2022-10-28T16:45:01,774 Created temporary directory: /tmp/pip-ephem-wheel-cache-m_mr3lwt 2022-10-28T16:45:01,779 Created temporary directory: /tmp/pip-build-tracker-kq4j7hd8 2022-10-28T16:45:01,780 Initialized build tracking at /tmp/pip-build-tracker-kq4j7hd8 2022-10-28T16:45:01,780 Created build tracker: /tmp/pip-build-tracker-kq4j7hd8 2022-10-28T16:45:01,780 Entered build tracker: /tmp/pip-build-tracker-kq4j7hd8 2022-10-28T16:45:01,782 Created temporary directory: /tmp/pip-wheel-08tnmy32 2022-10-28T16:45:01,790 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev1-py2.py3-none-any.whl#sha256=7ff286949cb2c87a462ef1360b4ff58a3d0fc953dfde646f2b23bc9438d63ada (from https://www.piwheels.org/simple/galaxy-tool-util/) 2022-10-28T16:45:02,353 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev0-py3-none-any.whl#sha256=f3257799e554be8d31f640710ed8672994323cbfda020a3648775c6d156fad4a (from https://www.piwheels.org/simple/galaxy-tool-util/) 2022-10-28T16:45:02,354 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-tool-util/ 2022-10-28T16:45:02,355 Skipping link: not a file: https://pypi.org/simple/galaxy-tool-util/ 2022-10-28T16:45:02,397 Given no hashes to check 1 links for project 'galaxy-tool-util': discarding no candidates 2022-10-28T16:45:02,427 Collecting galaxy-tool-util==22.1.4 2022-10-28T16:45:02,432 Created temporary directory: /tmp/pip-unpack-aas7eht2 2022-10-28T16:45:02,713 Downloading galaxy-tool-util-22.1.4.tar.gz (344 kB) 2022-10-28T16:45:03,640 Added galaxy-tool-util==22.1.4 from https://files.pythonhosted.org/packages/50/29/401a90a790b57ef7fac1c4056078a15485f0716b93922ca7f6d009fbe005/galaxy-tool-util-22.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-kq4j7hd8' 2022-10-28T16:45:03,642 Running setup.py (path:/tmp/pip-wheel-08tnmy32/galaxy-tool-util_f60a41c3f6534050a2fd47908d6a0520/setup.py) egg_info for package galaxy-tool-util 2022-10-28T16:45:03,644 Created temporary directory: /tmp/pip-pip-egg-info-mqjuvs_s 2022-10-28T16:45:03,644 Preparing metadata (setup.py): started 2022-10-28T16:45:03,646 Running command python setup.py egg_info 2022-10-28T16:45:11,757 running egg_info 2022-10-28T16:45:11,763 creating /tmp/pip-pip-egg-info-mqjuvs_s/galaxy_tool_util.egg-info 2022-10-28T16:45:11,812 writing /tmp/pip-pip-egg-info-mqjuvs_s/galaxy_tool_util.egg-info/PKG-INFO 2022-10-28T16:45:11,817 writing dependency_links to /tmp/pip-pip-egg-info-mqjuvs_s/galaxy_tool_util.egg-info/dependency_links.txt 2022-10-28T16:45:11,822 writing entry points to /tmp/pip-pip-egg-info-mqjuvs_s/galaxy_tool_util.egg-info/entry_points.txt 2022-10-28T16:45:11,824 writing requirements to /tmp/pip-pip-egg-info-mqjuvs_s/galaxy_tool_util.egg-info/requires.txt 2022-10-28T16:45:11,826 writing top-level names to /tmp/pip-pip-egg-info-mqjuvs_s/galaxy_tool_util.egg-info/top_level.txt 2022-10-28T16:45:11,829 writing manifest file '/tmp/pip-pip-egg-info-mqjuvs_s/galaxy_tool_util.egg-info/SOURCES.txt' 2022-10-28T16:45:12,037 reading manifest file '/tmp/pip-pip-egg-info-mqjuvs_s/galaxy_tool_util.egg-info/SOURCES.txt' 2022-10-28T16:45:12,040 reading manifest template 'MANIFEST.in' 2022-10-28T16:45:12,049 adding license file 'LICENSE' 2022-10-28T16:45:12,066 writing manifest file '/tmp/pip-pip-egg-info-mqjuvs_s/galaxy_tool_util.egg-info/SOURCES.txt' 2022-10-28T16:45:12,276 Preparing metadata (setup.py): finished with status 'done' 2022-10-28T16:45:12,291 Source in /tmp/pip-wheel-08tnmy32/galaxy-tool-util_f60a41c3f6534050a2fd47908d6a0520 has version 22.1.4, which satisfies requirement galaxy-tool-util==22.1.4 from https://files.pythonhosted.org/packages/50/29/401a90a790b57ef7fac1c4056078a15485f0716b93922ca7f6d009fbe005/galaxy-tool-util-22.1.4.tar.gz 2022-10-28T16:45:12,293 Removed galaxy-tool-util==22.1.4 from https://files.pythonhosted.org/packages/50/29/401a90a790b57ef7fac1c4056078a15485f0716b93922ca7f6d009fbe005/galaxy-tool-util-22.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-kq4j7hd8' 2022-10-28T16:45:12,304 Created temporary directory: /tmp/pip-unpack-3chl9gye 2022-10-28T16:45:12,305 Building wheels for collected packages: galaxy-tool-util 2022-10-28T16:45:12,315 Created temporary directory: /tmp/pip-wheel-_lbf1dyv 2022-10-28T16:45:12,315 Building wheel for galaxy-tool-util (setup.py): started 2022-10-28T16:45:12,317 Destination directory: /tmp/pip-wheel-_lbf1dyv 2022-10-28T16:45:12,318 Running command python setup.py bdist_wheel 2022-10-28T16:45:20,275 running bdist_wheel 2022-10-28T16:45:20,374 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-10-28T16:45:20,423 running build 2022-10-28T16:45:20,424 running build_py 2022-10-28T16:45:20,477 creating build 2022-10-28T16:45:20,478 creating build/lib 2022-10-28T16:45:20,479 creating build/lib/galaxy 2022-10-28T16:45:20,481 copying galaxy/__init__.py -> build/lib/galaxy 2022-10-28T16:45:20,484 copying galaxy/project_galaxy_tool_util.py -> build/lib/galaxy 2022-10-28T16:45:20,489 creating build/lib/galaxy/tool_util 2022-10-28T16:45:20,491 copying galaxy/tool_util/lint.py -> build/lib/galaxy/tool_util 2022-10-28T16:45:20,495 copying galaxy/tool_util/__init__.py -> build/lib/galaxy/tool_util 2022-10-28T16:45:20,498 copying galaxy/tool_util/fetcher.py -> build/lib/galaxy/tool_util 2022-10-28T16:45:20,501 copying galaxy/tool_util/edam_util.py -> build/lib/galaxy/tool_util 2022-10-28T16:45:20,505 copying galaxy/tool_util/output_checker.py -> build/lib/galaxy/tool_util 2022-10-28T16:45:20,509 copying galaxy/tool_util/loader.py -> build/lib/galaxy/tool_util 2022-10-28T16:45:20,512 copying galaxy/tool_util/loader_directory.py -> build/lib/galaxy/tool_util 2022-10-28T16:45:20,516 copying galaxy/tool_util/provided_metadata.py -> build/lib/galaxy/tool_util 2022-10-28T16:45:20,522 creating build/lib/galaxy/tool_util/biotools 2022-10-28T16:45:20,523 copying galaxy/tool_util/biotools/__init__.py -> build/lib/galaxy/tool_util/biotools 2022-10-28T16:45:20,527 copying galaxy/tool_util/biotools/interface.py -> build/lib/galaxy/tool_util/biotools 2022-10-28T16:45:20,530 copying galaxy/tool_util/biotools/source.py -> build/lib/galaxy/tool_util/biotools 2022-10-28T16:45:20,535 creating build/lib/galaxy/tool_util/client 2022-10-28T16:45:20,536 copying galaxy/tool_util/client/__init__.py -> build/lib/galaxy/tool_util/client 2022-10-28T16:45:20,539 copying galaxy/tool_util/client/staging.py -> build/lib/galaxy/tool_util/client 2022-10-28T16:45:20,546 creating build/lib/galaxy/tool_util/cwl 2022-10-28T16:45:20,548 copying galaxy/tool_util/cwl/util.py -> build/lib/galaxy/tool_util/cwl 2022-10-28T16:45:20,554 copying galaxy/tool_util/cwl/cwltool_deps.py -> build/lib/galaxy/tool_util/cwl 2022-10-28T16:45:20,557 copying galaxy/tool_util/cwl/parser.py -> build/lib/galaxy/tool_util/cwl 2022-10-28T16:45:20,565 copying galaxy/tool_util/cwl/__init__.py -> build/lib/galaxy/tool_util/cwl 2022-10-28T16:45:20,568 copying galaxy/tool_util/cwl/runnable.py -> build/lib/galaxy/tool_util/cwl 2022-10-28T16:45:20,571 copying galaxy/tool_util/cwl/schema.py -> build/lib/galaxy/tool_util/cwl 2022-10-28T16:45:20,575 copying galaxy/tool_util/cwl/runtime_actions.py -> build/lib/galaxy/tool_util/cwl 2022-10-28T16:45:20,579 copying galaxy/tool_util/cwl/representation.py -> build/lib/galaxy/tool_util/cwl 2022-10-28T16:45:20,586 creating build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,588 copying galaxy/tool_util/deps/dockerfiles.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,591 copying galaxy/tool_util/deps/__init__.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,596 copying galaxy/tool_util/deps/container_classes.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,601 copying galaxy/tool_util/deps/commands.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,604 copying galaxy/tool_util/deps/conda_util.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,609 copying galaxy/tool_util/deps/brew_exts.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,614 copying galaxy/tool_util/deps/docker_util.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,618 copying galaxy/tool_util/deps/containers.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,622 copying galaxy/tool_util/deps/installable.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,626 copying galaxy/tool_util/deps/views.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,630 copying galaxy/tool_util/deps/singularity_util.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,634 copying galaxy/tool_util/deps/conda_compat.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,637 copying galaxy/tool_util/deps/brew_util.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,640 copying galaxy/tool_util/deps/dependencies.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,644 copying galaxy/tool_util/deps/requirements.py -> build/lib/galaxy/tool_util/deps 2022-10-28T16:45:20,649 creating build/lib/galaxy/tool_util/deps/container_resolvers 2022-10-28T16:45:20,651 copying galaxy/tool_util/deps/container_resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2022-10-28T16:45:20,655 copying galaxy/tool_util/deps/container_resolvers/explicit.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2022-10-28T16:45:20,659 copying galaxy/tool_util/deps/container_resolvers/mulled.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2022-10-28T16:45:20,667 creating build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,668 copying galaxy/tool_util/deps/mulled/util.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,673 copying galaxy/tool_util/deps/mulled/mulled_build.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,678 copying galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,682 copying galaxy/tool_util/deps/mulled/__init__.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,684 copying galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,688 copying galaxy/tool_util/deps/mulled/get_tests.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,692 copying galaxy/tool_util/deps/mulled/_cli.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,696 copying galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,699 copying galaxy/tool_util/deps/mulled/mulled_hash.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,702 copying galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,705 copying galaxy/tool_util/deps/mulled/mulled_search.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,710 copying galaxy/tool_util/deps/mulled/mulled_list.py -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:20,716 creating build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,717 copying galaxy/tool_util/deps/resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,722 copying galaxy/tool_util/deps/resolvers/modules.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,726 copying galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,730 copying galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,733 copying galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,737 copying galaxy/tool_util/deps/resolvers/homebrew.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,740 copying galaxy/tool_util/deps/resolvers/conda.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,745 copying galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,749 copying galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,753 copying galaxy/tool_util/deps/resolvers/lmod.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:20,759 creating build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,761 copying galaxy/tool_util/linters/tests.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,765 copying galaxy/tool_util/linters/_util.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,768 copying galaxy/tool_util/linters/citations.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,771 copying galaxy/tool_util/linters/__init__.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,774 copying galaxy/tool_util/linters/stdio.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,778 copying galaxy/tool_util/linters/cwl.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,781 copying galaxy/tool_util/linters/outputs.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,785 copying galaxy/tool_util/linters/help.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,789 copying galaxy/tool_util/linters/xml_order.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,792 copying galaxy/tool_util/linters/general.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,795 copying galaxy/tool_util/linters/command.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,799 copying galaxy/tool_util/linters/inputs.py -> build/lib/galaxy/tool_util/linters 2022-10-28T16:45:20,805 creating build/lib/galaxy/tool_util/locations 2022-10-28T16:45:20,806 copying galaxy/tool_util/locations/__init__.py -> build/lib/galaxy/tool_util/locations 2022-10-28T16:45:20,810 copying galaxy/tool_util/locations/http.py -> build/lib/galaxy/tool_util/locations 2022-10-28T16:45:20,813 copying galaxy/tool_util/locations/file.py -> build/lib/galaxy/tool_util/locations 2022-10-28T16:45:20,816 copying galaxy/tool_util/locations/dockstore.py -> build/lib/galaxy/tool_util/locations 2022-10-28T16:45:20,822 creating build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,824 copying galaxy/tool_util/parser/util.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,828 copying galaxy/tool_util/parser/xml.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,834 copying galaxy/tool_util/parser/factory.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,839 copying galaxy/tool_util/parser/output_collection_def.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,843 copying galaxy/tool_util/parser/output_actions.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,848 copying galaxy/tool_util/parser/__init__.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,851 copying galaxy/tool_util/parser/stdio.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,855 copying galaxy/tool_util/parser/cwl.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,859 copying galaxy/tool_util/parser/yaml.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,863 copying galaxy/tool_util/parser/interface.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,868 copying galaxy/tool_util/parser/output_objects.py -> build/lib/galaxy/tool_util/parser 2022-10-28T16:45:20,875 creating build/lib/galaxy/tool_util/toolbox 2022-10-28T16:45:20,876 copying galaxy/tool_util/toolbox/parser.py -> build/lib/galaxy/tool_util/toolbox 2022-10-28T16:45:20,880 copying galaxy/tool_util/toolbox/__init__.py -> build/lib/galaxy/tool_util/toolbox 2022-10-28T16:45:20,883 copying galaxy/tool_util/toolbox/base.py -> build/lib/galaxy/tool_util/toolbox 2022-10-28T16:45:20,890 copying galaxy/tool_util/toolbox/tags.py -> build/lib/galaxy/tool_util/toolbox 2022-10-28T16:45:20,894 copying galaxy/tool_util/toolbox/watcher.py -> build/lib/galaxy/tool_util/toolbox 2022-10-28T16:45:20,898 copying galaxy/tool_util/toolbox/integrated_panel.py -> build/lib/galaxy/tool_util/toolbox 2022-10-28T16:45:20,902 copying galaxy/tool_util/toolbox/panel.py -> build/lib/galaxy/tool_util/toolbox 2022-10-28T16:45:20,907 creating build/lib/galaxy/tool_util/toolbox/filters 2022-10-28T16:45:20,908 copying galaxy/tool_util/toolbox/filters/__init__.py -> build/lib/galaxy/tool_util/toolbox/filters 2022-10-28T16:45:20,914 creating build/lib/galaxy/tool_util/toolbox/lineages 2022-10-28T16:45:20,916 copying galaxy/tool_util/toolbox/lineages/factory.py -> build/lib/galaxy/tool_util/toolbox/lineages 2022-10-28T16:45:20,919 copying galaxy/tool_util/toolbox/lineages/__init__.py -> build/lib/galaxy/tool_util/toolbox/lineages 2022-10-28T16:45:20,922 copying galaxy/tool_util/toolbox/lineages/interface.py -> build/lib/galaxy/tool_util/toolbox/lineages 2022-10-28T16:45:20,927 creating build/lib/galaxy/tool_util/toolbox/views 2022-10-28T16:45:20,929 copying galaxy/tool_util/toolbox/views/__init__.py -> build/lib/galaxy/tool_util/toolbox/views 2022-10-28T16:45:20,938 copying galaxy/tool_util/toolbox/views/interface.py -> build/lib/galaxy/tool_util/toolbox/views 2022-10-28T16:45:20,942 copying galaxy/tool_util/toolbox/views/definitions.py -> build/lib/galaxy/tool_util/toolbox/views 2022-10-28T16:45:20,945 copying galaxy/tool_util/toolbox/views/edam.py -> build/lib/galaxy/tool_util/toolbox/views 2022-10-28T16:45:20,949 copying galaxy/tool_util/toolbox/views/sources.py -> build/lib/galaxy/tool_util/toolbox/views 2022-10-28T16:45:20,952 copying galaxy/tool_util/toolbox/views/static.py -> build/lib/galaxy/tool_util/toolbox/views 2022-10-28T16:45:20,958 creating build/lib/galaxy/tool_util/unittest_utils 2022-10-28T16:45:20,959 copying galaxy/tool_util/unittest_utils/__init__.py -> build/lib/galaxy/tool_util/unittest_utils 2022-10-28T16:45:20,962 copying galaxy/tool_util/unittest_utils/sample_data.py -> build/lib/galaxy/tool_util/unittest_utils 2022-10-28T16:45:20,967 creating build/lib/galaxy/tool_util/verify 2022-10-28T16:45:20,968 copying galaxy/tool_util/verify/__init__.py -> build/lib/galaxy/tool_util/verify 2022-10-28T16:45:20,973 copying galaxy/tool_util/verify/wait.py -> build/lib/galaxy/tool_util/verify 2022-10-28T16:45:20,976 copying galaxy/tool_util/verify/test_data.py -> build/lib/galaxy/tool_util/verify 2022-10-28T16:45:20,980 copying galaxy/tool_util/verify/interactor.py -> build/lib/galaxy/tool_util/verify 2022-10-28T16:45:20,986 copying galaxy/tool_util/verify/script.py -> build/lib/galaxy/tool_util/verify 2022-10-28T16:45:20,993 creating build/lib/galaxy/tool_util/verify/asserts 2022-10-28T16:45:20,995 copying galaxy/tool_util/verify/asserts/archive.py -> build/lib/galaxy/tool_util/verify/asserts 2022-10-28T16:45:20,998 copying galaxy/tool_util/verify/asserts/xml.py -> build/lib/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,002 copying galaxy/tool_util/verify/asserts/_util.py -> build/lib/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,005 copying galaxy/tool_util/verify/asserts/__init__.py -> build/lib/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,009 copying galaxy/tool_util/verify/asserts/tabular.py -> build/lib/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,012 copying galaxy/tool_util/verify/asserts/size.py -> build/lib/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,015 copying galaxy/tool_util/verify/asserts/hdf5.py -> build/lib/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,019 copying galaxy/tool_util/verify/asserts/text.py -> build/lib/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,023 running egg_info 2022-10-28T16:45:21,148 writing galaxy_tool_util.egg-info/PKG-INFO 2022-10-28T16:45:21,151 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2022-10-28T16:45:21,156 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2022-10-28T16:45:21,158 writing requirements to galaxy_tool_util.egg-info/requires.txt 2022-10-28T16:45:21,160 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2022-10-28T16:45:21,252 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2022-10-28T16:45:21,280 reading manifest template 'MANIFEST.in' 2022-10-28T16:45:21,287 adding license file 'LICENSE' 2022-10-28T16:45:21,314 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2022-10-28T16:45:21,326 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'galaxy.tool_util.xsd' as data is deprecated, please list it in `packages`. 2022-10-28T16:45:21,326 !! 2022-10-28T16:45:21,327 ############################ 2022-10-28T16:45:21,327 # Package would be ignored # 2022-10-28T16:45:21,328 ############################ 2022-10-28T16:45:21,328 Python recognizes 'galaxy.tool_util.xsd' as an importable package, 2022-10-28T16:45:21,328 but it is not listed in the `packages` configuration of setuptools. 2022-10-28T16:45:21,329 'galaxy.tool_util.xsd' has been automatically added to the distribution only 2022-10-28T16:45:21,329 because it may contain data files, but this behavior is likely to change 2022-10-28T16:45:21,329 in future versions of setuptools (and therefore is considered deprecated). 2022-10-28T16:45:21,330 Please make sure that 'galaxy.tool_util.xsd' is included as a package by using 2022-10-28T16:45:21,330 the `packages` configuration field or the proper discovery methods 2022-10-28T16:45:21,330 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-28T16:45:21,331 instead of `find_packages(...)`/`find:`). 2022-10-28T16:45:21,331 You can read more about "package discovery" and "data files" on setuptools 2022-10-28T16:45:21,331 documentation page. 2022-10-28T16:45:21,332 !! 2022-10-28T16:45:21,333 check.warn(importable) 2022-10-28T16:45:21,339 copying galaxy/tool_util/deps/mulled/invfile.lua -> build/lib/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,343 copying galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/lib/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,347 creating build/lib/galaxy/tool_util/xsd 2022-10-28T16:45:21,348 copying galaxy/tool_util/xsd/galaxy.xsd -> build/lib/galaxy/tool_util/xsd 2022-10-28T16:45:21,368 copying galaxy/tool_util/xsd/LICENSE -> build/lib/galaxy/tool_util/xsd 2022-10-28T16:45:21,372 copying galaxy/tool_util/xsd/README.md -> build/lib/galaxy/tool_util/xsd 2022-10-28T16:45:21,376 copying galaxy/tool_util/xsd/galaxy.jxb -> build/lib/galaxy/tool_util/xsd 2022-10-28T16:45:21,382 copying galaxy/tool_util/toolbox/filters/examples.py.sample -> build/lib/galaxy/tool_util/toolbox/filters 2022-10-28T16:45:21,386 copying galaxy/tool_util/verify/test_config.sample.yml -> build/lib/galaxy/tool_util/verify 2022-10-28T16:45:21,476 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-10-28T16:45:21,477 setuptools.SetuptoolsDeprecationWarning, 2022-10-28T16:45:21,527 installing to build/bdist.linux-armv7l/wheel 2022-10-28T16:45:21,527 running install 2022-10-28T16:45:21,589 running install_lib 2022-10-28T16:45:21,645 creating build/bdist.linux-armv7l 2022-10-28T16:45:21,646 creating build/bdist.linux-armv7l/wheel 2022-10-28T16:45:21,649 creating build/bdist.linux-armv7l/wheel/galaxy 2022-10-28T16:45:21,651 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2022-10-28T16:45:21,654 copying build/lib/galaxy/project_galaxy_tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy 2022-10-28T16:45:21,659 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-10-28T16:45:21,661 copying build/lib/galaxy/tool_util/lint.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-10-28T16:45:21,666 copying build/lib/galaxy/tool_util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-10-28T16:45:21,670 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-10-28T16:45:21,672 copying build/lib/galaxy/tool_util/verify/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-10-28T16:45:21,677 copying build/lib/galaxy/tool_util/verify/test_config.sample.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-10-28T16:45:21,680 copying build/lib/galaxy/tool_util/verify/wait.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-10-28T16:45:21,684 copying build/lib/galaxy/tool_util/verify/test_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-10-28T16:45:21,689 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,690 copying build/lib/galaxy/tool_util/verify/asserts/archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,694 copying build/lib/galaxy/tool_util/verify/asserts/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,698 copying build/lib/galaxy/tool_util/verify/asserts/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,702 copying build/lib/galaxy/tool_util/verify/asserts/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,706 copying build/lib/galaxy/tool_util/verify/asserts/tabular.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,709 copying build/lib/galaxy/tool_util/verify/asserts/size.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,713 copying build/lib/galaxy/tool_util/verify/asserts/hdf5.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,716 copying build/lib/galaxy/tool_util/verify/asserts/text.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-10-28T16:45:21,720 copying build/lib/galaxy/tool_util/verify/interactor.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-10-28T16:45:21,729 copying build/lib/galaxy/tool_util/verify/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-10-28T16:45:21,735 copying build/lib/galaxy/tool_util/fetcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-10-28T16:45:21,739 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,742 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,743 copying build/lib/galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,747 copying build/lib/galaxy/tool_util/deps/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,751 copying build/lib/galaxy/tool_util/deps/resolvers/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,755 copying build/lib/galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,759 copying build/lib/galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,762 copying build/lib/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,766 copying build/lib/galaxy/tool_util/deps/resolvers/homebrew.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,769 copying build/lib/galaxy/tool_util/deps/resolvers/conda.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,774 copying build/lib/galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,777 copying build/lib/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,781 copying build/lib/galaxy/tool_util/deps/resolvers/lmod.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-10-28T16:45:21,786 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2022-10-28T16:45:21,787 copying build/lib/galaxy/tool_util/deps/container_resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2022-10-28T16:45:21,791 copying build/lib/galaxy/tool_util/deps/container_resolvers/explicit.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2022-10-28T16:45:21,795 copying build/lib/galaxy/tool_util/deps/container_resolvers/mulled.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2022-10-28T16:45:21,800 copying build/lib/galaxy/tool_util/deps/dockerfiles.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,803 copying build/lib/galaxy/tool_util/deps/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,808 copying build/lib/galaxy/tool_util/deps/container_classes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,812 copying build/lib/galaxy/tool_util/deps/commands.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,815 copying build/lib/galaxy/tool_util/deps/conda_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,820 copying build/lib/galaxy/tool_util/deps/brew_exts.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,824 copying build/lib/galaxy/tool_util/deps/docker_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,828 copying build/lib/galaxy/tool_util/deps/containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,832 copying build/lib/galaxy/tool_util/deps/installable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,835 copying build/lib/galaxy/tool_util/deps/views.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,840 copying build/lib/galaxy/tool_util/deps/singularity_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,843 copying build/lib/galaxy/tool_util/deps/conda_compat.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,847 copying build/lib/galaxy/tool_util/deps/brew_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,850 copying build/lib/galaxy/tool_util/deps/dependencies.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,856 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,857 copying build/lib/galaxy/tool_util/deps/mulled/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,862 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,867 copying build/lib/galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,871 copying build/lib/galaxy/tool_util/deps/mulled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,874 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,877 copying build/lib/galaxy/tool_util/deps/mulled/get_tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,881 copying build/lib/galaxy/tool_util/deps/mulled/_cli.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,885 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,888 copying build/lib/galaxy/tool_util/deps/mulled/mulled_hash.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,891 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,894 copying build/lib/galaxy/tool_util/deps/mulled/invfile.lua -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,897 copying build/lib/galaxy/tool_util/deps/mulled/mulled_search.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,902 copying build/lib/galaxy/tool_util/deps/mulled/mulled_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-10-28T16:45:21,906 copying build/lib/galaxy/tool_util/deps/requirements.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-10-28T16:45:21,911 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-10-28T16:45:21,912 copying build/lib/galaxy/tool_util/xsd/README.md -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-10-28T16:45:21,916 copying build/lib/galaxy/tool_util/xsd/galaxy.jxb -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-10-28T16:45:21,919 copying build/lib/galaxy/tool_util/xsd/galaxy.xsd -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-10-28T16:45:21,938 copying build/lib/galaxy/tool_util/xsd/LICENSE -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-10-28T16:45:21,941 copying build/lib/galaxy/tool_util/edam_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-10-28T16:45:21,945 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,947 copying build/lib/galaxy/tool_util/linters/tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,951 copying build/lib/galaxy/tool_util/linters/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,954 copying build/lib/galaxy/tool_util/linters/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,957 copying build/lib/galaxy/tool_util/linters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,960 copying build/lib/galaxy/tool_util/linters/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,964 copying build/lib/galaxy/tool_util/linters/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,967 copying build/lib/galaxy/tool_util/linters/outputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,970 copying build/lib/galaxy/tool_util/linters/help.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,974 copying build/lib/galaxy/tool_util/linters/xml_order.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,977 copying build/lib/galaxy/tool_util/linters/general.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,980 copying build/lib/galaxy/tool_util/linters/command.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,984 copying build/lib/galaxy/tool_util/linters/inputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-10-28T16:45:21,988 copying build/lib/galaxy/tool_util/output_checker.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-10-28T16:45:21,993 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2022-10-28T16:45:21,995 copying build/lib/galaxy/tool_util/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2022-10-28T16:45:21,998 copying build/lib/galaxy/tool_util/biotools/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2022-10-28T16:45:22,001 copying build/lib/galaxy/tool_util/biotools/source.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2022-10-28T16:45:22,006 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-10-28T16:45:22,007 copying build/lib/galaxy/tool_util/cwl/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-10-28T16:45:22,013 copying build/lib/galaxy/tool_util/cwl/cwltool_deps.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-10-28T16:45:22,016 copying build/lib/galaxy/tool_util/cwl/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-10-28T16:45:22,023 copying build/lib/galaxy/tool_util/cwl/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-10-28T16:45:22,026 copying build/lib/galaxy/tool_util/cwl/runnable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-10-28T16:45:22,029 copying build/lib/galaxy/tool_util/cwl/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-10-28T16:45:22,033 copying build/lib/galaxy/tool_util/cwl/runtime_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-10-28T16:45:22,037 copying build/lib/galaxy/tool_util/cwl/representation.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-10-28T16:45:22,042 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-10-28T16:45:22,044 copying build/lib/galaxy/tool_util/locations/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-10-28T16:45:22,047 copying build/lib/galaxy/tool_util/locations/http.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-10-28T16:45:22,050 copying build/lib/galaxy/tool_util/locations/file.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-10-28T16:45:22,053 copying build/lib/galaxy/tool_util/locations/dockstore.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-10-28T16:45:22,056 copying build/lib/galaxy/tool_util/loader.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-10-28T16:45:22,060 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-10-28T16:45:22,062 copying build/lib/galaxy/tool_util/toolbox/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-10-28T16:45:22,066 copying build/lib/galaxy/tool_util/toolbox/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-10-28T16:45:22,069 copying build/lib/galaxy/tool_util/toolbox/base.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-10-28T16:45:22,076 copying build/lib/galaxy/tool_util/toolbox/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-10-28T16:45:22,080 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2022-10-28T16:45:22,081 copying build/lib/galaxy/tool_util/toolbox/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2022-10-28T16:45:22,086 copying build/lib/galaxy/tool_util/toolbox/filters/examples.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2022-10-28T16:45:22,089 copying build/lib/galaxy/tool_util/toolbox/watcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-10-28T16:45:22,093 copying build/lib/galaxy/tool_util/toolbox/integrated_panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-10-28T16:45:22,097 copying build/lib/galaxy/tool_util/toolbox/panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-10-28T16:45:22,102 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-10-28T16:45:22,104 copying build/lib/galaxy/tool_util/toolbox/views/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-10-28T16:45:22,106 copying build/lib/galaxy/tool_util/toolbox/views/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-10-28T16:45:22,110 copying build/lib/galaxy/tool_util/toolbox/views/definitions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-10-28T16:45:22,113 copying build/lib/galaxy/tool_util/toolbox/views/edam.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-10-28T16:45:22,117 copying build/lib/galaxy/tool_util/toolbox/views/sources.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-10-28T16:45:22,120 copying build/lib/galaxy/tool_util/toolbox/views/static.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-10-28T16:45:22,125 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2022-10-28T16:45:22,126 copying build/lib/galaxy/tool_util/toolbox/lineages/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2022-10-28T16:45:22,129 copying build/lib/galaxy/tool_util/toolbox/lineages/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2022-10-28T16:45:22,132 copying build/lib/galaxy/tool_util/toolbox/lineages/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2022-10-28T16:45:22,136 copying build/lib/galaxy/tool_util/loader_directory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-10-28T16:45:22,140 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2022-10-28T16:45:22,142 copying build/lib/galaxy/tool_util/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2022-10-28T16:45:22,145 copying build/lib/galaxy/tool_util/unittest_utils/sample_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2022-10-28T16:45:22,148 copying build/lib/galaxy/tool_util/provided_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-10-28T16:45:22,153 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,155 copying build/lib/galaxy/tool_util/parser/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,158 copying build/lib/galaxy/tool_util/parser/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,164 copying build/lib/galaxy/tool_util/parser/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,167 copying build/lib/galaxy/tool_util/parser/output_collection_def.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,171 copying build/lib/galaxy/tool_util/parser/output_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,176 copying build/lib/galaxy/tool_util/parser/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,179 copying build/lib/galaxy/tool_util/parser/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,183 copying build/lib/galaxy/tool_util/parser/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,187 copying build/lib/galaxy/tool_util/parser/yaml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,191 copying build/lib/galaxy/tool_util/parser/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,197 copying build/lib/galaxy/tool_util/parser/output_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-10-28T16:45:22,203 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2022-10-28T16:45:22,205 copying build/lib/galaxy/tool_util/client/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2022-10-28T16:45:22,208 copying build/lib/galaxy/tool_util/client/staging.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2022-10-28T16:45:22,215 running install_egg_info 2022-10-28T16:45:22,275 Copying galaxy_tool_util.egg-info to build/bdist.linux-armv7l/wheel/galaxy_tool_util-22.1.4-py3.7.egg-info 2022-10-28T16:45:22,301 running install_scripts 2022-10-28T16:45:22,487 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-28T16:45:22,496 creating build/bdist.linux-armv7l/wheel/galaxy_tool_util-22.1.4.dist-info/WHEEL 2022-10-28T16:45:22,501 creating '/tmp/pip-wheel-_lbf1dyv/galaxy_tool_util-22.1.4-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-28T16:45:22,505 adding 'galaxy/__init__.py' 2022-10-28T16:45:22,507 adding 'galaxy/project_galaxy_tool_util.py' 2022-10-28T16:45:22,510 adding 'galaxy/tool_util/__init__.py' 2022-10-28T16:45:22,513 adding 'galaxy/tool_util/edam_util.py' 2022-10-28T16:45:22,515 adding 'galaxy/tool_util/fetcher.py' 2022-10-28T16:45:22,520 adding 'galaxy/tool_util/lint.py' 2022-10-28T16:45:22,522 adding 'galaxy/tool_util/loader.py' 2022-10-28T16:45:22,525 adding 'galaxy/tool_util/loader_directory.py' 2022-10-28T16:45:22,529 adding 'galaxy/tool_util/output_checker.py' 2022-10-28T16:45:22,533 adding 'galaxy/tool_util/provided_metadata.py' 2022-10-28T16:45:22,536 adding 'galaxy/tool_util/biotools/__init__.py' 2022-10-28T16:45:22,538 adding 'galaxy/tool_util/biotools/interface.py' 2022-10-28T16:45:22,541 adding 'galaxy/tool_util/biotools/source.py' 2022-10-28T16:45:22,544 adding 'galaxy/tool_util/client/__init__.py' 2022-10-28T16:45:22,548 adding 'galaxy/tool_util/client/staging.py' 2022-10-28T16:45:22,551 adding 'galaxy/tool_util/cwl/__init__.py' 2022-10-28T16:45:22,554 adding 'galaxy/tool_util/cwl/cwltool_deps.py' 2022-10-28T16:45:22,568 adding 'galaxy/tool_util/cwl/parser.py' 2022-10-28T16:45:22,575 adding 'galaxy/tool_util/cwl/representation.py' 2022-10-28T16:45:22,578 adding 'galaxy/tool_util/cwl/runnable.py' 2022-10-28T16:45:22,581 adding 'galaxy/tool_util/cwl/runtime_actions.py' 2022-10-28T16:45:22,584 adding 'galaxy/tool_util/cwl/schema.py' 2022-10-28T16:45:22,590 adding 'galaxy/tool_util/cwl/util.py' 2022-10-28T16:45:22,598 adding 'galaxy/tool_util/deps/__init__.py' 2022-10-28T16:45:22,604 adding 'galaxy/tool_util/deps/brew_exts.py' 2022-10-28T16:45:22,607 adding 'galaxy/tool_util/deps/brew_util.py' 2022-10-28T16:45:22,609 adding 'galaxy/tool_util/deps/commands.py' 2022-10-28T16:45:22,611 adding 'galaxy/tool_util/deps/conda_compat.py' 2022-10-28T16:45:22,618 adding 'galaxy/tool_util/deps/conda_util.py' 2022-10-28T16:45:22,623 adding 'galaxy/tool_util/deps/container_classes.py' 2022-10-28T16:45:22,628 adding 'galaxy/tool_util/deps/containers.py' 2022-10-28T16:45:22,631 adding 'galaxy/tool_util/deps/dependencies.py' 2022-10-28T16:45:22,635 adding 'galaxy/tool_util/deps/docker_util.py' 2022-10-28T16:45:22,637 adding 'galaxy/tool_util/deps/dockerfiles.py' 2022-10-28T16:45:22,639 adding 'galaxy/tool_util/deps/installable.py' 2022-10-28T16:45:22,643 adding 'galaxy/tool_util/deps/requirements.py' 2022-10-28T16:45:22,646 adding 'galaxy/tool_util/deps/singularity_util.py' 2022-10-28T16:45:22,650 adding 'galaxy/tool_util/deps/views.py' 2022-10-28T16:45:22,655 adding 'galaxy/tool_util/deps/container_resolvers/__init__.py' 2022-10-28T16:45:22,658 adding 'galaxy/tool_util/deps/container_resolvers/explicit.py' 2022-10-28T16:45:22,664 adding 'galaxy/tool_util/deps/container_resolvers/mulled.py' 2022-10-28T16:45:22,668 adding 'galaxy/tool_util/deps/mulled/__init__.py' 2022-10-28T16:45:22,670 adding 'galaxy/tool_util/deps/mulled/_cli.py' 2022-10-28T16:45:22,674 adding 'galaxy/tool_util/deps/mulled/get_tests.py' 2022-10-28T16:45:22,677 adding 'galaxy/tool_util/deps/mulled/invfile.lua' 2022-10-28T16:45:22,683 adding 'galaxy/tool_util/deps/mulled/mulled_build.py' 2022-10-28T16:45:22,686 adding 'galaxy/tool_util/deps/mulled/mulled_build_channel.py' 2022-10-28T16:45:22,689 adding 'galaxy/tool_util/deps/mulled/mulled_build_files.py' 2022-10-28T16:45:22,691 adding 'galaxy/tool_util/deps/mulled/mulled_build_tool.py' 2022-10-28T16:45:22,694 adding 'galaxy/tool_util/deps/mulled/mulled_hash.py' 2022-10-28T16:45:22,696 adding 'galaxy/tool_util/deps/mulled/mulled_list.py' 2022-10-28T16:45:22,701 adding 'galaxy/tool_util/deps/mulled/mulled_search.py' 2022-10-28T16:45:22,705 adding 'galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py' 2022-10-28T16:45:22,710 adding 'galaxy/tool_util/deps/mulled/util.py' 2022-10-28T16:45:22,715 adding 'galaxy/tool_util/deps/resolvers/__init__.py' 2022-10-28T16:45:22,719 adding 'galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py' 2022-10-28T16:45:22,724 adding 'galaxy/tool_util/deps/resolvers/conda.py' 2022-10-28T16:45:22,726 adding 'galaxy/tool_util/deps/resolvers/default_conda_mapping.yml' 2022-10-28T16:45:22,729 adding 'galaxy/tool_util/deps/resolvers/galaxy_packages.py' 2022-10-28T16:45:22,732 adding 'galaxy/tool_util/deps/resolvers/homebrew.py' 2022-10-28T16:45:22,735 adding 'galaxy/tool_util/deps/resolvers/lmod.py' 2022-10-28T16:45:22,739 adding 'galaxy/tool_util/deps/resolvers/modules.py' 2022-10-28T16:45:22,741 adding 'galaxy/tool_util/deps/resolvers/resolver_mixins.py' 2022-10-28T16:45:22,744 adding 'galaxy/tool_util/deps/resolvers/tool_shed_packages.py' 2022-10-28T16:45:22,747 adding 'galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py' 2022-10-28T16:45:22,751 adding 'galaxy/tool_util/linters/__init__.py' 2022-10-28T16:45:22,753 adding 'galaxy/tool_util/linters/_util.py' 2022-10-28T16:45:22,755 adding 'galaxy/tool_util/linters/citations.py' 2022-10-28T16:45:22,758 adding 'galaxy/tool_util/linters/command.py' 2022-10-28T16:45:22,760 adding 'galaxy/tool_util/linters/cwl.py' 2022-10-28T16:45:22,763 adding 'galaxy/tool_util/linters/general.py' 2022-10-28T16:45:22,765 adding 'galaxy/tool_util/linters/help.py' 2022-10-28T16:45:22,770 adding 'galaxy/tool_util/linters/inputs.py' 2022-10-28T16:45:22,773 adding 'galaxy/tool_util/linters/outputs.py' 2022-10-28T16:45:22,775 adding 'galaxy/tool_util/linters/stdio.py' 2022-10-28T16:45:22,778 adding 'galaxy/tool_util/linters/tests.py' 2022-10-28T16:45:22,781 adding 'galaxy/tool_util/linters/xml_order.py' 2022-10-28T16:45:22,784 adding 'galaxy/tool_util/locations/__init__.py' 2022-10-28T16:45:22,786 adding 'galaxy/tool_util/locations/dockstore.py' 2022-10-28T16:45:22,789 adding 'galaxy/tool_util/locations/file.py' 2022-10-28T16:45:22,791 adding 'galaxy/tool_util/locations/http.py' 2022-10-28T16:45:22,794 adding 'galaxy/tool_util/parser/__init__.py' 2022-10-28T16:45:22,797 adding 'galaxy/tool_util/parser/cwl.py' 2022-10-28T16:45:22,800 adding 'galaxy/tool_util/parser/factory.py' 2022-10-28T16:45:22,805 adding 'galaxy/tool_util/parser/interface.py' 2022-10-28T16:45:22,811 adding 'galaxy/tool_util/parser/output_actions.py' 2022-10-28T16:45:22,815 adding 'galaxy/tool_util/parser/output_collection_def.py' 2022-10-28T16:45:22,819 adding 'galaxy/tool_util/parser/output_objects.py' 2022-10-28T16:45:22,822 adding 'galaxy/tool_util/parser/stdio.py' 2022-10-28T16:45:22,824 adding 'galaxy/tool_util/parser/util.py' 2022-10-28T16:45:22,841 adding 'galaxy/tool_util/parser/xml.py' 2022-10-28T16:45:22,846 adding 'galaxy/tool_util/parser/yaml.py' 2022-10-28T16:45:22,849 adding 'galaxy/tool_util/toolbox/__init__.py' 2022-10-28T16:45:22,867 adding 'galaxy/tool_util/toolbox/base.py' 2022-10-28T16:45:22,872 adding 'galaxy/tool_util/toolbox/integrated_panel.py' 2022-10-28T16:45:22,875 adding 'galaxy/tool_util/toolbox/panel.py' 2022-10-28T16:45:22,878 adding 'galaxy/tool_util/toolbox/parser.py' 2022-10-28T16:45:22,880 adding 'galaxy/tool_util/toolbox/tags.py' 2022-10-28T16:45:22,884 adding 'galaxy/tool_util/toolbox/watcher.py' 2022-10-28T16:45:22,888 adding 'galaxy/tool_util/toolbox/filters/__init__.py' 2022-10-28T16:45:22,890 adding 'galaxy/tool_util/toolbox/filters/examples.py.sample' 2022-10-28T16:45:22,894 adding 'galaxy/tool_util/toolbox/lineages/__init__.py' 2022-10-28T16:45:22,896 adding 'galaxy/tool_util/toolbox/lineages/factory.py' 2022-10-28T16:45:22,899 adding 'galaxy/tool_util/toolbox/lineages/interface.py' 2022-10-28T16:45:22,902 adding 'galaxy/tool_util/toolbox/views/__init__.py' 2022-10-28T16:45:22,905 adding 'galaxy/tool_util/toolbox/views/definitions.py' 2022-10-28T16:45:22,908 adding 'galaxy/tool_util/toolbox/views/edam.py' 2022-10-28T16:45:22,910 adding 'galaxy/tool_util/toolbox/views/interface.py' 2022-10-28T16:45:22,913 adding 'galaxy/tool_util/toolbox/views/sources.py' 2022-10-28T16:45:22,916 adding 'galaxy/tool_util/toolbox/views/static.py' 2022-10-28T16:45:22,919 adding 'galaxy/tool_util/unittest_utils/__init__.py' 2022-10-28T16:45:22,921 adding 'galaxy/tool_util/unittest_utils/sample_data.py' 2022-10-28T16:45:22,928 adding 'galaxy/tool_util/verify/__init__.py' 2022-10-28T16:45:22,946 adding 'galaxy/tool_util/verify/interactor.py' 2022-10-28T16:45:22,954 adding 'galaxy/tool_util/verify/script.py' 2022-10-28T16:45:22,956 adding 'galaxy/tool_util/verify/test_config.sample.yml' 2022-10-28T16:45:22,959 adding 'galaxy/tool_util/verify/test_data.py' 2022-10-28T16:45:22,961 adding 'galaxy/tool_util/verify/wait.py' 2022-10-28T16:45:22,965 adding 'galaxy/tool_util/verify/asserts/__init__.py' 2022-10-28T16:45:22,968 adding 'galaxy/tool_util/verify/asserts/_util.py' 2022-10-28T16:45:22,970 adding 'galaxy/tool_util/verify/asserts/archive.py' 2022-10-28T16:45:22,973 adding 'galaxy/tool_util/verify/asserts/hdf5.py' 2022-10-28T16:45:22,975 adding 'galaxy/tool_util/verify/asserts/size.py' 2022-10-28T16:45:22,977 adding 'galaxy/tool_util/verify/asserts/tabular.py' 2022-10-28T16:45:22,980 adding 'galaxy/tool_util/verify/asserts/text.py' 2022-10-28T16:45:22,982 adding 'galaxy/tool_util/verify/asserts/xml.py' 2022-10-28T16:45:22,986 adding 'galaxy/tool_util/xsd/LICENSE' 2022-10-28T16:45:22,988 adding 'galaxy/tool_util/xsd/README.md' 2022-10-28T16:45:22,990 adding 'galaxy/tool_util/xsd/galaxy.jxb' 2022-10-28T16:45:23,073 adding 'galaxy/tool_util/xsd/galaxy.xsd' 2022-10-28T16:45:23,086 adding 'galaxy_tool_util-22.1.4.dist-info/LICENSE' 2022-10-28T16:45:23,089 adding 'galaxy_tool_util-22.1.4.dist-info/METADATA' 2022-10-28T16:45:23,091 adding 'galaxy_tool_util-22.1.4.dist-info/WHEEL' 2022-10-28T16:45:23,092 adding 'galaxy_tool_util-22.1.4.dist-info/entry_points.txt' 2022-10-28T16:45:23,094 adding 'galaxy_tool_util-22.1.4.dist-info/top_level.txt' 2022-10-28T16:45:23,098 adding 'galaxy_tool_util-22.1.4.dist-info/RECORD' 2022-10-28T16:45:23,116 removing build/bdist.linux-armv7l/wheel 2022-10-28T16:45:23,423 Building wheel for galaxy-tool-util (setup.py): finished with status 'done' 2022-10-28T16:45:23,440 Created wheel for galaxy-tool-util: filename=galaxy_tool_util-22.1.4-py2.py3-none-any.whl size=344603 sha256=b90ea2c90c0b73b9e25a07cbcc5d43eca725d97d3f50b028e7fd54d8b70d7e12 2022-10-28T16:45:23,442 Stored in directory: /tmp/pip-ephem-wheel-cache-1jowyo2r/wheels/c7/e1/64/812ae02386e9afae606a696d13b28d4b03bddfd1299ee455ef 2022-10-28T16:45:23,479 Successfully built galaxy-tool-util 2022-10-28T16:45:23,511 Removed build tracker: '/tmp/pip-build-tracker-kq4j7hd8'