2022-10-28T16:56:53,060 Created temporary directory: /tmp/pip-ephem-wheel-cache-pk3cqrui
2022-10-28T16:56:53,062 Created temporary directory: /tmp/pip-build-tracker-9i82_9ee
2022-10-28T16:56:53,062 Initialized build tracking at /tmp/pip-build-tracker-9i82_9ee
2022-10-28T16:56:53,062 Created build tracker: /tmp/pip-build-tracker-9i82_9ee
2022-10-28T16:56:53,063 Entered build tracker: /tmp/pip-build-tracker-9i82_9ee
2022-10-28T16:56:53,063 Created temporary directory: /tmp/pip-wheel-kak54ty4
2022-10-28T16:56:53,066 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-28T16:56:53,069 Created temporary directory: /tmp/pip-ephem-wheel-cache-5cw1vovi
2022-10-28T16:56:53,092 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-28T16:56:53,095 2 location(s) to search for versions of pybiotk:
2022-10-28T16:56:53,095 * https://pypi.org/simple/pybiotk/
2022-10-28T16:56:53,095 * https://www.piwheels.org/simple/pybiotk/
2022-10-28T16:56:53,096 Fetching project page and analyzing links: https://pypi.org/simple/pybiotk/
2022-10-28T16:56:53,096 Getting page https://pypi.org/simple/pybiotk/
2022-10-28T16:56:53,098 Found index url https://pypi.org/simple
2022-10-28T16:56:53,150 Fetched page https://pypi.org/simple/pybiotk/ as application/vnd.pypi.simple.v1+json
2022-10-28T16:56:53,151   Found link https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.3
2022-10-28T16:56:53,152   Found link https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.4
2022-10-28T16:56:53,152   Found link https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.6
2022-10-28T16:56:53,152   Found link https://files.pythonhosted.org/packages/be/b5/ff3128b3a5181f7169f2fb8072ae82e4589c45e3c08c3964fc77b897a8cf/pybiotk-1.0.7.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.7
2022-10-28T16:56:53,152   Found link https://files.pythonhosted.org/packages/b7/60/f27ad0c199d09158de9f172415057312c69a824f3589e43787ea24925448/pybiotk-1.0.8.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.8
2022-10-28T16:56:53,153   Found link https://files.pythonhosted.org/packages/fb/74/d26be594d8fc95a6bf87a98c26341ec248f2bb6fe50fa7a78419c8a152d9/pybiotk-1.0.9.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.9
2022-10-28T16:56:53,153 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybiotk/
2022-10-28T16:56:53,153 Getting page https://www.piwheels.org/simple/pybiotk/
2022-10-28T16:56:53,154 Found index url https://www.piwheels.org/simple
2022-10-28T16:56:53,421 Fetched page https://www.piwheels.org/simple/pybiotk/ as text/html
2022-10-28T16:56:53,427   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp37-cp37m-linux_armv7l.whl#sha256=be124f7f80c27462ab252101b8748b4825aa2718172dd154380e23d7f2dcb954 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,428   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp37-cp37m-linux_armv6l.whl#sha256=be124f7f80c27462ab252101b8748b4825aa2718172dd154380e23d7f2dcb954 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,428   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=16889f2c9c5397540b9fa3bfa0396accff8dce33315140eb793f9bedb013c4ad (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,428   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp39-cp39-linux_armv6l.whl#sha256=16889f2c9c5397540b9fa3bfa0396accff8dce33315140eb793f9bedb013c4ad (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,428   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp37-cp37m-linux_armv7l.whl#sha256=ad3883b734204bdb7f690aa520d991f61667159590a41a71870dda41d888085d (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,428   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp37-cp37m-linux_armv6l.whl#sha256=ad3883b734204bdb7f690aa520d991f61667159590a41a71870dda41d888085d (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,429   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=58efd8944f51edd73913001082ed31919eaa2a61cd84bab7f9b3d6dc4bb5147c (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,429   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=58efd8944f51edd73913001082ed31919eaa2a61cd84bab7f9b3d6dc4bb5147c (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,429   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv7l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,429   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv6l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,430   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,430   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,430   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv7l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,430   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv6l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,430   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,431   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,431   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,431   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,431   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,431   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,432   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,432   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-10-28T16:56:53,432 Skipping link: not a file: https://www.piwheels.org/simple/pybiotk/
2022-10-28T16:56:53,432 Skipping link: not a file: https://pypi.org/simple/pybiotk/
2022-10-28T16:56:53,451 Given no hashes to check 1 links for project 'pybiotk': discarding no candidates
2022-10-28T16:56:53,468 Collecting pybiotk==1.0.9
2022-10-28T16:56:53,471   Created temporary directory: /tmp/pip-unpack-y64ka90s
2022-10-28T16:56:53,518   Downloading pybiotk-1.0.9.tar.gz (93 kB)
2022-10-28T16:56:53,794   Added pybiotk==1.0.9 from https://files.pythonhosted.org/packages/fb/74/d26be594d8fc95a6bf87a98c26341ec248f2bb6fe50fa7a78419c8a152d9/pybiotk-1.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-9i82_9ee'
2022-10-28T16:56:53,801   Created temporary directory: /tmp/pip-build-env-qcro86xt
2022-10-28T16:56:53,809   Installing build dependencies: started
2022-10-28T16:56:53,810   Running command pip subprocess to install build dependencies
2022-10-28T16:56:55,248   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-10-28T16:56:55,657   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-28T16:56:55,683   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-28T16:56:57,309   Collecting setuptools>=46.1.0
2022-10-28T16:56:57,424     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB)
2022-10-28T16:56:57,784   Collecting setuptools_scm[toml]>=5
2022-10-28T16:56:57,835     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB)
2022-10-28T16:56:58,046   Collecting wheel
2022-10-28T16:56:58,066     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-10-28T16:56:59,373   Collecting Cython>=0.29.30
2022-10-28T16:56:59,869     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-10-28T16:57:00,160   Collecting typing-extensions
2022-10-28T16:57:00,177     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.4.0-py3-none-any.whl (26 kB)
2022-10-28T16:57:00,344   Collecting packaging>=20.0
2022-10-28T16:57:00,361     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-10-28T16:57:00,477   Collecting tomli>=1.0.0
2022-10-28T16:57:00,498     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-10-28T16:57:01,123   Collecting pyparsing!=3.0.5,>=2.0.2
2022-10-28T16:57:01,146     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-10-28T16:57:03,148   Installing collected packages: wheel, typing-extensions, tomli, setuptools, pyparsing, Cython, packaging, setuptools_scm
2022-10-28T16:57:03,304     Creating /tmp/pip-build-env-qcro86xt/overlay/bin
2022-10-28T16:57:03,307     changing mode of /tmp/pip-build-env-qcro86xt/overlay/bin/wheel to 755
2022-10-28T16:57:09,111     changing mode of /tmp/pip-build-env-qcro86xt/overlay/bin/cygdb to 755
2022-10-28T16:57:09,113     changing mode of /tmp/pip-build-env-qcro86xt/overlay/bin/cython to 755
2022-10-28T16:57:09,116     changing mode of /tmp/pip-build-env-qcro86xt/overlay/bin/cythonize to 755
2022-10-28T16:57:09,478   Successfully installed Cython-0.29.32 packaging-21.3 pyparsing-3.0.9 setuptools-65.5.0 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.4.0 wheel-0.37.1
2022-10-28T16:57:09,838   Installing build dependencies: finished with status 'done'
2022-10-28T16:57:09,847   Getting requirements to build wheel: started
2022-10-28T16:57:09,848   Running command Getting requirements to build wheel
2022-10-28T16:57:12,671   Compiling src/bx/bitset.pyx because it changed.
2022-10-28T16:57:12,672   Compiling src/bx/cluster.pyx because it changed.
2022-10-28T16:57:12,672   Compiling src/bx/intersection.pyx because it changed.
2022-10-28T16:57:12,672   [1/3] Cythonizing src/bx/bitset.pyx
2022-10-28T16:57:12,672   [2/3] Cythonizing src/bx/cluster.pyx
2022-10-28T16:57:12,672   [3/3] Cythonizing src/bx/intersection.pyx
2022-10-28T16:57:12,994   running egg_info
2022-10-28T16:57:13,002   writing src/pybiotk.egg-info/PKG-INFO
2022-10-28T16:57:13,004   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-10-28T16:57:13,007   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-10-28T16:57:13,009   writing requirements to src/pybiotk.egg-info/requires.txt
2022-10-28T16:57:13,010   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-10-28T16:57:13,081   listing git files failed - pretending there aren't any
2022-10-28T16:57:13,093   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-10-28T16:57:13,100   adding license file 'LICENSE.txt'
2022-10-28T16:57:13,107   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-10-28T16:57:13,350   Getting requirements to build wheel: finished with status 'done'
2022-10-28T16:57:13,363   Created temporary directory: /tmp/pip-modern-metadata-tg5nxjrv
2022-10-28T16:57:13,366   Preparing metadata (pyproject.toml): started
2022-10-28T16:57:13,367   Running command Preparing metadata (pyproject.toml)
2022-10-28T16:57:15,057   running dist_info
2022-10-28T16:57:15,079   creating /tmp/pip-modern-metadata-tg5nxjrv/pybiotk.egg-info
2022-10-28T16:57:15,086   writing /tmp/pip-modern-metadata-tg5nxjrv/pybiotk.egg-info/PKG-INFO
2022-10-28T16:57:15,089   writing dependency_links to /tmp/pip-modern-metadata-tg5nxjrv/pybiotk.egg-info/dependency_links.txt
2022-10-28T16:57:15,093   writing entry points to /tmp/pip-modern-metadata-tg5nxjrv/pybiotk.egg-info/entry_points.txt
2022-10-28T16:57:15,095   writing requirements to /tmp/pip-modern-metadata-tg5nxjrv/pybiotk.egg-info/requires.txt
2022-10-28T16:57:15,096   writing top-level names to /tmp/pip-modern-metadata-tg5nxjrv/pybiotk.egg-info/top_level.txt
2022-10-28T16:57:15,097   writing manifest file '/tmp/pip-modern-metadata-tg5nxjrv/pybiotk.egg-info/SOURCES.txt'
2022-10-28T16:57:15,163   listing git files failed - pretending there aren't any
2022-10-28T16:57:15,173   reading manifest file '/tmp/pip-modern-metadata-tg5nxjrv/pybiotk.egg-info/SOURCES.txt'
2022-10-28T16:57:15,178   adding license file 'LICENSE.txt'
2022-10-28T16:57:15,183   writing manifest file '/tmp/pip-modern-metadata-tg5nxjrv/pybiotk.egg-info/SOURCES.txt'
2022-10-28T16:57:15,184   creating '/tmp/pip-modern-metadata-tg5nxjrv/pybiotk-1.0.9.dist-info'
2022-10-28T16:57:15,272   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-10-28T16:57:15,467   Preparing metadata (pyproject.toml): finished with status 'done'
2022-10-28T16:57:15,475   Source in /tmp/pip-wheel-kak54ty4/pybiotk_e1080adef56c4fc88b7cb2a5f34527ce has version 1.0.9, which satisfies requirement pybiotk==1.0.9 from https://files.pythonhosted.org/packages/fb/74/d26be594d8fc95a6bf87a98c26341ec248f2bb6fe50fa7a78419c8a152d9/pybiotk-1.0.9.tar.gz
2022-10-28T16:57:15,476   Removed pybiotk==1.0.9 from https://files.pythonhosted.org/packages/fb/74/d26be594d8fc95a6bf87a98c26341ec248f2bb6fe50fa7a78419c8a152d9/pybiotk-1.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-9i82_9ee'
2022-10-28T16:57:15,480 Created temporary directory: /tmp/pip-unpack-b0c5_g1x
2022-10-28T16:57:15,481 Building wheels for collected packages: pybiotk
2022-10-28T16:57:15,486   Created temporary directory: /tmp/pip-wheel-d2hsjbcg
2022-10-28T16:57:15,486   Destination directory: /tmp/pip-wheel-d2hsjbcg
2022-10-28T16:57:15,489   Building wheel for pybiotk (pyproject.toml): started
2022-10-28T16:57:15,490   Running command Building wheel for pybiotk (pyproject.toml)
2022-10-28T16:57:17,167   running bdist_wheel
2022-10-28T16:57:17,194   running build
2022-10-28T16:57:17,194   running build_py
2022-10-28T16:57:17,203   creating build/lib.linux-armv7l-cpython-39
2022-10-28T16:57:17,203   creating build/lib.linux-armv7l-cpython-39/pybiotk
2022-10-28T16:57:17,205   copying src/pybiotk/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk
2022-10-28T16:57:17,207   creating build/lib.linux-armv7l-cpython-39/stream
2022-10-28T16:57:17,207   copying src/stream/stream.py -> build/lib.linux-armv7l-cpython-39/stream
2022-10-28T16:57:17,210   copying src/stream/__init__.py -> build/lib.linux-armv7l-cpython-39/stream
2022-10-28T16:57:17,211   copying src/stream/pipe.py -> build/lib.linux-armv7l-cpython-39/stream
2022-10-28T16:57:17,214   creating build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-10-28T16:57:17,215   copying src/pybiotk/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-10-28T16:57:17,218   creating build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,219   copying src/pybiotk/utils/subseq_analysis.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,221   copying src/pybiotk/utils/normalize.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,223   copying src/pybiotk/utils/pyanno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,225   copying src/pybiotk/utils/fasta_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,227   copying src/pybiotk/utils/merge_row.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,229   copying src/pybiotk/utils/genomefetcher.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,231   copying src/pybiotk/utils/read_tables.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,233   copying src/pybiotk/utils/merge_subseq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,235   copying src/pybiotk/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,236   copying src/pybiotk/utils/reverse_fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,238   copying src/pybiotk/utils/utils.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,240   copying src/pybiotk/utils/gtf_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,242   copying src/pybiotk/utils/seq_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,244   copying src/pybiotk/utils/fastq_join.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,246   copying src/pybiotk/utils/fastx_rename.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,248   copying src/pybiotk/utils/summary_log.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,250   copying src/pybiotk/utils/reference_count.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,252   copying src/pybiotk/utils/fragment_size.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,254   copying src/pybiotk/utils/rmats_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,255   copying src/pybiotk/utils/bam_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,257   copying src/pybiotk/utils/fastq_uniq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-10-28T16:57:17,260   creating build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-10-28T16:57:17,261   copying src/pybiotk/annodb/anno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-10-28T16:57:17,263   copying src/pybiotk/annodb/merged_transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-10-28T16:57:17,265   copying src/pybiotk/annodb/transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-10-28T16:57:17,267   copying src/pybiotk/annodb/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-10-28T16:57:17,269   copying src/pybiotk/annodb/gene.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-10-28T16:57:17,272   creating build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-10-28T16:57:17,272   copying src/pybiotk/intervals/merge_intervals.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-10-28T16:57:17,274   copying src/pybiotk/intervals/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-10-28T16:57:17,276   copying src/pybiotk/intervals/merge_bed3.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-10-28T16:57:17,277   copying src/pybiotk/intervals/grange.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-10-28T16:57:17,293   creating build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-10-28T16:57:17,293   copying src/pybiotk/convert/gtf2bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-10-28T16:57:17,296   copying src/pybiotk/convert/bed2bedgraph.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-10-28T16:57:17,298   copying src/pybiotk/convert/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-10-28T16:57:17,300   copying src/pybiotk/convert/bam2fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-10-28T16:57:17,302   copying src/pybiotk/convert/bampe_order_by_name.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-10-28T16:57:17,304   copying src/pybiotk/convert/fq2fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-10-28T16:57:17,307   creating build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-10-28T16:57:17,308   copying src/pybiotk/io/fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-10-28T16:57:17,311   copying src/pybiotk/io/bam.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-10-28T16:57:17,314   copying src/pybiotk/io/gtf.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-10-28T16:57:17,317   copying src/pybiotk/io/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-10-28T16:57:17,319   copying src/pybiotk/io/fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-10-28T16:57:17,322   copying src/pybiotk/io/bw.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-10-28T16:57:17,324   copying src/pybiotk/io/bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-10-28T16:57:17,326   running egg_info
2022-10-28T16:57:17,352   writing src/pybiotk.egg-info/PKG-INFO
2022-10-28T16:57:17,354   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-10-28T16:57:17,357   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-10-28T16:57:17,358   writing requirements to src/pybiotk.egg-info/requires.txt
2022-10-28T16:57:17,359   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-10-28T16:57:17,397   listing git files failed - pretending there aren't any
2022-10-28T16:57:17,408   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-10-28T16:57:17,412   adding license file 'LICENSE.txt'
2022-10-28T16:57:17,419   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-10-28T16:57:17,425   copying src/pybiotk/data/hg38.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-10-28T16:57:17,427   copying src/pybiotk/data/mm10.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-10-28T16:57:17,435   running build_ext
2022-10-28T16:57:17,441   building 'pybiotk.bx.bitset' extension
2022-10-28T16:57:17,441   creating build/temp.linux-armv7l-cpython-39
2022-10-28T16:57:17,442   creating build/temp.linux-armv7l-cpython-39/build
2022-10-28T16:57:17,442   creating build/temp.linux-armv7l-cpython-39/build/src
2022-10-28T16:57:17,443   creating build/temp.linux-armv7l-cpython-39/build/src/bx
2022-10-28T16:57:17,444   creating build/temp.linux-armv7l-cpython-39/src
2022-10-28T16:57:17,444   creating build/temp.linux-armv7l-cpython-39/src/bx
2022-10-28T16:57:17,445   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/bitset.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o
2022-10-28T16:57:23,000   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/binBits.c -o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o
2022-10-28T16:57:23,405   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/bits.c -o build/temp.linux-armv7l-cpython-39/src/bx/bits.o
2022-10-28T16:57:23,824   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/common.c -o build/temp.linux-armv7l-cpython-39/src/bx/common.o
2022-10-28T16:57:24,024   creating build/lib.linux-armv7l-cpython-39/pybiotk/bx
2022-10-28T16:57:24,024   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o build/temp.linux-armv7l-cpython-39/src/bx/bits.o build/temp.linux-armv7l-cpython-39/src/bx/common.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so
2022-10-28T16:57:24,172   building 'pybiotk.bx.cluster' extension
2022-10-28T16:57:24,172   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o
2022-10-28T16:57:26,234   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o
2022-10-28T16:57:26,725   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so
2022-10-28T16:57:26,845   building 'pybiotk.bx.intersection' extension
2022-10-28T16:57:26,846   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/src/bx/intersection.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o
2022-10-28T16:57:35,760   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so
2022-10-28T16:57:35,898   running build_scripts
2022-10-28T16:57:35,899   creating build/scripts-3.9
2022-10-28T16:57:35,901   copying rscripts/plot_FRiPs.R -> build/scripts-3.9
2022-10-28T16:57:35,903   copying rscripts/diff_expr_plot.R -> build/scripts-3.9
2022-10-28T16:57:35,906   copying rscripts/plot_summary.R -> build/scripts-3.9
2022-10-28T16:57:35,909   copying rscripts/plot_rep_cor.R -> build/scripts-3.9
2022-10-28T16:57:35,911   copying rscripts/diff_expr_edgeR.R -> build/scripts-3.9
2022-10-28T16:57:35,914   copying rscripts/plot_hist.R -> build/scripts-3.9
2022-10-28T16:57:35,916   copying rscripts/plot_deeptools_fragmentsize.R -> build/scripts-3.9
2022-10-28T16:57:35,918   copying rscripts/plot_venn.R -> build/scripts-3.9
2022-10-28T16:57:35,921   copying rscripts/plot_peak_width.R -> build/scripts-3.9
2022-10-28T16:57:35,923   copying rscripts/diff_expr_DESeq2.R -> build/scripts-3.9
2022-10-28T16:57:35,926   copying rscripts/plot_bar.R -> build/scripts-3.9
2022-10-28T16:57:35,928   copying rscripts/plot_corr.R -> build/scripts-3.9
2022-10-28T16:57:35,930   copying rscripts/peak_anno.R -> build/scripts-3.9
2022-10-28T16:57:35,933   copying scripts/gtfparser.sh -> build/scripts-3.9
2022-10-28T16:57:35,935   copying scripts/fasta_len.sh -> build/scripts-3.9
2022-10-28T16:57:35,937   copying scripts/fasta_u2t.sh -> build/scripts-3.9
2022-10-28T16:57:35,939   copying scripts/remove_duplicates.sh -> build/scripts-3.9
2022-10-28T16:57:35,942   copying scripts/fastq_len.sh -> build/scripts-3.9
2022-10-28T16:57:35,944   copying scripts/merge_subseq.sh -> build/scripts-3.9
2022-10-28T16:57:35,946   copying scripts/get_chrom_length.sh -> build/scripts-3.9
2022-10-28T16:57:35,970   installing to build/bdist.linux-armv7l/wheel
2022-10-28T16:57:35,970   running install
2022-10-28T16:57:35,995   running install_lib
2022-10-28T16:57:36,004   creating build/bdist.linux-armv7l
2022-10-28T16:57:36,005   creating build/bdist.linux-armv7l/wheel
2022-10-28T16:57:36,006   creating build/bdist.linux-armv7l/wheel/pybiotk
2022-10-28T16:57:36,008   creating build/bdist.linux-armv7l/wheel/pybiotk/data
2022-10-28T16:57:36,009   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-10-28T16:57:36,011   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-10-28T16:57:36,013   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-10-28T16:57:36,015   creating build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,016   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/subseq_analysis.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,018   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/normalize.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,020   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/pyanno.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,022   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fasta_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,024   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_row.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,027   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/genomefetcher.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,029   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/read_tables.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,031   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_subseq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,032   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,034   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reverse_fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,036   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/utils.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,038   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/gtf_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,040   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/seq_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,042   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_join.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,044   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastx_rename.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,046   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/summary_log.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,048   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reference_count.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,050   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fragment_size.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,052   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/rmats_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,053   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/bam_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,055   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_uniq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-10-28T16:57:36,058   creating build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-10-28T16:57:36,058   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/anno.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-10-28T16:57:36,060   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/merged_transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-10-28T16:57:36,063   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-10-28T16:57:36,065   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-10-28T16:57:36,066   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/gene.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-10-28T16:57:36,069   creating build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-10-28T16:57:36,070   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_intervals.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-10-28T16:57:36,072   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-10-28T16:57:36,073   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_bed3.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-10-28T16:57:36,075   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/grange.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-10-28T16:57:36,078   creating build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-10-28T16:57:36,078   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-10-28T16:57:36,085   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-10-28T16:57:36,103   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-10-28T16:57:36,116   copying build/lib.linux-armv7l-cpython-39/pybiotk/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk
2022-10-28T16:57:36,118   creating build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-10-28T16:57:36,119   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/gtf2bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-10-28T16:57:36,121   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bed2bedgraph.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-10-28T16:57:36,123   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-10-28T16:57:36,124   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bam2fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-10-28T16:57:36,126   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bampe_order_by_name.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-10-28T16:57:36,128   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fq2fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-10-28T16:57:36,130   creating build/bdist.linux-armv7l/wheel/pybiotk/io
2022-10-28T16:57:36,131   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-10-28T16:57:36,133   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bam.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-10-28T16:57:36,135   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/gtf.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-10-28T16:57:36,137   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-10-28T16:57:36,139   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-10-28T16:57:36,141   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bw.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-10-28T16:57:36,143   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-10-28T16:57:36,146   creating build/bdist.linux-armv7l/wheel/stream
2022-10-28T16:57:36,147   copying build/lib.linux-armv7l-cpython-39/stream/stream.py -> build/bdist.linux-armv7l/wheel/stream
2022-10-28T16:57:36,149   copying build/lib.linux-armv7l-cpython-39/stream/__init__.py -> build/bdist.linux-armv7l/wheel/stream
2022-10-28T16:57:36,151   copying build/lib.linux-armv7l-cpython-39/stream/pipe.py -> build/bdist.linux-armv7l/wheel/stream
2022-10-28T16:57:36,153   running install_egg_info
2022-10-28T16:57:36,163   Copying src/pybiotk.egg-info to build/bdist.linux-armv7l/wheel/pybiotk-1.0.9-py3.9.egg-info
2022-10-28T16:57:36,178   running install_scripts
2022-10-28T16:57:36,204   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data
2022-10-28T16:57:36,204   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,205   copying build/scripts-3.9/plot_FRiPs.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,207   copying build/scripts-3.9/gtfparser.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,209   copying build/scripts-3.9/fasta_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,211   copying build/scripts-3.9/diff_expr_plot.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,213   copying build/scripts-3.9/plot_summary.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,215   copying build/scripts-3.9/plot_rep_cor.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,217   copying build/scripts-3.9/diff_expr_edgeR.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,219   copying build/scripts-3.9/plot_hist.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,221   copying build/scripts-3.9/fasta_u2t.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,222   copying build/scripts-3.9/remove_duplicates.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,224   copying build/scripts-3.9/plot_deeptools_fragmentsize.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,226   copying build/scripts-3.9/plot_venn.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,228   copying build/scripts-3.9/plot_peak_width.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,230   copying build/scripts-3.9/fastq_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,231   copying build/scripts-3.9/diff_expr_DESeq2.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,233   copying build/scripts-3.9/merge_subseq.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,235   copying build/scripts-3.9/plot_bar.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,237   copying build/scripts-3.9/plot_corr.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,239   copying build/scripts-3.9/peak_anno.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,241   copying build/scripts-3.9/get_chrom_length.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts
2022-10-28T16:57:36,242   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/plot_FRiPs.R to 755
2022-10-28T16:57:36,242   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/gtfparser.sh to 755
2022-10-28T16:57:36,243   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/fasta_len.sh to 755
2022-10-28T16:57:36,243   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/diff_expr_plot.R to 755
2022-10-28T16:57:36,243   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/plot_summary.R to 755
2022-10-28T16:57:36,243   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/plot_rep_cor.R to 755
2022-10-28T16:57:36,244   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/diff_expr_edgeR.R to 755
2022-10-28T16:57:36,244   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/plot_hist.R to 755
2022-10-28T16:57:36,244   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/fasta_u2t.sh to 755
2022-10-28T16:57:36,244   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/remove_duplicates.sh to 755
2022-10-28T16:57:36,245   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/plot_deeptools_fragmentsize.R to 755
2022-10-28T16:57:36,245   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/plot_venn.R to 755
2022-10-28T16:57:36,245   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/plot_peak_width.R to 755
2022-10-28T16:57:36,245   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/fastq_len.sh to 755
2022-10-28T16:57:36,246   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/diff_expr_DESeq2.R to 755
2022-10-28T16:57:36,246   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/merge_subseq.sh to 755
2022-10-28T16:57:36,246   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/plot_bar.R to 755
2022-10-28T16:57:36,246   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/plot_corr.R to 755
2022-10-28T16:57:36,246   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/peak_anno.R to 755
2022-10-28T16:57:36,247   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.data/scripts/get_chrom_length.sh to 755
2022-10-28T16:57:36,289   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-10-28T16:57:36,307   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.9.dist-info/WHEEL
2022-10-28T16:57:36,309   creating '/tmp/pip-wheel-d2hsjbcg/tmp4pte5emo/pybiotk-1.0.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-10-28T16:57:36,312   adding 'pybiotk/__init__.py'
2022-10-28T16:57:36,313   adding 'pybiotk/annodb/__init__.py'
2022-10-28T16:57:36,315   adding 'pybiotk/annodb/anno.py'
2022-10-28T16:57:36,317   adding 'pybiotk/annodb/gene.py'
2022-10-28T16:57:36,318   adding 'pybiotk/annodb/merged_transcript.py'
2022-10-28T16:57:36,320   adding 'pybiotk/annodb/transcript.py'
2022-10-28T16:57:36,413   adding 'pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so'
2022-10-28T16:57:36,450   adding 'pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so'
2022-10-28T16:57:36,580   adding 'pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so'
2022-10-28T16:57:36,586   adding 'pybiotk/convert/__init__.py'
2022-10-28T16:57:36,587   adding 'pybiotk/convert/bam2fastx.py'
2022-10-28T16:57:36,590   adding 'pybiotk/convert/bampe_order_by_name.py'
2022-10-28T16:57:36,591   adding 'pybiotk/convert/bed2bedgraph.py'
2022-10-28T16:57:36,810   adding 'pybiotk/convert/fq2fasta.py'
2022-10-28T16:57:36,811   adding 'pybiotk/convert/gtf2bed.py'
2022-10-28T16:57:36,813   adding 'pybiotk/data/__init__.py'
2022-10-28T16:57:36,816   adding 'pybiotk/data/hg38.chrom.sizes'
2022-10-28T16:57:36,817   adding 'pybiotk/data/mm10.chrom.sizes'
2022-10-28T16:57:36,819   adding 'pybiotk/intervals/__init__.py'
2022-10-28T16:57:36,821   adding 'pybiotk/intervals/grange.py'
2022-10-28T16:57:36,822   adding 'pybiotk/intervals/merge_bed3.py'
2022-10-28T16:57:36,823   adding 'pybiotk/intervals/merge_intervals.py'
2022-10-28T16:57:36,825   adding 'pybiotk/io/__init__.py'
2022-10-28T16:57:36,827   adding 'pybiotk/io/bam.py'
2022-10-28T16:57:36,829   adding 'pybiotk/io/bed.py'
2022-10-28T16:57:36,830   adding 'pybiotk/io/bw.py'
2022-10-28T16:57:36,832   adding 'pybiotk/io/fasta.py'
2022-10-28T16:57:36,834   adding 'pybiotk/io/fastq.py'
2022-10-28T16:57:36,836   adding 'pybiotk/io/gtf.py'
2022-10-28T16:57:36,838   adding 'pybiotk/utils/__init__.py'
2022-10-28T16:57:36,840   adding 'pybiotk/utils/bam_random.py'
2022-10-28T16:57:36,841   adding 'pybiotk/utils/fasta_filter.py'
2022-10-28T16:57:36,842   adding 'pybiotk/utils/fastq_join.py'
2022-10-28T16:57:36,844   adding 'pybiotk/utils/fastq_uniq.py'
2022-10-28T16:57:36,845   adding 'pybiotk/utils/fastx_rename.py'
2022-10-28T16:57:36,846   adding 'pybiotk/utils/fragment_size.py'
2022-10-28T16:57:36,848   adding 'pybiotk/utils/genomefetcher.py'
2022-10-28T16:57:36,849   adding 'pybiotk/utils/gtf_filter.py'
2022-10-28T16:57:36,851   adding 'pybiotk/utils/merge_row.py'
2022-10-28T16:57:36,852   adding 'pybiotk/utils/merge_subseq.py'
2022-10-28T16:57:36,853   adding 'pybiotk/utils/normalize.py'
2022-10-28T16:57:36,855   adding 'pybiotk/utils/pyanno.py'
2022-10-28T16:57:36,856   adding 'pybiotk/utils/read_tables.py'
2022-10-28T16:57:36,858   adding 'pybiotk/utils/reference_count.py'
2022-10-28T16:57:36,859   adding 'pybiotk/utils/reverse_fastx.py'
2022-10-28T16:57:36,860   adding 'pybiotk/utils/rmats_filter.py'
2022-10-28T16:57:36,862   adding 'pybiotk/utils/seq_random.py'
2022-10-28T16:57:36,863   adding 'pybiotk/utils/subseq_analysis.py'
2022-10-28T16:57:36,864   adding 'pybiotk/utils/summary_log.py'
2022-10-28T16:57:36,866   adding 'pybiotk/utils/utils.py'
2022-10-28T16:57:36,869   adding 'pybiotk-1.0.9.data/scripts/diff_expr_DESeq2.R'
2022-10-28T16:57:36,871   adding 'pybiotk-1.0.9.data/scripts/diff_expr_edgeR.R'
2022-10-28T16:57:36,872   adding 'pybiotk-1.0.9.data/scripts/diff_expr_plot.R'
2022-10-28T16:57:36,873   adding 'pybiotk-1.0.9.data/scripts/fasta_len.sh'
2022-10-28T16:57:36,874   adding 'pybiotk-1.0.9.data/scripts/fasta_u2t.sh'
2022-10-28T16:57:36,875   adding 'pybiotk-1.0.9.data/scripts/fastq_len.sh'
2022-10-28T16:57:36,877   adding 'pybiotk-1.0.9.data/scripts/get_chrom_length.sh'
2022-10-28T16:57:36,878   adding 'pybiotk-1.0.9.data/scripts/gtfparser.sh'
2022-10-28T16:57:36,879   adding 'pybiotk-1.0.9.data/scripts/merge_subseq.sh'
2022-10-28T16:57:36,880   adding 'pybiotk-1.0.9.data/scripts/peak_anno.R'
2022-10-28T16:57:36,882   adding 'pybiotk-1.0.9.data/scripts/plot_FRiPs.R'
2022-10-28T16:57:36,883   adding 'pybiotk-1.0.9.data/scripts/plot_bar.R'
2022-10-28T16:57:36,885   adding 'pybiotk-1.0.9.data/scripts/plot_corr.R'
2022-10-28T16:57:36,886   adding 'pybiotk-1.0.9.data/scripts/plot_deeptools_fragmentsize.R'
2022-10-28T16:57:36,887   adding 'pybiotk-1.0.9.data/scripts/plot_hist.R'
2022-10-28T16:57:36,889   adding 'pybiotk-1.0.9.data/scripts/plot_peak_width.R'
2022-10-28T16:57:36,890   adding 'pybiotk-1.0.9.data/scripts/plot_rep_cor.R'
2022-10-28T16:57:36,891   adding 'pybiotk-1.0.9.data/scripts/plot_summary.R'
2022-10-28T16:57:36,893   adding 'pybiotk-1.0.9.data/scripts/plot_venn.R'
2022-10-28T16:57:36,894   adding 'pybiotk-1.0.9.data/scripts/remove_duplicates.sh'
2022-10-28T16:57:36,898   adding 'stream/__init__.py'
2022-10-28T16:57:36,900   adding 'stream/pipe.py'
2022-10-28T16:57:36,901   adding 'stream/stream.py'
2022-10-28T16:57:36,903   adding 'pybiotk-1.0.9.dist-info/LICENSE.txt'
2022-10-28T16:57:36,904   adding 'pybiotk-1.0.9.dist-info/METADATA'
2022-10-28T16:57:36,905   adding 'pybiotk-1.0.9.dist-info/WHEEL'
2022-10-28T16:57:36,906   adding 'pybiotk-1.0.9.dist-info/entry_points.txt'
2022-10-28T16:57:36,907   adding 'pybiotk-1.0.9.dist-info/top_level.txt'
2022-10-28T16:57:36,908   adding 'pybiotk-1.0.9.dist-info/RECORD'
2022-10-28T16:57:36,920   removing build/bdist.linux-armv7l/wheel
2022-10-28T16:57:37,143   Building wheel for pybiotk (pyproject.toml): finished with status 'done'
2022-10-28T16:57:37,160   Created wheel for pybiotk: filename=pybiotk-1.0.9-cp39-cp39-linux_armv7l.whl size=558217 sha256=0b05bf968d17d6ee92be8bf21cf3991df7cb3b3d685fee09049dedb2f9d5ee7c
2022-10-28T16:57:37,161   Stored in directory: /tmp/pip-ephem-wheel-cache-5cw1vovi/wheels/09/4d/40/acbfcad6ed7f645cea2afa76dc8f4ced294c99fb74890f1c8a
2022-10-28T16:57:37,175 Successfully built pybiotk
2022-10-28T16:57:37,196 Removed build tracker: '/tmp/pip-build-tracker-9i82_9ee'