2022-10-28T15:50:00,054 Created temporary directory: /tmp/pip-ephem-wheel-cache-bl1v2y1u
2022-10-28T15:50:00,058 Created temporary directory: /tmp/pip-build-tracker-7aaa1rdr
2022-10-28T15:50:00,059 Initialized build tracking at /tmp/pip-build-tracker-7aaa1rdr
2022-10-28T15:50:00,059 Created build tracker: /tmp/pip-build-tracker-7aaa1rdr
2022-10-28T15:50:00,060 Entered build tracker: /tmp/pip-build-tracker-7aaa1rdr
2022-10-28T15:50:00,061 Created temporary directory: /tmp/pip-wheel-mbsqm7k4
2022-10-28T15:50:00,069 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-28T15:50:00,074 Created temporary directory: /tmp/pip-ephem-wheel-cache-mr9oslv_
2022-10-28T15:50:00,124 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-28T15:50:00,132 2 location(s) to search for versions of flair-brookslab:
2022-10-28T15:50:00,132 * https://pypi.org/simple/flair-brookslab/
2022-10-28T15:50:00,132 * https://www.piwheels.org/simple/flair-brookslab/
2022-10-28T15:50:00,133 Fetching project page and analyzing links: https://pypi.org/simple/flair-brookslab/
2022-10-28T15:50:00,134 Getting page https://pypi.org/simple/flair-brookslab/
2022-10-28T15:50:00,138 Found index url https://pypi.org/simple
2022-10-28T15:50:00,358 Fetched page https://pypi.org/simple/flair-brookslab/ as application/vnd.pypi.simple.v1+json
2022-10-28T15:50:00,367   Found link https://files.pythonhosted.org/packages/7b/b0/81e9bccbec5b1eb63764e1629d4f6e4173d4e66a5a7f9380943d5721524d/flair-brookslab-1.6.0.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.0
2022-10-28T15:50:00,367   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/9e/2f/b358fc9d63fd1a681dfdf061864a5c7024d691ccd13de2ecf96c5771e90b/flair_brookslab-1.6.0-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,369   Found link https://files.pythonhosted.org/packages/42/18/086b0e1cf3edfbc353025a02b0fb2aa146126e48a5853b364f2666d90be9/flair-brookslab-1.6.1.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.1
2022-10-28T15:50:00,370   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/d8/5b/98f7e961a43cd0be92151fd25d89a1284996cc472e64e4f72c7b3fe7c8fc/flair_brookslab-1.6.1-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,371   Found link https://files.pythonhosted.org/packages/20/33/7549a3646a139bb908105ac74ce959749e1325d5c2f76c9d337fdca944de/flair-brookslab-1.6.2.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.2
2022-10-28T15:50:00,372   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/82/51/d0cbb16809fc922533db0322bd274b3a551593217c928177c86c295e61f6/flair_brookslab-1.6.2-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,373   Found link https://files.pythonhosted.org/packages/c4/81/3be197c295e863ea64962052372735e595b25c944c07238da52650f5c702/flair-brookslab-1.6.3.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.3
2022-10-28T15:50:00,374   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/d9/a3/187bd95e235005d802bfd2ac7f7a0ea6b1ddff9bc2209083072e6af0cd53/flair_brookslab-1.6.3-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,375   Found link https://files.pythonhosted.org/packages/42/10/34e93785d76f92d9ed4b2516573dd1c74b04d746faeb757386ebbe645049/flair-brookslab-1.6.4.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.4
2022-10-28T15:50:00,375   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/bc/3d/558f724ada9f2f0b086ca98b5ca14c05829bbbccec27224b5c1ca7ddcb96/flair_brookslab-1.6.4-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,377   Found link https://files.pythonhosted.org/packages/4f/24/5b988c065cacb0e847fb5ce78fa4d9e4dc5b4690503f0c9a775833f87935/flair-brookslab-1.7.0.tar.gz (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.7.0
2022-10-28T15:50:00,377   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/b0/ea/b0ce91294e1ad8c55189b99223a99ab8fc75982920a69e8ee7e8dd1ab4ea/flair_brookslab-1.7.0-py3-none-any.whl (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,378 Fetching project page and analyzing links: https://www.piwheels.org/simple/flair-brookslab/
2022-10-28T15:50:00,379 Getting page https://www.piwheels.org/simple/flair-brookslab/
2022-10-28T15:50:00,381 Found index url https://www.piwheels.org/simple
2022-10-28T15:50:00,636 Fetched page https://www.piwheels.org/simple/flair-brookslab/ as text/html
2022-10-28T15:50:00,642   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.4-py3-none-any.whl#sha256=70c52a55889c0e314949b483a05b04eeacce9a30cd8819175f8089e4960e6244 (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,643   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.3-py3-none-any.whl#sha256=033bd98a939da5bca984cc83ee597e212bd4c7f5b45aa28b56da96a92dc8f5a9 (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,643   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.2-py3-none-any.whl#sha256=dd40880a5dbef604b4ce4da671e02ab6ec1fa287a6d16f3edba1afb16c489b1a (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,644   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.1-py3-none-any.whl#sha256=63b007d0dce4210fd98049ce9930ab7a1fc691598b4e4ab3b1a9342ae365c7ec (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,644   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.0-py3-none-any.whl#sha256=42ffc8ce342e04c7e8a51c1ec41186e9142440e459349cd7fd4a9b7b42098b70 (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-10-28T15:50:00,645 Skipping link: not a file: https://www.piwheels.org/simple/flair-brookslab/
2022-10-28T15:50:00,645 Skipping link: not a file: https://pypi.org/simple/flair-brookslab/
2022-10-28T15:50:00,683 Given no hashes to check 1 links for project 'flair-brookslab': discarding no candidates
2022-10-28T15:50:00,714 Collecting flair-brookslab==1.7.0
2022-10-28T15:50:00,718   Created temporary directory: /tmp/pip-unpack-kmgrume0
2022-10-28T15:50:01,090   Downloading flair-brookslab-1.7.0.tar.gz (89 kB)
2022-10-28T15:50:01,384   Added flair-brookslab==1.7.0 from https://files.pythonhosted.org/packages/4f/24/5b988c065cacb0e847fb5ce78fa4d9e4dc5b4690503f0c9a775833f87935/flair-brookslab-1.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-7aaa1rdr'
2022-10-28T15:50:01,391   Created temporary directory: /tmp/pip-build-env-0oii6a0u
2022-10-28T15:50:01,403   Installing build dependencies: started
2022-10-28T15:50:01,405   Running command pip subprocess to install build dependencies
2022-10-28T15:50:04,110   Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7)
2022-10-28T15:50:04,846   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-28T15:50:04,900   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-28T15:50:09,347   Collecting setuptools>=42
2022-10-28T15:50:09,607     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB)
2022-10-28T15:50:14,424   Installing collected packages: setuptools
2022-10-28T15:50:19,250   Successfully installed setuptools-65.5.0
2022-10-28T15:50:19,684   Installing build dependencies: finished with status 'done'
2022-10-28T15:50:19,695   Getting requirements to build wheel: started
2022-10-28T15:50:19,697   Running command Getting requirements to build wheel
2022-10-28T15:50:21,787   running egg_info
2022-10-28T15:50:21,801   writing src/flair_brookslab.egg-info/PKG-INFO
2022-10-28T15:50:21,807   writing dependency_links to src/flair_brookslab.egg-info/dependency_links.txt
2022-10-28T15:50:21,811   writing entry points to src/flair_brookslab.egg-info/entry_points.txt
2022-10-28T15:50:21,814   writing requirements to src/flair_brookslab.egg-info/requires.txt
2022-10-28T15:50:21,816   writing top-level names to src/flair_brookslab.egg-info/top_level.txt
2022-10-28T15:50:21,885   reading manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2022-10-28T15:50:21,891   adding license file 'LICENSE.txt'
2022-10-28T15:50:21,901   writing manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2022-10-28T15:50:22,102   Getting requirements to build wheel: finished with status 'done'
2022-10-28T15:50:22,127   Installing backend dependencies: started
2022-10-28T15:50:22,129   Running command pip subprocess to install backend dependencies
2022-10-28T15:50:24,788   Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7)
2022-10-28T15:50:25,529   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-28T15:50:25,583   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-28T15:50:29,185   Collecting wheel
2022-10-28T15:50:29,243     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-10-28T15:50:33,160   Installing collected packages: wheel
2022-10-28T15:50:33,432     Creating /tmp/pip-build-env-0oii6a0u/normal/bin
2022-10-28T15:50:33,437     changing mode of /tmp/pip-build-env-0oii6a0u/normal/bin/wheel to 755
2022-10-28T15:50:33,463   Successfully installed wheel-0.37.1
2022-10-28T15:50:33,851   Installing backend dependencies: finished with status 'done'
2022-10-28T15:50:33,856   Created temporary directory: /tmp/pip-modern-metadata-u0io3pjf
2022-10-28T15:50:33,862   Preparing metadata (pyproject.toml): started
2022-10-28T15:50:33,865   Running command Preparing metadata (pyproject.toml)
2022-10-28T15:50:35,756   running dist_info
2022-10-28T15:50:35,800   creating /tmp/pip-modern-metadata-u0io3pjf/flair_brookslab.egg-info
2022-10-28T15:50:35,809   writing /tmp/pip-modern-metadata-u0io3pjf/flair_brookslab.egg-info/PKG-INFO
2022-10-28T15:50:35,812   writing dependency_links to /tmp/pip-modern-metadata-u0io3pjf/flair_brookslab.egg-info/dependency_links.txt
2022-10-28T15:50:35,816   writing entry points to /tmp/pip-modern-metadata-u0io3pjf/flair_brookslab.egg-info/entry_points.txt
2022-10-28T15:50:35,819   writing requirements to /tmp/pip-modern-metadata-u0io3pjf/flair_brookslab.egg-info/requires.txt
2022-10-28T15:50:35,832   writing top-level names to /tmp/pip-modern-metadata-u0io3pjf/flair_brookslab.egg-info/top_level.txt
2022-10-28T15:50:35,834   writing manifest file '/tmp/pip-modern-metadata-u0io3pjf/flair_brookslab.egg-info/SOURCES.txt'
2022-10-28T15:50:35,907   reading manifest file '/tmp/pip-modern-metadata-u0io3pjf/flair_brookslab.egg-info/SOURCES.txt'
2022-10-28T15:50:35,914   adding license file 'LICENSE.txt'
2022-10-28T15:50:35,922   writing manifest file '/tmp/pip-modern-metadata-u0io3pjf/flair_brookslab.egg-info/SOURCES.txt'
2022-10-28T15:50:35,923   creating '/tmp/pip-modern-metadata-u0io3pjf/flair_brookslab-1.7.0.dist-info'
2022-10-28T15:50:36,074   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2022-10-28T15:50:36,291   Preparing metadata (pyproject.toml): finished with status 'done'
2022-10-28T15:50:36,307   Source in /tmp/pip-wheel-mbsqm7k4/flair-brookslab_a89de19eec3c4b968311f6af72d139b1 has version 1.7.0, which satisfies requirement flair-brookslab==1.7.0 from https://files.pythonhosted.org/packages/4f/24/5b988c065cacb0e847fb5ce78fa4d9e4dc5b4690503f0c9a775833f87935/flair-brookslab-1.7.0.tar.gz
2022-10-28T15:50:36,309   Removed flair-brookslab==1.7.0 from https://files.pythonhosted.org/packages/4f/24/5b988c065cacb0e847fb5ce78fa4d9e4dc5b4690503f0c9a775833f87935/flair-brookslab-1.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-7aaa1rdr'
2022-10-28T15:50:36,322 Created temporary directory: /tmp/pip-unpack-9rx54vyv
2022-10-28T15:50:36,324 Building wheels for collected packages: flair-brookslab
2022-10-28T15:50:36,332   Created temporary directory: /tmp/pip-wheel-_7qoub06
2022-10-28T15:50:36,333   Destination directory: /tmp/pip-wheel-_7qoub06
2022-10-28T15:50:36,338   Building wheel for flair-brookslab (pyproject.toml): started
2022-10-28T15:50:36,340   Running command Building wheel for flair-brookslab (pyproject.toml)
2022-10-28T15:50:38,204   running bdist_wheel
2022-10-28T15:50:38,273   running build
2022-10-28T15:50:38,273   running build_py
2022-10-28T15:50:38,295   creating build
2022-10-28T15:50:38,295   creating build/lib
2022-10-28T15:50:38,296   creating build/lib/flair
2022-10-28T15:50:38,298   copying src/flair/ssCorrect.py -> build/lib/flair
2022-10-28T15:50:38,303   copying src/flair/collapse_isoforms_precise.py -> build/lib/flair
2022-10-28T15:50:38,307   copying src/flair/__init__.py -> build/lib/flair
2022-10-28T15:50:38,310   copying src/flair/ssPrep.py -> build/lib/flair
2022-10-28T15:50:38,314   copying src/flair/identify_annotated_gene.py -> build/lib/flair
2022-10-28T15:50:38,317   copying src/flair/subset_unassigned_reads.py -> build/lib/flair
2022-10-28T15:50:38,320   copying src/flair/runDU.py -> build/lib/flair
2022-10-28T15:50:38,324   copying src/flair/consolidate_isoforms.py -> build/lib/flair
2022-10-28T15:50:38,327   copying src/flair/count_sam_transcripts.py -> build/lib/flair
2022-10-28T15:50:38,331   copying src/flair/pull_starts.py -> build/lib/flair
2022-10-28T15:50:38,334   copying src/flair/match_counts.py -> build/lib/flair
2022-10-28T15:50:38,337   copying src/flair/deFLAIR.py -> build/lib/flair
2022-10-28T15:50:38,341   copying src/flair/call_diffsplice_events.py -> build/lib/flair
2022-10-28T15:50:38,344   copying src/flair/runDS.py -> build/lib/flair
2022-10-28T15:50:38,348   copying src/flair/es_as_inc_excl_to_counts.py -> build/lib/flair
2022-10-28T15:50:38,351   copying src/flair/filter_isoforms_by_proportion_of_gene_expr.py -> build/lib/flair
2022-10-28T15:50:38,354   copying src/flair/select_from_bed.py -> build/lib/flair
2022-10-28T15:50:38,357   copying src/flair/get_phase_sets.py -> build/lib/flair
2022-10-28T15:50:38,360   copying src/flair/counts_to_tpm.py -> build/lib/flair
2022-10-28T15:50:38,363   copying src/flair/es_as.py -> build/lib/flair
2022-10-28T15:50:38,367   copying src/flair/filter_collapsed_isoforms.py -> build/lib/flair
2022-10-28T15:50:38,370   copying src/flair/bam2Bed12.py -> build/lib/flair
2022-10-28T15:50:38,373   copying src/flair/filter_collapsed_isoforms_from_annotation.py -> build/lib/flair
2022-10-28T15:50:38,377   copying src/flair/samJuncs.py -> build/lib/flair
2022-10-28T15:50:38,381   copying src/flair/runDE.py -> build/lib/flair
2022-10-28T15:50:38,384   copying src/flair/gtf_to_bed.py -> build/lib/flair
2022-10-28T15:50:38,389   copying src/flair/bed_to_sequence.py -> build/lib/flair
2022-10-28T15:50:38,392   copying src/flair/identify_gene_isoform.py -> build/lib/flair
2022-10-28T15:50:38,396   copying src/flair/flair.py -> build/lib/flair
2022-10-28T15:50:38,402   copying src/flair/bed_to_gtf.py -> build/lib/flair
2022-10-28T15:50:38,410   running build_scripts
2022-10-28T15:50:38,412   creating build/scripts-3.7
2022-10-28T15:50:38,414   copying and adjusting bin/junctions_from_sam -> build/scripts-3.7
2022-10-28T15:50:38,423   copying and adjusting bin/mark_intron_retention -> build/scripts-3.7
2022-10-28T15:50:38,426   copying and adjusting bin/mark_productivity -> build/scripts-3.7
2022-10-28T15:50:38,431   copying and adjusting bin/normalize_counts_matrix -> build/scripts-3.7
2022-10-28T15:50:38,434   copying and adjusting bin/bam2Bed12 -> build/scripts-3.7
2022-10-28T15:50:38,438   copying and adjusting bin/bed_to_psl -> build/scripts-3.7
2022-10-28T15:50:38,441   copying and adjusting bin/diff_iso_usage -> build/scripts-3.7
2022-10-28T15:50:38,445   copying and adjusting bin/diffsplice_fishers_exact -> build/scripts-3.7
2022-10-28T15:50:38,448   copying and adjusting bin/plot_isoform_usage -> build/scripts-3.7
2022-10-28T15:50:38,453   copying and adjusting bin/predictProductivity -> build/scripts-3.7
2022-10-28T15:50:38,458   copying and adjusting bin/psl_to_bed -> build/scripts-3.7
2022-10-28T15:50:38,461   copying and adjusting bin/sam_to_map -> build/scripts-3.7
2022-10-28T15:50:38,464   copying and adjusting bin/fasta_seq_lengths -> build/scripts-3.7
2022-10-28T15:50:38,467   changing mode of build/scripts-3.7/junctions_from_sam from 644 to 755
2022-10-28T15:50:38,468   changing mode of build/scripts-3.7/mark_intron_retention from 644 to 755
2022-10-28T15:50:38,474   changing mode of build/scripts-3.7/mark_productivity from 644 to 755
2022-10-28T15:50:38,475   changing mode of build/scripts-3.7/normalize_counts_matrix from 644 to 755
2022-10-28T15:50:38,476   changing mode of build/scripts-3.7/bam2Bed12 from 644 to 755
2022-10-28T15:50:38,477   changing mode of build/scripts-3.7/bed_to_psl from 644 to 755
2022-10-28T15:50:38,478   changing mode of build/scripts-3.7/diff_iso_usage from 644 to 755
2022-10-28T15:50:38,479   changing mode of build/scripts-3.7/diffsplice_fishers_exact from 644 to 755
2022-10-28T15:50:38,480   changing mode of build/scripts-3.7/plot_isoform_usage from 644 to 755
2022-10-28T15:50:38,481   changing mode of build/scripts-3.7/predictProductivity from 644 to 755
2022-10-28T15:50:38,482   changing mode of build/scripts-3.7/psl_to_bed from 644 to 755
2022-10-28T15:50:38,482   changing mode of build/scripts-3.7/sam_to_map from 644 to 755
2022-10-28T15:50:38,483   changing mode of build/scripts-3.7/fasta_seq_lengths from 644 to 755
2022-10-28T15:50:38,515   installing to build/bdist.linux-armv7l/wheel
2022-10-28T15:50:38,516   running install
2022-10-28T15:50:38,579   running install_lib
2022-10-28T15:50:38,594   creating build/bdist.linux-armv7l
2022-10-28T15:50:38,595   creating build/bdist.linux-armv7l/wheel
2022-10-28T15:50:38,600   creating build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,602   copying build/lib/flair/ssCorrect.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,608   copying build/lib/flair/collapse_isoforms_precise.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,614   copying build/lib/flair/__init__.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,617   copying build/lib/flair/ssPrep.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,622   copying build/lib/flair/identify_annotated_gene.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,626   copying build/lib/flair/subset_unassigned_reads.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,630   copying build/lib/flair/runDU.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,635   copying build/lib/flair/consolidate_isoforms.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,639   copying build/lib/flair/count_sam_transcripts.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,644   copying build/lib/flair/pull_starts.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,648   copying build/lib/flair/match_counts.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,652   copying build/lib/flair/deFLAIR.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,657   copying build/lib/flair/call_diffsplice_events.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,662   copying build/lib/flair/runDS.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,666   copying build/lib/flair/es_as_inc_excl_to_counts.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,670   copying build/lib/flair/filter_isoforms_by_proportion_of_gene_expr.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,673   copying build/lib/flair/select_from_bed.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,676   copying build/lib/flair/get_phase_sets.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,680   copying build/lib/flair/counts_to_tpm.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,684   copying build/lib/flair/es_as.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,687   copying build/lib/flair/filter_collapsed_isoforms.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,691   copying build/lib/flair/bam2Bed12.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,695   copying build/lib/flair/filter_collapsed_isoforms_from_annotation.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,700   copying build/lib/flair/samJuncs.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,703   copying build/lib/flair/runDE.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,708   copying build/lib/flair/gtf_to_bed.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,711   copying build/lib/flair/bed_to_sequence.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,716   copying build/lib/flair/identify_gene_isoform.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,720   copying build/lib/flair/flair.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,727   copying build/lib/flair/bed_to_gtf.py -> build/bdist.linux-armv7l/wheel/flair
2022-10-28T15:50:38,731   running install_egg_info
2022-10-28T15:50:38,785   running egg_info
2022-10-28T15:50:38,793   writing src/flair_brookslab.egg-info/PKG-INFO
2022-10-28T15:50:38,796   writing dependency_links to src/flair_brookslab.egg-info/dependency_links.txt
2022-10-28T15:50:38,800   writing entry points to src/flair_brookslab.egg-info/entry_points.txt
2022-10-28T15:50:38,802   writing requirements to src/flair_brookslab.egg-info/requires.txt
2022-10-28T15:50:38,804   writing top-level names to src/flair_brookslab.egg-info/top_level.txt
2022-10-28T15:50:38,824   reading manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2022-10-28T15:50:38,829   adding license file 'LICENSE.txt'
2022-10-28T15:50:38,839   writing manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2022-10-28T15:50:38,842   Copying src/flair_brookslab.egg-info to build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0-py3.7.egg-info
2022-10-28T15:50:38,864   running install_scripts
2022-10-28T15:50:38,976   creating build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data
2022-10-28T15:50:38,977   creating build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:38,979   copying build/scripts-3.7/psl_to_bed -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:38,982   copying build/scripts-3.7/fasta_seq_lengths -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:38,985   copying build/scripts-3.7/sam_to_map -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:38,988   copying build/scripts-3.7/plot_isoform_usage -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:38,992   copying build/scripts-3.7/normalize_counts_matrix -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:38,995   copying build/scripts-3.7/mark_intron_retention -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:38,999   copying build/scripts-3.7/diffsplice_fishers_exact -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:39,002   copying build/scripts-3.7/diff_iso_usage -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:39,005   copying build/scripts-3.7/mark_productivity -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:39,009   copying build/scripts-3.7/junctions_from_sam -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:39,014   copying build/scripts-3.7/bam2Bed12 -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:39,018   copying build/scripts-3.7/predictProductivity -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:39,022   copying build/scripts-3.7/bed_to_psl -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts
2022-10-28T15:50:39,024   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/psl_to_bed to 755
2022-10-28T15:50:39,025   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/fasta_seq_lengths to 755
2022-10-28T15:50:39,025   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/sam_to_map to 755
2022-10-28T15:50:39,025   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/plot_isoform_usage to 755
2022-10-28T15:50:39,026   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/normalize_counts_matrix to 755
2022-10-28T15:50:39,026   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/mark_intron_retention to 755
2022-10-28T15:50:39,027   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/diffsplice_fishers_exact to 755
2022-10-28T15:50:39,027   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/diff_iso_usage to 755
2022-10-28T15:50:39,028   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/mark_productivity to 755
2022-10-28T15:50:39,028   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/junctions_from_sam to 755
2022-10-28T15:50:39,029   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/bam2Bed12 to 755
2022-10-28T15:50:39,029   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/predictProductivity to 755
2022-10-28T15:50:39,029   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.data/scripts/bed_to_psl to 755
2022-10-28T15:50:39,083   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2022-10-28T15:50:39,090   creating build/bdist.linux-armv7l/wheel/flair_brookslab-1.7.0.dist-info/WHEEL
2022-10-28T15:50:39,094   creating '/tmp/pip-wheel-_7qoub06/tmpo2pooarj/flair_brookslab-1.7.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-10-28T15:50:39,100   adding 'flair/__init__.py'
2022-10-28T15:50:39,103   adding 'flair/bam2Bed12.py'
2022-10-28T15:50:39,106   adding 'flair/bed_to_gtf.py'
2022-10-28T15:50:39,110   adding 'flair/bed_to_sequence.py'
2022-10-28T15:50:39,113   adding 'flair/call_diffsplice_events.py'
2022-10-28T15:50:39,122   adding 'flair/collapse_isoforms_precise.py'
2022-10-28T15:50:39,124   adding 'flair/consolidate_isoforms.py'
2022-10-28T15:50:39,129   adding 'flair/count_sam_transcripts.py'
2022-10-28T15:50:39,132   adding 'flair/counts_to_tpm.py'
2022-10-28T15:50:39,136   adding 'flair/deFLAIR.py'
2022-10-28T15:50:39,139   adding 'flair/es_as.py'
2022-10-28T15:50:39,142   adding 'flair/es_as_inc_excl_to_counts.py'
2022-10-28T15:50:39,145   adding 'flair/filter_collapsed_isoforms.py'
2022-10-28T15:50:39,149   adding 'flair/filter_collapsed_isoforms_from_annotation.py'
2022-10-28T15:50:39,152   adding 'flair/filter_isoforms_by_proportion_of_gene_expr.py'
2022-10-28T15:50:39,166   adding 'flair/flair.py'
2022-10-28T15:50:39,170   adding 'flair/get_phase_sets.py'
2022-10-28T15:50:39,173   adding 'flair/gtf_to_bed.py'
2022-10-28T15:50:39,176   adding 'flair/identify_annotated_gene.py'
2022-10-28T15:50:39,180   adding 'flair/identify_gene_isoform.py'
2022-10-28T15:50:39,183   adding 'flair/match_counts.py'
2022-10-28T15:50:39,185   adding 'flair/pull_starts.py'
2022-10-28T15:50:39,188   adding 'flair/runDE.py'
2022-10-28T15:50:39,192   adding 'flair/runDS.py'
2022-10-28T15:50:39,196   adding 'flair/runDU.py'
2022-10-28T15:50:39,200   adding 'flair/samJuncs.py'
2022-10-28T15:50:39,202   adding 'flair/select_from_bed.py'
2022-10-28T15:50:39,207   adding 'flair/ssCorrect.py'
2022-10-28T15:50:39,212   adding 'flair/ssPrep.py'
2022-10-28T15:50:39,214   adding 'flair/subset_unassigned_reads.py'
2022-10-28T15:50:39,219   adding 'flair_brookslab-1.7.0.data/scripts/bam2Bed12'
2022-10-28T15:50:39,222   adding 'flair_brookslab-1.7.0.data/scripts/bed_to_psl'
2022-10-28T15:50:39,224   adding 'flair_brookslab-1.7.0.data/scripts/diff_iso_usage'
2022-10-28T15:50:39,227   adding 'flair_brookslab-1.7.0.data/scripts/diffsplice_fishers_exact'
2022-10-28T15:50:39,229   adding 'flair_brookslab-1.7.0.data/scripts/fasta_seq_lengths'
2022-10-28T15:50:39,237   adding 'flair_brookslab-1.7.0.data/scripts/junctions_from_sam'
2022-10-28T15:50:39,240   adding 'flair_brookslab-1.7.0.data/scripts/mark_intron_retention'
2022-10-28T15:50:39,243   adding 'flair_brookslab-1.7.0.data/scripts/mark_productivity'
2022-10-28T15:50:39,246   adding 'flair_brookslab-1.7.0.data/scripts/normalize_counts_matrix'
2022-10-28T15:50:39,251   adding 'flair_brookslab-1.7.0.data/scripts/plot_isoform_usage'
2022-10-28T15:50:39,255   adding 'flair_brookslab-1.7.0.data/scripts/predictProductivity'
2022-10-28T15:50:39,258   adding 'flair_brookslab-1.7.0.data/scripts/psl_to_bed'
2022-10-28T15:50:39,260   adding 'flair_brookslab-1.7.0.data/scripts/sam_to_map'
2022-10-28T15:50:39,264   adding 'flair_brookslab-1.7.0.dist-info/LICENSE.txt'
2022-10-28T15:50:39,267   adding 'flair_brookslab-1.7.0.dist-info/METADATA'
2022-10-28T15:50:39,268   adding 'flair_brookslab-1.7.0.dist-info/WHEEL'
2022-10-28T15:50:39,270   adding 'flair_brookslab-1.7.0.dist-info/entry_points.txt'
2022-10-28T15:50:39,271   adding 'flair_brookslab-1.7.0.dist-info/top_level.txt'
2022-10-28T15:50:39,274   adding 'flair_brookslab-1.7.0.dist-info/RECORD'
2022-10-28T15:50:39,281   removing build/bdist.linux-armv7l/wheel
2022-10-28T15:50:39,534   Building wheel for flair-brookslab (pyproject.toml): finished with status 'done'
2022-10-28T15:50:39,551   Created wheel for flair-brookslab: filename=flair_brookslab-1.7.0-py3-none-any.whl size=111380 sha256=6fef0081533686078cec1e8217d70a0b832ec37dc569bd282e3415ba719699c0
2022-10-28T15:50:39,553   Stored in directory: /tmp/pip-ephem-wheel-cache-mr9oslv_/wheels/56/ce/a4/e6a2d203e754efdd6eefd9e19e92cbf86b395d41502d687a18
2022-10-28T15:50:39,582 Successfully built flair-brookslab
2022-10-28T15:50:39,597 Removed build tracker: '/tmp/pip-build-tracker-7aaa1rdr'