started 2022-10-26T21:41:20,075 Running command pip subprocess to install backend dependencies 2022-10-26T21:41:21,259 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-10-26T21:41:21,632 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-26T21:41:21,656 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-26T21:41:22,094 Collecting wheel 2022-10-26T21:41:22,112 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-10-26T21:41:23,525 Installing collected packages: wheel 2022-10-26T21:41:23,702 Creating /tmp/pip-build-env-x_r7t448/normal/bin 2022-10-26T21:41:23,704 changing mode of /tmp/pip-build-env-x_r7t448/normal/bin/wheel to 755 2022-10-26T21:41:23,717 Successfully installed wheel-0.37.1 2022-10-26T21:41:23,930 Installing backend dependencies: finished with status 'done' 2022-10-26T21:41:23,932 Created temporary directory: /tmp/pip-modern-metadata-c8zmctx_ 2022-10-26T21:41:23,935 Preparing metadata (pyproject.toml): started 2022-10-26T21:41:23,936 Running command Preparing metadata (pyproject.toml) 2022-10-26T21:41:25,004 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-10-26T21:41:25,158 running dist_info 2022-10-26T21:41:25,172 creating /tmp/pip-modern-metadata-c8zmctx_/pyhmmer.egg-info 2022-10-26T21:41:25,177 writing /tmp/pip-modern-metadata-c8zmctx_/pyhmmer.egg-info/PKG-INFO 2022-10-26T21:41:25,181 writing dependency_links to /tmp/pip-modern-metadata-c8zmctx_/pyhmmer.egg-info/dependency_links.txt 2022-10-26T21:41:25,183 writing requirements to /tmp/pip-modern-metadata-c8zmctx_/pyhmmer.egg-info/requires.txt 2022-10-26T21:41:25,184 writing top-level names to /tmp/pip-modern-metadata-c8zmctx_/pyhmmer.egg-info/top_level.txt 2022-10-26T21:41:25,186 writing manifest file '/tmp/pip-modern-metadata-c8zmctx_/pyhmmer.egg-info/SOURCES.txt' 2022-10-26T21:41:25,219 reading manifest file '/tmp/pip-modern-metadata-c8zmctx_/pyhmmer.egg-info/SOURCES.txt' 2022-10-26T21:41:25,222 reading manifest template 'MANIFEST.in' 2022-10-26T21:41:25,827 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-10-26T21:41:25,828 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-10-26T21:41:25,829 no previously-included directories found matching 'vendor/easel/demotic' 2022-10-26T21:41:25,831 no previously-included directories found matching 'vendor/easel/documentation' 2022-10-26T21:41:25,832 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-10-26T21:41:25,833 no previously-included directories found matching 'vendor/easel/miniapps' 2022-10-26T21:41:25,834 no previously-included directories found matching 'vendor/easel/testsuite' 2022-10-26T21:41:25,835 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-10-26T21:41:25,836 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-10-26T21:41:25,837 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-10-26T21:41:25,838 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-10-26T21:41:25,840 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-10-26T21:41:25,841 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-10-26T21:41:25,842 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-10-26T21:41:25,842 adding license file 'COPYING' 2022-10-26T21:41:25,869 writing manifest file '/tmp/pip-modern-metadata-c8zmctx_/pyhmmer.egg-info/SOURCES.txt' 2022-10-26T21:41:25,871 creating '/tmp/pip-modern-metadata-c8zmctx_/pyhmmer-0.6.3.dist-info' 2022-10-26T21:41:25,939 adding license file "COPYING" (matched pattern "COPYING*") 2022-10-26T21:41:26,099 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-26T21:41:26,107 Source in /tmp/pip-wheel-al_qx3bt/pyhmmer_71e0c8dedd1b40d68885ac9cdbd60538 has version 0.6.3, which satisfies requirement pyhmmer==0.6.3 from https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz 2022-10-26T21:41:26,108 Removed pyhmmer==0.6.3 from https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz from build tracker '/tmp/pip-build-tracker-v27w_od2' 2022-10-26T21:41:26,115 Created temporary directory: /tmp/pip-unpack-vxks3rdz 2022-10-26T21:41:26,116 Building wheels for collected packages: pyhmmer 2022-10-26T21:41:26,121 Created temporary directory: /tmp/pip-wheel-lz31hji_ 2022-10-26T21:41:26,121 Destination directory: /tmp/pip-wheel-lz31hji_ 2022-10-26T21:41:26,123 Building wheel for pyhmmer (pyproject.toml): started 2022-10-26T21:41:26,125 Running command Building wheel for pyhmmer (pyproject.toml) 2022-10-26T21:41:27,181 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-10-26T21:41:27,352 running bdist_wheel 2022-10-26T21:41:27,367 running build 2022-10-26T21:41:27,367 running build_py 2022-10-26T21:41:27,375 creating build 2022-10-26T21:41:27,376 creating build/lib.linux-armv7l-cpython-39 2022-10-26T21:41:27,376 creating build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:27,377 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:27,379 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:27,382 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:27,384 running egg_info 2022-10-26T21:41:27,400 writing pyhmmer.egg-info/PKG-INFO 2022-10-26T21:41:27,403 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-10-26T21:41:27,405 writing requirements to pyhmmer.egg-info/requires.txt 2022-10-26T21:41:27,407 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-10-26T21:41:27,419 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-10-26T21:41:27,438 reading manifest template 'MANIFEST.in' 2022-10-26T21:41:28,025 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-10-26T21:41:28,027 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-10-26T21:41:28,029 no previously-included directories found matching 'vendor/easel/demotic' 2022-10-26T21:41:28,031 no previously-included directories found matching 'vendor/easel/documentation' 2022-10-26T21:41:28,032 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-10-26T21:41:28,034 no previously-included directories found matching 'vendor/easel/miniapps' 2022-10-26T21:41:28,035 no previously-included directories found matching 'vendor/easel/testsuite' 2022-10-26T21:41:28,037 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-10-26T21:41:28,038 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-10-26T21:41:28,040 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-10-26T21:41:28,041 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-10-26T21:41:28,043 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-10-26T21:41:28,044 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-10-26T21:41:28,046 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-10-26T21:41:28,046 adding license file 'COPYING' 2022-10-26T21:41:28,083 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-10-26T21:41:28,090 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,090 !! 2022-10-26T21:41:28,090 ############################ 2022-10-26T21:41:28,090 # Package would be ignored # 2022-10-26T21:41:28,091 ############################ 2022-10-26T21:41:28,091 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-10-26T21:41:28,091 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,091 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-10-26T21:41:28,091 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,091 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,092 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-10-26T21:41:28,092 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,092 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,092 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,092 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,092 documentation page. 2022-10-26T21:41:28,093 !! 2022-10-26T21:41:28,093 check.warn(importable) 2022-10-26T21:41:28,093 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,093 !! 2022-10-26T21:41:28,094 ############################ 2022-10-26T21:41:28,094 # Package would be ignored # 2022-10-26T21:41:28,094 ############################ 2022-10-26T21:41:28,094 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-10-26T21:41:28,094 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,094 'pyhmmer.reexports' has been automatically added to the distribution only 2022-10-26T21:41:28,094 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,095 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,095 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-10-26T21:41:28,095 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,095 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,095 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,095 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,095 documentation page. 2022-10-26T21:41:28,096 !! 2022-10-26T21:41:28,096 check.warn(importable) 2022-10-26T21:41:28,096 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,096 !! 2022-10-26T21:41:28,097 ############################ 2022-10-26T21:41:28,097 # Package would be ignored # 2022-10-26T21:41:28,097 ############################ 2022-10-26T21:41:28,097 Python recognizes 'pyhmmer.tests' as an importable package, 2022-10-26T21:41:28,097 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,097 'pyhmmer.tests' has been automatically added to the distribution only 2022-10-26T21:41:28,097 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,098 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,098 Please make sure that 'pyhmmer.tests' is included as a package by using 2022-10-26T21:41:28,098 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,098 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,098 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,098 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,098 documentation page. 2022-10-26T21:41:28,099 !! 2022-10-26T21:41:28,099 check.warn(importable) 2022-10-26T21:41:28,099 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,099 !! 2022-10-26T21:41:28,100 ############################ 2022-10-26T21:41:28,100 # Package would be ignored # 2022-10-26T21:41:28,100 ############################ 2022-10-26T21:41:28,100 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-10-26T21:41:28,100 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,100 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-10-26T21:41:28,101 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,101 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,101 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-10-26T21:41:28,101 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,101 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,101 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,101 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,102 documentation page. 2022-10-26T21:41:28,102 !! 2022-10-26T21:41:28,102 check.warn(importable) 2022-10-26T21:41:28,102 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,102 !! 2022-10-26T21:41:28,103 ############################ 2022-10-26T21:41:28,103 # Package would be ignored # 2022-10-26T21:41:28,103 ############################ 2022-10-26T21:41:28,103 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-10-26T21:41:28,103 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,103 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-10-26T21:41:28,103 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,104 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,104 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-10-26T21:41:28,104 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,104 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,104 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,104 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,105 documentation page. 2022-10-26T21:41:28,105 !! 2022-10-26T21:41:28,105 check.warn(importable) 2022-10-26T21:41:28,105 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,105 !! 2022-10-26T21:41:28,106 ############################ 2022-10-26T21:41:28,106 # Package would be ignored # 2022-10-26T21:41:28,106 ############################ 2022-10-26T21:41:28,106 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-10-26T21:41:28,106 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,106 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-10-26T21:41:28,106 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,106 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,107 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-10-26T21:41:28,107 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,107 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,107 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,107 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,107 documentation page. 2022-10-26T21:41:28,108 !! 2022-10-26T21:41:28,108 check.warn(importable) 2022-10-26T21:41:28,108 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,108 !! 2022-10-26T21:41:28,108 ############################ 2022-10-26T21:41:28,109 # Package would be ignored # 2022-10-26T21:41:28,109 ############################ 2022-10-26T21:41:28,109 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-10-26T21:41:28,109 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,109 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-10-26T21:41:28,109 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,109 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,110 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-10-26T21:41:28,110 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,110 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,110 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,110 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,110 documentation page. 2022-10-26T21:41:28,111 !! 2022-10-26T21:41:28,111 check.warn(importable) 2022-10-26T21:41:28,111 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,111 !! 2022-10-26T21:41:28,112 ############################ 2022-10-26T21:41:28,112 # Package would be ignored # 2022-10-26T21:41:28,112 ############################ 2022-10-26T21:41:28,112 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-10-26T21:41:28,112 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,112 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-10-26T21:41:28,112 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,112 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,113 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-10-26T21:41:28,113 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,113 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,113 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,113 documentation page. 2022-10-26T21:41:28,114 !! 2022-10-26T21:41:28,114 check.warn(importable) 2022-10-26T21:41:28,114 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,114 !! 2022-10-26T21:41:28,114 ############################ 2022-10-26T21:41:28,115 # Package would be ignored # 2022-10-26T21:41:28,115 ############################ 2022-10-26T21:41:28,115 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-10-26T21:41:28,115 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,115 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-10-26T21:41:28,115 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,115 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,115 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-10-26T21:41:28,116 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,116 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,116 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,116 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,116 documentation page. 2022-10-26T21:41:28,117 !! 2022-10-26T21:41:28,117 check.warn(importable) 2022-10-26T21:41:28,117 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,117 !! 2022-10-26T21:41:28,117 ############################ 2022-10-26T21:41:28,117 # Package would be ignored # 2022-10-26T21:41:28,118 ############################ 2022-10-26T21:41:28,118 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-10-26T21:41:28,118 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,118 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-10-26T21:41:28,118 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,118 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,118 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-10-26T21:41:28,119 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,119 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,119 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,119 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,119 documentation page. 2022-10-26T21:41:28,120 !! 2022-10-26T21:41:28,120 check.warn(importable) 2022-10-26T21:41:28,120 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,120 !! 2022-10-26T21:41:28,120 ############################ 2022-10-26T21:41:28,121 # Package would be ignored # 2022-10-26T21:41:28,121 ############################ 2022-10-26T21:41:28,121 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-10-26T21:41:28,121 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,121 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-10-26T21:41:28,121 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,121 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,122 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-10-26T21:41:28,122 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,122 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,122 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,122 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,122 documentation page. 2022-10-26T21:41:28,123 !! 2022-10-26T21:41:28,123 check.warn(importable) 2022-10-26T21:41:28,123 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,123 !! 2022-10-26T21:41:28,123 ############################ 2022-10-26T21:41:28,123 # Package would be ignored # 2022-10-26T21:41:28,124 ############################ 2022-10-26T21:41:28,124 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-10-26T21:41:28,124 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,124 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-10-26T21:41:28,124 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,124 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,124 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-10-26T21:41:28,125 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,125 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,125 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,125 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,125 documentation page. 2022-10-26T21:41:28,125 !! 2022-10-26T21:41:28,126 check.warn(importable) 2022-10-26T21:41:28,126 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,126 !! 2022-10-26T21:41:28,126 ############################ 2022-10-26T21:41:28,126 # Package would be ignored # 2022-10-26T21:41:28,126 ############################ 2022-10-26T21:41:28,127 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-10-26T21:41:28,127 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,127 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-10-26T21:41:28,127 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,127 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,128 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-10-26T21:41:28,128 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,128 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,129 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,129 documentation page. 2022-10-26T21:41:28,129 !! 2022-10-26T21:41:28,130 check.warn(importable) 2022-10-26T21:41:28,130 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.test_easel' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,130 !! 2022-10-26T21:41:28,131 ############################ 2022-10-26T21:41:28,131 # Package would be ignored # 2022-10-26T21:41:28,131 ############################ 2022-10-26T21:41:28,131 Python recognizes 'pyhmmer.tests.test_easel' as an importable package, 2022-10-26T21:41:28,132 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,132 'pyhmmer.tests.test_easel' has been automatically added to the distribution only 2022-10-26T21:41:28,132 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,132 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,132 Please make sure that 'pyhmmer.tests.test_easel' is included as a package by using 2022-10-26T21:41:28,133 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,133 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,133 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,133 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,134 documentation page. 2022-10-26T21:41:28,135 !! 2022-10-26T21:41:28,135 check.warn(importable) 2022-10-26T21:41:28,135 /tmp/pip-build-env-x_r7t448/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.test_plan7' as data is deprecated, please list it in `packages`. 2022-10-26T21:41:28,136 !! 2022-10-26T21:41:28,136 ############################ 2022-10-26T21:41:28,136 # Package would be ignored # 2022-10-26T21:41:28,137 ############################ 2022-10-26T21:41:28,137 Python recognizes 'pyhmmer.tests.test_plan7' as an importable package, 2022-10-26T21:41:28,137 but it is not listed in the `packages` configuration of setuptools. 2022-10-26T21:41:28,137 'pyhmmer.tests.test_plan7' has been automatically added to the distribution only 2022-10-26T21:41:28,137 because it may contain data files, but this behavior is likely to change 2022-10-26T21:41:28,138 in future versions of setuptools (and therefore is considered deprecated). 2022-10-26T21:41:28,138 Please make sure that 'pyhmmer.tests.test_plan7' is included as a package by using 2022-10-26T21:41:28,138 the `packages` configuration field or the proper discovery methods 2022-10-26T21:41:28,138 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-26T21:41:28,138 instead of `find_packages(...)`/`find:`). 2022-10-26T21:41:28,139 You can read more about "package discovery" and "data files" on setuptools 2022-10-26T21:41:28,139 documentation page. 2022-10-26T21:41:28,140 !! 2022-10-26T21:41:28,140 check.warn(importable) 2022-10-26T21:41:28,140 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,140 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,141 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,141 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,141 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,141 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,147 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,149 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,152 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,154 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,156 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,159 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,167 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-10-26T21:41:28,169 creating build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-10-26T21:41:28,169 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-10-26T21:41:28,172 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-10-26T21:41:28,174 creating build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-26T21:41:28,175 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-26T21:41:28,177 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-26T21:41:28,179 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-26T21:41:28,181 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-26T21:41:28,183 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-26T21:41:28,185 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-26T21:41:28,187 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-10-26T21:41:28,189 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-26T21:41:28,190 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-26T21:41:28,192 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-26T21:41:28,194 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-26T21:41:28,196 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-26T21:41:28,198 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-26T21:41:28,201 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-10-26T21:41:28,203 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2022-10-26T21:41:28,204 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2022-10-26T21:41:28,206 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2022-10-26T21:41:28,207 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2022-10-26T21:41:28,209 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-26T21:41:28,210 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-26T21:41:28,213 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-26T21:41:28,217 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-26T21:41:28,221 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-10-26T21:41:28,274 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,275 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,278 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,280 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,283 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,286 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,289 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,291 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,295 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,299 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,302 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,304 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,307 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,311 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,336 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,338 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,392 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-10-26T21:41:28,454 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-26T21:41:28,454 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-26T21:41:28,462 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-26T21:41:28,467 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-26T21:41:28,475 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-26T21:41:28,481 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-26T21:41:28,489 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-26T21:41:28,498 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-10-26T21:41:28,621 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-26T21:41:28,622 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-26T21:41:28,626 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-26T21:41:28,632 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-26T21:41:28,637 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-10-26T21:41:28,736 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-10-26T21:41:28,737 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-10-26T21:41:28,740 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-10-26T21:41:28,743 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-10-26T21:41:28,746 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-26T21:41:28,747 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-26T21:41:28,750 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-26T21:41:28,753 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-26T21:41:28,756 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-10-26T21:41:28,759 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-26T21:41:28,761 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-26T21:41:28,785 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-26T21:41:28,795 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-26T21:41:28,877 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-26T21:41:28,883 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-26T21:41:28,886 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-26T21:41:28,889 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-10-26T21:41:28,891 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-26T21:41:28,892 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-26T21:41:28,895 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-26T21:41:28,898 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-26T21:41:28,901 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-26T21:41:28,903 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-26T21:41:28,906 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-26T21:41:28,908 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-26T21:41:28,912 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-10-26T21:41:28,915 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,916 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,919 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,922 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,925 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,927 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,930 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,933 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,936 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,938 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,941 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,944 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,947 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-10-26T21:41:28,950 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,951 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,954 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,956 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,959 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,961 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,964 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,966 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,969 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,972 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,974 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,977 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,980 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-10-26T21:41:28,983 running build_clib 2022-10-26T21:41:28,991 creating build/temp.linux-armv7l-cpython-39 2022-10-26T21:41:28,992 generating "divsufsort.h" for divsufsort library 2022-10-26T21:41:28,993 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-39/divsufsort.h 2022-10-26T21:41:28,995 generating "esl_config.h" for easel library 2022-10-26T21:41:29,094 checking whether can be included... yes 2022-10-26T21:41:29,223 checking whether can be included... yes 2022-10-26T21:41:29,341 checking whether can be included... yes 2022-10-26T21:41:29,429 checking whether can be included... yes 2022-10-26T21:41:29,512 checking whether can be included... yes 2022-10-26T21:41:29,593 checking whether can be included... yes 2022-10-26T21:41:29,677 checking whether can be included... yes 2022-10-26T21:41:29,768 checking whether can be included... yes 2022-10-26T21:41:29,860 checking whether can be included... yes 2022-10-26T21:41:29,944 checking whether can be included... yes 2022-10-26T21:41:30,055 checking whether can be included... yes 2022-10-26T21:41:30,206 checking whether can be included... yes 2022-10-26T21:41:30,354 checking whether can be included... yes 2022-10-26T21:41:30,407 checking whether function 'aligned_alloc' is available... no 2022-10-26T21:41:30,461 checking whether function 'erfc' is available... no 2022-10-26T21:41:30,660 checking whether function 'getpid' is available... yes 2022-10-26T21:41:30,852 checking whether function '_mm_malloc' is available... no 2022-10-26T21:41:31,081 checking whether function 'popen' is available... yes 2022-10-26T21:41:31,275 checking whether function 'posix_memalign' is available... yes 2022-10-26T21:41:31,476 checking whether function 'strcasecmp' is available... yes 2022-10-26T21:41:31,690 checking whether function 'strsep' is available... yes 2022-10-26T21:41:31,913 checking whether function 'sysconf' is available... yes 2022-10-26T21:41:32,109 checking whether function 'sysctl' is available... yes 2022-10-26T21:41:32,308 checking whether function 'times' is available... yes 2022-10-26T21:41:32,503 checking whether function 'fseeko' is available... yes 2022-10-26T21:41:32,506 generating "p7_config.h" for hmmer library 2022-10-26T21:41:32,589 checking whether can be included... yes 2022-10-26T21:41:32,674 checking whether can be included... yes 2022-10-26T21:41:32,759 checking whether can be included... yes 2022-10-26T21:41:32,876 checking whether can be included... yes 2022-10-26T21:41:32,972 checking whether can be included... yes 2022-10-26T21:41:33,080 checking whether can be included... yes 2022-10-26T21:41:33,204 checking whether can be included... yes 2022-10-26T21:41:33,320 checking whether can be included... yes 2022-10-26T21:41:33,516 checking whether function 'mkstemp' is available... yes 2022-10-26T21:41:33,717 checking whether function 'popen' is available... yes 2022-10-26T21:41:33,916 checking whether function 'putenv' is available... yes 2022-10-26T21:41:34,137 checking whether function 'strcasecmp' is available... yes 2022-10-26T21:41:34,332 checking whether function 'strsep' is available... yes 2022-10-26T21:41:34,526 checking whether function 'times' is available... yes 2022-10-26T21:41:34,724 checking whether function 'getpid' is available... yes 2022-10-26T21:41:34,947 checking whether function 'sysctl' is available... yes 2022-10-26T21:41:35,144 checking whether function 'sysconf' is available... yes 2022-10-26T21:41:35,340 checking whether function 'getcwd' is available... yes 2022-10-26T21:41:35,552 checking whether function 'chmod' is available... yes 2022-10-26T21:41:35,779 checking whether function 'stat' is available... yes 2022-10-26T21:41:35,990 checking whether function 'fstat' is available... yes 2022-10-26T21:41:36,043 checking whether function 'erfc' is available... no 2022-10-26T21:41:36,046 generating build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-10-26T21:41:36,055 generating build/temp.linux-armv7l-cpython-39/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-10-26T21:41:36,065 generating build/temp.linux-armv7l-cpython-39/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-10-26T21:41:36,097 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-10-26T21:41:36,098 creating build/temp.linux-armv7l-cpython-39/vendor 2022-10-26T21:41:36,098 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer 2022-10-26T21:41:36,099 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort 2022-10-26T21:41:36,101 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2022-10-26T21:41:39,918 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libdivsufsort.a build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2022-10-26T21:41:39,944 generating build/temp.linux-armv7l-cpython-39/libeasel.a from vendor/easel/esl_sq.c, vendor/easel/esl_heap.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_cpu.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_mpi.c, vendor/easel/esl_getopts.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_varint.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_avx.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_gev.c, vendor/easel/esl_neon.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_red_black.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_graph.c, vendor/easel/esl_arr2.c, vendor/easel/esl_msa.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_hmm.c, vendor/easel/esl_cluster.c, vendor/easel/esl_swat.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_ssi.c, vendor/easel/esl_arr3.c, vendor/easel/interface_gsl.c, vendor/easel/esl_sse.c, vendor/easel/esl_weibull.c, vendor/easel/esl_histogram.c, vendor/easel/esl_buffer.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_stack.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_alloc.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_json.c, vendor/easel/esl_paml.c, vendor/easel/esl_vmx.c, vendor/easel/esl_threads.c, vendor/easel/esl_gencode.c, vendor/easel/esl_composition.c, vendor/easel/esl_exponential.c, vendor/easel/esl_sqio.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_recorder.c, vendor/easel/esl_random.c, vendor/easel/interface_lapack.c, vendor/easel/esl_avx512.c, vendor/easel/esl_wuss.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_mem.c, vendor/easel/easel.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_rand64.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_regexp.c, vendor/easel/esl_normal.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_tree.c, vendor/easel/esl_gamma.c, vendor/easel/esl_msafile.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_distance.c, vendor/easel/esl_huffman.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_stats.c, build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2022-10-26T21:41:39,982 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-10-26T21:41:39,982 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-10-26T21:41:39,982 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-10-26T21:41:39,983 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-10-26T21:41:39,983 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-10-26T21:41:39,984 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-10-26T21:41:39,984 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-10-26T21:41:39,984 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-10-26T21:41:39,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o 2022-10-26T21:41:39,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o 2022-10-26T21:41:39,986 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o 2022-10-26T21:41:39,996 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o 2022-10-26T21:41:40,127 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-10-26T21:41:40,128 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o 2022-10-26T21:41:40,214 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-10-26T21:41:40,215 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-10-26T21:41:40,216 1636 | for (pos = 0; pos < sq->n; pos++) 2022-10-26T21:41:40,216 | ^ 2022-10-26T21:41:40,216 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-10-26T21:41:40,217 1645 | for (pos = 1; pos <= sq->n; pos++) 2022-10-26T21:41:40,217 | ^~ 2022-10-26T21:41:40,336 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-10-26T21:41:40,337 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:40,337 449 | if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-10-26T21:41:40,337 | ^~ 2022-10-26T21:41:40,360 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-10-26T21:41:40,361 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o 2022-10-26T21:41:40,769 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-10-26T21:41:40,770 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o 2022-10-26T21:41:41,007 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-10-26T21:41:41,007 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:41,008 253 | if (alphatype != dd->abc_r->type) 2022-10-26T21:41:41,008 | ^~ 2022-10-26T21:41:41,017 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-10-26T21:41:41,018 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:41,018 614 | if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-10-26T21:41:41,018 | ^ 2022-10-26T21:41:41,019 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:41,019 615 | n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-10-26T21:41:41,019 | ^ 2022-10-26T21:41:41,019 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:41,020 616 | n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-10-26T21:41:41,020 | ^ 2022-10-26T21:41:41,020 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:41,021 617 | n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-10-26T21:41:41,021 | ^ 2022-10-26T21:41:41,023 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:41,023 676 | if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-10-26T21:41:41,023 | ^~ 2022-10-26T21:41:41,024 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:41,024 682 | if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-10-26T21:41:41,024 | ^~ 2022-10-26T21:41:41,025 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:41,025 687 | if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-10-26T21:41:41,025 | ^~ 2022-10-26T21:41:41,026 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:41,026 692 | if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-10-26T21:41:41,026 | ^~ 2022-10-26T21:41:41,061 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-10-26T21:41:41,062 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-10-26T21:41:41,062 1129 | } 2022-10-26T21:41:41,062 | ^ 2022-10-26T21:41:41,068 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-10-26T21:41:41,069 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-10-26T21:41:41,069 1052 | } 2022-10-26T21:41:41,069 | ^ 2022-10-26T21:41:41,126 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-10-26T21:41:41,127 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o 2022-10-26T21:41:41,632 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-10-26T21:41:41,633 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o 2022-10-26T21:41:41,838 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-10-26T21:41:41,839 15 | static double stopwatch_getRealTime(void); 2022-10-26T21:41:41,839 | ^~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:41:41,945 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-10-26T21:41:41,946 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o 2022-10-26T21:41:42,030 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-10-26T21:41:42,031 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o 2022-10-26T21:41:42,411 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-10-26T21:41:42,412 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-26T21:41:42,413 474 | if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-10-26T21:41:42,413 | ~~~~^~~~~~~ 2022-10-26T21:41:42,503 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-10-26T21:41:42,504 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o 2022-10-26T21:41:42,680 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-10-26T21:41:42,681 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o 2022-10-26T21:41:42,993 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-10-26T21:41:42,994 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o 2022-10-26T21:41:43,100 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-10-26T21:41:43,100 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o 2022-10-26T21:41:43,384 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-10-26T21:41:43,385 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o 2022-10-26T21:41:43,407 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-10-26T21:41:43,407 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-26T21:41:43,407 722 | for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-10-26T21:41:43,408 | ^ 2022-10-26T21:41:43,408 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-10-26T21:41:43,409 645 | char *p; 2022-10-26T21:41:43,409 | ^ 2022-10-26T21:41:43,493 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-10-26T21:41:43,494 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o 2022-10-26T21:41:43,632 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-10-26T21:41:43,633 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o 2022-10-26T21:41:43,908 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-10-26T21:41:43,908 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-26T21:41:43,908 243 | if (opt_fx) *opt_fx = fx; 2022-10-26T21:41:43,909 | ~~~~~~~~^~~~ 2022-10-26T21:41:43,909 vendor/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-26T21:41:43,910 720 | m = 0.5 * (a+b); 2022-10-26T21:41:43,910 | ~~^~~ 2022-10-26T21:41:43,910 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-10-26T21:41:43,911 118 | double ax,bx,cx; 2022-10-26T21:41:43,911 | ^~ 2022-10-26T21:41:43,911 vendor/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-26T21:41:43,912 720 | m = 0.5 * (a+b); 2022-10-26T21:41:43,912 | ~~^~~ 2022-10-26T21:41:43,912 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-10-26T21:41:43,913 118 | double ax,bx,cx; 2022-10-26T21:41:43,913 | ^~ 2022-10-26T21:41:44,453 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-10-26T21:41:44,454 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o 2022-10-26T21:41:44,496 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-10-26T21:41:44,497 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o 2022-10-26T21:41:44,606 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-10-26T21:41:44,607 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o 2022-10-26T21:41:44,634 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-10-26T21:41:44,635 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o 2022-10-26T21:41:44,679 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-10-26T21:41:44,680 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o 2022-10-26T21:41:44,775 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-10-26T21:41:44,776 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o 2022-10-26T21:41:44,955 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-10-26T21:41:44,956 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:44,957 1308 | if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-10-26T21:41:44,957 | ^~ 2022-10-26T21:41:44,976 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-10-26T21:41:44,977 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o 2022-10-26T21:41:45,250 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-10-26T21:41:45,251 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o 2022-10-26T21:41:45,887 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-10-26T21:41:45,888 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o 2022-10-26T21:41:46,066 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-10-26T21:41:46,066 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o 2022-10-26T21:41:46,233 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-10-26T21:41:46,233 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:46,234 151 | for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-10-26T21:41:46,234 | ^ 2022-10-26T21:41:46,373 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-10-26T21:41:46,374 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o 2022-10-26T21:41:46,967 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-10-26T21:41:46,968 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o 2022-10-26T21:41:46,976 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-10-26T21:41:46,976 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o 2022-10-26T21:41:47,169 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-10-26T21:41:47,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o 2022-10-26T21:41:47,471 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-10-26T21:41:47,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o 2022-10-26T21:41:48,376 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-10-26T21:41:48,377 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o 2022-10-26T21:41:48,449 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-10-26T21:41:48,450 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o 2022-10-26T21:41:48,580 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-10-26T21:41:48,580 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o 2022-10-26T21:41:48,581 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-10-26T21:41:48,581 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,581 541 | if (rank > h->n) 2022-10-26T21:41:48,582 | ^ 2022-10-26T21:41:48,644 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-10-26T21:41:48,645 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,645 261 | if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-10-26T21:41:48,645 | ^~ 2022-10-26T21:41:48,655 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-10-26T21:41:48,656 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,656 728 | if ((n+1) > ns->flen) ns->flen = n+1; 2022-10-26T21:41:48,656 | ^ 2022-10-26T21:41:48,660 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-10-26T21:41:48,661 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,661 862 | if (n > ns->plen) ns->plen = n; 2022-10-26T21:41:48,661 | ^ 2022-10-26T21:41:48,663 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,664 893 | for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-10-26T21:41:48,664 | ^ 2022-10-26T21:41:48,664 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-10-26T21:41:48,665 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,665 941 | if (n > ns->slen) ns->slen = n; 2022-10-26T21:41:48,665 | ^ 2022-10-26T21:41:48,667 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,668 957 | for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-10-26T21:41:48,668 | ^ 2022-10-26T21:41:48,673 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-10-26T21:41:48,674 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,674 1149 | for (i = 0; i < ns->nprimary; i++) 2022-10-26T21:41:48,675 | ^ 2022-10-26T21:41:48,676 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,676 1167 | for (i = 0; i < ns->nprimary; i++) 2022-10-26T21:41:48,677 | ^ 2022-10-26T21:41:48,678 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,678 1187 | for (i = 0; i < ns->nsecondary; i++) 2022-10-26T21:41:48,678 | ^ 2022-10-26T21:41:48,680 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,680 1204 | for (i = 0; i < ns->nsecondary; i++) 2022-10-26T21:41:48,680 | ^ 2022-10-26T21:41:48,684 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-10-26T21:41:48,684 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,685 1253 | for (i = 0; i < ns->nprimary; i++) 2022-10-26T21:41:48,685 | ^ 2022-10-26T21:41:48,686 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,686 1259 | for (i = 0; i < ns->nsecondary; i++) 2022-10-26T21:41:48,687 | ^ 2022-10-26T21:41:48,691 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-10-26T21:41:48,692 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,692 1351 | for (i = 0; i < ns->nprimary; i++) { 2022-10-26T21:41:48,693 | ^ 2022-10-26T21:41:48,694 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,694 1370 | for (i = 0; i < ns->nsecondary; i++) 2022-10-26T21:41:48,695 | ^ 2022-10-26T21:41:48,695 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,696 1376 | for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-10-26T21:41:48,696 | ^ 2022-10-26T21:41:48,697 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,697 1377 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-10-26T21:41:48,697 | ^ 2022-10-26T21:41:48,698 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:41:48,698 1378 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-10-26T21:41:48,698 | ^ 2022-10-26T21:41:48,846 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-10-26T21:41:48,847 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o 2022-10-26T21:41:49,652 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-10-26T21:41:49,653 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o 2022-10-26T21:41:49,874 In file included from vendor/easel/esl_msafile2.c:26: 2022-10-26T21:41:49,874 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-10-26T21:41:49,875 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:49,875 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-26T21:41:49,875 | ^ 2022-10-26T21:41:49,876 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-26T21:41:49,876 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-10-26T21:41:49,876 | ^~~~~~~ 2022-10-26T21:41:49,876 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-26T21:41:49,877 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-26T21:41:49,877 | ^~~ 2022-10-26T21:41:49,877 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-26T21:41:49,877 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-10-26T21:41:49,877 | ^~~~~~~ 2022-10-26T21:41:49,878 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:49,878 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-26T21:41:49,878 | ^ 2022-10-26T21:41:49,878 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-26T21:41:49,879 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-10-26T21:41:49,879 | ^~~~~~~ 2022-10-26T21:41:49,879 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-26T21:41:49,880 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-26T21:41:49,880 | ^~~ 2022-10-26T21:41:49,880 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-10-26T21:41:49,881 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-10-26T21:41:49,881 | ^~~~~~~ 2022-10-26T21:41:49,984 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-10-26T21:41:49,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o 2022-10-26T21:41:50,551 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-10-26T21:41:50,552 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o 2022-10-26T21:41:50,610 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-10-26T21:41:50,610 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o 2022-10-26T21:41:50,843 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-10-26T21:41:50,844 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o 2022-10-26T21:41:50,951 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-10-26T21:41:50,952 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o 2022-10-26T21:41:51,058 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-10-26T21:41:51,059 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o 2022-10-26T21:41:51,716 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-10-26T21:41:51,717 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o 2022-10-26T21:41:52,360 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-10-26T21:41:52,361 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o 2022-10-26T21:41:52,636 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-10-26T21:41:52,637 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o 2022-10-26T21:41:52,647 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-10-26T21:41:52,648 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o 2022-10-26T21:41:52,849 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-10-26T21:41:52,850 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o 2022-10-26T21:41:52,973 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-10-26T21:41:52,974 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o 2022-10-26T21:41:53,088 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-10-26T21:41:53,089 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o 2022-10-26T21:41:53,167 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-10-26T21:41:53,168 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o 2022-10-26T21:41:53,181 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-10-26T21:41:53,182 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o 2022-10-26T21:41:53,433 In file included from vendor/easel/esl_hmm.c:9: 2022-10-26T21:41:53,433 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-10-26T21:41:53,433 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:53,434 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-26T21:41:53,434 | ^ 2022-10-26T21:41:53,434 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-10-26T21:41:53,434 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-10-26T21:41:53,435 | ^~~~~~~ 2022-10-26T21:41:53,435 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-26T21:41:53,435 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-26T21:41:53,436 | ^~~ 2022-10-26T21:41:53,436 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-10-26T21:41:53,436 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-10-26T21:41:53,436 | ^~~~~~~ 2022-10-26T21:41:53,750 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-10-26T21:41:53,751 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o 2022-10-26T21:41:53,969 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-10-26T21:41:53,969 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-10-26T21:41:53,970 652 | for (i = 0; i < a; i++) 2022-10-26T21:41:53,970 | ^ 2022-10-26T21:41:54,324 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-10-26T21:41:54,325 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o 2022-10-26T21:41:54,405 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-10-26T21:41:54,406 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o 2022-10-26T21:41:54,692 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-10-26T21:41:54,693 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o 2022-10-26T21:41:55,346 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-10-26T21:41:55,348 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o 2022-10-26T21:41:55,356 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-10-26T21:41:55,356 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o 2022-10-26T21:41:55,442 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-10-26T21:41:55,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o 2022-10-26T21:41:55,611 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-10-26T21:41:55,612 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o 2022-10-26T21:41:55,929 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-10-26T21:41:55,929 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o 2022-10-26T21:41:56,128 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-10-26T21:41:56,129 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o 2022-10-26T21:41:56,203 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-10-26T21:41:56,204 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-26T21:41:56,204 136 | return status; 2022-10-26T21:41:56,204 | ^~~~~~ 2022-10-26T21:41:56,226 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-10-26T21:41:56,227 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o 2022-10-26T21:41:56,480 generating build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o from vendor/easel/easel.c 2022-10-26T21:41:56,481 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o 2022-10-26T21:41:56,801 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-10-26T21:41:56,802 vendor/easel/easel.c:1807:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-26T21:41:56,803 1807 | nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-10-26T21:41:56,803 | ^~~~~~~~~~~~~~~~ 2022-10-26T21:41:56,846 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-10-26T21:41:56,847 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o 2022-10-26T21:41:56,926 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-10-26T21:41:56,927 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o 2022-10-26T21:41:56,987 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-10-26T21:41:56,987 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o 2022-10-26T21:41:57,888 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-10-26T21:41:57,889 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o 2022-10-26T21:41:58,240 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-10-26T21:41:58,241 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o 2022-10-26T21:41:58,254 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-10-26T21:41:58,255 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,255 216 | if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-10-26T21:41:58,256 | ^~ 2022-10-26T21:41:58,256 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,256 226 | if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-10-26T21:41:58,257 | ^~ 2022-10-26T21:41:58,257 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,257 233 | if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-10-26T21:41:58,258 | ^~ 2022-10-26T21:41:58,269 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-10-26T21:41:58,270 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,270 758 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-26T21:41:58,270 | ^~ 2022-10-26T21:41:58,271 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-10-26T21:41:58,272 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,272 809 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-26T21:41:58,272 | ^~ 2022-10-26T21:41:58,273 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-10-26T21:41:58,273 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,273 860 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-26T21:41:58,274 | ^~ 2022-10-26T21:41:58,276 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-10-26T21:41:58,277 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,277 1036 | if (status != eslOK || nres != W) { 2022-10-26T21:41:58,277 | ^~ 2022-10-26T21:41:58,278 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,278 1059 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-26T21:41:58,279 | ^~ 2022-10-26T21:41:58,289 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-10-26T21:41:58,289 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,290 1421 | if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-10-26T21:41:58,290 | ^ 2022-10-26T21:41:58,293 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,294 1458 | if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-10-26T21:41:58,294 | ^~ 2022-10-26T21:41:58,294 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-10-26T21:41:58,295 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,295 1513 | if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-10-26T21:41:58,296 | ^ 2022-10-26T21:41:58,296 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,297 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-10-26T21:41:58,297 | ^~ 2022-10-26T21:41:58,297 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,297 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-10-26T21:41:58,298 | ^ 2022-10-26T21:41:58,298 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,299 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-10-26T21:41:58,299 | ^ 2022-10-26T21:41:58,299 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,300 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2022-10-26T21:41:58,300 | ^ 2022-10-26T21:41:58,300 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,301 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2022-10-26T21:41:58,301 | ^ 2022-10-26T21:41:58,301 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,301 1526 | for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-10-26T21:41:58,302 | ^ 2022-10-26T21:41:58,302 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,302 1527 | if (inx < volume->end_seq) break; 2022-10-26T21:41:58,303 | ^ 2022-10-26T21:41:58,310 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,310 1532 | if (cnt >= ncbi->volumes) return eslFAIL; 2022-10-26T21:41:58,311 | ^~ 2022-10-26T21:41:58,311 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,311 1539 | if (ncbi->index_start == -1 || inx > end) { 2022-10-26T21:41:58,311 | ^~ 2022-10-26T21:41:58,311 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,312 1539 | if (ncbi->index_start == -1 || inx > end) { 2022-10-26T21:41:58,312 | ^ 2022-10-26T21:41:58,312 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,313 1564 | if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-10-26T21:41:58,313 | ^~ 2022-10-26T21:41:58,313 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,313 1572 | if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-10-26T21:41:58,314 | ^~ 2022-10-26T21:41:58,314 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,314 1581 | if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-10-26T21:41:58,314 | ^~ 2022-10-26T21:41:58,314 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-10-26T21:41:58,315 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,315 1623 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-26T21:41:58,315 | ^~ 2022-10-26T21:41:58,315 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,315 1633 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-26T21:41:58,316 | ^~ 2022-10-26T21:41:58,316 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,316 1641 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-26T21:41:58,316 | ^~ 2022-10-26T21:41:58,317 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-10-26T21:41:58,317 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,317 1690 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-26T21:41:58,317 | ^~ 2022-10-26T21:41:58,330 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,330 1701 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-26T21:41:58,331 | ^~ 2022-10-26T21:41:58,331 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,331 1754 | if (ncbi->seq_apos - sq->doff < size) { 2022-10-26T21:41:58,331 | ^ 2022-10-26T21:41:58,331 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-10-26T21:41:58,331 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,332 1831 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-26T21:41:58,332 | ^~ 2022-10-26T21:41:58,332 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,332 1856 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-10-26T21:41:58,332 | ^~ 2022-10-26T21:41:58,335 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-10-26T21:41:58,336 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,336 2005 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-10-26T21:41:58,337 | ^~ 2022-10-26T21:41:58,340 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,341 2047 | if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-10-26T21:41:58,341 | ^~ 2022-10-26T21:41:58,346 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-10-26T21:41:58,347 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,348 2178 | for (x = 0; x < strlen(ncbisym); ++x) { 2022-10-26T21:41:58,348 | ^ 2022-10-26T21:41:58,348 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,349 2179 | for (y = 0; y < strlen(abc->sym); ++y) { 2022-10-26T21:41:58,349 | ^ 2022-10-26T21:41:58,350 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,350 2187 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-10-26T21:41:58,350 | ^~ 2022-10-26T21:41:58,352 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-10-26T21:41:58,353 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,353 2226 | for (x = 0; x < strlen(ncbisym); ++x) { 2022-10-26T21:41:58,353 | ^ 2022-10-26T21:41:58,354 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,354 2227 | for (y = 0; y < strlen(abc->sym); ++y) { 2022-10-26T21:41:58,354 | ^ 2022-10-26T21:41:58,355 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:41:58,356 2235 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-10-26T21:41:58,356 | ^~ 2022-10-26T21:41:58,359 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-10-26T21:41:58,361 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:58,361 2463 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-10-26T21:41:58,361 | ^~ 2022-10-26T21:41:58,797 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-10-26T21:41:58,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o 2022-10-26T21:41:58,886 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-10-26T21:41:58,887 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o 2022-10-26T21:41:58,918 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-10-26T21:41:58,919 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o 2022-10-26T21:41:59,098 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-10-26T21:41:59,099 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:41:59,099 107 | if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-10-26T21:41:59,099 | ^~ 2022-10-26T21:42:00,610 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-10-26T21:42:00,611 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o 2022-10-26T21:42:00,624 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-10-26T21:42:00,625 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o 2022-10-26T21:42:00,816 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-10-26T21:42:00,817 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-10-26T21:42:00,817 94 | for (h = 0; h < kh->hashsize; h++) 2022-10-26T21:42:00,817 | ^ 2022-10-26T21:42:00,817 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-10-26T21:42:00,818 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:00,818 171 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-10-26T21:42:00,818 | ^ 2022-10-26T21:42:00,818 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-10-26T21:42:00,819 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-10-26T21:42:00,819 215 | for (h = 0; h < kh->hashsize; h++) 2022-10-26T21:42:00,820 | ^ 2022-10-26T21:42:00,821 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-10-26T21:42:00,821 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:00,822 310 | if (kh->nkeys > 3*kh->hashsize) 2022-10-26T21:42:00,822 | ^ 2022-10-26T21:42:00,824 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-10-26T21:42:00,824 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:00,824 401 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-10-26T21:42:00,825 | ^ 2022-10-26T21:42:00,826 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-10-26T21:42:00,827 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:00,827 491 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-10-26T21:42:00,827 | ^ 2022-10-26T21:42:01,347 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-10-26T21:42:01,348 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o 2022-10-26T21:42:01,797 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-10-26T21:42:01,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o 2022-10-26T21:42:02,474 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-10-26T21:42:02,475 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o 2022-10-26T21:42:02,614 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-10-26T21:42:02,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o 2022-10-26T21:42:02,811 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-10-26T21:42:02,811 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o 2022-10-26T21:42:03,110 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-10-26T21:42:03,111 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o 2022-10-26T21:42:03,458 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-10-26T21:42:03,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o 2022-10-26T21:42:03,599 generating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2022-10-26T21:42:03,599 creating build/temp.linux-armv7l-cpython-39/build 2022-10-26T21:42:03,600 creating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39 2022-10-26T21:42:03,601 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2022-10-26T21:42:03,696 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-10-26T21:42:03,697 vendor/easel/esl_regexp.c:804:18: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-10-26T21:42:03,698 804 | *flagp |= flags&HASWIDTH; 2022-10-26T21:42:03,698 | ^ 2022-10-26T21:42:03,830 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-10-26T21:42:03,830 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o 2022-10-26T21:42:03,884 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-10-26T21:42:03,885 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:42:03,885 1669 | if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-10-26T21:42:03,886 | ^~ 2022-10-26T21:42:04,740 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-10-26T21:42:04,740 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o 2022-10-26T21:42:06,319 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libeasel.a build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2022-10-26T21:42:06,512 generating build/temp.linux-armv7l-cpython-39/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-39/p7_hmmfile.c 2022-10-26T21:42:06,516 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-10-26T21:42:06,516 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-10-26T21:42:06,517 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2022-10-26T21:42:06,517 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-10-26T21:42:06,518 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-10-26T21:42:06,518 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o 2022-10-26T21:42:06,519 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o 2022-10-26T21:42:06,523 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o 2022-10-26T21:42:06,531 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o 2022-10-26T21:42:06,731 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-10-26T21:42:06,731 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:06,731 829 | #error "No vector implementation enabled" 2022-10-26T21:42:06,731 | ^~~~~ 2022-10-26T21:42:06,733 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,733 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:06,733 | ^~~~~~ 2022-10-26T21:42:06,734 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,734 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:06,734 | ^~~~~~ 2022-10-26T21:42:06,735 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,735 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:06,735 | ^~~~~~ 2022-10-26T21:42:06,736 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,736 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:06,736 | ^~~~~~ 2022-10-26T21:42:06,737 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,738 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:06,738 | ^~~~~~~~~~~ 2022-10-26T21:42:06,739 | P7_PROFILE 2022-10-26T21:42:06,740 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,741 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:06,741 | ^~~~~~~~~~~ 2022-10-26T21:42:06,742 | P7_PROFILE 2022-10-26T21:42:06,742 In file included from vendor/hmmer/src/build.c:32: 2022-10-26T21:42:06,742 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:06,742 829 | #error "No vector implementation enabled" 2022-10-26T21:42:06,743 | ^~~~~ 2022-10-26T21:42:06,743 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,743 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:06,744 | ^~~~~~~~~~~ 2022-10-26T21:42:06,744 | P7_PROFILE 2022-10-26T21:42:06,744 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,745 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:06,745 | ^~~~~~ 2022-10-26T21:42:06,745 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,746 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:06,746 | ^~~~~~ 2022-10-26T21:42:06,747 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,747 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:06,747 | ^~~~~~ 2022-10-26T21:42:06,747 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,747 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:06,748 | ^~~~~~ 2022-10-26T21:42:06,748 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,749 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:06,749 | ^~~~~~~~~~~ 2022-10-26T21:42:06,749 | P7_PROFILE 2022-10-26T21:42:06,750 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,750 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:06,751 | ^~~~~~~~~~~ 2022-10-26T21:42:06,751 | P7_PROFILE 2022-10-26T21:42:06,752 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,752 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:06,752 | ^~~~~~~~~~~ 2022-10-26T21:42:06,752 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,753 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:06,753 | ^~~~~~~~~~~ 2022-10-26T21:42:06,754 | P7_PROFILE 2022-10-26T21:42:06,754 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,755 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:06,755 | ^~~~~~~~~~~ 2022-10-26T21:42:06,755 | P7_PROFILE 2022-10-26T21:42:06,755 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,755 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:06,756 | ^~~~~~~~~~~ 2022-10-26T21:42:06,756 | P7_PROFILE 2022-10-26T21:42:06,757 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,757 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:06,757 | ^~~~~~~~~~~ 2022-10-26T21:42:06,758 | P7_PROFILE 2022-10-26T21:42:06,758 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,758 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:06,758 | ^~~~~~~~~~~ 2022-10-26T21:42:06,758 | P7_PROFILE 2022-10-26T21:42:06,759 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,760 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:06,760 | ^~~~~~~~~~~ 2022-10-26T21:42:06,761 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,761 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,761 | ^~~~~~~~~~~ 2022-10-26T21:42:06,761 | P7_PROFILE 2022-10-26T21:42:06,762 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,763 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,763 | ^~~~~~ 2022-10-26T21:42:06,763 | P7_GMX 2022-10-26T21:42:06,763 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,764 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:06,764 | ^~~~~~~~~~~ 2022-10-26T21:42:06,764 | P7_PROFILE 2022-10-26T21:42:06,770 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,771 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:06,771 | ^~~~~~~~~~~ 2022-10-26T21:42:06,772 | P7_PROFILE 2022-10-26T21:42:06,772 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,772 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,772 | ^~~~~~ 2022-10-26T21:42:06,772 | P7_GMX 2022-10-26T21:42:06,773 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,773 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,774 | ^~~~~~~~~~~ 2022-10-26T21:42:06,774 | P7_PROFILE 2022-10-26T21:42:06,775 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,775 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,775 | ^~~~~~ 2022-10-26T21:42:06,776 | P7_GMX 2022-10-26T21:42:06,776 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,776 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,777 | ^~~~~~ 2022-10-26T21:42:06,777 | P7_GMX 2022-10-26T21:42:06,778 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,778 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,779 | ^~~~~~ 2022-10-26T21:42:06,779 | P7_GMX 2022-10-26T21:42:06,779 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,780 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,780 | ^~~~~~ 2022-10-26T21:42:06,791 | P7_GMX 2022-10-26T21:42:06,791 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-10-26T21:42:06,791 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:06,791 829 | #error "No vector implementation enabled" 2022-10-26T21:42:06,792 | ^~~~~ 2022-10-26T21:42:06,792 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,793 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,793 | ^~~~~~ 2022-10-26T21:42:06,794 | P7_GMX 2022-10-26T21:42:06,794 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,795 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:06,795 | ^~~~~~ 2022-10-26T21:42:06,796 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,796 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:06,797 | ^~~~~~ 2022-10-26T21:42:06,797 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,797 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:06,797 | ^~~~~~ 2022-10-26T21:42:06,797 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,798 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:06,798 | ^~~~~~~~~~~ 2022-10-26T21:42:06,798 | P7_PROFILE 2022-10-26T21:42:06,798 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,798 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:06,799 | ^~~~~~ 2022-10-26T21:42:06,799 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,809 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,815 | ^~~~~~ 2022-10-26T21:42:06,815 | P7_GMX 2022-10-26T21:42:06,816 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,816 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:06,816 | ^~~~~~~~~~~ 2022-10-26T21:42:06,816 | P7_PROFILE 2022-10-26T21:42:06,817 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,817 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:06,817 | ^~~~~~~~~~~ 2022-10-26T21:42:06,818 | P7_PROFILE 2022-10-26T21:42:06,818 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,818 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:06,819 | ^~~~~~~~~~~ 2022-10-26T21:42:06,819 | P7_PROFILE 2022-10-26T21:42:06,819 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,819 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:06,836 | ^~~~~~~~~~~ 2022-10-26T21:42:06,836 | P7_PROFILE 2022-10-26T21:42:06,837 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,837 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:06,837 | ^~~~~~~~~~~ 2022-10-26T21:42:06,837 | P7_PROFILE 2022-10-26T21:42:06,838 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,838 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:06,838 | ^~~~~~~~~~~ 2022-10-26T21:42:06,839 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,839 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:06,839 | ^~~~~~~~~~~ 2022-10-26T21:42:06,839 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,839 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:06,840 | ^~~~~~~~~~~ 2022-10-26T21:42:06,840 | P7_PROFILE 2022-10-26T21:42:06,840 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,840 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:06,841 | ^~~~~~~~~~~ 2022-10-26T21:42:06,841 | P7_PROFILE 2022-10-26T21:42:06,841 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,841 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:06,842 | ^~~~~~~~~~~ 2022-10-26T21:42:06,842 | P7_PROFILE 2022-10-26T21:42:06,842 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,842 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:06,843 | ^~~~~~~~~~~ 2022-10-26T21:42:06,843 | P7_PROFILE 2022-10-26T21:42:06,843 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,843 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:06,844 | ^~~~~~~~~~~ 2022-10-26T21:42:06,844 | P7_PROFILE 2022-10-26T21:42:06,845 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,845 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:06,845 | ^~~~~~~~~~~ 2022-10-26T21:42:06,846 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,846 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:06,846 | ^~~~~~~~~~~ 2022-10-26T21:42:06,847 | P7_PROFILE 2022-10-26T21:42:06,847 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,847 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:06,847 | ^~~~~~~~~~~ 2022-10-26T21:42:06,848 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,848 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:06,849 | ^~~~~~~~~~~ 2022-10-26T21:42:06,849 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,849 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:06,849 | ^~~~~~~~~~~ 2022-10-26T21:42:06,850 | P7_PROFILE 2022-10-26T21:42:06,850 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,850 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:06,850 | ^~~~~~~~~~~ 2022-10-26T21:42:06,851 | P7_PROFILE 2022-10-26T21:42:06,851 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,852 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:06,852 | ^~~~~~~~~~~ 2022-10-26T21:42:06,852 | P7_PROFILE 2022-10-26T21:42:06,853 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,853 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:06,853 | ^~~~~~~~~~~ 2022-10-26T21:42:06,853 | P7_PROFILE 2022-10-26T21:42:06,854 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,854 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:06,854 | ^~~~~~~~~~~ 2022-10-26T21:42:06,855 | P7_PROFILE 2022-10-26T21:42:06,855 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,856 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,856 | ^~~~~~~~~~~ 2022-10-26T21:42:06,856 | P7_PROFILE 2022-10-26T21:42:06,856 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,856 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:06,857 | ^~~~~~~~~~~ 2022-10-26T21:42:06,857 | P7_PROFILE 2022-10-26T21:42:06,857 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,858 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,858 | ^~~~~~ 2022-10-26T21:42:06,858 | P7_GMX 2022-10-26T21:42:06,859 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,859 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,859 | ^~~~~~ 2022-10-26T21:42:06,859 | P7_GMX 2022-10-26T21:42:06,859 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,860 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,860 | ^~~~~~ 2022-10-26T21:42:06,861 | P7_GMX 2022-10-26T21:42:06,861 In file included from vendor/hmmer/src/errors.c:19: 2022-10-26T21:42:06,861 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:06,862 829 | #error "No vector implementation enabled" 2022-10-26T21:42:06,862 | ^~~~~ 2022-10-26T21:42:06,863 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,864 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,864 | ^~~~~~ 2022-10-26T21:42:06,865 | P7_GMX 2022-10-26T21:42:06,865 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,865 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:06,866 | ^~~~~~ 2022-10-26T21:42:06,866 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,866 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:06,866 | ^~~~~~ 2022-10-26T21:42:06,866 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,866 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:06,867 | ^~~~~~ 2022-10-26T21:42:06,867 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:06,867 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:06,867 | ^~~~~~ 2022-10-26T21:42:06,867 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,867 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:06,868 | ^~~~~~~~~~~ 2022-10-26T21:42:06,868 | P7_PROFILE 2022-10-26T21:42:06,869 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,869 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:06,869 | ^~~~~~~~~~~ 2022-10-26T21:42:06,869 | P7_PROFILE 2022-10-26T21:42:06,870 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-10-26T21:42:06,870 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,870 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:06,870 | ^~~~~~~~~~~ 2022-10-26T21:42:06,870 | P7_PROFILE 2022-10-26T21:42:06,871 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o 2022-10-26T21:42:06,871 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,872 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:06,872 | ^~~~~~~~~~~ 2022-10-26T21:42:06,872 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,873 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:06,873 | ^~~~~~~~~~~ 2022-10-26T21:42:06,873 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,873 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:06,874 | ^~~~~~~~~~~ 2022-10-26T21:42:06,874 | P7_PROFILE 2022-10-26T21:42:06,874 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,874 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:06,874 | ^~~~~~~~~~~ 2022-10-26T21:42:06,874 | P7_PROFILE 2022-10-26T21:42:06,875 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,875 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:06,876 | ^~~~~~~~~~~ 2022-10-26T21:42:06,876 | P7_PROFILE 2022-10-26T21:42:06,876 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,876 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:06,877 | ^~~~~~~~~~~ 2022-10-26T21:42:06,877 | P7_PROFILE 2022-10-26T21:42:06,877 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,877 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:06,877 | ^~~~~~~~~~~ 2022-10-26T21:42:06,877 | P7_PROFILE 2022-10-26T21:42:06,878 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-10-26T21:42:06,885 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o 2022-10-26T21:42:06,886 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,886 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:06,886 | ^~~~~~~~~~~ 2022-10-26T21:42:06,886 | P7_PROFILE 2022-10-26T21:42:06,887 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,887 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:06,887 | ^~~~~~~~~~~ 2022-10-26T21:42:06,887 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,888 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:06,888 | ^~~~~~~~~~~ 2022-10-26T21:42:06,888 | P7_PROFILE 2022-10-26T21:42:06,888 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,888 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:06,889 | ^~~~~~~~~~~ 2022-10-26T21:42:06,889 | P7_PROFILE 2022-10-26T21:42:06,890 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,890 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:06,890 | ^~~~~~~~~~~ 2022-10-26T21:42:06,891 | P7_PROFILE 2022-10-26T21:42:06,891 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,891 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,891 | ^~~~~~~~~~~ 2022-10-26T21:42:06,892 | P7_PROFILE 2022-10-26T21:42:06,892 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,892 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,892 | ^~~~~~ 2022-10-26T21:42:06,892 | P7_GMX 2022-10-26T21:42:06,893 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,893 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,893 | ^~~~~~ 2022-10-26T21:42:06,893 | P7_GMX 2022-10-26T21:42:06,894 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,895 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,895 | ^~~~~~ 2022-10-26T21:42:06,896 | P7_GMX 2022-10-26T21:42:06,896 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:06,896 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:06,897 | ^~~~~~ 2022-10-26T21:42:06,897 | P7_GMX 2022-10-26T21:42:06,897 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,897 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:06,897 | ^~~~~~~~~~~ 2022-10-26T21:42:06,898 | P7_PROFILE 2022-10-26T21:42:06,898 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,898 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:06,898 | ^~~~~~~~~~~ 2022-10-26T21:42:06,898 | P7_PROFILE 2022-10-26T21:42:06,899 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,899 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:06,899 | ^~~~~~~~~~~ 2022-10-26T21:42:06,899 | P7_PROFILE 2022-10-26T21:42:06,900 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,900 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:06,900 | ^~~~~~~~~~~ 2022-10-26T21:42:06,900 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:06,901 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:06,901 | ^~~~~~~~~~~ 2022-10-26T21:42:06,901 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-10-26T21:42:06,902 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o 2022-10-26T21:42:06,902 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,903 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:06,903 | ^~~~~~~~~~~ 2022-10-26T21:42:06,903 | P7_PROFILE 2022-10-26T21:42:06,903 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,904 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:06,904 | ^~~~~~~~~~~ 2022-10-26T21:42:06,904 | P7_PROFILE 2022-10-26T21:42:06,904 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:06,904 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:06,905 | ^~~~~~~~~~~ 2022-10-26T21:42:06,905 | P7_PROFILE 2022-10-26T21:42:06,905 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-10-26T21:42:06,905 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o 2022-10-26T21:42:06,986 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-10-26T21:42:06,987 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o 2022-10-26T21:42:07,007 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-10-26T21:42:07,008 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o 2022-10-26T21:42:07,058 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-10-26T21:42:07,059 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:07,059 829 | #error "No vector implementation enabled" 2022-10-26T21:42:07,059 | ^~~~~ 2022-10-26T21:42:07,060 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,060 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:07,061 | ^~~~~~ 2022-10-26T21:42:07,061 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,061 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:07,061 | ^~~~~~ 2022-10-26T21:42:07,061 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,062 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:07,062 | ^~~~~~ 2022-10-26T21:42:07,063 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,063 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:07,063 | ^~~~~~ 2022-10-26T21:42:07,064 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,065 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:07,065 | ^~~~~~~~~~~ 2022-10-26T21:42:07,066 | P7_PROFILE 2022-10-26T21:42:07,067 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,067 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:07,068 | ^~~~~~~~~~~ 2022-10-26T21:42:07,068 | P7_PROFILE 2022-10-26T21:42:07,070 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,070 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:07,071 | ^~~~~~~~~~~ 2022-10-26T21:42:07,071 | P7_PROFILE 2022-10-26T21:42:07,072 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,072 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:07,072 | ^~~~~~~~~~~ 2022-10-26T21:42:07,073 | P7_PROFILE 2022-10-26T21:42:07,074 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,074 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:07,075 | ^~~~~~~~~~~ 2022-10-26T21:42:07,078 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,078 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:07,079 | ^~~~~~~~~~~ 2022-10-26T21:42:07,079 | P7_PROFILE 2022-10-26T21:42:07,081 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,082 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:07,082 | ^~~~~~~~~~~ 2022-10-26T21:42:07,082 | P7_PROFILE 2022-10-26T21:42:07,084 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,085 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,085 | ^~~~~~~~~~~ 2022-10-26T21:42:07,085 | P7_PROFILE 2022-10-26T21:42:07,087 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,088 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,088 | ^~~~~~ 2022-10-26T21:42:07,088 | P7_GMX 2022-10-26T21:42:07,089 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,090 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,090 | ^~~~~~ 2022-10-26T21:42:07,090 | P7_GMX 2022-10-26T21:42:07,093 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,093 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,093 | ^~~~~~ 2022-10-26T21:42:07,094 | P7_GMX 2022-10-26T21:42:07,095 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,095 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,095 | ^~~~~~ 2022-10-26T21:42:07,096 | P7_GMX 2022-10-26T21:42:07,096 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-10-26T21:42:07,097 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o 2022-10-26T21:42:07,099 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,100 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:07,100 | ^~~~~~~~~~~ 2022-10-26T21:42:07,100 | P7_PROFILE 2022-10-26T21:42:07,105 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,105 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:07,105 | ^~~~~~~~~~~ 2022-10-26T21:42:07,105 | P7_PROFILE 2022-10-26T21:42:07,105 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,106 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:07,106 | ^~~~~~~~~~~ 2022-10-26T21:42:07,106 | P7_PROFILE 2022-10-26T21:42:07,106 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,107 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:07,107 | ^~~~~~~~~~~ 2022-10-26T21:42:07,107 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,107 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:07,108 | ^~~~~~~~~~~ 2022-10-26T21:42:07,109 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,109 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:07,110 | ^~~~~~~~~~~ 2022-10-26T21:42:07,110 | P7_PROFILE 2022-10-26T21:42:07,111 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,112 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:07,112 | ^~~~~~~~~~~ 2022-10-26T21:42:07,112 | P7_PROFILE 2022-10-26T21:42:07,118 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,118 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:07,119 | ^~~~~~~~~~~ 2022-10-26T21:42:07,119 | P7_PROFILE 2022-10-26T21:42:07,130 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-10-26T21:42:07,130 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o 2022-10-26T21:42:07,140 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-10-26T21:42:07,140 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o 2022-10-26T21:42:07,202 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-10-26T21:42:07,202 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:07,202 829 | #error "No vector implementation enabled" 2022-10-26T21:42:07,203 | ^~~~~ 2022-10-26T21:42:07,203 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,204 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:07,204 | ^~~~~~ 2022-10-26T21:42:07,204 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,204 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:07,205 | ^~~~~~ 2022-10-26T21:42:07,205 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,205 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:07,206 | ^~~~~~ 2022-10-26T21:42:07,206 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,207 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:07,207 | ^~~~~~ 2022-10-26T21:42:07,208 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,209 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:07,209 | ^~~~~~~~~~~ 2022-10-26T21:42:07,209 | P7_PROFILE 2022-10-26T21:42:07,211 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,211 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:07,212 | ^~~~~~~~~~~ 2022-10-26T21:42:07,212 | P7_PROFILE 2022-10-26T21:42:07,213 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,214 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:07,214 | ^~~~~~~~~~~ 2022-10-26T21:42:07,214 | P7_PROFILE 2022-10-26T21:42:07,216 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,216 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:07,216 | ^~~~~~~~~~~ 2022-10-26T21:42:07,216 | P7_PROFILE 2022-10-26T21:42:07,217 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,218 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:07,218 | ^~~~~~~~~~~ 2022-10-26T21:42:07,221 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,221 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:07,221 | ^~~~~~~~~~~ 2022-10-26T21:42:07,222 | P7_PROFILE 2022-10-26T21:42:07,223 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,223 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:07,223 | ^~~~~~~~~~~ 2022-10-26T21:42:07,224 | P7_PROFILE 2022-10-26T21:42:07,226 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,226 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,226 | ^~~~~~~~~~~ 2022-10-26T21:42:07,226 | P7_PROFILE 2022-10-26T21:42:07,228 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,228 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,229 | ^~~~~~ 2022-10-26T21:42:07,229 | P7_GMX 2022-10-26T21:42:07,232 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,233 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,233 | ^~~~~~ 2022-10-26T21:42:07,233 | P7_GMX 2022-10-26T21:42:07,233 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,234 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,234 | ^~~~~~ 2022-10-26T21:42:07,235 | P7_GMX 2022-10-26T21:42:07,239 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,240 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,240 | ^~~~~~ 2022-10-26T21:42:07,240 | P7_GMX 2022-10-26T21:42:07,240 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,241 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:07,241 | ^~~~~~~~~~~ 2022-10-26T21:42:07,242 | P7_PROFILE 2022-10-26T21:42:07,245 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,245 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:07,245 | ^~~~~~~~~~~ 2022-10-26T21:42:07,246 | P7_PROFILE 2022-10-26T21:42:07,248 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,248 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:07,249 | ^~~~~~~~~~~ 2022-10-26T21:42:07,249 | P7_PROFILE 2022-10-26T21:42:07,250 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,250 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:07,250 | ^~~~~~~~~~~ 2022-10-26T21:42:07,251 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,251 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:07,251 | ^~~~~~~~~~~ 2022-10-26T21:42:07,254 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,255 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:07,255 | ^~~~~~~~~~~ 2022-10-26T21:42:07,255 | P7_PROFILE 2022-10-26T21:42:07,256 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,257 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:07,257 | ^~~~~~~~~~~ 2022-10-26T21:42:07,258 | P7_PROFILE 2022-10-26T21:42:07,265 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,265 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:07,266 | ^~~~~~~~~~~ 2022-10-26T21:42:07,266 | P7_PROFILE 2022-10-26T21:42:07,297 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-10-26T21:42:07,299 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o 2022-10-26T21:42:07,356 In file included from vendor/hmmer/src/hmmer.c:18: 2022-10-26T21:42:07,356 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:07,356 829 | #error "No vector implementation enabled" 2022-10-26T21:42:07,357 | ^~~~~ 2022-10-26T21:42:07,357 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,357 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:07,358 | ^~~~~~ 2022-10-26T21:42:07,358 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,358 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:07,358 | ^~~~~~ 2022-10-26T21:42:07,359 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,359 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:07,359 | ^~~~~~ 2022-10-26T21:42:07,360 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,360 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:07,361 | ^~~~~~ 2022-10-26T21:42:07,362 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,362 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:07,363 | ^~~~~~~~~~~ 2022-10-26T21:42:07,363 | P7_PROFILE 2022-10-26T21:42:07,364 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,365 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:07,365 | ^~~~~~~~~~~ 2022-10-26T21:42:07,366 | P7_PROFILE 2022-10-26T21:42:07,367 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,368 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:07,368 | ^~~~~~~~~~~ 2022-10-26T21:42:07,368 | P7_PROFILE 2022-10-26T21:42:07,369 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,370 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:07,370 | ^~~~~~~~~~~ 2022-10-26T21:42:07,370 | P7_PROFILE 2022-10-26T21:42:07,373 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,374 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:07,374 | ^~~~~~~~~~~ 2022-10-26T21:42:07,376 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,377 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:07,377 | ^~~~~~~~~~~ 2022-10-26T21:42:07,377 | P7_PROFILE 2022-10-26T21:42:07,378 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,378 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:07,379 | ^~~~~~~~~~~ 2022-10-26T21:42:07,379 | P7_PROFILE 2022-10-26T21:42:07,383 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,383 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,384 | ^~~~~~~~~~~ 2022-10-26T21:42:07,384 | P7_PROFILE 2022-10-26T21:42:07,385 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,385 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,385 | ^~~~~~ 2022-10-26T21:42:07,386 | P7_GMX 2022-10-26T21:42:07,390 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,391 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,391 | ^~~~~~ 2022-10-26T21:42:07,391 | P7_GMX 2022-10-26T21:42:07,391 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,391 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,392 | ^~~~~~ 2022-10-26T21:42:07,392 | P7_GMX 2022-10-26T21:42:07,392 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,392 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,393 | ^~~~~~ 2022-10-26T21:42:07,393 | P7_GMX 2022-10-26T21:42:07,396 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,397 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:07,397 | ^~~~~~~~~~~ 2022-10-26T21:42:07,397 | P7_PROFILE 2022-10-26T21:42:07,403 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,404 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:07,404 | ^~~~~~~~~~~ 2022-10-26T21:42:07,404 | P7_PROFILE 2022-10-26T21:42:07,404 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,404 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:07,404 | ^~~~~~~~~~~ 2022-10-26T21:42:07,405 | P7_PROFILE 2022-10-26T21:42:07,405 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,405 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:07,405 | ^~~~~~~~~~~ 2022-10-26T21:42:07,405 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,405 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:07,406 | ^~~~~~~~~~~ 2022-10-26T21:42:07,406 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,406 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:07,406 | ^~~~~~~~~~~ 2022-10-26T21:42:07,406 | P7_PROFILE 2022-10-26T21:42:07,408 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,408 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:07,408 | ^~~~~~~~~~~ 2022-10-26T21:42:07,408 | P7_PROFILE 2022-10-26T21:42:07,409 In file included from vendor/hmmer/src/tracealign.c:15: 2022-10-26T21:42:07,409 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:07,409 829 | #error "No vector implementation enabled" 2022-10-26T21:42:07,409 | ^~~~~ 2022-10-26T21:42:07,409 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,410 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:07,410 | ^~~~~~ 2022-10-26T21:42:07,411 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,411 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:07,411 | ^~~~~~ 2022-10-26T21:42:07,412 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,412 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:07,413 | ^~~~~~ 2022-10-26T21:42:07,413 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,413 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:07,413 | ^~~~~~ 2022-10-26T21:42:07,413 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,414 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:07,414 | ^~~~~~~~~~~ 2022-10-26T21:42:07,415 | P7_PROFILE 2022-10-26T21:42:07,415 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,415 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:07,416 | ^~~~~~~~~~~ 2022-10-26T21:42:07,416 | P7_PROFILE 2022-10-26T21:42:07,430 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,430 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:07,430 | ^~~~~~~~~~~ 2022-10-26T21:42:07,431 | P7_PROFILE 2022-10-26T21:42:07,431 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-10-26T21:42:07,432 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:07,432 829 | #error "No vector implementation enabled" 2022-10-26T21:42:07,432 | ^~~~~ 2022-10-26T21:42:07,432 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,433 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:07,433 | ^~~~~~ 2022-10-26T21:42:07,433 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,433 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:07,433 | ^~~~~~ 2022-10-26T21:42:07,434 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,434 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:07,434 | ^~~~~~ 2022-10-26T21:42:07,435 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,435 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:07,435 | ^~~~~~ 2022-10-26T21:42:07,436 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,436 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:07,436 | ^~~~~~~~~~~ 2022-10-26T21:42:07,436 | P7_PROFILE 2022-10-26T21:42:07,437 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,437 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:07,438 | ^~~~~~~~~~~ 2022-10-26T21:42:07,438 | P7_PROFILE 2022-10-26T21:42:07,438 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,438 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:07,439 | ^~~~~~~~~~~ 2022-10-26T21:42:07,439 | P7_PROFILE 2022-10-26T21:42:07,439 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,439 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:07,440 | ^~~~~~~~~~~ 2022-10-26T21:42:07,440 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,450 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:07,451 | ^~~~~~~~~~~ 2022-10-26T21:42:07,451 | P7_PROFILE 2022-10-26T21:42:07,452 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-10-26T21:42:07,452 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,452 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:07,453 | ^~~~~~~~~~~ 2022-10-26T21:42:07,453 | P7_PROFILE 2022-10-26T21:42:07,453 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o 2022-10-26T21:42:07,453 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,454 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:07,454 | ^~~~~~~~~~~ 2022-10-26T21:42:07,455 | P7_PROFILE 2022-10-26T21:42:07,455 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,455 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:07,455 | ^~~~~~~~~~~ 2022-10-26T21:42:07,456 | P7_PROFILE 2022-10-26T21:42:07,456 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,456 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,456 | ^~~~~~~~~~~ 2022-10-26T21:42:07,457 | P7_PROFILE 2022-10-26T21:42:07,457 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,457 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,457 | ^~~~~~ 2022-10-26T21:42:07,458 | P7_GMX 2022-10-26T21:42:07,458 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,459 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:07,459 | ^~~~~~~~~~~ 2022-10-26T21:42:07,460 | P7_PROFILE 2022-10-26T21:42:07,460 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,460 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,461 | ^~~~~~ 2022-10-26T21:42:07,461 | P7_GMX 2022-10-26T21:42:07,461 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,461 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:07,461 | ^~~~~~~~~~~ 2022-10-26T21:42:07,462 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,462 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,462 | ^~~~~~ 2022-10-26T21:42:07,463 | P7_GMX 2022-10-26T21:42:07,463 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,464 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:07,464 | ^~~~~~~~~~~ 2022-10-26T21:42:07,464 | P7_PROFILE 2022-10-26T21:42:07,464 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,465 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,465 | ^~~~~~ 2022-10-26T21:42:07,466 | P7_GMX 2022-10-26T21:42:07,466 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,467 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:07,467 | ^~~~~~~~~~~ 2022-10-26T21:42:07,467 | P7_PROFILE 2022-10-26T21:42:07,467 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,467 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:07,468 | ^~~~~~~~~~~ 2022-10-26T21:42:07,468 | P7_PROFILE 2022-10-26T21:42:07,468 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,469 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:07,469 | ^~~~~~~~~~~ 2022-10-26T21:42:07,469 | P7_PROFILE 2022-10-26T21:42:07,469 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,470 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:07,470 | ^~~~~~~~~~~ 2022-10-26T21:42:07,470 | P7_PROFILE 2022-10-26T21:42:07,470 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,470 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,471 | ^~~~~~~~~~~ 2022-10-26T21:42:07,471 | P7_PROFILE 2022-10-26T21:42:07,471 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,472 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:07,472 | ^~~~~~~~~~~ 2022-10-26T21:42:07,472 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,473 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:07,473 | ^~~~~~~~~~~ 2022-10-26T21:42:07,473 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,473 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,473 | ^~~~~~ 2022-10-26T21:42:07,474 | P7_GMX 2022-10-26T21:42:07,474 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,474 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:07,474 | ^~~~~~~~~~~ 2022-10-26T21:42:07,474 | P7_PROFILE 2022-10-26T21:42:07,475 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,475 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,475 | ^~~~~~ 2022-10-26T21:42:07,475 | P7_GMX 2022-10-26T21:42:07,475 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,476 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:07,476 | ^~~~~~~~~~~ 2022-10-26T21:42:07,476 | P7_PROFILE 2022-10-26T21:42:07,476 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,476 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:07,477 | ^~~~~~~~~~~ 2022-10-26T21:42:07,477 | P7_PROFILE 2022-10-26T21:42:07,480 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,481 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,481 | ^~~~~~ 2022-10-26T21:42:07,482 | P7_GMX 2022-10-26T21:42:07,483 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-10-26T21:42:07,483 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,483 239 | P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-10-26T21:42:07,483 | ^~~~~~ 2022-10-26T21:42:07,484 | P7_GMX 2022-10-26T21:42:07,484 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,484 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,485 | ^~~~~~ 2022-10-26T21:42:07,485 | P7_GMX 2022-10-26T21:42:07,486 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,486 240 | P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-10-26T21:42:07,486 | ^~~~~~ 2022-10-26T21:42:07,487 | P7_GMX 2022-10-26T21:42:07,487 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,487 244 | P7_OPROFILE *om = NULL; 2022-10-26T21:42:07,488 | ^~~~~~~~~~~ 2022-10-26T21:42:07,488 | P7_PROFILE 2022-10-26T21:42:07,489 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,489 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:07,490 | ^~~~~~~~~~~ 2022-10-26T21:42:07,490 | P7_PROFILE 2022-10-26T21:42:07,490 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,490 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-10-26T21:42:07,491 | ^~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,491 | p7_profile_Create 2022-10-26T21:42:07,491 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-10-26T21:42:07,491 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-10-26T21:42:07,491 | ^ 2022-10-26T21:42:07,494 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,494 258 | p7_oprofile_Convert(gm, om); 2022-10-26T21:42:07,495 | ^~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,495 | p7_profile_Compare 2022-10-26T21:42:07,496 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,496 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-10-26T21:42:07,497 | ^~~~~~~~~~~~~ 2022-10-26T21:42:07,497 | p7_gmx_Create 2022-10-26T21:42:07,497 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-10-26T21:42:07,498 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-10-26T21:42:07,498 | ^ 2022-10-26T21:42:07,498 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-10-26T21:42:07,499 262 | oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-10-26T21:42:07,499 | ^ 2022-10-26T21:42:07,499 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,499 271 | p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-10-26T21:42:07,499 | ^~~~~~~~~~~~~ 2022-10-26T21:42:07,500 | p7_gmx_GrowTo 2022-10-26T21:42:07,500 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,501 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:07,501 | ^~~~~~~~~~~ 2022-10-26T21:42:07,502 | P7_PROFILE 2022-10-26T21:42:07,504 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,504 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:07,504 | ^~~~~~~~~~~ 2022-10-26T21:42:07,504 | P7_PROFILE 2022-10-26T21:42:07,505 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,506 274 | p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-10-26T21:42:07,506 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,506 | p7_ReconfigLength 2022-10-26T21:42:07,507 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,507 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:07,507 | ^~~~~~~~~~~ 2022-10-26T21:42:07,508 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,509 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:07,509 | ^~~~~~~~~~~ 2022-10-26T21:42:07,510 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,510 276 | p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-10-26T21:42:07,510 | ^~~~~~~~~~ 2022-10-26T21:42:07,511 | p7_GForward 2022-10-26T21:42:07,511 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,512 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:07,512 | ^~~~~~~~~~~ 2022-10-26T21:42:07,512 | P7_PROFILE 2022-10-26T21:42:07,512 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,513 277 | p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-10-26T21:42:07,513 | ^~~~~~~~~~~ 2022-10-26T21:42:07,513 | p7_GBackward 2022-10-26T21:42:07,513 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,513 279 | status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-10-26T21:42:07,514 | ^~~~~~~~~~~ 2022-10-26T21:42:07,514 | p7_GDecoding 2022-10-26T21:42:07,516 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,516 283 | p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-10-26T21:42:07,517 | ^~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,517 | p7_GOptimalAccuracy 2022-10-26T21:42:07,519 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,519 284 | p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-10-26T21:42:07,519 | ^~~~~~~~~~ 2022-10-26T21:42:07,519 | p7_GOATrace 2022-10-26T21:42:07,520 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,521 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:07,521 | ^~~~~~~~~~~ 2022-10-26T21:42:07,522 | P7_PROFILE 2022-10-26T21:42:07,523 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,523 346 | p7_omx_Reuse(oxf); 2022-10-26T21:42:07,524 | ^~~~~~~~~~~~ 2022-10-26T21:42:07,524 | p7_gmx_Reuse 2022-10-26T21:42:07,526 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,526 357 | p7_omx_Destroy(oxf); 2022-10-26T21:42:07,526 | ^~~~~~~~~~~~~~ 2022-10-26T21:42:07,526 | p7_gmx_Destroy 2022-10-26T21:42:07,527 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,527 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:07,528 | ^~~~~~~~~~~ 2022-10-26T21:42:07,528 | P7_PROFILE 2022-10-26T21:42:07,529 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,529 363 | p7_oprofile_Destroy(om); 2022-10-26T21:42:07,530 | ^~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,530 | p7_profile_Destroy 2022-10-26T21:42:07,550 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-10-26T21:42:07,551 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o 2022-10-26T21:42:07,575 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-10-26T21:42:07,576 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:07,576 829 | #error "No vector implementation enabled" 2022-10-26T21:42:07,576 | ^~~~~ 2022-10-26T21:42:07,577 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,577 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:07,577 | ^~~~~~ 2022-10-26T21:42:07,578 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,578 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:07,578 | ^~~~~~ 2022-10-26T21:42:07,578 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,579 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:07,579 | ^~~~~~ 2022-10-26T21:42:07,579 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,580 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:07,580 | ^~~~~~ 2022-10-26T21:42:07,582 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,582 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:07,583 | ^~~~~~~~~~~ 2022-10-26T21:42:07,583 | P7_PROFILE 2022-10-26T21:42:07,584 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,585 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:07,585 | ^~~~~~~~~~~ 2022-10-26T21:42:07,585 | P7_PROFILE 2022-10-26T21:42:07,587 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,587 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:07,588 | ^~~~~~~~~~~ 2022-10-26T21:42:07,588 | P7_PROFILE 2022-10-26T21:42:07,590 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,590 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:07,591 | ^~~~~~~~~~~ 2022-10-26T21:42:07,591 | P7_PROFILE 2022-10-26T21:42:07,592 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,592 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:07,593 | ^~~~~~~~~~~ 2022-10-26T21:42:07,595 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,596 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:07,596 | ^~~~~~~~~~~ 2022-10-26T21:42:07,597 | P7_PROFILE 2022-10-26T21:42:07,599 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,599 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:07,600 | ^~~~~~~~~~~ 2022-10-26T21:42:07,600 | P7_PROFILE 2022-10-26T21:42:07,604 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-10-26T21:42:07,604 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o 2022-10-26T21:42:07,609 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,610 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,610 | ^~~~~~~~~~~ 2022-10-26T21:42:07,610 | P7_PROFILE 2022-10-26T21:42:07,613 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,614 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,614 | ^~~~~~ 2022-10-26T21:42:07,614 | P7_GMX 2022-10-26T21:42:07,616 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,617 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,617 | ^~~~~~ 2022-10-26T21:42:07,617 | P7_GMX 2022-10-26T21:42:07,619 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,620 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,620 | ^~~~~~ 2022-10-26T21:42:07,621 | P7_GMX 2022-10-26T21:42:07,622 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,622 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,622 | ^~~~~~ 2022-10-26T21:42:07,623 | P7_GMX 2022-10-26T21:42:07,626 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,627 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:07,627 | ^~~~~~~~~~~ 2022-10-26T21:42:07,627 | P7_PROFILE 2022-10-26T21:42:07,629 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,629 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:07,630 | ^~~~~~~~~~~ 2022-10-26T21:42:07,630 | P7_PROFILE 2022-10-26T21:42:07,633 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,633 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:07,633 | ^~~~~~~~~~~ 2022-10-26T21:42:07,633 | P7_PROFILE 2022-10-26T21:42:07,634 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,634 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:07,634 | ^~~~~~~~~~~ 2022-10-26T21:42:07,634 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,635 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:07,635 | ^~~~~~~~~~~ 2022-10-26T21:42:07,637 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,638 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:07,638 | ^~~~~~~~~~~ 2022-10-26T21:42:07,638 | P7_PROFILE 2022-10-26T21:42:07,640 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,640 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:07,641 | ^~~~~~~~~~~ 2022-10-26T21:42:07,641 | P7_PROFILE 2022-10-26T21:42:07,646 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,646 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:07,646 | ^~~~~~~~~~~ 2022-10-26T21:42:07,646 | P7_PROFILE 2022-10-26T21:42:07,648 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-10-26T21:42:07,668 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,669 191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-10-26T21:42:07,669 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,669 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,669 198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-10-26T21:42:07,669 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,670 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,670 203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-10-26T21:42:07,670 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,670 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,671 208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-10-26T21:42:07,671 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,671 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,671 213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-10-26T21:42:07,671 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,672 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,672 218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-10-26T21:42:07,672 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,672 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:42:07,672 253 | if (ser_size != ptr - (*buf + *n)){ 2022-10-26T21:42:07,673 | ^~ 2022-10-26T21:42:07,673 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-10-26T21:42:07,673 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,673 341 | ret_obj->envsc = *((float *) &host_32bit); 2022-10-26T21:42:07,673 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,674 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,674 347 | ret_obj->domcorrection = *((float *) &host_32bit); 2022-10-26T21:42:07,674 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,674 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,675 353 | ret_obj->dombias = *((float *) &host_32bit); 2022-10-26T21:42:07,675 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,675 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,675 359 | ret_obj->oasc = *((float *) &host_32bit); 2022-10-26T21:42:07,675 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,675 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,676 365 | ret_obj->bitscore = *((float *) &host_32bit); 2022-10-26T21:42:07,676 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,676 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,676 371 | ret_obj->lnP = *((double *) &host_64bit); 2022-10-26T21:42:07,677 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,677 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-10-26T21:42:07,677 398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-10-26T21:42:07,677 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,678 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:07,678 404 | if(ptr - (buf + *n) != obj_size){ 2022-10-26T21:42:07,678 | ^~ 2022-10-26T21:42:07,729 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-10-26T21:42:07,730 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o 2022-10-26T21:42:07,808 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-10-26T21:42:07,808 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:07,809 829 | #error "No vector implementation enabled" 2022-10-26T21:42:07,809 | ^~~~~ 2022-10-26T21:42:07,809 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,810 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:07,810 | ^~~~~~ 2022-10-26T21:42:07,810 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,810 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:07,811 | ^~~~~~ 2022-10-26T21:42:07,811 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,811 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:07,811 | ^~~~~~ 2022-10-26T21:42:07,811 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,812 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:07,812 | ^~~~~~ 2022-10-26T21:42:07,814 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,815 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:07,815 | ^~~~~~~~~~~ 2022-10-26T21:42:07,815 | P7_PROFILE 2022-10-26T21:42:07,816 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,817 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:07,818 | ^~~~~~~~~~~ 2022-10-26T21:42:07,818 | P7_PROFILE 2022-10-26T21:42:07,819 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,820 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:07,820 | ^~~~~~~~~~~ 2022-10-26T21:42:07,821 | P7_PROFILE 2022-10-26T21:42:07,822 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,822 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:07,822 | ^~~~~~~~~~~ 2022-10-26T21:42:07,822 | P7_PROFILE 2022-10-26T21:42:07,831 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,831 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:07,832 | ^~~~~~~~~~~ 2022-10-26T21:42:07,832 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,832 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:07,832 | ^~~~~~~~~~~ 2022-10-26T21:42:07,833 | P7_PROFILE 2022-10-26T21:42:07,833 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,834 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:07,834 | ^~~~~~~~~~~ 2022-10-26T21:42:07,834 | P7_PROFILE 2022-10-26T21:42:07,835 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,835 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,835 | ^~~~~~~~~~~ 2022-10-26T21:42:07,835 | P7_PROFILE 2022-10-26T21:42:07,836 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,836 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,837 | ^~~~~~ 2022-10-26T21:42:07,837 | P7_GMX 2022-10-26T21:42:07,838 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,839 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,839 | ^~~~~~ 2022-10-26T21:42:07,839 | P7_GMX 2022-10-26T21:42:07,847 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,847 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,848 | ^~~~~~ 2022-10-26T21:42:07,848 | P7_GMX 2022-10-26T21:42:07,848 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,849 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,849 | ^~~~~~ 2022-10-26T21:42:07,849 | P7_GMX 2022-10-26T21:42:07,849 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,850 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:07,850 | ^~~~~~~~~~~ 2022-10-26T21:42:07,851 | P7_PROFILE 2022-10-26T21:42:07,851 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,851 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:07,852 | ^~~~~~~~~~~ 2022-10-26T21:42:07,852 | P7_PROFILE 2022-10-26T21:42:07,860 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,860 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:07,861 | ^~~~~~~~~~~ 2022-10-26T21:42:07,861 | P7_PROFILE 2022-10-26T21:42:07,861 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,861 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:07,862 | ^~~~~~~~~~~ 2022-10-26T21:42:07,862 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,863 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:07,863 | ^~~~~~~~~~~ 2022-10-26T21:42:07,863 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,863 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:07,864 | ^~~~~~~~~~~ 2022-10-26T21:42:07,864 | P7_PROFILE 2022-10-26T21:42:07,864 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,864 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:07,864 | ^~~~~~~~~~~ 2022-10-26T21:42:07,865 | P7_PROFILE 2022-10-26T21:42:07,865 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,865 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:07,865 | ^~~~~~~~~~~ 2022-10-26T21:42:07,865 | P7_PROFILE 2022-10-26T21:42:07,880 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-10-26T21:42:07,881 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:07,881 829 | #error "No vector implementation enabled" 2022-10-26T21:42:07,881 | ^~~~~ 2022-10-26T21:42:07,882 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,882 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:07,882 | ^~~~~~ 2022-10-26T21:42:07,883 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,883 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:07,883 | ^~~~~~ 2022-10-26T21:42:07,883 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,884 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:07,884 | ^~~~~~ 2022-10-26T21:42:07,884 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:07,884 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:07,885 | ^~~~~~ 2022-10-26T21:42:07,885 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-10-26T21:42:07,886 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o 2022-10-26T21:42:07,887 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,888 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:07,888 | ^~~~~~~~~~~ 2022-10-26T21:42:07,888 | P7_PROFILE 2022-10-26T21:42:07,890 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,890 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:07,891 | ^~~~~~~~~~~ 2022-10-26T21:42:07,891 | P7_PROFILE 2022-10-26T21:42:07,893 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,894 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:07,894 | ^~~~~~~~~~~ 2022-10-26T21:42:07,894 | P7_PROFILE 2022-10-26T21:42:07,895 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,895 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:07,895 | ^~~~~~~~~~~ 2022-10-26T21:42:07,896 | P7_PROFILE 2022-10-26T21:42:07,899 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,900 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:07,900 | ^~~~~~~~~~~ 2022-10-26T21:42:07,901 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,902 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:07,902 | ^~~~~~~~~~~ 2022-10-26T21:42:07,903 | P7_PROFILE 2022-10-26T21:42:07,905 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,905 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:07,905 | ^~~~~~~~~~~ 2022-10-26T21:42:07,906 | P7_PROFILE 2022-10-26T21:42:07,907 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,908 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,908 | ^~~~~~~~~~~ 2022-10-26T21:42:07,908 | P7_PROFILE 2022-10-26T21:42:07,910 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,911 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,911 | ^~~~~~ 2022-10-26T21:42:07,911 | P7_GMX 2022-10-26T21:42:07,913 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,914 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,914 | ^~~~~~ 2022-10-26T21:42:07,915 | P7_GMX 2022-10-26T21:42:07,916 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,917 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,917 | ^~~~~~ 2022-10-26T21:42:07,917 | P7_GMX 2022-10-26T21:42:07,919 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:07,919 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:07,920 | ^~~~~~ 2022-10-26T21:42:07,920 | P7_GMX 2022-10-26T21:42:07,923 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,924 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:07,925 | ^~~~~~~~~~~ 2022-10-26T21:42:07,925 | P7_PROFILE 2022-10-26T21:42:07,929 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,930 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:07,930 | ^~~~~~~~~~~ 2022-10-26T21:42:07,930 | P7_PROFILE 2022-10-26T21:42:07,930 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,931 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:07,931 | ^~~~~~~~~~~ 2022-10-26T21:42:07,931 | P7_PROFILE 2022-10-26T21:42:07,931 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,932 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:07,932 | ^~~~~~~~~~~ 2022-10-26T21:42:07,933 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,933 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:07,933 | ^~~~~~~~~~~ 2022-10-26T21:42:07,935 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,935 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:07,936 | ^~~~~~~~~~~ 2022-10-26T21:42:07,936 | P7_PROFILE 2022-10-26T21:42:07,939 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,939 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:07,939 | ^~~~~~~~~~~ 2022-10-26T21:42:07,939 | P7_PROFILE 2022-10-26T21:42:07,943 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,944 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:07,944 | ^~~~~~~~~~~ 2022-10-26T21:42:07,944 | P7_PROFILE 2022-10-26T21:42:07,944 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-10-26T21:42:07,945 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:07,945 13 | P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-10-26T21:42:07,946 | ^~~~~~~~~~~ 2022-10-26T21:42:07,947 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-10-26T21:42:07,948 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,948 55 | P7_OPROFILE *om = NULL; /* target profile */ 2022-10-26T21:42:07,949 | ^~~~~~~~~~~ 2022-10-26T21:42:07,949 | P7_PROFILE 2022-10-26T21:42:07,952 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-10-26T21:42:07,952 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,952 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-26T21:42:07,953 | ^~~~~~~~~~~ 2022-10-26T21:42:07,953 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-10-26T21:42:07,953 158 | if ( size <= 0 ) { \ 2022-10-26T21:42:07,953 | ^~~~ 2022-10-26T21:42:07,953 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-10-26T21:42:07,953 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-26T21:42:07,954 | ^~~~~~~~~~~ 2022-10-26T21:42:07,954 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-10-26T21:42:07,954 158 | if ( size <= 0 ) { \ 2022-10-26T21:42:07,954 | ^~~~ 2022-10-26T21:42:07,955 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-10-26T21:42:07,955 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-26T21:42:07,956 | ^ 2022-10-26T21:42:07,956 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-10-26T21:42:07,956 158 | if ( size <= 0 ) { \ 2022-10-26T21:42:07,956 | ^~~~ 2022-10-26T21:42:07,957 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-10-26T21:42:07,957 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-26T21:42:07,957 | ^ 2022-10-26T21:42:07,957 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-10-26T21:42:07,957 164 | if ( ((p) = malloc(size)) == NULL) { \ 2022-10-26T21:42:07,958 | ^~~~ 2022-10-26T21:42:07,958 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-10-26T21:42:07,958 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-10-26T21:42:07,958 | ^ 2022-10-26T21:42:07,958 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-10-26T21:42:07,958 166 | esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-10-26T21:42:07,959 | ^~~~ 2022-10-26T21:42:07,959 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,959 70 | while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-10-26T21:42:07,959 | ^~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,959 | p7_profile_Reuse 2022-10-26T21:42:07,961 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,961 72 | if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-10-26T21:42:07,961 | ^~~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,962 | p7_profile_Reuse 2022-10-26T21:42:07,965 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,973 91 | if (om) p7_oprofile_Destroy(om); 2022-10-26T21:42:07,973 | ^~~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,973 | p7_profile_Destroy 2022-10-26T21:42:07,973 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-10-26T21:42:07,974 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,975 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-10-26T21:42:07,976 | ^~~~~~~~~~~ 2022-10-26T21:42:07,976 | P7_PROFILE 2022-10-26T21:42:07,976 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-10-26T21:42:07,977 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-10-26T21:42:07,977 | ^ 2022-10-26T21:42:07,977 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:07,977 110 | for (i = 0; i < cache->n; i++) 2022-10-26T21:42:07,978 | ^ 2022-10-26T21:42:07,978 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-10-26T21:42:07,978 111 | n += p7_oprofile_Sizeof(cache->list[i]); 2022-10-26T21:42:07,978 | ^~~~~~~~~~~~~~~~~~ 2022-10-26T21:42:07,979 | p7_profile_Sizeof 2022-10-26T21:42:07,979 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-10-26T21:42:07,979 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:07,979 134 | P7_OPROFILE *om; 2022-10-26T21:42:07,980 | ^~~~~~~~~~~ 2022-10-26T21:42:07,980 | P7_PROFILE 2022-10-26T21:42:07,980 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:07,981 138 | for (i = 0; i < cache->n; i++) 2022-10-26T21:42:07,981 | ^ 2022-10-26T21:42:07,981 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-10-26T21:42:07,981 141 | if (om->name) free(om->name); 2022-10-26T21:42:07,982 | ^~ 2022-10-26T21:42:07,982 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-10-26T21:42:07,982 141 | if (om->name) free(om->name); 2022-10-26T21:42:07,982 | ^~ 2022-10-26T21:42:07,982 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-10-26T21:42:07,982 142 | if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-10-26T21:42:07,983 | ^~ 2022-10-26T21:42:07,983 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-10-26T21:42:07,983 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:07,983 161 | for (i = 0; i < cache->n; i++) 2022-10-26T21:42:07,983 | ^ 2022-10-26T21:42:08,000 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-10-26T21:42:08,001 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:08,001 829 | #error "No vector implementation enabled" 2022-10-26T21:42:08,001 | ^~~~~ 2022-10-26T21:42:08,001 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,002 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:08,002 | ^~~~~~ 2022-10-26T21:42:08,003 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,003 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:08,004 | ^~~~~~ 2022-10-26T21:42:08,004 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,004 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:08,004 | ^~~~~~ 2022-10-26T21:42:08,005 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,005 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:08,005 | ^~~~~~ 2022-10-26T21:42:08,006 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-10-26T21:42:08,006 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:08,006 829 | #error "No vector implementation enabled" 2022-10-26T21:42:08,006 | ^~~~~ 2022-10-26T21:42:08,007 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,007 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:08,008 | ^~~~~~ 2022-10-26T21:42:08,009 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,009 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:08,009 | ^~~~~~~~~~~ 2022-10-26T21:42:08,010 | P7_PROFILE 2022-10-26T21:42:08,010 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,010 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:08,010 | ^~~~~~ 2022-10-26T21:42:08,011 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,011 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:08,012 | ^~~~~~ 2022-10-26T21:42:08,012 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,012 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:08,013 | ^~~~~~ 2022-10-26T21:42:08,013 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,013 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:08,013 | ^~~~~~~~~~~ 2022-10-26T21:42:08,014 | P7_PROFILE 2022-10-26T21:42:08,014 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,015 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:08,015 | ^~~~~~~~~~~ 2022-10-26T21:42:08,016 | P7_PROFILE 2022-10-26T21:42:08,016 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,016 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:08,016 | ^~~~~~~~~~~ 2022-10-26T21:42:08,016 | P7_PROFILE 2022-10-26T21:42:08,017 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,017 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:08,018 | ^~~~~~~~~~~ 2022-10-26T21:42:08,018 | P7_PROFILE 2022-10-26T21:42:08,019 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,019 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:08,019 | ^~~~~~~~~~~ 2022-10-26T21:42:08,019 | P7_PROFILE 2022-10-26T21:42:08,019 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,020 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:08,020 | ^~~~~~~~~~~ 2022-10-26T21:42:08,020 | P7_PROFILE 2022-10-26T21:42:08,021 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:08,022 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:08,022 | ^~~~~~~~~~~ 2022-10-26T21:42:08,022 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,023 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:08,023 | ^~~~~~~~~~~ 2022-10-26T21:42:08,023 | P7_PROFILE 2022-10-26T21:42:08,024 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,025 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:08,025 | ^~~~~~~~~~~ 2022-10-26T21:42:08,025 | P7_PROFILE 2022-10-26T21:42:08,026 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:08,026 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:08,026 | ^~~~~~~~~~~ 2022-10-26T21:42:08,027 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,027 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:08,028 | ^~~~~~~~~~~ 2022-10-26T21:42:08,028 | P7_PROFILE 2022-10-26T21:42:08,029 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,029 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,029 | ^~~~~~~~~~~ 2022-10-26T21:42:08,029 | P7_PROFILE 2022-10-26T21:42:08,030 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,031 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:08,031 | ^~~~~~~~~~~ 2022-10-26T21:42:08,032 | P7_PROFILE 2022-10-26T21:42:08,032 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,032 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,033 | ^~~~~~ 2022-10-26T21:42:08,033 | P7_GMX 2022-10-26T21:42:08,033 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,034 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:08,035 | ^~~~~~~~~~~ 2022-10-26T21:42:08,035 | P7_PROFILE 2022-10-26T21:42:08,035 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,036 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,036 | ^~~~~~ 2022-10-26T21:42:08,036 | P7_GMX 2022-10-26T21:42:08,036 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,036 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,036 | ^~~~~~~~~~~ 2022-10-26T21:42:08,036 | P7_PROFILE 2022-10-26T21:42:08,037 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,037 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,038 | ^~~~~~ 2022-10-26T21:42:08,038 | P7_GMX 2022-10-26T21:42:08,039 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,039 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,039 | ^~~~~~ 2022-10-26T21:42:08,039 | P7_GMX 2022-10-26T21:42:08,040 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,040 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,040 | ^~~~~~ 2022-10-26T21:42:08,040 | P7_GMX 2022-10-26T21:42:08,040 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,041 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,041 | ^~~~~~ 2022-10-26T21:42:08,042 | P7_GMX 2022-10-26T21:42:08,042 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,042 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,043 | ^~~~~~ 2022-10-26T21:42:08,043 | P7_GMX 2022-10-26T21:42:08,043 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,043 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:08,044 | ^~~~~~~~~~~ 2022-10-26T21:42:08,044 | P7_PROFILE 2022-10-26T21:42:08,045 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,045 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,046 | ^~~~~~ 2022-10-26T21:42:08,046 | P7_GMX 2022-10-26T21:42:08,046 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,046 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:08,046 | ^~~~~~~~~~~ 2022-10-26T21:42:08,047 | P7_PROFILE 2022-10-26T21:42:08,047 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,047 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:08,047 | ^~~~~~~~~~~ 2022-10-26T21:42:08,047 | P7_PROFILE 2022-10-26T21:42:08,047 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,048 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:08,048 | ^~~~~~~~~~~ 2022-10-26T21:42:08,048 | P7_PROFILE 2022-10-26T21:42:08,049 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:08,049 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:08,049 | ^~~~~~~~~~~ 2022-10-26T21:42:08,050 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:08,050 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:08,050 | ^~~~~~~~~~~ 2022-10-26T21:42:08,051 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,051 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:08,051 | ^~~~~~~~~~~ 2022-10-26T21:42:08,052 | P7_PROFILE 2022-10-26T21:42:08,052 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,052 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:08,053 | ^~~~~~~~~~~ 2022-10-26T21:42:08,053 | P7_PROFILE 2022-10-26T21:42:08,053 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,053 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:08,054 | ^~~~~~~~~~~ 2022-10-26T21:42:08,054 | P7_PROFILE 2022-10-26T21:42:08,054 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,054 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:08,054 | ^~~~~~~~~~~ 2022-10-26T21:42:08,055 | P7_PROFILE 2022-10-26T21:42:08,055 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:08,055 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:08,055 | ^~~~~~~~~~~ 2022-10-26T21:42:08,055 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:08,055 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:08,056 | ^~~~~~~~~~~ 2022-10-26T21:42:08,056 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,056 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:08,056 | ^~~~~~~~~~~ 2022-10-26T21:42:08,057 | P7_PROFILE 2022-10-26T21:42:08,057 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,058 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:08,058 | ^~~~~~~~~~~ 2022-10-26T21:42:08,058 | P7_PROFILE 2022-10-26T21:42:08,058 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,058 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:08,059 | ^~~~~~~~~~~ 2022-10-26T21:42:08,059 | P7_PROFILE 2022-10-26T21:42:08,059 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,059 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:08,060 | ^~~~~~~~~~~ 2022-10-26T21:42:08,060 | P7_PROFILE 2022-10-26T21:42:08,118 In file included from vendor/hmmer/src/fm_general.c:14: 2022-10-26T21:42:08,118 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-10-26T21:42:08,118 829 | #error "No vector implementation enabled" 2022-10-26T21:42:08,118 | ^~~~~ 2022-10-26T21:42:08,119 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,119 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-10-26T21:42:08,119 | ^~~~~~ 2022-10-26T21:42:08,120 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,120 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-10-26T21:42:08,120 | ^~~~~~ 2022-10-26T21:42:08,120 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,120 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-10-26T21:42:08,121 | ^~~~~~ 2022-10-26T21:42:08,121 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-10-26T21:42:08,121 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-10-26T21:42:08,122 | ^~~~~~ 2022-10-26T21:42:08,123 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,124 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-10-26T21:42:08,124 | ^~~~~~~~~~~ 2022-10-26T21:42:08,124 | P7_PROFILE 2022-10-26T21:42:08,125 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,126 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-10-26T21:42:08,126 | ^~~~~~~~~~~ 2022-10-26T21:42:08,127 | P7_PROFILE 2022-10-26T21:42:08,128 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,128 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-10-26T21:42:08,129 | ^~~~~~~~~~~ 2022-10-26T21:42:08,129 | P7_PROFILE 2022-10-26T21:42:08,130 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,130 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-10-26T21:42:08,130 | ^~~~~~~~~~~ 2022-10-26T21:42:08,131 | P7_PROFILE 2022-10-26T21:42:08,132 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:08,132 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-10-26T21:42:08,133 | ^~~~~~~~~~~ 2022-10-26T21:42:08,135 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,136 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-10-26T21:42:08,136 | ^~~~~~~~~~~ 2022-10-26T21:42:08,136 | P7_PROFILE 2022-10-26T21:42:08,138 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,138 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-10-26T21:42:08,139 | ^~~~~~~~~~~ 2022-10-26T21:42:08,139 | P7_PROFILE 2022-10-26T21:42:08,141 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,141 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,141 | ^~~~~~~~~~~ 2022-10-26T21:42:08,142 | P7_PROFILE 2022-10-26T21:42:08,143 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,144 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,144 | ^~~~~~ 2022-10-26T21:42:08,144 | P7_GMX 2022-10-26T21:42:08,145 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,146 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,146 | ^~~~~~ 2022-10-26T21:42:08,146 | P7_GMX 2022-10-26T21:42:08,147 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,148 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,148 | ^~~~~~ 2022-10-26T21:42:08,148 | P7_GMX 2022-10-26T21:42:08,149 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-10-26T21:42:08,150 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-10-26T21:42:08,150 | ^~~~~~ 2022-10-26T21:42:08,150 | P7_GMX 2022-10-26T21:42:08,153 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,154 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-10-26T21:42:08,154 | ^~~~~~~~~~~ 2022-10-26T21:42:08,154 | P7_PROFILE 2022-10-26T21:42:08,155 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,156 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-10-26T21:42:08,156 | ^~~~~~~~~~~ 2022-10-26T21:42:08,156 | P7_PROFILE 2022-10-26T21:42:08,158 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,158 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-10-26T21:42:08,158 | ^~~~~~~~~~~ 2022-10-26T21:42:08,158 | P7_PROFILE 2022-10-26T21:42:08,159 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:08,159 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-10-26T21:42:08,159 | ^~~~~~~~~~~ 2022-10-26T21:42:08,159 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-10-26T21:42:08,159 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-10-26T21:42:08,160 | ^~~~~~~~~~~ 2022-10-26T21:42:08,161 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,162 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-10-26T21:42:08,162 | ^~~~~~~~~~~ 2022-10-26T21:42:08,162 | P7_PROFILE 2022-10-26T21:42:08,164 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,164 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-10-26T21:42:08,164 | ^~~~~~~~~~~ 2022-10-26T21:42:08,164 | P7_PROFILE 2022-10-26T21:42:08,168 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-10-26T21:42:08,169 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-10-26T21:42:08,169 | ^~~~~~~~~~~ 2022-10-26T21:42:08,169 | P7_PROFILE 2022-10-26T21:42:08,173 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-10-26T21:42:08,173 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,173 292 | if (ranges[lo].lower > end) return -1; 2022-10-26T21:42:08,173 | ^ 2022-10-26T21:42:08,173 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,173 293 | if (ranges[hi].upper < start) return -1; 2022-10-26T21:42:08,174 | ^ 2022-10-26T21:42:08,174 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,174 297 | if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-10-26T21:42:08,174 | ^ 2022-10-26T21:42:08,174 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,174 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-10-26T21:42:08,174 | ^~ 2022-10-26T21:42:08,175 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,175 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-10-26T21:42:08,175 | ^~ 2022-10-26T21:42:08,175 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,175 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-10-26T21:42:08,175 | ^~ 2022-10-26T21:42:08,175 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,176 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-10-26T21:42:08,176 | ^~ 2022-10-26T21:42:08,176 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-10-26T21:42:08,176 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-10-26T21:42:08,176 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-10-26T21:42:08,176 | ^~ 2022-10-26T21:42:08,177 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,177 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-10-26T21:42:08,177 | ^~ 2022-10-26T21:42:08,177 In file included from vendor/hmmer/src/fm_general.c:12: 2022-10-26T21:42:08,177 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:42:08,177 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-26T21:42:08,177 | ^ 2022-10-26T21:42:08,177 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-10-26T21:42:08,178 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-10-26T21:42:08,178 | ^~~~~~~ 2022-10-26T21:42:08,178 vendor/easel/easel.h:417:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-26T21:42:08,178 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-10-26T21:42:08,178 | ^~~ 2022-10-26T21:42:08,178 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-10-26T21:42:08,179 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-10-26T21:42:08,179 | ^~~~~~~ 2022-10-26T21:42:08,179 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:42:08,179 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-26T21:42:08,179 | ^ 2022-10-26T21:42:08,179 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-10-26T21:42:08,179 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-10-26T21:42:08,180 | ^~~~~~~ 2022-10-26T21:42:08,180 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-10-26T21:42:08,180 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-10-26T21:42:08,180 | ^~~ 2022-10-26T21:42:08,180 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-10-26T21:42:08,180 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-10-26T21:42:08,181 | ^~~~~~~ 2022-10-26T21:42:08,181 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:42:08,181 353 | for (j= start; j<=end; j++) 2022-10-26T21:42:08,181 | ^~ 2022-10-26T21:42:08,183 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-10-26T21:42:08,183 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-10-26T21:42:08,183 537 | (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-10-26T21:42:08,183 | ^~ 2022-10-26T21:42:08,184 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-10-26T21:42:08,184 538 | (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-10-26T21:42:08,184 | ^~ 2022-10-26T21:42:08,185 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-10-26T21:42:08,186 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,186 620 | for (i=0; iseq_count; i++) { 2022-10-26T21:42:08,186 | ^ 2022-10-26T21:42:08,188 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:42:08,188 638 | fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-10-26T21:42:08,189 | ^~ 2022-10-26T21:42:08,189 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:42:08,189 639 | fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-10-26T21:42:08,189 | ^~ 2022-10-26T21:42:08,189 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:42:08,189 640 | fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-10-26T21:42:08,189 | ^~ 2022-10-26T21:42:08,190 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-10-26T21:42:08,190 641 | fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-10-26T21:42:08,190 | ^~ 2022-10-26T21:42:08,190 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,191 651 | for (i=0; iambig_list->count; i++) { 2022-10-26T21:42:08,191 | ^ 2022-10-26T21:42:08,191 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,191 663 | for (i=0; iseq_count; i++) 2022-10-26T21:42:08,191 | ^ 2022-10-26T21:42:08,193 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-10-26T21:42:08,193 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-10-26T21:42:08,193 727 | for (i=0; iseq_count; i++) { 2022-10-26T21:42:08,193 | ^ 2022-10-26T21:42:08,217 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-10-26T21:42:08,384 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-10-26T21:42:08,402 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmptoo4a2a2[/] 2022-10-26T21:42:08,402 [bold magenta]cwd[/]: /tmp/pip-wheel-al_qx3bt/pyhmmer_71e0c8dedd1b40d68885ac9cdbd60538 2022-10-26T21:42:08,402 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-10-26T21:42:08,405 ERROR: Failed building wheel for pyhmmer 2022-10-26T21:42:08,407 Failed to build pyhmmer 2022-10-26T21:42:08,408 ERROR: Failed to build one or more wheels 2022-10-26T21:42:08,409 Exception information: 2022-10-26T21:42:08,409 Traceback (most recent call last): 2022-10-26T21:42:08,409 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-10-26T21:42:08,409 status = run_func(*args) 2022-10-26T21:42:08,409 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-10-26T21:42:08,409 return func(self, options, args) 2022-10-26T21:42:08,409 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-10-26T21:42:08,409 raise CommandError("Failed to build one or more wheels") 2022-10-26T21:42:08,409 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-10-26T21:42:08,413 Removed build tracker: '/tmp/pip-build-tracker-v27w_od2'