2022-10-27T21:34:37,181 Created temporary directory: /tmp/pip-ephem-wheel-cache-_rs4ga_a
2022-10-27T21:34:37,183 Created temporary directory: /tmp/pip-build-tracker-zw779fu9
2022-10-27T21:34:37,183 Initialized build tracking at /tmp/pip-build-tracker-zw779fu9
2022-10-27T21:34:37,183 Created build tracker: /tmp/pip-build-tracker-zw779fu9
2022-10-27T21:34:37,183 Entered build tracker: /tmp/pip-build-tracker-zw779fu9
2022-10-27T21:34:37,184 Created temporary directory: /tmp/pip-wheel-olkz369c
2022-10-27T21:34:37,187 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-27T21:34:37,190 Created temporary directory: /tmp/pip-ephem-wheel-cache-p59g9x6o
2022-10-27T21:34:37,213 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-27T21:34:37,216 2 location(s) to search for versions of scipion-em-emantomo:
2022-10-27T21:34:37,216 * https://pypi.org/simple/scipion-em-emantomo/
2022-10-27T21:34:37,216 * https://www.piwheels.org/simple/scipion-em-emantomo/
2022-10-27T21:34:37,216 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-emantomo/
2022-10-27T21:34:37,217 Getting page https://pypi.org/simple/scipion-em-emantomo/
2022-10-27T21:34:37,218 Found index url https://pypi.org/simple
2022-10-27T21:34:37,269 Fetched page https://pypi.org/simple/scipion-em-emantomo/ as application/vnd.pypi.simple.v1+json
2022-10-27T21:34:37,272   Found link https://files.pythonhosted.org/packages/ab/61/17d1217b3c3da144b7095ba596723929fdc18f16d35e3ae38f3db2f1679a/scipion-em-emantomo-3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.0.0
2022-10-27T21:34:37,272   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/e7/e7/43c0a6e62b0e1f08b20742ad33438df4978fc1f0da7044c1c76be1cf1cec/scipion_em_emantomo-3.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2022-10-27T21:34:37,272   Found link https://files.pythonhosted.org/packages/d9/41/ccdabf257f81d487988937d61333c025e187330c7cffe9559975ea025ca8/scipion-em-emantomo-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.0.1
2022-10-27T21:34:37,272   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/c5/00/efb9b1fc606ade87d30787120839506102b6330709c407f447e22abd0aae/scipion_em_emantomo-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2022-10-27T21:34:37,273   Found link https://files.pythonhosted.org/packages/d4/2e/297e86f8d3b89b16748bafb2af10a28982379aef4f130c4c3d2a6ead5456/scipion-em-emantomo-3.0.2.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.0.2
2022-10-27T21:34:37,273   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/7e/76/f8894d2194f874a45e951ff87c90b6aa571d27eb0295690253c80da44d04/scipion_em_emantomo-3.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2022-10-27T21:34:37,273   Found link https://files.pythonhosted.org/packages/86/fb/3a152dc88faa08186c288176c5d4af84f4f9afcadfe220aa40e3e749a88a/scipion-em-emantomo-3.0.3.tar.gz (from https://pypi.org/simple/scipion-em-emantomo/), version: 3.0.3
2022-10-27T21:34:37,273   Skipping link: No binaries permitted for scipion-em-emantomo: https://files.pythonhosted.org/packages/58/71/ba6f691fe0bacce41f79cd0b74ccdca28adcd2f3af5067e31dd6aecb72af/scipion_em_emantomo-3.0.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emantomo/)
2022-10-27T21:34:37,274 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-emantomo/
2022-10-27T21:34:37,274 Getting page https://www.piwheels.org/simple/scipion-em-emantomo/
2022-10-27T21:34:37,275 Found index url https://www.piwheels.org/simple
2022-10-27T21:34:37,459 Fetched page https://www.piwheels.org/simple/scipion-em-emantomo/ as text/html
2022-10-27T21:34:37,461   Skipping link: No binaries permitted for scipion-em-emantomo: https://www.piwheels.org/simple/scipion-em-emantomo/scipion_em_emantomo-3.0.2-py3-none-any.whl#sha256=02db47c238c36ed754a8dd869799e971fd50c9d7c541196f2ac8d338dc1eb9e7 (from https://www.piwheels.org/simple/scipion-em-emantomo/)
2022-10-27T21:34:37,461   Skipping link: No binaries permitted for scipion-em-emantomo: https://www.piwheels.org/simple/scipion-em-emantomo/scipion_em_emantomo-3.0.1-py3-none-any.whl#sha256=e88fad1a12505a9a4abeda80fa62868c2a3d3640a68d8418c669c8a73d71f267 (from https://www.piwheels.org/simple/scipion-em-emantomo/)
2022-10-27T21:34:37,461   Skipping link: No binaries permitted for scipion-em-emantomo: https://www.piwheels.org/simple/scipion-em-emantomo/scipion_em_emantomo-3.0.0-py3-none-any.whl#sha256=7e2853fb8c94d551df962a36fb759380f5838347cc5810e2ca4eb856027387c4 (from https://www.piwheels.org/simple/scipion-em-emantomo/)
2022-10-27T21:34:37,462 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-emantomo/
2022-10-27T21:34:37,462 Skipping link: not a file: https://pypi.org/simple/scipion-em-emantomo/
2022-10-27T21:34:37,480 Given no hashes to check 1 links for project 'scipion-em-emantomo': discarding no candidates
2022-10-27T21:34:37,497 Collecting scipion-em-emantomo==3.0.3
2022-10-27T21:34:37,499   Created temporary directory: /tmp/pip-unpack-n6qpgfw2
2022-10-27T21:34:37,564   Downloading scipion-em-emantomo-3.0.3.tar.gz (126 kB)
2022-10-27T21:34:37,713   Added scipion-em-emantomo==3.0.3 from https://files.pythonhosted.org/packages/86/fb/3a152dc88faa08186c288176c5d4af84f4f9afcadfe220aa40e3e749a88a/scipion-em-emantomo-3.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-zw779fu9'
2022-10-27T21:34:37,714   Running setup.py (path:/tmp/pip-wheel-olkz369c/scipion-em-emantomo_1c9024e17ffc4d2c8ea99178b274dbba/setup.py) egg_info for package scipion-em-emantomo
2022-10-27T21:34:37,715   Created temporary directory: /tmp/pip-pip-egg-info-lu49u6i5
2022-10-27T21:34:37,715   Preparing metadata (setup.py): started
2022-10-27T21:34:37,716   Running command python setup.py egg_info
2022-10-27T21:34:38,600   Traceback (most recent call last):
2022-10-27T21:34:38,601     File "<string>", line 2, in <module>
2022-10-27T21:34:38,601     File "<pip-setuptools-caller>", line 34, in <module>
2022-10-27T21:34:38,601     File "/tmp/pip-wheel-olkz369c/scipion-em-emantomo_1c9024e17ffc4d2c8ea99178b274dbba/setup.py", line 39, in <module>
2022-10-27T21:34:38,602       from emantomo import __version__
2022-10-27T21:34:38,602     File "/tmp/pip-wheel-olkz369c/scipion-em-emantomo_1c9024e17ffc4d2c8ea99178b274dbba/emantomo/__init__.py", line 31, in <module>
2022-10-27T21:34:38,602       import pwem
2022-10-27T21:34:38,602   ModuleNotFoundError: No module named 'pwem'
2022-10-27T21:34:38,685   ERROR: [present-rich] python setup.py egg_info exited with 1
2022-10-27T21:34:38,702   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2022-10-27T21:34:38,702   exec(compile('"'"''"'"''"'"'
2022-10-27T21:34:38,702   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2022-10-27T21:34:38,702   #
2022-10-27T21:34:38,702   # - It imports setuptools before invoking setup.py, to enable projects that directly
2022-10-27T21:34:38,702   #   import from `distutils.core` to work with newer packaging standards.
2022-10-27T21:34:38,702   # - It provides a clear error message when setuptools is not installed.
2022-10-27T21:34:38,702   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2022-10-27T21:34:38,702   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2022-10-27T21:34:38,702   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2022-10-27T21:34:38,702   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2022-10-27T21:34:38,702   import os, sys, tokenize
2022-10-27T21:34:38,702   
2022-10-27T21:34:38,702   try:
2022-10-27T21:34:38,702       import setuptools
2022-10-27T21:34:38,702   except ImportError as error:
2022-10-27T21:34:38,702       print(
2022-10-27T21:34:38,702           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2022-10-27T21:34:38,702           "the build environment.",
2022-10-27T21:34:38,702           file=sys.stderr,
2022-10-27T21:34:38,702       )
2022-10-27T21:34:38,702       sys.exit(1)
2022-10-27T21:34:38,702   
2022-10-27T21:34:38,702   __file__ = %r
2022-10-27T21:34:38,702   sys.argv[0] = __file__
2022-10-27T21:34:38,702   
2022-10-27T21:34:38,702   if os.path.exists(__file__):
2022-10-27T21:34:38,702       filename = __file__
2022-10-27T21:34:38,702       with tokenize.open(__file__) as f:
2022-10-27T21:34:38,702           setup_py_code = f.read()
2022-10-27T21:34:38,702   else:
2022-10-27T21:34:38,702       filename = "<auto-generated setuptools caller>"
2022-10-27T21:34:38,702       setup_py_code = "from setuptools import setup; setup()"
2022-10-27T21:34:38,702   
2022-10-27T21:34:38,702   exec(compile(setup_py_code, filename, "exec"))
2022-10-27T21:34:38,702   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-olkz369c/scipion-em-emantomo_1c9024e17ffc4d2c8ea99178b274dbba/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-lu49u6i5[/]
2022-10-27T21:34:38,703   [bold magenta]cwd[/]: /tmp/pip-wheel-olkz369c/scipion-em-emantomo_1c9024e17ffc4d2c8ea99178b274dbba/
2022-10-27T21:34:38,703   Preparing metadata (setup.py): finished with status 'error'
2022-10-27T21:34:38,704 ERROR: [present-rich] metadata generation failed
2022-10-27T21:34:38,710 Exception information:
2022-10-27T21:34:38,710 Traceback (most recent call last):
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2022-10-27T21:34:38,710     call_subprocess(
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2022-10-27T21:34:38,710     raise error
2022-10-27T21:34:38,710 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2022-10-27T21:34:38,710 
2022-10-27T21:34:38,710 The above exception was the direct cause of the following exception:
2022-10-27T21:34:38,710 
2022-10-27T21:34:38,710 Traceback (most recent call last):
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
2022-10-27T21:34:38,710     status = run_func(*args)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
2022-10-27T21:34:38,710     return func(self, options, args)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 170, in run
2022-10-27T21:34:38,710     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2022-10-27T21:34:38,710     result = self._result = resolver.resolve(
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve
2022-10-27T21:34:38,710     state = resolution.resolve(requirements, max_rounds=max_rounds)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve
2022-10-27T21:34:38,710     self._add_to_criteria(self.state.criteria, r, parent=None)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria
2022-10-27T21:34:38,710     if not criterion.candidates:
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__
2022-10-27T21:34:38,710     return bool(self._sequence)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2022-10-27T21:34:38,710     return any(self)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2022-10-27T21:34:38,710     return (c for c in iterator if id(c) not in self._incompatible_ids)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2022-10-27T21:34:38,710     candidate = func()
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2022-10-27T21:34:38,710     self._link_candidate_cache[link] = LinkCandidate(
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 297, in __init__
2022-10-27T21:34:38,710     super().__init__(
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__
2022-10-27T21:34:38,710     self.dist = self._prepare()
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare
2022-10-27T21:34:38,710     dist = self._prepare_distribution()
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution
2022-10-27T21:34:38,710     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement
2022-10-27T21:34:38,710     return self._prepare_linked_requirement(req, parallel_builds)
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 577, in _prepare_linked_requirement
2022-10-27T21:34:38,710     dist = _get_prepared_distribution(
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2022-10-27T21:34:38,710     abstract_dist.prepare_distribution_metadata(
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2022-10-27T21:34:38,710     self.req.prepare_metadata()
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 541, in prepare_metadata
2022-10-27T21:34:38,710     self.metadata_directory = generate_metadata_legacy(
2022-10-27T21:34:38,710   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2022-10-27T21:34:38,710     raise MetadataGenerationFailed(package_details=details) from error
2022-10-27T21:34:38,710 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2022-10-27T21:34:38,721 Removed scipion-em-emantomo==3.0.3 from https://files.pythonhosted.org/packages/86/fb/3a152dc88faa08186c288176c5d4af84f4f9afcadfe220aa40e3e749a88a/scipion-em-emantomo-3.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-zw779fu9'
2022-10-27T21:34:38,721 Removed build tracker: '/tmp/pip-build-tracker-zw779fu9'