2022-10-28T21:21:41,143 Created temporary directory: /tmp/pip-ephem-wheel-cache-ija1faue 2022-10-28T21:21:41,147 Created temporary directory: /tmp/pip-build-tracker-gqoi9t_h 2022-10-28T21:21:41,148 Initialized build tracking at /tmp/pip-build-tracker-gqoi9t_h 2022-10-28T21:21:41,149 Created build tracker: /tmp/pip-build-tracker-gqoi9t_h 2022-10-28T21:21:41,149 Entered build tracker: /tmp/pip-build-tracker-gqoi9t_h 2022-10-28T21:21:41,150 Created temporary directory: /tmp/pip-wheel-vg7uume1 2022-10-28T21:21:41,158 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-28T21:21:41,163 Created temporary directory: /tmp/pip-ephem-wheel-cache-vfcl5p14 2022-10-28T21:21:41,221 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-28T21:21:41,228 2 location(s) to search for versions of codon-bias: 2022-10-28T21:21:41,228 * https://pypi.org/simple/codon-bias/ 2022-10-28T21:21:41,228 * https://www.piwheels.org/simple/codon-bias/ 2022-10-28T21:21:41,229 Fetching project page and analyzing links: https://pypi.org/simple/codon-bias/ 2022-10-28T21:21:41,230 Getting page https://pypi.org/simple/codon-bias/ 2022-10-28T21:21:41,234 Found index url https://pypi.org/simple 2022-10-28T21:21:41,459 Fetched page https://pypi.org/simple/codon-bias/ as application/vnd.pypi.simple.v1+json 2022-10-28T21:21:41,463 Found link https://files.pythonhosted.org/packages/17/35/c2e6fcb73d84d1f5035be8092cee3b2af06af723b84352638447529d227c/codon-bias-0.1.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.1.0 2022-10-28T21:21:41,464 Found link https://files.pythonhosted.org/packages/cc/4e/11bcc186f4618fba833af761d7d3e7598b3c57ee4d11f7c733790bb5db20/codon-bias-0.2.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.2.0 2022-10-28T21:21:41,466 Found link https://files.pythonhosted.org/packages/0f/54/80ba04878f8ca4da7f365e64dffc75c1f0e3271a382f4128a0f85f66ce09/codon-bias-0.3.0.tar.gz (from https://pypi.org/simple/codon-bias/) (requires-python:>=3), version: 0.3.0 2022-10-28T21:21:41,466 Fetching project page and analyzing links: https://www.piwheels.org/simple/codon-bias/ 2022-10-28T21:21:41,467 Getting page https://www.piwheels.org/simple/codon-bias/ 2022-10-28T21:21:41,469 Found index url https://www.piwheels.org/simple 2022-10-28T21:21:41,743 Fetched page https://www.piwheels.org/simple/codon-bias/ as text/html 2022-10-28T21:21:41,747 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.2.0-py3-none-any.whl#sha256=54af1367ee5a968ac294644b098ab9e7b911598789435a083c12187ceeeb410e (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2022-10-28T21:21:41,748 Skipping link: No binaries permitted for codon-bias: https://www.piwheels.org/simple/codon-bias/codon_bias-0.1.0-py3-none-any.whl#sha256=45c2aa92ebf3bab8074d6a6e66799cacc106af5c5635b2eb1d6e2369f37a9ed8 (from https://www.piwheels.org/simple/codon-bias/) (requires-python:>=3) 2022-10-28T21:21:41,748 Skipping link: not a file: https://www.piwheels.org/simple/codon-bias/ 2022-10-28T21:21:41,749 Skipping link: not a file: https://pypi.org/simple/codon-bias/ 2022-10-28T21:21:41,781 Given no hashes to check 1 links for project 'codon-bias': discarding no candidates 2022-10-28T21:21:41,815 Collecting codon-bias==0.3.0 2022-10-28T21:21:41,819 Created temporary directory: /tmp/pip-unpack-9w8u_94d 2022-10-28T21:21:42,070 Downloading codon-bias-0.3.0.tar.gz (22 kB) 2022-10-28T21:21:42,191 Added codon-bias==0.3.0 from https://files.pythonhosted.org/packages/0f/54/80ba04878f8ca4da7f365e64dffc75c1f0e3271a382f4128a0f85f66ce09/codon-bias-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-gqoi9t_h' 2022-10-28T21:21:42,194 Running setup.py (path:/tmp/pip-wheel-vg7uume1/codon-bias_160cacf25a5842ce8b423225d0374ae2/setup.py) egg_info for package codon-bias 2022-10-28T21:21:42,195 Created temporary directory: /tmp/pip-pip-egg-info-6oujag3m 2022-10-28T21:21:42,196 Preparing metadata (setup.py): started 2022-10-28T21:21:42,198 Running command python setup.py egg_info 2022-10-28T21:21:44,886 running egg_info 2022-10-28T21:21:44,892 creating /tmp/pip-pip-egg-info-6oujag3m/codon_bias.egg-info 2022-10-28T21:21:44,946 writing /tmp/pip-pip-egg-info-6oujag3m/codon_bias.egg-info/PKG-INFO 2022-10-28T21:21:44,950 writing dependency_links to /tmp/pip-pip-egg-info-6oujag3m/codon_bias.egg-info/dependency_links.txt 2022-10-28T21:21:44,955 writing requirements to /tmp/pip-pip-egg-info-6oujag3m/codon_bias.egg-info/requires.txt 2022-10-28T21:21:44,957 writing top-level names to /tmp/pip-pip-egg-info-6oujag3m/codon_bias.egg-info/top_level.txt 2022-10-28T21:21:44,959 writing manifest file '/tmp/pip-pip-egg-info-6oujag3m/codon_bias.egg-info/SOURCES.txt' 2022-10-28T21:21:45,131 reading manifest file '/tmp/pip-pip-egg-info-6oujag3m/codon_bias.egg-info/SOURCES.txt' 2022-10-28T21:21:45,133 reading manifest template 'MANIFEST.in' 2022-10-28T21:21:45,136 adding license file 'LICENSE' 2022-10-28T21:21:45,141 writing manifest file '/tmp/pip-pip-egg-info-6oujag3m/codon_bias.egg-info/SOURCES.txt' 2022-10-28T21:21:45,345 Preparing metadata (setup.py): finished with status 'done' 2022-10-28T21:21:45,358 Source in /tmp/pip-wheel-vg7uume1/codon-bias_160cacf25a5842ce8b423225d0374ae2 has version 0.3.0, which satisfies requirement codon-bias==0.3.0 from https://files.pythonhosted.org/packages/0f/54/80ba04878f8ca4da7f365e64dffc75c1f0e3271a382f4128a0f85f66ce09/codon-bias-0.3.0.tar.gz 2022-10-28T21:21:45,360 Removed codon-bias==0.3.0 from https://files.pythonhosted.org/packages/0f/54/80ba04878f8ca4da7f365e64dffc75c1f0e3271a382f4128a0f85f66ce09/codon-bias-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-gqoi9t_h' 2022-10-28T21:21:45,375 Created temporary directory: /tmp/pip-unpack-4x40x_ny 2022-10-28T21:21:45,376 Building wheels for collected packages: codon-bias 2022-10-28T21:21:45,385 Created temporary directory: /tmp/pip-wheel-nl3ngmde 2022-10-28T21:21:45,386 Building wheel for codon-bias (setup.py): started 2022-10-28T21:21:45,388 Destination directory: /tmp/pip-wheel-nl3ngmde 2022-10-28T21:21:45,389 Running command python setup.py bdist_wheel 2022-10-28T21:21:47,800 running bdist_wheel 2022-10-28T21:21:47,961 running build 2022-10-28T21:21:47,961 running build_py 2022-10-28T21:21:48,021 creating build 2022-10-28T21:21:48,022 creating build/lib 2022-10-28T21:21:48,023 creating build/lib/codonbias 2022-10-28T21:21:48,025 copying codonbias/stats.py -> build/lib/codonbias 2022-10-28T21:21:48,029 copying codonbias/__init__.py -> build/lib/codonbias 2022-10-28T21:21:48,032 copying codonbias/pairwise.py -> build/lib/codonbias 2022-10-28T21:21:48,035 copying codonbias/scores.py -> build/lib/codonbias 2022-10-28T21:21:48,041 copying codonbias/random.py -> build/lib/codonbias 2022-10-28T21:21:48,045 copying codonbias/optimizers.py -> build/lib/codonbias 2022-10-28T21:21:48,049 copying codonbias/utils.py -> build/lib/codonbias 2022-10-28T21:21:48,052 running egg_info 2022-10-28T21:21:48,180 writing codon_bias.egg-info/PKG-INFO 2022-10-28T21:21:48,183 writing dependency_links to codon_bias.egg-info/dependency_links.txt 2022-10-28T21:21:48,187 writing requirements to codon_bias.egg-info/requires.txt 2022-10-28T21:21:48,189 writing top-level names to codon_bias.egg-info/top_level.txt 2022-10-28T21:21:48,263 reading manifest file 'codon_bias.egg-info/SOURCES.txt' 2022-10-28T21:21:48,267 reading manifest template 'MANIFEST.in' 2022-10-28T21:21:48,269 adding license file 'LICENSE' 2022-10-28T21:21:48,275 writing manifest file 'codon_bias.egg-info/SOURCES.txt' 2022-10-28T21:21:48,281 copying codonbias/genetic_code_ncbi.csv -> build/lib/codonbias 2022-10-28T21:21:48,285 copying codonbias/tAI_svalues_Tuller.csv -> build/lib/codonbias 2022-10-28T21:21:48,289 copying codonbias/tAI_svalues_dosReis.csv -> build/lib/codonbias 2022-10-28T21:21:48,356 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-10-28T21:21:48,357 setuptools.SetuptoolsDeprecationWarning, 2022-10-28T21:21:48,413 installing to build/bdist.linux-armv7l/wheel 2022-10-28T21:21:48,413 running install 2022-10-28T21:21:48,475 running install_lib 2022-10-28T21:21:48,535 creating build/bdist.linux-armv7l 2022-10-28T21:21:48,535 creating build/bdist.linux-armv7l/wheel 2022-10-28T21:21:48,539 creating build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,540 copying build/lib/codonbias/stats.py -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,546 copying build/lib/codonbias/tAI_svalues_Tuller.csv -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,549 copying build/lib/codonbias/__init__.py -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,553 copying build/lib/codonbias/pairwise.py -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,557 copying build/lib/codonbias/scores.py -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,563 copying build/lib/codonbias/random.py -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,569 copying build/lib/codonbias/optimizers.py -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,574 copying build/lib/codonbias/genetic_code_ncbi.csv -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,577 copying build/lib/codonbias/utils.py -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,582 copying build/lib/codonbias/tAI_svalues_dosReis.csv -> build/bdist.linux-armv7l/wheel/codonbias 2022-10-28T21:21:48,586 running install_egg_info 2022-10-28T21:21:48,654 Copying codon_bias.egg-info to build/bdist.linux-armv7l/wheel/codon_bias-0.3.0-py3.7.egg-info 2022-10-28T21:21:48,674 running install_scripts 2022-10-28T21:21:48,823 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-28T21:21:48,831 creating build/bdist.linux-armv7l/wheel/codon_bias-0.3.0.dist-info/WHEEL 2022-10-28T21:21:48,836 creating '/tmp/pip-wheel-nl3ngmde/codon_bias-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-28T21:21:48,843 adding 'codonbias/__init__.py' 2022-10-28T21:21:48,846 adding 'codonbias/genetic_code_ncbi.csv' 2022-10-28T21:21:48,849 adding 'codonbias/optimizers.py' 2022-10-28T21:21:48,852 adding 'codonbias/pairwise.py' 2022-10-28T21:21:48,857 adding 'codonbias/random.py' 2022-10-28T21:21:48,867 adding 'codonbias/scores.py' 2022-10-28T21:21:48,872 adding 'codonbias/stats.py' 2022-10-28T21:21:48,874 adding 'codonbias/tAI_svalues_Tuller.csv' 2022-10-28T21:21:48,876 adding 'codonbias/tAI_svalues_dosReis.csv' 2022-10-28T21:21:48,880 adding 'codonbias/utils.py' 2022-10-28T21:21:48,882 adding 'codon_bias-0.3.0.dist-info/LICENSE' 2022-10-28T21:21:48,884 adding 'codon_bias-0.3.0.dist-info/METADATA' 2022-10-28T21:21:48,885 adding 'codon_bias-0.3.0.dist-info/WHEEL' 2022-10-28T21:21:48,887 adding 'codon_bias-0.3.0.dist-info/top_level.txt' 2022-10-28T21:21:48,888 adding 'codon_bias-0.3.0.dist-info/RECORD' 2022-10-28T21:21:48,891 removing build/bdist.linux-armv7l/wheel 2022-10-28T21:21:49,128 Building wheel for codon-bias (setup.py): finished with status 'done' 2022-10-28T21:21:49,137 Created wheel for codon-bias: filename=codon_bias-0.3.0-py3-none-any.whl size=26568 sha256=d3bc123aaf0d19c1e1e0e294b090f33fb6784cdc5e271759162ecd80d8545586 2022-10-28T21:21:49,139 Stored in directory: /tmp/pip-ephem-wheel-cache-vfcl5p14/wheels/e9/ca/00/7bb6755c2eeaa97591f245b72e608ac8c2ebeda81d0d4425cf 2022-10-28T21:21:49,167 Successfully built codon-bias 2022-10-28T21:21:49,179 Removed build tracker: '/tmp/pip-build-tracker-gqoi9t_h'