2022-10-28T21:50:33,006 Created temporary directory: /tmp/pip-ephem-wheel-cache-_8h9qh8q
2022-10-28T21:50:33,011 Created temporary directory: /tmp/pip-build-tracker-cxjz4g_a
2022-10-28T21:50:33,012 Initialized build tracking at /tmp/pip-build-tracker-cxjz4g_a
2022-10-28T21:50:33,012 Created build tracker: /tmp/pip-build-tracker-cxjz4g_a
2022-10-28T21:50:33,012 Entered build tracker: /tmp/pip-build-tracker-cxjz4g_a
2022-10-28T21:50:33,013 Created temporary directory: /tmp/pip-wheel-mmx8r1fx
2022-10-28T21:50:33,022 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-10-28T21:50:33,027 Created temporary directory: /tmp/pip-ephem-wheel-cache-mz7qnt71
2022-10-28T21:50:33,077 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-28T21:50:33,084 2 location(s) to search for versions of staramr:
2022-10-28T21:50:33,084 * https://pypi.org/simple/staramr/
2022-10-28T21:50:33,084 * https://www.piwheels.org/simple/staramr/
2022-10-28T21:50:33,085 Fetching project page and analyzing links: https://pypi.org/simple/staramr/
2022-10-28T21:50:33,086 Getting page https://pypi.org/simple/staramr/
2022-10-28T21:50:33,090 Found index url https://pypi.org/simple
2022-10-28T21:50:33,275 Fetched page https://pypi.org/simple/staramr/ as application/vnd.pypi.simple.v1+json
2022-10-28T21:50:33,295   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/ed/c1/0c4b1cea22a9e988e2f0e434e4d02bca85dae2f3fd2ec1a40cf9389a4e67/staramr-0.1.0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,296   Found link https://files.pythonhosted.org/packages/77/9a/9d597ed9baf54db2b4937f3720cebf26d8ab515e9e4c3fb487c0fea07833/staramr-0.1.0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.1.0
2022-10-28T21:50:33,297   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/22/53/81d8e070c9427f690fcce515ab0e27b0f22bce4c015c7083ba7ed4709a91/staramr-0.2.0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,297   Found link https://files.pythonhosted.org/packages/b6/87/83b39de77cbc4f04d955d71999b431eb94235d79f98534294fef8aaf2581/staramr-0.2.0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.2.0
2022-10-28T21:50:33,298   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/32/fe/ef8abc1db55c973cd70f6ce91a941f613e3fe7b6af06178071ca60c15d10/staramr-0.2.1-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,299   Found link https://files.pythonhosted.org/packages/9b/11/b64e9c1ecab39a830cc4328fc690aafbaf56bc6826708a90eeadb1b8d622/staramr-0.2.1.tar.gz (from https://pypi.org/simple/staramr/), version: 0.2.1
2022-10-28T21:50:33,299   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/26/23/e5c02cc1973e976dafac6a1e55097c8ea917b9886d1090338d41c90fc2f7/staramr-0.2.2-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,300   Found link https://files.pythonhosted.org/packages/e0/a1/94a38de83f532627b171a0aead2baf59a6b4fb82b4b53a20f6d7988f0319/staramr-0.2.2.tar.gz (from https://pypi.org/simple/staramr/), version: 0.2.2
2022-10-28T21:50:33,300   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/d5/21/baa299f120521330371ffe58d49603d0049e92f931ab00177044de6623d5/staramr-0.3.0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,301   Found link https://files.pythonhosted.org/packages/97/e2/c526bee2f9f2ca0dca92d046ffc2f4185a56f4132e15356ca45235aaf8bd/staramr-0.3.0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.3.0
2022-10-28T21:50:33,302   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/f7/9b/7f09766ae1e54baea291c3266e29792c46c31d5b6d2b3a56f889697ffc1a/staramr-0.4.0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,302   Found link https://files.pythonhosted.org/packages/36/f5/eb4cf7a9d69810de1b3f82aba7deda78fb45e5894b298daea00fa1721bb9/staramr-0.4.0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.4.0
2022-10-28T21:50:33,303   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/80/39/1dac22e5cdd2a94999bd82291c4c2ae1251a1b243b283de304c2f8755589/staramr-0.5.0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,304   Found link https://files.pythonhosted.org/packages/70/58/7bac828bc88df38a1841df7a6ad5cf59524d4085b58bd3fd710d052176e3/staramr-0.5.0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.5.0
2022-10-28T21:50:33,304   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/1b/af/bc801c0cb31ecf523e0ed826478d384cb1a461694b45f70cd8512a902d05/staramr-0.5.1-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,305   Found link https://files.pythonhosted.org/packages/10/6a/a33fcd3f1523ae336edd2f3db7cb0791cd7278b3d13d0a10287ff50d4cf0/staramr-0.5.1.tar.gz (from https://pypi.org/simple/staramr/), version: 0.5.1
2022-10-28T21:50:33,305   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/f4/11/38982e14f878caec3d6d47557acbf8ec35ae45d8b9be5e16152ea0904d08/staramr-0.6.0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,306   Found link https://files.pythonhosted.org/packages/33/37/213f6895f0dddb21d1a7c448dc4609f560115cca0b66cfda2e08375f191b/staramr-0.6.0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.6.0
2022-10-28T21:50:33,307   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/f3/bd/96e937df3bf7433e0d115eaabfa5de53e284a651b64e67122d12fa9a107b/staramr-0.6.1-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,307   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ad/d9/fbe1168693468fa864f87ba19de12e606520a187859926f8156b46047cf8/staramr-0.6.1-py3.6.egg (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,308   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/cd/68/0c243dac827bf9345878d7ad4337c9d65800c21d0d9693b0fbe8f2b58714/staramr-0.6.1-py3.7.egg (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,308   Found link https://files.pythonhosted.org/packages/08/f4/d0f99d6f6902b2f62c7f61c4aee282b806d07d0be964887c1065b13aa9f8/staramr-0.6.1.tar.gz (from https://pypi.org/simple/staramr/), version: 0.6.1
2022-10-28T21:50:33,309   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/6a/11/9f21478096f6aa3432345698389bbb40ca4382829480e2b93edb8fb412fe/staramr-0.7.0a0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,309   Found link https://files.pythonhosted.org/packages/8b/bb/dff1320f729ee5accdec1717ec99c494d87493686fac9c3d6b95e812baa1/staramr-0.7.0a0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.7.0a0
2022-10-28T21:50:33,310   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/bd/c5/0a1cd1ac4eba7a432fad3fe9fe8aaadd5f5d8381b870a56d0b1d2ced1278/staramr-0.7.0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,311   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/51/d4/ed56738b25bd9c295b62360c7bc4bfa4894235f742a4cb18eb9c52f6c0a9/staramr-0.7.0-py3.7.egg (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,311   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c3/6d/b6163b8e6bc20efd5e06213692ba2c0092f5b4d0ba49285df22c053efb99/staramr-0.7.0-py3.8.egg (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,312   Found link https://files.pythonhosted.org/packages/b0/73/8d598f8d11bda54c3e0e80f1f0e64daee597d44a28aa9346c7923b9a566b/staramr-0.7.0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.7.0
2022-10-28T21:50:33,312   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/4e/42/1d6e54ed69d7b28e7a6bf2b9e37c6d44fb06ac4cc0a0e89d6bc2d7f4ccce/staramr-0.7.1-py3.8.egg (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,313   Found link https://files.pythonhosted.org/packages/66/47/b016a0dc8fd4a69986c4961f58f02776bdb91ea1039abeb55e556da043c7/staramr-0.7.1.tar.gz (from https://pypi.org/simple/staramr/), version: 0.7.1
2022-10-28T21:50:33,314   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/cb/bb/f8102643c61c8551b32ddd47b1a7518d8012e76e75af24603edd15a960d4/staramr-0.7.2-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,314   Found link https://files.pythonhosted.org/packages/e4/71/3ba1115a29c1b2c4a163b5d1f9ab3e44c029db5181b424a37a8449287a2c/staramr-0.7.2.tar.gz (from https://pypi.org/simple/staramr/), version: 0.7.2
2022-10-28T21:50:33,315   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/89/4b/7676e12549d4dadedaca7cddf6274e36775763324166ced94aa72d06838c/staramr-0.8.0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,315   Found link https://files.pythonhosted.org/packages/bb/c3/4f9d134050c63b9c6d911025d03abaf5cfeedd112893f3906cacd331f942/staramr-0.8.0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.8.0
2022-10-28T21:50:33,316   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/5e/0b/f3ca45f48126fca819aab036e1e5e0c7ff69e4329e44efeed5a3752cfb78/staramr-0.9.0-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,317   Found link https://files.pythonhosted.org/packages/69/5c/d71412a1285e650a58d2a4435e846b6795c1c2cb82ce0b11ab52396239ee/staramr-0.9.0.tar.gz (from https://pypi.org/simple/staramr/), version: 0.9.0
2022-10-28T21:50:33,317   Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/29/f3/e4bbb71c9e69cf0adfd24e013c7c07fa8347a02c9582ee27ad57af5ac05b/staramr-0.9.1-py3-none-any.whl (from https://pypi.org/simple/staramr/)
2022-10-28T21:50:33,318   Found link https://files.pythonhosted.org/packages/51/6f/e685c47e0f99a8c25ab7e6e6d710de08c87d25e448c99f50105128e7d5b6/staramr-0.9.1.tar.gz (from https://pypi.org/simple/staramr/), version: 0.9.1
2022-10-28T21:50:33,319 Fetching project page and analyzing links: https://www.piwheels.org/simple/staramr/
2022-10-28T21:50:33,319 Getting page https://www.piwheels.org/simple/staramr/
2022-10-28T21:50:33,321 Found index url https://www.piwheels.org/simple
2022-10-28T21:50:37,498 Fetched page https://www.piwheels.org/simple/staramr/ as text/html
2022-10-28T21:50:37,511   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.9.0-py3-none-any.whl#sha256=647181a8001abed9540dbf957596bba15ef1c644d31d9703370ce48af1f44e6a (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,511   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.8.0-py3-none-any.whl#sha256=fa4382aa1bb8289c73da3ed22a04bf21379d21fd06c47fa1224c7d8178d4f118 (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,512   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.7.2-py3-none-any.whl#sha256=4d8b00445b2ca860a9a4cdbcee25a06fa8d559db8005a092c668d796792a63e6 (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,512   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.7.1-py3-none-any.whl#sha256=18edee67061357bd5b0b96011f95963950e33b1ab03acec5540159de4bc8dbd5 (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,513   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.7.0-py3-none-any.whl#sha256=8fc931f6f4eaa25abd53127962b2a17912a926d355290aee609d5931545f76b1 (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,514   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.7.0a0-py3-none-any.whl#sha256=777b88380e6dcad1504e93a926ab2783b3d9d7102b83c469d0393e51ac67cd45 (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,514   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.6.1-py3-none-any.whl#sha256=b9537c2185b7a551704639273c48fdc790d7b997313a9d496df23f6e1f4de98b (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,515   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.6.0-py3-none-any.whl#sha256=45fa75c521756c6d726a63480dde09f2d5e8a30466d632468b57b03e985744cf (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,515   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.5.1-py3-none-any.whl#sha256=5bf6387b50880ffb5ee980f712d43a8e15e4603908433c8882a312d9b9b31274 (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,516   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.5.0-py3-none-any.whl#sha256=eeccb3c6b929280fccae3b59064afe461e6064782a5239a1790e34511a8b4f30 (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,516   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.4.0-py3-none-any.whl#sha256=fd6d7e296b21430588fa209c09611f4666eb50bb3958f2e78178b6ecd23fa1bc (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,517   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.3.0-py3-none-any.whl#sha256=989b5362c5877dcfba34656d7210dc0597b1e6a9b1ca0b7f2c524686c7968e0b (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,517   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.2.2-py3-none-any.whl#sha256=71fa01a4024a0fcf881dffbf1743b35b6c5be99de1fa504f2883d1ad0ce2dc49 (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,518   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.2.1-py3-none-any.whl#sha256=e79bd3578035dc6b04d3409d3e6f3e284fbb1003625e3894e28104986ffd15e9 (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,518   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.2.0-py3-none-any.whl#sha256=bcc339941ae43d23708135066a14b0b587e37a84c0eb84f85d06cef6f433aa2b (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,519   Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.1.0-py3-none-any.whl#sha256=e6196caf71f9bc8fa59b2fb7a13d74b0f2247207488039b6b908d9ccd52cdc4a (from https://www.piwheels.org/simple/staramr/)
2022-10-28T21:50:37,519 Skipping link: not a file: https://www.piwheels.org/simple/staramr/
2022-10-28T21:50:37,520 Skipping link: not a file: https://pypi.org/simple/staramr/
2022-10-28T21:50:37,555 Given no hashes to check 1 links for project 'staramr': discarding no candidates
2022-10-28T21:50:37,587 Collecting staramr==0.9.1
2022-10-28T21:50:37,591   Created temporary directory: /tmp/pip-unpack-mr31knzq
2022-10-28T21:50:37,691   Downloading staramr-0.9.1.tar.gz (749 kB)
2022-10-28T21:50:39,732   Added staramr==0.9.1 from https://files.pythonhosted.org/packages/51/6f/e685c47e0f99a8c25ab7e6e6d710de08c87d25e448c99f50105128e7d5b6/staramr-0.9.1.tar.gz to build tracker '/tmp/pip-build-tracker-cxjz4g_a'
2022-10-28T21:50:39,735   Running setup.py (path:/tmp/pip-wheel-mmx8r1fx/staramr_545266bdc5874113849288334f9561e4/setup.py) egg_info for package staramr
2022-10-28T21:50:39,737   Created temporary directory: /tmp/pip-pip-egg-info-ouyw9yxm
2022-10-28T21:50:39,737   Preparing metadata (setup.py): started
2022-10-28T21:50:39,739   Running command python setup.py egg_info
2022-10-28T21:50:42,093   running egg_info
2022-10-28T21:50:42,097   creating /tmp/pip-pip-egg-info-ouyw9yxm/staramr.egg-info
2022-10-28T21:50:42,146   writing /tmp/pip-pip-egg-info-ouyw9yxm/staramr.egg-info/PKG-INFO
2022-10-28T21:50:42,150   writing dependency_links to /tmp/pip-pip-egg-info-ouyw9yxm/staramr.egg-info/dependency_links.txt
2022-10-28T21:50:42,155   writing requirements to /tmp/pip-pip-egg-info-ouyw9yxm/staramr.egg-info/requires.txt
2022-10-28T21:50:42,157   writing top-level names to /tmp/pip-pip-egg-info-ouyw9yxm/staramr.egg-info/top_level.txt
2022-10-28T21:50:42,160   writing manifest file '/tmp/pip-pip-egg-info-ouyw9yxm/staramr.egg-info/SOURCES.txt'
2022-10-28T21:50:42,416   reading manifest file '/tmp/pip-pip-egg-info-ouyw9yxm/staramr.egg-info/SOURCES.txt'
2022-10-28T21:50:42,418   reading manifest template 'MANIFEST.in'
2022-10-28T21:50:42,610   adding license file 'LICENSE'
2022-10-28T21:50:42,610   adding license file 'NOTICE'
2022-10-28T21:50:42,652   writing manifest file '/tmp/pip-pip-egg-info-ouyw9yxm/staramr.egg-info/SOURCES.txt'
2022-10-28T21:50:42,813   Preparing metadata (setup.py): finished with status 'done'
2022-10-28T21:50:42,825   Source in /tmp/pip-wheel-mmx8r1fx/staramr_545266bdc5874113849288334f9561e4 has version 0.9.1, which satisfies requirement staramr==0.9.1 from https://files.pythonhosted.org/packages/51/6f/e685c47e0f99a8c25ab7e6e6d710de08c87d25e448c99f50105128e7d5b6/staramr-0.9.1.tar.gz
2022-10-28T21:50:42,827   Removed staramr==0.9.1 from https://files.pythonhosted.org/packages/51/6f/e685c47e0f99a8c25ab7e6e6d710de08c87d25e448c99f50105128e7d5b6/staramr-0.9.1.tar.gz from build tracker '/tmp/pip-build-tracker-cxjz4g_a'
2022-10-28T21:50:42,838 Created temporary directory: /tmp/pip-unpack-4ci078uq
2022-10-28T21:50:42,839 Building wheels for collected packages: staramr
2022-10-28T21:50:42,849   Created temporary directory: /tmp/pip-wheel-3xs8cj6e
2022-10-28T21:50:42,850   Building wheel for staramr (setup.py): started
2022-10-28T21:50:42,852   Destination directory: /tmp/pip-wheel-3xs8cj6e
2022-10-28T21:50:42,852   Running command python setup.py bdist_wheel
2022-10-28T21:50:45,190   running bdist_wheel
2022-10-28T21:50:45,337   running build
2022-10-28T21:50:45,338   running build_py
2022-10-28T21:50:45,392   creating build
2022-10-28T21:50:45,393   creating build/lib
2022-10-28T21:50:45,395   creating build/lib/staramr
2022-10-28T21:50:45,398   copying staramr/__init__.py -> build/lib/staramr
2022-10-28T21:50:45,402   copying staramr/Utils.py -> build/lib/staramr
2022-10-28T21:50:45,405   copying staramr/SubCommand.py -> build/lib/staramr
2022-10-28T21:50:45,410   creating build/lib/staramr/detection
2022-10-28T21:50:45,413   copying staramr/detection/AMRDetectionFactory.py -> build/lib/staramr/detection
2022-10-28T21:50:45,417   copying staramr/detection/__init__.py -> build/lib/staramr/detection
2022-10-28T21:50:45,420   copying staramr/detection/AMRDetection.py -> build/lib/staramr/detection
2022-10-28T21:50:45,425   copying staramr/detection/AMRDetectionResistance.py -> build/lib/staramr/detection
2022-10-28T21:50:45,431   creating build/lib/staramr/subcommand
2022-10-28T21:50:45,433   copying staramr/subcommand/__init__.py -> build/lib/staramr/subcommand
2022-10-28T21:50:45,436   copying staramr/subcommand/Database.py -> build/lib/staramr/subcommand
2022-10-28T21:50:45,442   copying staramr/subcommand/Search.py -> build/lib/staramr/subcommand
2022-10-28T21:50:45,450   creating build/lib/staramr/blast
2022-10-28T21:50:45,452   copying staramr/blast/__init__.py -> build/lib/staramr/blast
2022-10-28T21:50:45,455   copying staramr/blast/JobHandler.py -> build/lib/staramr/blast
2022-10-28T21:50:45,460   copying staramr/blast/AbstractBlastDatabase.py -> build/lib/staramr/blast
2022-10-28T21:50:45,466   creating build/lib/staramr/tests
2022-10-28T21:50:45,469   copying staramr/tests/__init__.py -> build/lib/staramr/tests
2022-10-28T21:50:45,474   creating build/lib/staramr/databases
2022-10-28T21:50:45,476   copying staramr/databases/__init__.py -> build/lib/staramr/databases
2022-10-28T21:50:45,480   copying staramr/databases/BlastDatabaseRepositories.py -> build/lib/staramr/databases
2022-10-28T21:50:45,485   copying staramr/databases/AMRDatabasesManager.py -> build/lib/staramr/databases
2022-10-28T21:50:45,490   copying staramr/databases/BlastDatabaseRepository.py -> build/lib/staramr/databases
2022-10-28T21:50:45,496   creating build/lib/staramr/exceptions
2022-10-28T21:50:45,499   copying staramr/exceptions/BlastProcessError.py -> build/lib/staramr/exceptions
2022-10-28T21:50:45,503   copying staramr/exceptions/__init__.py -> build/lib/staramr/exceptions
2022-10-28T21:50:45,507   copying staramr/exceptions/GenotypePhenotypeMatchException.py -> build/lib/staramr/exceptions
2022-10-28T21:50:45,511   copying staramr/exceptions/InvalidPositionException.py -> build/lib/staramr/exceptions
2022-10-28T21:50:45,514   copying staramr/exceptions/CommandParseException.py -> build/lib/staramr/exceptions
2022-10-28T21:50:45,518   copying staramr/exceptions/DatabaseNotFoundException.py -> build/lib/staramr/exceptions
2022-10-28T21:50:45,522   copying staramr/exceptions/DatabaseErrorException.py -> build/lib/staramr/exceptions
2022-10-28T21:50:45,527   creating build/lib/staramr/results
2022-10-28T21:50:45,529   copying staramr/results/AMRDetectionSummaryResistance.py -> build/lib/staramr/results
2022-10-28T21:50:45,532   copying staramr/results/__init__.py -> build/lib/staramr/results
2022-10-28T21:50:45,535   copying staramr/results/AMRDetectionSummary.py -> build/lib/staramr/results
2022-10-28T21:50:45,539   copying staramr/results/QualityModule.py -> build/lib/staramr/results
2022-10-28T21:50:45,545   creating build/lib/staramr/blast/pointfinder
2022-10-28T21:50:45,546   copying staramr/blast/pointfinder/PointfinderDatabaseInfo.py -> build/lib/staramr/blast/pointfinder
2022-10-28T21:50:45,551   copying staramr/blast/pointfinder/__init__.py -> build/lib/staramr/blast/pointfinder
2022-10-28T21:50:45,554   copying staramr/blast/pointfinder/PointfinderBlastDatabase.py -> build/lib/staramr/blast/pointfinder
2022-10-28T21:50:45,559   creating build/lib/staramr/blast/plasmidfinder
2022-10-28T21:50:45,561   copying staramr/blast/plasmidfinder/PlasmidfinderBlastDatabase.py -> build/lib/staramr/blast/plasmidfinder
2022-10-28T21:50:45,565   copying staramr/blast/plasmidfinder/__init__.py -> build/lib/staramr/blast/plasmidfinder
2022-10-28T21:50:45,570   creating build/lib/staramr/blast/results
2022-10-28T21:50:45,572   copying staramr/blast/results/__init__.py -> build/lib/staramr/blast/results
2022-10-28T21:50:45,574   copying staramr/blast/results/AMRHitHSP.py -> build/lib/staramr/blast/results
2022-10-28T21:50:45,580   copying staramr/blast/results/BlastHitPartitions.py -> build/lib/staramr/blast/results
2022-10-28T21:50:45,585   copying staramr/blast/results/BlastResultsParser.py -> build/lib/staramr/blast/results
2022-10-28T21:50:45,647   creating build/lib/staramr/blast/resfinder
2022-10-28T21:50:45,649   copying staramr/blast/resfinder/__init__.py -> build/lib/staramr/blast/resfinder
2022-10-28T21:50:45,652   copying staramr/blast/resfinder/ResfinderBlastDatabase.py -> build/lib/staramr/blast/resfinder
2022-10-28T21:50:45,656   creating build/lib/staramr/blast/results/pointfinder
2022-10-28T21:50:45,658   copying staramr/blast/results/pointfinder/BlastResultsParserPointfinderResistance.py -> build/lib/staramr/blast/results/pointfinder
2022-10-28T21:50:45,661   copying staramr/blast/results/pointfinder/__init__.py -> build/lib/staramr/blast/results/pointfinder
2022-10-28T21:50:45,663   copying staramr/blast/results/pointfinder/BlastResultsParserPointfinder.py -> build/lib/staramr/blast/results/pointfinder
2022-10-28T21:50:45,667   copying staramr/blast/results/pointfinder/MutationPosition.py -> build/lib/staramr/blast/results/pointfinder
2022-10-28T21:50:45,670   copying staramr/blast/results/pointfinder/PointfinderHitHSP.py -> build/lib/staramr/blast/results/pointfinder
2022-10-28T21:50:45,675   creating build/lib/staramr/blast/results/plasmidfinder
2022-10-28T21:50:45,676   copying staramr/blast/results/plasmidfinder/PlasmidfinderHitHSP.py -> build/lib/staramr/blast/results/plasmidfinder
2022-10-28T21:50:45,679   copying staramr/blast/results/plasmidfinder/__init__.py -> build/lib/staramr/blast/results/plasmidfinder
2022-10-28T21:50:45,682   copying staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinderResistance.py -> build/lib/staramr/blast/results/plasmidfinder
2022-10-28T21:50:45,685   copying staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinder.py -> build/lib/staramr/blast/results/plasmidfinder
2022-10-28T21:50:45,690   creating build/lib/staramr/blast/results/resfinder
2022-10-28T21:50:45,691   copying staramr/blast/results/resfinder/BlastResultsParserResfinder.py -> build/lib/staramr/blast/results/resfinder
2022-10-28T21:50:45,694   copying staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py -> build/lib/staramr/blast/results/resfinder
2022-10-28T21:50:45,698   copying staramr/blast/results/resfinder/__init__.py -> build/lib/staramr/blast/results/resfinder
2022-10-28T21:50:45,700   copying staramr/blast/results/resfinder/ResfinderHitHSP.py -> build/lib/staramr/blast/results/resfinder
2022-10-28T21:50:45,704   creating build/lib/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:45,706   copying staramr/blast/results/pointfinder/nucleotide/__init__.py -> build/lib/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:45,709   copying staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPRNA.py -> build/lib/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:45,712   copying staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPPromoter.py -> build/lib/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:45,716   copying staramr/blast/results/pointfinder/nucleotide/NucleotideMutationPosition.py -> build/lib/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:45,720   creating build/lib/staramr/blast/results/pointfinder/codon
2022-10-28T21:50:45,722   copying staramr/blast/results/pointfinder/codon/CodonMutationPosition.py -> build/lib/staramr/blast/results/pointfinder/codon
2022-10-28T21:50:45,726   copying staramr/blast/results/pointfinder/codon/__init__.py -> build/lib/staramr/blast/results/pointfinder/codon
2022-10-28T21:50:45,729   copying staramr/blast/results/pointfinder/codon/CodonInsertionPosition.py -> build/lib/staramr/blast/results/pointfinder/codon
2022-10-28T21:50:45,733   creating build/lib/staramr/tests/unit
2022-10-28T21:50:45,734   copying staramr/tests/unit/__init__.py -> build/lib/staramr/tests/unit
2022-10-28T21:50:45,738   creating build/lib/staramr/tests/integration
2022-10-28T21:50:45,739   copying staramr/tests/integration/__init__.py -> build/lib/staramr/tests/integration
2022-10-28T21:50:45,743   creating build/lib/staramr/tests/unit/blast
2022-10-28T21:50:45,744   copying staramr/tests/unit/blast/__init__.py -> build/lib/staramr/tests/unit/blast
2022-10-28T21:50:45,748   creating build/lib/staramr/tests/unit/results
2022-10-28T21:50:45,750   copying staramr/tests/unit/results/test_QualityModule.py -> build/lib/staramr/tests/unit/results
2022-10-28T21:50:45,755   copying staramr/tests/unit/results/__init__.py -> build/lib/staramr/tests/unit/results
2022-10-28T21:50:45,758   copying staramr/tests/unit/results/test_AMRDetectionSummary.py -> build/lib/staramr/tests/unit/results
2022-10-28T21:50:45,764   copying staramr/tests/unit/results/test_AMRDetectionSummaryResistance.py -> build/lib/staramr/tests/unit/results
2022-10-28T21:50:45,769   creating build/lib/staramr/tests/unit/blast/pointfinder
2022-10-28T21:50:45,771   copying staramr/tests/unit/blast/pointfinder/test_PointfinderDatabaseInfo.py -> build/lib/staramr/tests/unit/blast/pointfinder
2022-10-28T21:50:45,774   copying staramr/tests/unit/blast/pointfinder/__init__.py -> build/lib/staramr/tests/unit/blast/pointfinder
2022-10-28T21:50:45,778   creating build/lib/staramr/tests/unit/blast/results
2022-10-28T21:50:45,780   copying staramr/tests/unit/blast/results/test_BlastHitPartitions.py -> build/lib/staramr/tests/unit/blast/results
2022-10-28T21:50:45,785   copying staramr/tests/unit/blast/results/__init__.py -> build/lib/staramr/tests/unit/blast/results
2022-10-28T21:50:45,831   creating build/lib/staramr/tests/unit/blast/results/pointfinder
2022-10-28T21:50:45,833   copying staramr/tests/unit/blast/results/pointfinder/test_PointfinderHitHSP.py -> build/lib/staramr/tests/unit/blast/results/pointfinder
2022-10-28T21:50:45,837   copying staramr/tests/unit/blast/results/pointfinder/__init__.py -> build/lib/staramr/tests/unit/blast/results/pointfinder
2022-10-28T21:50:45,840   copying staramr/tests/unit/blast/results/pointfinder/test_PlasmidfinderHitHSP.py -> build/lib/staramr/tests/unit/blast/results/pointfinder
2022-10-28T21:50:45,845   creating build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide
2022-10-28T21:50:45,846   copying staramr/tests/unit/blast/results/pointfinder/nucleotide/__init__.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide
2022-10-28T21:50:45,849   copying staramr/tests/unit/blast/results/pointfinder/nucleotide/test_NucleotideMutationPosition.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide
2022-10-28T21:50:45,854   creating build/lib/staramr/tests/unit/blast/results/pointfinder/codon
2022-10-28T21:50:45,855   copying staramr/tests/unit/blast/results/pointfinder/codon/__init__.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/codon
2022-10-28T21:50:45,859   copying staramr/tests/unit/blast/results/pointfinder/codon/test_CodonMutationPosition.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/codon
2022-10-28T21:50:45,866   creating build/lib/staramr/tests/integration/detection
2022-10-28T21:50:45,867   copying staramr/tests/integration/detection/test_AMRDetection.py -> build/lib/staramr/tests/integration/detection
2022-10-28T21:50:45,877   copying staramr/tests/integration/detection/__init__.py -> build/lib/staramr/tests/integration/detection
2022-10-28T21:50:45,879   copying staramr/tests/integration/detection/test_AMRDetectionMLST.py -> build/lib/staramr/tests/integration/detection
2022-10-28T21:50:45,883   copying staramr/tests/integration/detection/test_AMRDetectionPlasmid.py -> build/lib/staramr/tests/integration/detection
2022-10-28T21:50:45,889   creating build/lib/staramr/tests/integration/databases
2022-10-28T21:50:45,890   copying staramr/tests/integration/databases/__init__.py -> build/lib/staramr/tests/integration/databases
2022-10-28T21:50:45,893   copying staramr/tests/integration/databases/test_BlastDatabaseRepositories.py -> build/lib/staramr/tests/integration/databases
2022-10-28T21:50:45,897   copying staramr/tests/integration/databases/test_AMRDatabasesManager.py -> build/lib/staramr/tests/integration/databases
2022-10-28T21:50:45,902   creating build/lib/staramr/databases/exclude
2022-10-28T21:50:45,903   copying staramr/databases/exclude/ExcludeGenesList.py -> build/lib/staramr/databases/exclude
2022-10-28T21:50:45,907   copying staramr/databases/exclude/__init__.py -> build/lib/staramr/databases/exclude
2022-10-28T21:50:45,910   creating build/lib/staramr/databases/resistance
2022-10-28T21:50:45,912   copying staramr/databases/resistance/__init__.py -> build/lib/staramr/databases/resistance
2022-10-28T21:50:45,915   copying staramr/databases/resistance/ARGDrugTable.py -> build/lib/staramr/databases/resistance
2022-10-28T21:50:45,919   creating build/lib/staramr/databases/resistance/pointfinder
2022-10-28T21:50:45,921   copying staramr/databases/resistance/pointfinder/__init__.py -> build/lib/staramr/databases/resistance/pointfinder
2022-10-28T21:50:45,924   copying staramr/databases/resistance/pointfinder/ARGDrugTablePointfinder.py -> build/lib/staramr/databases/resistance/pointfinder
2022-10-28T21:50:45,928   creating build/lib/staramr/databases/resistance/resfinder
2022-10-28T21:50:45,929   copying staramr/databases/resistance/resfinder/__init__.py -> build/lib/staramr/databases/resistance/resfinder
2022-10-28T21:50:45,932   copying staramr/databases/resistance/resfinder/ARGDrugTableResfinder.py -> build/lib/staramr/databases/resistance/resfinder
2022-10-28T21:50:45,936   running egg_info
2022-10-28T21:50:46,065   writing staramr.egg-info/PKG-INFO
2022-10-28T21:50:46,068   writing dependency_links to staramr.egg-info/dependency_links.txt
2022-10-28T21:50:46,072   writing requirements to staramr.egg-info/requires.txt
2022-10-28T21:50:46,074   writing top-level names to staramr.egg-info/top_level.txt
2022-10-28T21:50:46,166   reading manifest file 'staramr.egg-info/SOURCES.txt'
2022-10-28T21:50:46,211   reading manifest template 'MANIFEST.in'
2022-10-28T21:50:46,394   adding license file 'LICENSE'
2022-10-28T21:50:46,394   adding license file 'NOTICE'
2022-10-28T21:50:46,448   writing manifest file 'staramr.egg-info/SOURCES.txt'
2022-10-28T21:50:46,457   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,458       !!


2022-10-28T21:50:46,459       ############################
2022-10-28T21:50:46,459       # Package would be ignored #
2022-10-28T21:50:46,459       ############################
2022-10-28T21:50:46,459       Python recognizes 'staramr.databases.data.dist' as an importable package,
2022-10-28T21:50:46,460       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,460       'staramr.databases.data.dist' has been automatically added to the distribution only
2022-10-28T21:50:46,461       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,461       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,461       Please make sure that 'staramr.databases.data.dist' is included as a package by using
2022-10-28T21:50:46,462       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,462       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,462       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,463       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,463       documentation page.


2022-10-28T21:50:46,464   !!

2022-10-28T21:50:46,464     check.warn(importable)
2022-10-28T21:50:46,465   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.plasmidfinder' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,465       !!


2022-10-28T21:50:46,466       ############################
2022-10-28T21:50:46,466       # Package would be ignored #
2022-10-28T21:50:46,467       ############################
2022-10-28T21:50:46,467       Python recognizes 'staramr.databases.data.dist.plasmidfinder' as an importable package,
2022-10-28T21:50:46,467       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,468       'staramr.databases.data.dist.plasmidfinder' has been automatically added to the distribution only
2022-10-28T21:50:46,468       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,468       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,469       Please make sure that 'staramr.databases.data.dist.plasmidfinder' is included as a package by using
2022-10-28T21:50:46,469       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,469       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,470       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,470       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,471       documentation page.


2022-10-28T21:50:46,471   !!

2022-10-28T21:50:46,472     check.warn(importable)
2022-10-28T21:50:46,472   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,473       !!


2022-10-28T21:50:46,473       ############################
2022-10-28T21:50:46,474       # Package would be ignored #
2022-10-28T21:50:46,474       ############################
2022-10-28T21:50:46,474       Python recognizes 'staramr.databases.data.dist.pointfinder' as an importable package,
2022-10-28T21:50:46,474       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,475       'staramr.databases.data.dist.pointfinder' has been automatically added to the distribution only
2022-10-28T21:50:46,475       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,476       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,476       Please make sure that 'staramr.databases.data.dist.pointfinder' is included as a package by using
2022-10-28T21:50:46,476       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,477       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,477       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,478       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,478       documentation page.


2022-10-28T21:50:46,479   !!

2022-10-28T21:50:46,479     check.warn(importable)
2022-10-28T21:50:46,480   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.campylobacter' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,480       !!


2022-10-28T21:50:46,481       ############################
2022-10-28T21:50:46,481       # Package would be ignored #
2022-10-28T21:50:46,481       ############################
2022-10-28T21:50:46,482       Python recognizes 'staramr.databases.data.dist.pointfinder.campylobacter' as an importable package,
2022-10-28T21:50:46,482       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,482       'staramr.databases.data.dist.pointfinder.campylobacter' has been automatically added to the distribution only
2022-10-28T21:50:46,483       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,483       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,483       Please make sure that 'staramr.databases.data.dist.pointfinder.campylobacter' is included as a package by using
2022-10-28T21:50:46,484       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,484       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,484       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,485       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,485       documentation page.


2022-10-28T21:50:46,486   !!

2022-10-28T21:50:46,486     check.warn(importable)
2022-10-28T21:50:46,487   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.enterococcus_faecalis' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,487       !!


2022-10-28T21:50:46,488       ############################
2022-10-28T21:50:46,488       # Package would be ignored #
2022-10-28T21:50:46,489       ############################
2022-10-28T21:50:46,489       Python recognizes 'staramr.databases.data.dist.pointfinder.enterococcus_faecalis' as an importable package,
2022-10-28T21:50:46,489       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,490       'staramr.databases.data.dist.pointfinder.enterococcus_faecalis' has been automatically added to the distribution only
2022-10-28T21:50:46,490       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,490       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,491       Please make sure that 'staramr.databases.data.dist.pointfinder.enterococcus_faecalis' is included as a package by using
2022-10-28T21:50:46,491       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,492       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,492       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,492       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,493       documentation page.


2022-10-28T21:50:46,493   !!

2022-10-28T21:50:46,494     check.warn(importable)
2022-10-28T21:50:46,494   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.enterococcus_faecium' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,495       !!


2022-10-28T21:50:46,495       ############################
2022-10-28T21:50:46,496       # Package would be ignored #
2022-10-28T21:50:46,496       ############################
2022-10-28T21:50:46,496       Python recognizes 'staramr.databases.data.dist.pointfinder.enterococcus_faecium' as an importable package,
2022-10-28T21:50:46,496       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,497       'staramr.databases.data.dist.pointfinder.enterococcus_faecium' has been automatically added to the distribution only
2022-10-28T21:50:46,497       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,498       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,498       Please make sure that 'staramr.databases.data.dist.pointfinder.enterococcus_faecium' is included as a package by using
2022-10-28T21:50:46,498       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,499       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,499       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,500       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,500       documentation page.


2022-10-28T21:50:46,501   !!

2022-10-28T21:50:46,501     check.warn(importable)
2022-10-28T21:50:46,501   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.escherichia_coli' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,502       !!


2022-10-28T21:50:46,503       ############################
2022-10-28T21:50:46,503       # Package would be ignored #
2022-10-28T21:50:46,503       ############################
2022-10-28T21:50:46,503       Python recognizes 'staramr.databases.data.dist.pointfinder.escherichia_coli' as an importable package,
2022-10-28T21:50:46,504       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,504       'staramr.databases.data.dist.pointfinder.escherichia_coli' has been automatically added to the distribution only
2022-10-28T21:50:46,504       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,505       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,505       Please make sure that 'staramr.databases.data.dist.pointfinder.escherichia_coli' is included as a package by using
2022-10-28T21:50:46,506       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,506       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,506       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,507       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,507       documentation page.


2022-10-28T21:50:46,508   !!

2022-10-28T21:50:46,509     check.warn(importable)
2022-10-28T21:50:46,509   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.helicobacter_pylori' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,509       !!


2022-10-28T21:50:46,510       ############################
2022-10-28T21:50:46,510       # Package would be ignored #
2022-10-28T21:50:46,510       ############################
2022-10-28T21:50:46,511       Python recognizes 'staramr.databases.data.dist.pointfinder.helicobacter_pylori' as an importable package,
2022-10-28T21:50:46,511       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,512       'staramr.databases.data.dist.pointfinder.helicobacter_pylori' has been automatically added to the distribution only
2022-10-28T21:50:46,512       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,512       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,513       Please make sure that 'staramr.databases.data.dist.pointfinder.helicobacter_pylori' is included as a package by using
2022-10-28T21:50:46,513       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,513       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,513       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,514       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,514       documentation page.


2022-10-28T21:50:46,515   !!

2022-10-28T21:50:46,516     check.warn(importable)
2022-10-28T21:50:46,516   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.klebsiella' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,516       !!


2022-10-28T21:50:46,517       ############################
2022-10-28T21:50:46,517       # Package would be ignored #
2022-10-28T21:50:46,518       ############################
2022-10-28T21:50:46,518       Python recognizes 'staramr.databases.data.dist.pointfinder.klebsiella' as an importable package,
2022-10-28T21:50:46,518       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,519       'staramr.databases.data.dist.pointfinder.klebsiella' has been automatically added to the distribution only
2022-10-28T21:50:46,519       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,519       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,520       Please make sure that 'staramr.databases.data.dist.pointfinder.klebsiella' is included as a package by using
2022-10-28T21:50:46,520       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,520       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,521       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,521       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,521       documentation page.


2022-10-28T21:50:46,522   !!

2022-10-28T21:50:46,523     check.warn(importable)
2022-10-28T21:50:46,523   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.mycobacterium_tuberculosis' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,523       !!


2022-10-28T21:50:46,524       ############################
2022-10-28T21:50:46,524       # Package would be ignored #
2022-10-28T21:50:46,525       ############################
2022-10-28T21:50:46,525       Python recognizes 'staramr.databases.data.dist.pointfinder.mycobacterium_tuberculosis' as an importable package,
2022-10-28T21:50:46,525       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,526       'staramr.databases.data.dist.pointfinder.mycobacterium_tuberculosis' has been automatically added to the distribution only
2022-10-28T21:50:46,526       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,526       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,527       Please make sure that 'staramr.databases.data.dist.pointfinder.mycobacterium_tuberculosis' is included as a package by using
2022-10-28T21:50:46,527       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,528       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,528       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,528       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,529       documentation page.


2022-10-28T21:50:46,529   !!

2022-10-28T21:50:46,530     check.warn(importable)
2022-10-28T21:50:46,531   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.neisseria_gonorrhoeae' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,531       !!


2022-10-28T21:50:46,532       ############################
2022-10-28T21:50:46,532       # Package would be ignored #
2022-10-28T21:50:46,532       ############################
2022-10-28T21:50:46,532       Python recognizes 'staramr.databases.data.dist.pointfinder.neisseria_gonorrhoeae' as an importable package,
2022-10-28T21:50:46,533       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,533       'staramr.databases.data.dist.pointfinder.neisseria_gonorrhoeae' has been automatically added to the distribution only
2022-10-28T21:50:46,534       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,534       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,534       Please make sure that 'staramr.databases.data.dist.pointfinder.neisseria_gonorrhoeae' is included as a package by using
2022-10-28T21:50:46,535       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,535       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,535       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,536       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,536       documentation page.


2022-10-28T21:50:46,537   !!

2022-10-28T21:50:46,537     check.warn(importable)
2022-10-28T21:50:46,538   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.plasmodium_falciparum' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,538       !!


2022-10-28T21:50:46,539       ############################
2022-10-28T21:50:46,539       # Package would be ignored #
2022-10-28T21:50:46,539       ############################
2022-10-28T21:50:46,540       Python recognizes 'staramr.databases.data.dist.pointfinder.plasmodium_falciparum' as an importable package,
2022-10-28T21:50:46,540       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,540       'staramr.databases.data.dist.pointfinder.plasmodium_falciparum' has been automatically added to the distribution only
2022-10-28T21:50:46,541       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,541       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,542       Please make sure that 'staramr.databases.data.dist.pointfinder.plasmodium_falciparum' is included as a package by using
2022-10-28T21:50:46,542       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,542       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,542       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,543       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,543       documentation page.


2022-10-28T21:50:46,544   !!

2022-10-28T21:50:46,545     check.warn(importable)
2022-10-28T21:50:46,545   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.salmonella' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,545       !!


2022-10-28T21:50:46,546       ############################
2022-10-28T21:50:46,546       # Package would be ignored #
2022-10-28T21:50:46,546       ############################
2022-10-28T21:50:46,547       Python recognizes 'staramr.databases.data.dist.pointfinder.salmonella' as an importable package,
2022-10-28T21:50:46,547       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,548       'staramr.databases.data.dist.pointfinder.salmonella' has been automatically added to the distribution only
2022-10-28T21:50:46,548       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,548       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,549       Please make sure that 'staramr.databases.data.dist.pointfinder.salmonella' is included as a package by using
2022-10-28T21:50:46,549       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,549       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,549       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,550       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,550       documentation page.


2022-10-28T21:50:46,551   !!

2022-10-28T21:50:46,552     check.warn(importable)
2022-10-28T21:50:46,552   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.pointfinder.staphylococcus_aureus' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,552       !!


2022-10-28T21:50:46,553       ############################
2022-10-28T21:50:46,553       # Package would be ignored #
2022-10-28T21:50:46,553       ############################
2022-10-28T21:50:46,554       Python recognizes 'staramr.databases.data.dist.pointfinder.staphylococcus_aureus' as an importable package,
2022-10-28T21:50:46,554       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,555       'staramr.databases.data.dist.pointfinder.staphylococcus_aureus' has been automatically added to the distribution only
2022-10-28T21:50:46,555       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,555       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,556       Please make sure that 'staramr.databases.data.dist.pointfinder.staphylococcus_aureus' is included as a package by using
2022-10-28T21:50:46,556       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,556       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,556       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,557       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,557       documentation page.


2022-10-28T21:50:46,558   !!

2022-10-28T21:50:46,559     check.warn(importable)
2022-10-28T21:50:46,559   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.data.dist.resfinder' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,559       !!


2022-10-28T21:50:46,560       ############################
2022-10-28T21:50:46,560       # Package would be ignored #
2022-10-28T21:50:46,561       ############################
2022-10-28T21:50:46,561       Python recognizes 'staramr.databases.data.dist.resfinder' as an importable package,
2022-10-28T21:50:46,561       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,562       'staramr.databases.data.dist.resfinder' has been automatically added to the distribution only
2022-10-28T21:50:46,562       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,562       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,563       Please make sure that 'staramr.databases.data.dist.resfinder' is included as a package by using
2022-10-28T21:50:46,563       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,563       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,564       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,564       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,564       documentation page.


2022-10-28T21:50:46,565   !!

2022-10-28T21:50:46,566     check.warn(importable)
2022-10-28T21:50:46,566   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.exclude.data' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,566       !!


2022-10-28T21:50:46,567       ############################
2022-10-28T21:50:46,568       # Package would be ignored #
2022-10-28T21:50:46,568       ############################
2022-10-28T21:50:46,568       Python recognizes 'staramr.databases.exclude.data' as an importable package,
2022-10-28T21:50:46,568       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,569       'staramr.databases.exclude.data' has been automatically added to the distribution only
2022-10-28T21:50:46,569       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,569       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,570       Please make sure that 'staramr.databases.exclude.data' is included as a package by using
2022-10-28T21:50:46,570       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,571       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,571       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,571       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,572       documentation page.


2022-10-28T21:50:46,572   !!

2022-10-28T21:50:46,573     check.warn(importable)
2022-10-28T21:50:46,573   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.databases.resistance.data' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,574       !!


2022-10-28T21:50:46,574       ############################
2022-10-28T21:50:46,575       # Package would be ignored #
2022-10-28T21:50:46,575       ############################
2022-10-28T21:50:46,575       Python recognizes 'staramr.databases.resistance.data' as an importable package,
2022-10-28T21:50:46,575       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,576       'staramr.databases.resistance.data' has been automatically added to the distribution only
2022-10-28T21:50:46,576       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,577       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,577       Please make sure that 'staramr.databases.resistance.data' is included as a package by using
2022-10-28T21:50:46,577       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,578       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,578       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,579       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,579       documentation page.


2022-10-28T21:50:46,580   !!

2022-10-28T21:50:46,580     check.warn(importable)
2022-10-28T21:50:46,581   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.tests.integration.data' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,581       !!


2022-10-28T21:50:46,582       ############################
2022-10-28T21:50:46,582       # Package would be ignored #
2022-10-28T21:50:46,582       ############################
2022-10-28T21:50:46,583       Python recognizes 'staramr.tests.integration.data' as an importable package,
2022-10-28T21:50:46,583       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,583       'staramr.tests.integration.data' has been automatically added to the distribution only
2022-10-28T21:50:46,584       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,584       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,585       Please make sure that 'staramr.tests.integration.data' is included as a package by using
2022-10-28T21:50:46,585       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,585       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,586       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,586       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,587       documentation page.


2022-10-28T21:50:46,588   !!

2022-10-28T21:50:46,588     check.warn(importable)
2022-10-28T21:50:46,588   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'staramr.tests.unit.data' as data is deprecated, please list it in `packages`.
2022-10-28T21:50:46,589       !!


2022-10-28T21:50:46,590       ############################
2022-10-28T21:50:46,590       # Package would be ignored #
2022-10-28T21:50:46,590       ############################
2022-10-28T21:50:46,591       Python recognizes 'staramr.tests.unit.data' as an importable package,
2022-10-28T21:50:46,591       but it is not listed in the `packages` configuration of setuptools.

2022-10-28T21:50:46,592       'staramr.tests.unit.data' has been automatically added to the distribution only
2022-10-28T21:50:46,592       because it may contain data files, but this behavior is likely to change
2022-10-28T21:50:46,592       in future versions of setuptools (and therefore is considered deprecated).

2022-10-28T21:50:46,593       Please make sure that 'staramr.tests.unit.data' is included as a package by using
2022-10-28T21:50:46,593       the `packages` configuration field or the proper discovery methods
2022-10-28T21:50:46,593       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-10-28T21:50:46,594       instead of `find_packages(...)`/`find:`).

2022-10-28T21:50:46,594       You can read more about "package discovery" and "data files" on setuptools
2022-10-28T21:50:46,595       documentation page.


2022-10-28T21:50:46,595   !!

2022-10-28T21:50:46,596     check.warn(importable)
2022-10-28T21:50:46,596   creating build/lib/staramr/databases/data
2022-10-28T21:50:46,597   creating build/lib/staramr/databases/data/dist
2022-10-28T21:50:46,597   copying staramr/databases/data/dist/plasmidfinder-info.ini -> build/lib/staramr/databases/data/dist
2022-10-28T21:50:46,598   copying staramr/databases/data/dist/pointfinder-info.ini -> build/lib/staramr/databases/data/dist
2022-10-28T21:50:46,598   copying staramr/databases/data/dist/resfinder-info.ini -> build/lib/staramr/databases/data/dist
2022-10-28T21:50:46,600   creating build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,601   copying staramr/databases/data/dist/plasmidfinder/.gitignore -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,606   copying staramr/databases/data/dist/plasmidfinder/INSTALL.py -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,610   copying staramr/databases/data/dist/plasmidfinder/Inc18.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,619   copying staramr/databases/data/dist/plasmidfinder/NT_Rep.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,625   copying staramr/databases/data/dist/plasmidfinder/Rep1.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,635   copying staramr/databases/data/dist/plasmidfinder/Rep2.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,640   copying staramr/databases/data/dist/plasmidfinder/Rep3.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,649   copying staramr/databases/data/dist/plasmidfinder/RepA_N.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,658   copying staramr/databases/data/dist/plasmidfinder/RepL.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,662   copying staramr/databases/data/dist/plasmidfinder/Rep_trans.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,668   copying staramr/databases/data/dist/plasmidfinder/config -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,672   copying staramr/databases/data/dist/plasmidfinder/enterobacteriales.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:46,680   creating build/lib/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:46,681   copying staramr/databases/data/dist/pointfinder/.gitignore -> build/lib/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:46,685   copying staramr/databases/data/dist/pointfinder/INSTALL.py -> build/lib/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:46,689   copying staramr/databases/data/dist/pointfinder/README.md -> build/lib/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:46,694   copying staramr/databases/data/dist/pointfinder/config -> build/lib/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:46,697   creating build/lib/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:46,699   copying staramr/databases/data/dist/pointfinder/campylobacter/23S.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:46,703   copying staramr/databases/data/dist/pointfinder/campylobacter/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:46,706   copying staramr/databases/data/dist/pointfinder/campylobacter/cmeR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:46,710   copying staramr/databases/data/dist/pointfinder/campylobacter/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:46,714   copying staramr/databases/data/dist/pointfinder/campylobacter/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:46,718   copying staramr/databases/data/dist/pointfinder/campylobacter/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:46,721   copying staramr/databases/data/dist/pointfinder/campylobacter/rpsL.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:46,725   creating build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:46,726   copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:46,730   copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:46,733   copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:46,737   copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:46,741   copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:46,744   creating build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:46,745   copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:46,749   copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:46,753   copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:46,756   copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:46,761   copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/pbp5.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:46,764   copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:46,768   creating build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,770   copying staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,774   copying staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,777   copying staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsH.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,781   copying staramr/databases/data/dist/pointfinder/escherichia_coli/23S.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,785   copying staramr/databases/data/dist/pointfinder/escherichia_coli/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,789   copying staramr/databases/data/dist/pointfinder/escherichia_coli/ampC_promoter_size_53bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,792   copying staramr/databases/data/dist/pointfinder/escherichia_coli/folP.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,796   copying staramr/databases/data/dist/pointfinder/escherichia_coli/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,800   copying staramr/databases/data/dist/pointfinder/escherichia_coli/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,803   copying staramr/databases/data/dist/pointfinder/escherichia_coli/gyrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,807   copying staramr/databases/data/dist/pointfinder/escherichia_coli/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,811   copying staramr/databases/data/dist/pointfinder/escherichia_coli/parE.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,815   copying staramr/databases/data/dist/pointfinder/escherichia_coli/pmrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,819   copying staramr/databases/data/dist/pointfinder/escherichia_coli/pmrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,822   copying staramr/databases/data/dist/pointfinder/escherichia_coli/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,827   copying staramr/databases/data/dist/pointfinder/escherichia_coli/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:46,831   creating build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:46,832   copying staramr/databases/data/dist/pointfinder/helicobacter_pylori/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:46,835   copying staramr/databases/data/dist/pointfinder/helicobacter_pylori/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:46,839   copying staramr/databases/data/dist/pointfinder/helicobacter_pylori/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:46,843   copying staramr/databases/data/dist/pointfinder/helicobacter_pylori/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:46,847   creating build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,849   copying staramr/databases/data/dist/pointfinder/klebsiella/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,852   copying staramr/databases/data/dist/pointfinder/klebsiella/acrR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,856   copying staramr/databases/data/dist/pointfinder/klebsiella/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,859   copying staramr/databases/data/dist/pointfinder/klebsiella/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,863   copying staramr/databases/data/dist/pointfinder/klebsiella/ompK35.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,867   copying staramr/databases/data/dist/pointfinder/klebsiella/ompK36.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,870   copying staramr/databases/data/dist/pointfinder/klebsiella/ompK37.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,874   copying staramr/databases/data/dist/pointfinder/klebsiella/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,878   copying staramr/databases/data/dist/pointfinder/klebsiella/ramR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,881   copying staramr/databases/data/dist/pointfinder/klebsiella/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:46,886   creating build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,887   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,891   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/Rv0678.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,894   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ahpC_promoter_size_180bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,898   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/alr.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,902   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/drrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,905   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/eis_promoter_size_119bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,909   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embA_promoter_size_115bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,913   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,917   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,921   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,924   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethA_promoter_size_74bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,928   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,932   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/fabG1_promoter_size_223bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,935   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/folC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,939   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,943   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gidB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,946   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,950   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,954   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/idsA2_promoter_size_181bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,957   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/inhA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,961   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/iniA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,965   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/kasA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,969   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/katG_promoter_size_107bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,973   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/nuoA_promoter_size_365bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,977   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/panD.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,981   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/pncA_promoter_size_107bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,984   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,991   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ribD.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,995   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rplC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:46,999   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,003   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,007   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,010   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsL.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,014   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrl.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,018   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrs.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,022   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,025   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyX_promoter_size_259bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,029   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/tlyA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,033   copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ubiA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:47,036   creating build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,038   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/16S_rRNA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,042   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a1.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,046   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a2.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,050   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a3.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,054   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a4.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,058   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,061   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,065   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,069   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/macAB_promoter_size_225bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,073   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrC_promoter_size_174bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,076   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrR_promoter_size_66bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,080   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,084   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/penA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,089   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/pilQ.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,093   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/ponA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,096   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/porB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,100   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,104   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsE.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,108   copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsJ.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:47,112   creating build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,113   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/CRT.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,117   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHFR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,121   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHPS.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,125   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/K13.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,129   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/MDR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,133   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/PIP.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,137   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,140   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/config -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,144   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,148   copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:47,152   creating build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,153   copying staramr/databases/data/dist/pointfinder/salmonella/16S_rrsD.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,157   copying staramr/databases/data/dist/pointfinder/salmonella/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,161   copying staramr/databases/data/dist/pointfinder/salmonella/acrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,165   copying staramr/databases/data/dist/pointfinder/salmonella/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,168   copying staramr/databases/data/dist/pointfinder/salmonella/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,172   copying staramr/databases/data/dist/pointfinder/salmonella/gyrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,176   copying staramr/databases/data/dist/pointfinder/salmonella/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,180   copying staramr/databases/data/dist/pointfinder/salmonella/parE.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,184   copying staramr/databases/data/dist/pointfinder/salmonella/pmrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,187   copying staramr/databases/data/dist/pointfinder/salmonella/pmrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,191   copying staramr/databases/data/dist/pointfinder/salmonella/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:47,195   creating build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,197   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/23S.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,201   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,204   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/dfrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,209   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/fusA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,212   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,216   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,220   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,224   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,228   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/ileS.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,232   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp2.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,236   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp4.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,240   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp4_promoter_size_304bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,243   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,248   copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:47,252   creating build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,253   copying staramr/databases/data/dist/resfinder/.gitignore -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,257   copying staramr/databases/data/dist/resfinder/CHECK-entries.sh -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,261   copying staramr/databases/data/dist/resfinder/INSTALL.py -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,265   copying staramr/databases/data/dist/resfinder/README.md -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,269   copying staramr/databases/data/dist/resfinder/aminoglycoside.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,284   copying staramr/databases/data/dist/resfinder/antibiotic_classes.txt -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,288   copying staramr/databases/data/dist/resfinder/beta-lactam.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,370   copying staramr/databases/data/dist/resfinder/colistin.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,380   copying staramr/databases/data/dist/resfinder/config -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,384   copying staramr/databases/data/dist/resfinder/disinfectant.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,390   copying staramr/databases/data/dist/resfinder/fosfomycin.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,395   copying staramr/databases/data/dist/resfinder/fusidicacid.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,400   copying staramr/databases/data/dist/resfinder/glycopeptide.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,411   copying staramr/databases/data/dist/resfinder/history.txt -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,418   copying staramr/databases/data/dist/resfinder/macrolide.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,431   copying staramr/databases/data/dist/resfinder/nitroimidazole.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,435   copying staramr/databases/data/dist/resfinder/notes.txt -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,449   copying staramr/databases/data/dist/resfinder/oxazolidinone.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,457   copying staramr/databases/data/dist/resfinder/phenicol.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,463   copying staramr/databases/data/dist/resfinder/phenotype_panels.txt -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,467   copying staramr/databases/data/dist/resfinder/phenotypes.txt -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,495   copying staramr/databases/data/dist/resfinder/pseudomonicacid.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,501   copying staramr/databases/data/dist/resfinder/quinolone.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,511   copying staramr/databases/data/dist/resfinder/rifampicin.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,516   copying staramr/databases/data/dist/resfinder/sulphonamide.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,523   copying staramr/databases/data/dist/resfinder/tetracycline.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,540   copying staramr/databases/data/dist/resfinder/trimethoprim.fsa -> build/lib/staramr/databases/data/dist/resfinder
2022-10-28T21:50:47,547   creating build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,548   copying staramr/tests/unit/data/test-Genome-Size-Exactly-Maximum.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,552   copying staramr/tests/unit/data/test-Genome-Size-Exactly-Minimum.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,556   copying staramr/tests/unit/data/test-Genome-Size-Larger-Than-Maximum.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,560   copying staramr/tests/unit/data/test-Genome-Size-Smaller-Than-Minimum.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,564   copying staramr/tests/unit/data/test-Genome-Size-Unaffected-By-Empty-Contigs.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,568   copying staramr/tests/unit/data/test-Genome-Size-Within-Accepted-Range.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,571   copying staramr/tests/unit/data/test-N50-Calculation.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,575   copying staramr/tests/unit/data/test-N50-Exactly-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,578   copying staramr/tests/unit/data/test-N50-Much-Larger-Than-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,584   copying staramr/tests/unit/data/test-N50-One-BP-Larger-Than-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,588   copying staramr/tests/unit/data/test-N50-Smaller-Than-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,592   copying staramr/tests/unit/data/test-N50-Unaffected-By-Empty-Contigs.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,596   copying staramr/tests/unit/data/test-NC-Exactly-Unacceptable.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,601   copying staramr/tests/unit/data/test-NC-One-Under-Unacceptable.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,605   copying staramr/tests/unit/data/test-NC-Unacceptable-By-Empty-Contigs.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,608   copying staramr/tests/unit/data/test-NCO-Much-Higher-Than-Unacceptable.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,615   copying staramr/tests/unit/data/test-NCO-Much-Lower-Than-Unacceptable.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,618   copying staramr/tests/unit/data/test-NCO-One-Under-Unacceptable.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,622   copying staramr/tests/unit/data/test-NCU-Exactly-Unacceptable.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,626   copying staramr/tests/unit/data/test-NCU-Much-Higher-Than-Unacceptable.fasta -> build/lib/staramr/tests/unit/data
2022-10-28T21:50:47,630   creating build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,631   copying staramr/tests/integration/data/16S-rc_gyrA-rc_beta-lactam.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,636   copying staramr/tests/integration/data/16S_gyrA_beta-lactam.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,640   copying staramr/tests/integration/data/16S_rrsD-1T1065.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,644   copying staramr/tests/integration/data/23S-A2075G.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,648   copying staramr/tests/integration/data/ahpC_promoter_size_180bp-F10I.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,652   copying staramr/tests/integration/data/ampC_promoter_size_53bp-Cn42T.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,656   copying staramr/tests/integration/data/ampC_promoter_size_53bp-n13insG.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,660   copying staramr/tests/integration/data/ampC_promoter_size_53bp-n16insGT.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,663   copying staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle-rc.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,667   copying staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,671   copying staramr/tests/integration/data/beta-lactam-blaIMP-42-del-start.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,675   copying staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-middle.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,679   copying staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-start.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,682   copying staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies-one-rev-complement.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,686   copying staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,690   copying staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,693   copying staramr/tests/integration/data/gyrA-A67P-del-end.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,697   copying staramr/tests/integration/data/gyrA-A67P-rc.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,701   copying staramr/tests/integration/data/gyrA-A67P.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,705   copying staramr/tests/integration/data/gyrA-A67T.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,709   copying staramr/tests/integration/data/gyrA-A70T.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,713   copying staramr/tests/integration/data/gyrA-S83I.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,716   copying staramr/tests/integration/data/gyrA-S83R.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,721   copying staramr/tests/integration/data/gyrA-S97N.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,724   copying staramr/tests/integration/data/mtrR_promoter_size_66bp-n57del.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,728   copying staramr/tests/integration/data/non-match.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,732   copying staramr/tests/integration/data/pbp5-ins-466.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,735   copying staramr/tests/integration/data/pbp5-ins465S.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,739   copying staramr/tests/integration/data/plasmid-underscore-brackets.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,743   copying staramr/tests/integration/data/resfinder_beta-lactam-blaIMP-42-del-middle.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,746   copying staramr/tests/integration/data/rpsE-del78gtt.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,750   copying staramr/tests/integration/data/test-aminoglycoside.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,753   copying staramr/tests/integration/data/test-detailed-summary.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,757   copying staramr/tests/integration/data/test-index-range-plasmid.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,761   copying staramr/tests/integration/data/test-mlst-summary.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,765   copying staramr/tests/integration/data/test-plasmids-seq.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,768   copying staramr/tests/integration/data/test-resfinder-correct-seq.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,773   copying staramr/tests/integration/data/test-resistance-plasmid.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,776   copying staramr/tests/integration/data/test-seq-id.fsa -> build/lib/staramr/tests/integration/data
2022-10-28T21:50:47,781   creating build/lib/staramr/tests/integration/data/gene-drug-tables
2022-10-28T21:50:47,782   copying staramr/tests/integration/data/gene-drug-tables/drug_key_pointfinder_invalid.tsv -> build/lib/staramr/tests/integration/data/gene-drug-tables
2022-10-28T21:50:47,786   copying staramr/tests/integration/data/gene-drug-tables/drug_key_resfinder_invalid.tsv -> build/lib/staramr/tests/integration/data/gene-drug-tables
2022-10-28T21:50:47,789   creating build/lib/staramr/databases/exclude/data
2022-10-28T21:50:47,791   copying staramr/databases/exclude/data/genes_to_exclude.tsv -> build/lib/staramr/databases/exclude/data
2022-10-28T21:50:47,795   creating build/lib/staramr/databases/resistance/data
2022-10-28T21:50:47,796   copying staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv -> build/lib/staramr/databases/resistance/data
2022-10-28T21:50:47,800   copying staramr/databases/resistance/data/ARG_drug_key_resfinder.tsv -> build/lib/staramr/databases/resistance/data
2022-10-28T21:50:47,814   copying staramr/databases/resistance/data/info.ini -> build/lib/staramr/databases/resistance/data
2022-10-28T21:50:47,856   running build_scripts
2022-10-28T21:50:47,856   creating build/scripts-3.7
2022-10-28T21:50:47,859   copying and adjusting bin/staramr -> build/scripts-3.7
2022-10-28T21:50:47,861   changing mode of build/scripts-3.7/staramr from 644 to 755
2022-10-28T21:50:47,916   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-10-28T21:50:47,916     setuptools.SetuptoolsDeprecationWarning,
2022-10-28T21:50:47,967   installing to build/bdist.linux-armv7l/wheel
2022-10-28T21:50:47,968   running install
2022-10-28T21:50:48,031   running install_lib
2022-10-28T21:50:48,084   creating build/bdist.linux-armv7l
2022-10-28T21:50:48,085   creating build/bdist.linux-armv7l/wheel
2022-10-28T21:50:48,088   creating build/bdist.linux-armv7l/wheel/staramr
2022-10-28T21:50:48,091   creating build/bdist.linux-armv7l/wheel/staramr/detection
2022-10-28T21:50:48,093   copying build/lib/staramr/detection/AMRDetectionFactory.py -> build/bdist.linux-armv7l/wheel/staramr/detection
2022-10-28T21:50:48,097   copying build/lib/staramr/detection/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/detection
2022-10-28T21:50:48,100   copying build/lib/staramr/detection/AMRDetection.py -> build/bdist.linux-armv7l/wheel/staramr/detection
2022-10-28T21:50:48,105   copying build/lib/staramr/detection/AMRDetectionResistance.py -> build/bdist.linux-armv7l/wheel/staramr/detection
2022-10-28T21:50:48,111   creating build/bdist.linux-armv7l/wheel/staramr/subcommand
2022-10-28T21:50:48,112   copying build/lib/staramr/subcommand/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/subcommand
2022-10-28T21:50:48,115   copying build/lib/staramr/subcommand/Database.py -> build/bdist.linux-armv7l/wheel/staramr/subcommand
2022-10-28T21:50:48,120   copying build/lib/staramr/subcommand/Search.py -> build/bdist.linux-armv7l/wheel/staramr/subcommand
2022-10-28T21:50:48,126   copying build/lib/staramr/__init__.py -> build/bdist.linux-armv7l/wheel/staramr
2022-10-28T21:50:48,131   creating build/bdist.linux-armv7l/wheel/staramr/blast
2022-10-28T21:50:48,132   copying build/lib/staramr/blast/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast
2022-10-28T21:50:48,137   creating build/bdist.linux-armv7l/wheel/staramr/blast/pointfinder
2022-10-28T21:50:48,139   copying build/lib/staramr/blast/pointfinder/PointfinderDatabaseInfo.py -> build/bdist.linux-armv7l/wheel/staramr/blast/pointfinder
2022-10-28T21:50:48,143   copying build/lib/staramr/blast/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/pointfinder
2022-10-28T21:50:48,146   copying build/lib/staramr/blast/pointfinder/PointfinderBlastDatabase.py -> build/bdist.linux-armv7l/wheel/staramr/blast/pointfinder
2022-10-28T21:50:48,150   copying build/lib/staramr/blast/JobHandler.py -> build/bdist.linux-armv7l/wheel/staramr/blast
2022-10-28T21:50:48,155   creating build/bdist.linux-armv7l/wheel/staramr/blast/plasmidfinder
2022-10-28T21:50:48,156   copying build/lib/staramr/blast/plasmidfinder/PlasmidfinderBlastDatabase.py -> build/bdist.linux-armv7l/wheel/staramr/blast/plasmidfinder
2022-10-28T21:50:48,160   copying build/lib/staramr/blast/plasmidfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/plasmidfinder
2022-10-28T21:50:48,163   copying build/lib/staramr/blast/AbstractBlastDatabase.py -> build/bdist.linux-armv7l/wheel/staramr/blast
2022-10-28T21:50:48,168   creating build/bdist.linux-armv7l/wheel/staramr/blast/results
2022-10-28T21:50:48,169   copying build/lib/staramr/blast/results/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results
2022-10-28T21:50:48,173   creating build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder
2022-10-28T21:50:48,175   copying build/lib/staramr/blast/results/pointfinder/BlastResultsParserPointfinderResistance.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder
2022-10-28T21:50:48,179   copying build/lib/staramr/blast/results/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder
2022-10-28T21:50:48,181   copying build/lib/staramr/blast/results/pointfinder/BlastResultsParserPointfinder.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder
2022-10-28T21:50:48,186   creating build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:48,188   copying build/lib/staramr/blast/results/pointfinder/nucleotide/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:48,191   copying build/lib/staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPRNA.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:48,194   copying build/lib/staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPPromoter.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:48,198   copying build/lib/staramr/blast/results/pointfinder/nucleotide/NucleotideMutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/nucleotide
2022-10-28T21:50:48,202   creating build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/codon
2022-10-28T21:50:48,203   copying build/lib/staramr/blast/results/pointfinder/codon/CodonMutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/codon
2022-10-28T21:50:48,208   copying build/lib/staramr/blast/results/pointfinder/codon/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/codon
2022-10-28T21:50:48,211   copying build/lib/staramr/blast/results/pointfinder/codon/CodonInsertionPosition.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/codon
2022-10-28T21:50:48,214   copying build/lib/staramr/blast/results/pointfinder/MutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder
2022-10-28T21:50:48,218   copying build/lib/staramr/blast/results/pointfinder/PointfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder
2022-10-28T21:50:48,222   creating build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder
2022-10-28T21:50:48,224   copying build/lib/staramr/blast/results/plasmidfinder/PlasmidfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder
2022-10-28T21:50:48,227   copying build/lib/staramr/blast/results/plasmidfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder
2022-10-28T21:50:48,230   copying build/lib/staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinderResistance.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder
2022-10-28T21:50:48,234   copying build/lib/staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinder.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder
2022-10-28T21:50:48,237   copying build/lib/staramr/blast/results/AMRHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results
2022-10-28T21:50:48,241   copying build/lib/staramr/blast/results/BlastHitPartitions.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results
2022-10-28T21:50:48,244   copying build/lib/staramr/blast/results/BlastResultsParser.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results
2022-10-28T21:50:48,249   creating build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder
2022-10-28T21:50:48,251   copying build/lib/staramr/blast/results/resfinder/BlastResultsParserResfinder.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder
2022-10-28T21:50:48,254   copying build/lib/staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder
2022-10-28T21:50:48,258   copying build/lib/staramr/blast/results/resfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder
2022-10-28T21:50:48,261   copying build/lib/staramr/blast/results/resfinder/ResfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder
2022-10-28T21:50:48,265   creating build/bdist.linux-armv7l/wheel/staramr/blast/resfinder
2022-10-28T21:50:48,266   copying build/lib/staramr/blast/resfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/resfinder
2022-10-28T21:50:48,270   copying build/lib/staramr/blast/resfinder/ResfinderBlastDatabase.py -> build/bdist.linux-armv7l/wheel/staramr/blast/resfinder
2022-10-28T21:50:48,273   copying build/lib/staramr/Utils.py -> build/bdist.linux-armv7l/wheel/staramr
2022-10-28T21:50:48,276   copying build/lib/staramr/SubCommand.py -> build/bdist.linux-armv7l/wheel/staramr
2022-10-28T21:50:48,281   creating build/bdist.linux-armv7l/wheel/staramr/tests
2022-10-28T21:50:48,283   creating build/bdist.linux-armv7l/wheel/staramr/tests/unit
2022-10-28T21:50:48,287   creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,288   copying build/lib/staramr/tests/unit/data/test-NC-One-Under-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,292   copying build/lib/staramr/tests/unit/data/test-N50-Much-Larger-Than-Minimum-Value.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,296   copying build/lib/staramr/tests/unit/data/test-NC-Exactly-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,299   copying build/lib/staramr/tests/unit/data/test-N50-One-BP-Larger-Than-Minimum-Value.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,302   copying build/lib/staramr/tests/unit/data/test-N50-Exactly-Minimum-Value.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,306   copying build/lib/staramr/tests/unit/data/test-NCU-Exactly-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,309   copying build/lib/staramr/tests/unit/data/test-Genome-Size-Unaffected-By-Empty-Contigs.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,313   copying build/lib/staramr/tests/unit/data/test-Genome-Size-Exactly-Maximum.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,316   copying build/lib/staramr/tests/unit/data/test-N50-Smaller-Than-Minimum-Value.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,319   copying build/lib/staramr/tests/unit/data/test-N50-Unaffected-By-Empty-Contigs.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,322   copying build/lib/staramr/tests/unit/data/test-Genome-Size-Exactly-Minimum.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,326   copying build/lib/staramr/tests/unit/data/test-NCO-Much-Lower-Than-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,329   copying build/lib/staramr/tests/unit/data/test-NCU-Much-Higher-Than-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,332   copying build/lib/staramr/tests/unit/data/test-Genome-Size-Larger-Than-Maximum.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,335   copying build/lib/staramr/tests/unit/data/test-Genome-Size-Smaller-Than-Minimum.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,339   copying build/lib/staramr/tests/unit/data/test-N50-Calculation.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,342   copying build/lib/staramr/tests/unit/data/test-NCO-One-Under-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,345   copying build/lib/staramr/tests/unit/data/test-NC-Unacceptable-By-Empty-Contigs.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,349   copying build/lib/staramr/tests/unit/data/test-NCO-Much-Higher-Than-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,356   copying build/lib/staramr/tests/unit/data/test-Genome-Size-Within-Accepted-Range.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data
2022-10-28T21:50:48,359   copying build/lib/staramr/tests/unit/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit
2022-10-28T21:50:48,363   creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast
2022-10-28T21:50:48,364   copying build/lib/staramr/tests/unit/blast/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast
2022-10-28T21:50:48,368   creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/pointfinder
2022-10-28T21:50:48,370   copying build/lib/staramr/tests/unit/blast/pointfinder/test_PointfinderDatabaseInfo.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/pointfinder
2022-10-28T21:50:48,374   copying build/lib/staramr/tests/unit/blast/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/pointfinder
2022-10-28T21:50:48,378   creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results
2022-10-28T21:50:48,380   copying build/lib/staramr/tests/unit/blast/results/test_BlastHitPartitions.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results
2022-10-28T21:50:48,385   copying build/lib/staramr/tests/unit/blast/results/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results
2022-10-28T21:50:48,389   creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder
2022-10-28T21:50:48,391   copying build/lib/staramr/tests/unit/blast/results/pointfinder/test_PointfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder
2022-10-28T21:50:48,395   copying build/lib/staramr/tests/unit/blast/results/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder
2022-10-28T21:50:48,399   creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/nucleotide
2022-10-28T21:50:48,401   copying build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/nucleotide
2022-10-28T21:50:48,404   copying build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide/test_NucleotideMutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/nucleotide
2022-10-28T21:50:48,409   creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/codon
2022-10-28T21:50:48,411   copying build/lib/staramr/tests/unit/blast/results/pointfinder/codon/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/codon
2022-10-28T21:50:48,414   copying build/lib/staramr/tests/unit/blast/results/pointfinder/codon/test_CodonMutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/codon
2022-10-28T21:50:48,419   copying build/lib/staramr/tests/unit/blast/results/pointfinder/test_PlasmidfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder
2022-10-28T21:50:48,424   creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/results
2022-10-28T21:50:48,425   copying build/lib/staramr/tests/unit/results/test_QualityModule.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/results
2022-10-28T21:50:48,431   copying build/lib/staramr/tests/unit/results/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/results
2022-10-28T21:50:48,434   copying build/lib/staramr/tests/unit/results/test_AMRDetectionSummary.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/results
2022-10-28T21:50:48,439   copying build/lib/staramr/tests/unit/results/test_AMRDetectionSummaryResistance.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/results
2022-10-28T21:50:48,443   copying build/lib/staramr/tests/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests
2022-10-28T21:50:48,447   creating build/bdist.linux-armv7l/wheel/staramr/tests/integration
2022-10-28T21:50:48,449   creating build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection
2022-10-28T21:50:48,451   copying build/lib/staramr/tests/integration/detection/test_AMRDetection.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection
2022-10-28T21:50:48,459   copying build/lib/staramr/tests/integration/detection/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection
2022-10-28T21:50:48,462   copying build/lib/staramr/tests/integration/detection/test_AMRDetectionMLST.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection
2022-10-28T21:50:48,466   copying build/lib/staramr/tests/integration/detection/test_AMRDetectionPlasmid.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection
2022-10-28T21:50:48,473   creating build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,474   copying build/lib/staramr/tests/integration/data/ampC_promoter_size_53bp-n13insG.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,478   copying build/lib/staramr/tests/integration/data/test-aminoglycoside.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,481   copying build/lib/staramr/tests/integration/data/mtrR_promoter_size_66bp-n57del.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,484   copying build/lib/staramr/tests/integration/data/gyrA-A67T.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,487   copying build/lib/staramr/tests/integration/data/gyrA-A70T.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,491   copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,494   copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,497   copying build/lib/staramr/tests/integration/data/test-resistance-plasmid.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,500   copying build/lib/staramr/tests/integration/data/ahpC_promoter_size_180bp-F10I.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,503   copying build/lib/staramr/tests/integration/data/16S_rrsD-1T1065.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,506   copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-start.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,510   copying build/lib/staramr/tests/integration/data/gyrA-A67P-del-end.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,513   copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-middle.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,516   copying build/lib/staramr/tests/integration/data/pbp5-ins465S.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,520   copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies-one-rev-complement.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,523   copying build/lib/staramr/tests/integration/data/test-seq-id.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,526   copying build/lib/staramr/tests/integration/data/gyrA-A67P.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,530   copying build/lib/staramr/tests/integration/data/23S-A2075G.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,533   copying build/lib/staramr/tests/integration/data/pbp5-ins-466.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,536   copying build/lib/staramr/tests/integration/data/16S_gyrA_beta-lactam.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,540   copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-del-start.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,543   copying build/lib/staramr/tests/integration/data/test-detailed-summary.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,546   copying build/lib/staramr/tests/integration/data/ampC_promoter_size_53bp-n16insGT.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,549   copying build/lib/staramr/tests/integration/data/gyrA-S83R.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,552   copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,556   copying build/lib/staramr/tests/integration/data/test-resfinder-correct-seq.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,560   copying build/lib/staramr/tests/integration/data/gyrA-A67P-rc.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,563   copying build/lib/staramr/tests/integration/data/test-index-range-plasmid.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,566   copying build/lib/staramr/tests/integration/data/test-plasmids-seq.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,569   copying build/lib/staramr/tests/integration/data/resfinder_beta-lactam-blaIMP-42-del-middle.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,572   copying build/lib/staramr/tests/integration/data/non-match.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,576   copying build/lib/staramr/tests/integration/data/test-mlst-summary.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,580   creating build/bdist.linux-armv7l/wheel/staramr/tests/integration/data/gene-drug-tables
2022-10-28T21:50:48,582   copying build/lib/staramr/tests/integration/data/gene-drug-tables/drug_key_pointfinder_invalid.tsv -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data/gene-drug-tables
2022-10-28T21:50:48,585   copying build/lib/staramr/tests/integration/data/gene-drug-tables/drug_key_resfinder_invalid.tsv -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data/gene-drug-tables
2022-10-28T21:50:48,588   copying build/lib/staramr/tests/integration/data/gyrA-S83I.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,592   copying build/lib/staramr/tests/integration/data/rpsE-del78gtt.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,595   copying build/lib/staramr/tests/integration/data/plasmid-underscore-brackets.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,599   copying build/lib/staramr/tests/integration/data/ampC_promoter_size_53bp-Cn42T.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,602   copying build/lib/staramr/tests/integration/data/gyrA-S97N.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,605   copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle-rc.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,608   copying build/lib/staramr/tests/integration/data/16S-rc_gyrA-rc_beta-lactam.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data
2022-10-28T21:50:48,612   copying build/lib/staramr/tests/integration/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration
2022-10-28T21:50:48,616   creating build/bdist.linux-armv7l/wheel/staramr/tests/integration/databases
2022-10-28T21:50:48,618   copying build/lib/staramr/tests/integration/databases/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/databases
2022-10-28T21:50:48,621   copying build/lib/staramr/tests/integration/databases/test_BlastDatabaseRepositories.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/databases
2022-10-28T21:50:48,625   copying build/lib/staramr/tests/integration/databases/test_AMRDatabasesManager.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/databases
2022-10-28T21:50:48,630   creating build/bdist.linux-armv7l/wheel/staramr/databases
2022-10-28T21:50:48,632   creating build/bdist.linux-armv7l/wheel/staramr/databases/exclude
2022-10-28T21:50:48,634   copying build/lib/staramr/databases/exclude/ExcludeGenesList.py -> build/bdist.linux-armv7l/wheel/staramr/databases/exclude
2022-10-28T21:50:48,638   creating build/bdist.linux-armv7l/wheel/staramr/databases/exclude/data
2022-10-28T21:50:48,639   copying build/lib/staramr/databases/exclude/data/genes_to_exclude.tsv -> build/bdist.linux-armv7l/wheel/staramr/databases/exclude/data
2022-10-28T21:50:48,643   copying build/lib/staramr/databases/exclude/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases/exclude
2022-10-28T21:50:48,647   creating build/bdist.linux-armv7l/wheel/staramr/databases/data
2022-10-28T21:50:48,649   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist
2022-10-28T21:50:48,653   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:48,655   copying build/lib/staramr/databases/data/dist/pointfinder/.gitignore -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:48,660   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:48,661   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:48,665   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:48,668   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:48,671   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:48,675   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis
2022-10-28T21:50:48,679   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,681   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/ompK37.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,684   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/ompK36.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,688   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/acrR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,691   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,693   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/ompK35.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,697   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/ramR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,700   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,704   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,709   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,712   copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella
2022-10-28T21:50:48,717   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,719   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/macAB_promoter_size_225bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,722   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a4.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,726   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/penA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,729   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a2.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,732   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrC_promoter_size_174bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,736   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,739   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrR_promoter_size_66bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,742   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsJ.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,745   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a1.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,749   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/16S_rRNA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,752   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/pilQ.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,755   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsE.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,759   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/ponA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,762   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,766   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,769   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,773   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,776   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a3.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,779   copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/porB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae
2022-10-28T21:50:48,783   copying build/lib/staramr/databases/data/dist/pointfinder/config -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:48,787   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:48,789   copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/23S.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:48,792   copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/cmeR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:48,795   copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/rpsL.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:48,799   copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:48,802   copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:48,805   copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:48,809   copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter
2022-10-28T21:50:48,813   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:48,814   copying build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori/rpoB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:48,819   copying build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:48,821   copying build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:48,824   copying build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori
2022-10-28T21:50:48,828   copying build/lib/staramr/databases/data/dist/pointfinder/README.md -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:48,833   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,834   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/MDR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,839   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/config -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,842   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,844   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/K13.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,848   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHPS.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,851   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/CRT.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,854   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHFR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,858   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,861   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,864   copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/PIP.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum
2022-10-28T21:50:48,868   copying build/lib/staramr/databases/data/dist/pointfinder/INSTALL.py -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder
2022-10-28T21:50:48,873   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,874   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/23S.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,879   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/rpoB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,882   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/gyrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,886   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,889   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/folP.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,893   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/parE.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,896   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsH.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,900   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/ampC_promoter_size_53bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,903   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/pmrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,906   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/pmrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,910   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,913   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,916   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,921   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,924   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,927   copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli
2022-10-28T21:50:48,932   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,933   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/16S_rrsD.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,937   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/gyrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,940   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,944   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/parE.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,947   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/pmrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,950   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/pmrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,953   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,957   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,961   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,964   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,967   copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/acrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella
2022-10-28T21:50:48,972   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:48,973   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:48,976   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/pbp5.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:48,980   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:48,983   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:48,986   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:48,990   copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium
2022-10-28T21:50:48,994   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:48,995   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:48,999   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/23S.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,003   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/rpoB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,006   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,009   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,012   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/dfrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,016   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/fusA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,019   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp4_promoter_size_304bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,022   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/ileS.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,026   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp2.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,029   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,033   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,038   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp4.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,042   copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus
2022-10-28T21:50:49,048   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,050   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gidB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,054   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/iniA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,058   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,062   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,066   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,070   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,074   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,078   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/drrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,082   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,086   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embA_promoter_size_115bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,090   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrl.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,094   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,098   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsL.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,102   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/katG_promoter_size_107bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,106   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rplC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,110   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/nuoA_promoter_size_365bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,114   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,118   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ubiA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,122   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,126   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/eis_promoter_size_119bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,130   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/idsA2_promoter_size_181bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,134   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/inhA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,138   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ahpC_promoter_size_180bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,142   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyX_promoter_size_259bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,146   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/alr.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,150   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/pncA_promoter_size_107bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,153   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,157   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/fabG1_promoter_size_223bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,161   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/folC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,165   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethA_promoter_size_74bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,170   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrs.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,174   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,178   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,185   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/Rv0678.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,189   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,193   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/panD.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,197   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/tlyA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,201   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/kasA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,205   copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ribD.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis
2022-10-28T21:50:49,209   copying build/lib/staramr/databases/data/dist/pointfinder-info.ini -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist
2022-10-28T21:50:49,213   copying build/lib/staramr/databases/data/dist/plasmidfinder-info.ini -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist
2022-10-28T21:50:49,219   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,221   copying build/lib/staramr/databases/data/dist/plasmidfinder/.gitignore -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,225   copying build/lib/staramr/databases/data/dist/plasmidfinder/config -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,229   copying build/lib/staramr/databases/data/dist/plasmidfinder/RepA_N.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,237   copying build/lib/staramr/databases/data/dist/plasmidfinder/Rep_trans.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,243   copying build/lib/staramr/databases/data/dist/plasmidfinder/INSTALL.py -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,246   copying build/lib/staramr/databases/data/dist/plasmidfinder/RepL.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,250   copying build/lib/staramr/databases/data/dist/plasmidfinder/Rep3.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,256   copying build/lib/staramr/databases/data/dist/plasmidfinder/Rep2.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,262   copying build/lib/staramr/databases/data/dist/plasmidfinder/Inc18.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,269   copying build/lib/staramr/databases/data/dist/plasmidfinder/enterobacteriales.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,276   copying build/lib/staramr/databases/data/dist/plasmidfinder/NT_Rep.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,281   copying build/lib/staramr/databases/data/dist/plasmidfinder/Rep1.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder
2022-10-28T21:50:49,289   copying build/lib/staramr/databases/data/dist/resfinder-info.ini -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist
2022-10-28T21:50:49,295   creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,297   copying build/lib/staramr/databases/data/dist/resfinder/.gitignore -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,301   copying build/lib/staramr/databases/data/dist/resfinder/fosfomycin.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,307   copying build/lib/staramr/databases/data/dist/resfinder/tetracycline.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,324   copying build/lib/staramr/databases/data/dist/resfinder/CHECK-entries.sh -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,328   copying build/lib/staramr/databases/data/dist/resfinder/phenotypes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,355   copying build/lib/staramr/databases/data/dist/resfinder/config -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,358   copying build/lib/staramr/databases/data/dist/resfinder/beta-lactam.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,452   copying build/lib/staramr/databases/data/dist/resfinder/phenicol.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,458   copying build/lib/staramr/databases/data/dist/resfinder/antibiotic_classes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,461   copying build/lib/staramr/databases/data/dist/resfinder/glycopeptide.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,474   copying build/lib/staramr/databases/data/dist/resfinder/README.md -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,478   copying build/lib/staramr/databases/data/dist/resfinder/macrolide.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,491   copying build/lib/staramr/databases/data/dist/resfinder/phenotype_panels.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,494   copying build/lib/staramr/databases/data/dist/resfinder/notes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,502   copying build/lib/staramr/databases/data/dist/resfinder/nitroimidazole.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,506   copying build/lib/staramr/databases/data/dist/resfinder/trimethoprim.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,513   copying build/lib/staramr/databases/data/dist/resfinder/oxazolidinone.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,520   copying build/lib/staramr/databases/data/dist/resfinder/INSTALL.py -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,523   copying build/lib/staramr/databases/data/dist/resfinder/quinolone.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,532   copying build/lib/staramr/databases/data/dist/resfinder/sulphonamide.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,538   copying build/lib/staramr/databases/data/dist/resfinder/disinfectant.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,543   copying build/lib/staramr/databases/data/dist/resfinder/pseudomonicacid.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,547   copying build/lib/staramr/databases/data/dist/resfinder/colistin.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,556   copying build/lib/staramr/databases/data/dist/resfinder/history.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,561   copying build/lib/staramr/databases/data/dist/resfinder/fusidicacid.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,565   copying build/lib/staramr/databases/data/dist/resfinder/rifampicin.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,569   copying build/lib/staramr/databases/data/dist/resfinder/aminoglycoside.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder
2022-10-28T21:50:49,583   copying build/lib/staramr/databases/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases
2022-10-28T21:50:49,586   copying build/lib/staramr/databases/BlastDatabaseRepositories.py -> build/bdist.linux-armv7l/wheel/staramr/databases
2022-10-28T21:50:49,590   copying build/lib/staramr/databases/AMRDatabasesManager.py -> build/bdist.linux-armv7l/wheel/staramr/databases
2022-10-28T21:50:49,594   copying build/lib/staramr/databases/BlastDatabaseRepository.py -> build/bdist.linux-armv7l/wheel/staramr/databases
2022-10-28T21:50:49,599   creating build/bdist.linux-armv7l/wheel/staramr/databases/resistance
2022-10-28T21:50:49,601   creating build/bdist.linux-armv7l/wheel/staramr/databases/resistance/data
2022-10-28T21:50:49,603   copying build/lib/staramr/databases/resistance/data/info.ini -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/data
2022-10-28T21:50:49,606   copying build/lib/staramr/databases/resistance/data/ARG_drug_key_resfinder.tsv -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/data
2022-10-28T21:50:49,619   copying build/lib/staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/data
2022-10-28T21:50:49,623   copying build/lib/staramr/databases/resistance/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance
2022-10-28T21:50:49,626   creating build/bdist.linux-armv7l/wheel/staramr/databases/resistance/pointfinder
2022-10-28T21:50:49,628   copying build/lib/staramr/databases/resistance/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/pointfinder
2022-10-28T21:50:49,631   copying build/lib/staramr/databases/resistance/pointfinder/ARGDrugTablePointfinder.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/pointfinder
2022-10-28T21:50:49,634   copying build/lib/staramr/databases/resistance/ARGDrugTable.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance
2022-10-28T21:50:49,638   creating build/bdist.linux-armv7l/wheel/staramr/databases/resistance/resfinder
2022-10-28T21:50:49,640   copying build/lib/staramr/databases/resistance/resfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/resfinder
2022-10-28T21:50:49,643   copying build/lib/staramr/databases/resistance/resfinder/ARGDrugTableResfinder.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/resfinder
2022-10-28T21:50:49,647   creating build/bdist.linux-armv7l/wheel/staramr/exceptions
2022-10-28T21:50:49,648   copying build/lib/staramr/exceptions/BlastProcessError.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions
2022-10-28T21:50:49,652   copying build/lib/staramr/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions
2022-10-28T21:50:49,655   copying build/lib/staramr/exceptions/GenotypePhenotypeMatchException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions
2022-10-28T21:50:49,658   copying build/lib/staramr/exceptions/InvalidPositionException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions
2022-10-28T21:50:49,661   copying build/lib/staramr/exceptions/CommandParseException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions
2022-10-28T21:50:49,665   copying build/lib/staramr/exceptions/DatabaseNotFoundException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions
2022-10-28T21:50:49,668   copying build/lib/staramr/exceptions/DatabaseErrorException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions
2022-10-28T21:50:49,672   creating build/bdist.linux-armv7l/wheel/staramr/results
2022-10-28T21:50:49,674   copying build/lib/staramr/results/AMRDetectionSummaryResistance.py -> build/bdist.linux-armv7l/wheel/staramr/results
2022-10-28T21:50:49,678   copying build/lib/staramr/results/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/results
2022-10-28T21:50:49,681   copying build/lib/staramr/results/AMRDetectionSummary.py -> build/bdist.linux-armv7l/wheel/staramr/results
2022-10-28T21:50:49,686   copying build/lib/staramr/results/QualityModule.py -> build/bdist.linux-armv7l/wheel/staramr/results
2022-10-28T21:50:49,690   running install_egg_info
2022-10-28T21:50:49,751   Copying staramr.egg-info to build/bdist.linux-armv7l/wheel/staramr-0.9.1-py3.7.egg-info
2022-10-28T21:50:49,773   running install_scripts
2022-10-28T21:50:49,896   creating build/bdist.linux-armv7l/wheel/staramr-0.9.1.data
2022-10-28T21:50:49,897   creating build/bdist.linux-armv7l/wheel/staramr-0.9.1.data/scripts
2022-10-28T21:50:49,900   copying build/scripts-3.7/staramr -> build/bdist.linux-armv7l/wheel/staramr-0.9.1.data/scripts
2022-10-28T21:50:49,903   changing mode of build/bdist.linux-armv7l/wheel/staramr-0.9.1.data/scripts/staramr to 755
2022-10-28T21:50:49,957   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-10-28T21:50:49,958   adding license file "NOTICE" (matched pattern "NOTICE*")
2022-10-28T21:50:49,969   creating build/bdist.linux-armv7l/wheel/staramr-0.9.1.dist-info/WHEEL
2022-10-28T21:50:49,973   creating '/tmp/pip-wheel-3xs8cj6e/staramr-0.9.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-10-28T21:50:49,978   adding 'staramr/SubCommand.py'
2022-10-28T21:50:49,981   adding 'staramr/Utils.py'
2022-10-28T21:50:49,983   adding 'staramr/__init__.py'
2022-10-28T21:50:49,986   adding 'staramr/blast/AbstractBlastDatabase.py'
2022-10-28T21:50:49,990   adding 'staramr/blast/JobHandler.py'
2022-10-28T21:50:49,992   adding 'staramr/blast/__init__.py'
2022-10-28T21:50:49,996   adding 'staramr/blast/plasmidfinder/PlasmidfinderBlastDatabase.py'
2022-10-28T21:50:49,998   adding 'staramr/blast/plasmidfinder/__init__.py'
2022-10-28T21:50:50,002   adding 'staramr/blast/pointfinder/PointfinderBlastDatabase.py'
2022-10-28T21:50:50,006   adding 'staramr/blast/pointfinder/PointfinderDatabaseInfo.py'
2022-10-28T21:50:50,008   adding 'staramr/blast/pointfinder/__init__.py'
2022-10-28T21:50:50,011   adding 'staramr/blast/resfinder/ResfinderBlastDatabase.py'
2022-10-28T21:50:50,013   adding 'staramr/blast/resfinder/__init__.py'
2022-10-28T21:50:50,017   adding 'staramr/blast/results/AMRHitHSP.py'
2022-10-28T21:50:50,020   adding 'staramr/blast/results/BlastHitPartitions.py'
2022-10-28T21:50:50,023   adding 'staramr/blast/results/BlastResultsParser.py'
2022-10-28T21:50:50,025   adding 'staramr/blast/results/__init__.py'
2022-10-28T21:50:50,029   adding 'staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinder.py'
2022-10-28T21:50:50,031   adding 'staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinderResistance.py'
2022-10-28T21:50:50,034   adding 'staramr/blast/results/plasmidfinder/PlasmidfinderHitHSP.py'
2022-10-28T21:50:50,036   adding 'staramr/blast/results/plasmidfinder/__init__.py'
2022-10-28T21:50:50,040   adding 'staramr/blast/results/pointfinder/BlastResultsParserPointfinder.py'
2022-10-28T21:50:50,042   adding 'staramr/blast/results/pointfinder/BlastResultsParserPointfinderResistance.py'
2022-10-28T21:50:50,045   adding 'staramr/blast/results/pointfinder/MutationPosition.py'
2022-10-28T21:50:50,047   adding 'staramr/blast/results/pointfinder/PointfinderHitHSP.py'
2022-10-28T21:50:50,049   adding 'staramr/blast/results/pointfinder/__init__.py'
2022-10-28T21:50:50,053   adding 'staramr/blast/results/pointfinder/codon/CodonInsertionPosition.py'
2022-10-28T21:50:50,056   adding 'staramr/blast/results/pointfinder/codon/CodonMutationPosition.py'
2022-10-28T21:50:50,058   adding 'staramr/blast/results/pointfinder/codon/__init__.py'
2022-10-28T21:50:50,061   adding 'staramr/blast/results/pointfinder/nucleotide/NucleotideMutationPosition.py'
2022-10-28T21:50:50,064   adding 'staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPPromoter.py'
2022-10-28T21:50:50,067   adding 'staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPRNA.py'
2022-10-28T21:50:50,069   adding 'staramr/blast/results/pointfinder/nucleotide/__init__.py'
2022-10-28T21:50:50,072   adding 'staramr/blast/results/resfinder/BlastResultsParserResfinder.py'
2022-10-28T21:50:50,075   adding 'staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py'
2022-10-28T21:50:50,077   adding 'staramr/blast/results/resfinder/ResfinderHitHSP.py'
2022-10-28T21:50:50,079   adding 'staramr/blast/results/resfinder/__init__.py'
2022-10-28T21:50:50,083   adding 'staramr/databases/AMRDatabasesManager.py'
2022-10-28T21:50:50,086   adding 'staramr/databases/BlastDatabaseRepositories.py'
2022-10-28T21:50:50,090   adding 'staramr/databases/BlastDatabaseRepository.py'
2022-10-28T21:50:50,092   adding 'staramr/databases/__init__.py'
2022-10-28T21:50:50,096   adding 'staramr/databases/data/dist/plasmidfinder-info.ini'
2022-10-28T21:50:50,098   adding 'staramr/databases/data/dist/pointfinder-info.ini'
2022-10-28T21:50:50,100   adding 'staramr/databases/data/dist/resfinder-info.ini'
2022-10-28T21:50:50,104   adding 'staramr/databases/data/dist/plasmidfinder/.gitignore'
2022-10-28T21:50:50,106   adding 'staramr/databases/data/dist/plasmidfinder/INSTALL.py'
2022-10-28T21:50:50,152   adding 'staramr/databases/data/dist/plasmidfinder/Inc18.fsa'
2022-10-28T21:50:50,162   adding 'staramr/databases/data/dist/plasmidfinder/NT_Rep.fsa'
2022-10-28T21:50:50,201   adding 'staramr/databases/data/dist/plasmidfinder/Rep1.fsa'
2022-10-28T21:50:50,215   adding 'staramr/databases/data/dist/plasmidfinder/Rep2.fsa'
2022-10-28T21:50:50,263   adding 'staramr/databases/data/dist/plasmidfinder/Rep3.fsa'
2022-10-28T21:50:50,317   adding 'staramr/databases/data/dist/plasmidfinder/RepA_N.fsa'
2022-10-28T21:50:50,323   adding 'staramr/databases/data/dist/plasmidfinder/RepL.fsa'
2022-10-28T21:50:50,344   adding 'staramr/databases/data/dist/plasmidfinder/Rep_trans.fsa'
2022-10-28T21:50:50,348   adding 'staramr/databases/data/dist/plasmidfinder/config'
2022-10-28T21:50:50,432   adding 'staramr/databases/data/dist/plasmidfinder/enterobacteriales.fsa'
2022-10-28T21:50:50,437   adding 'staramr/databases/data/dist/pointfinder/.gitignore'
2022-10-28T21:50:50,441   adding 'staramr/databases/data/dist/pointfinder/INSTALL.py'
2022-10-28T21:50:50,445   adding 'staramr/databases/data/dist/pointfinder/README.md'
2022-10-28T21:50:50,447   adding 'staramr/databases/data/dist/pointfinder/config'
2022-10-28T21:50:50,452   adding 'staramr/databases/data/dist/pointfinder/campylobacter/23S.fsa'
2022-10-28T21:50:50,454   adding 'staramr/databases/data/dist/pointfinder/campylobacter/RNA_genes.txt'
2022-10-28T21:50:50,456   adding 'staramr/databases/data/dist/pointfinder/campylobacter/cmeR.fsa'
2022-10-28T21:50:50,459   adding 'staramr/databases/data/dist/pointfinder/campylobacter/genes.txt'
2022-10-28T21:50:50,462   adding 'staramr/databases/data/dist/pointfinder/campylobacter/gyrA.fsa'
2022-10-28T21:50:50,464   adding 'staramr/databases/data/dist/pointfinder/campylobacter/resistens-overview.txt'
2022-10-28T21:50:50,467   adding 'staramr/databases/data/dist/pointfinder/campylobacter/rpsL.fsa'
2022-10-28T21:50:50,470   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecalis/RNA_genes.txt'
2022-10-28T21:50:50,472   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecalis/genes.txt'
2022-10-28T21:50:50,475   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecalis/gyrA.fsa'
2022-10-28T21:50:50,478   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecalis/parC.fsa'
2022-10-28T21:50:50,481   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecalis/resistens-overview.txt'
2022-10-28T21:50:50,484   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecium/RNA_genes.txt'
2022-10-28T21:50:50,486   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecium/genes.txt'
2022-10-28T21:50:50,489   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecium/gyrA.fsa'
2022-10-28T21:50:50,493   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecium/parC.fsa'
2022-10-28T21:50:50,496   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecium/pbp5.fsa'
2022-10-28T21:50:50,498   adding 'staramr/databases/data/dist/pointfinder/enterococcus_faecium/resistens-overview.txt'
2022-10-28T21:50:50,502   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsB.fsa'
2022-10-28T21:50:50,505   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsC.fsa'
2022-10-28T21:50:50,507   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsH.fsa'
2022-10-28T21:50:50,511   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/23S.fsa'
2022-10-28T21:50:50,513   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/RNA_genes.txt'
2022-10-28T21:50:50,515   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/ampC_promoter_size_53bp.fsa'
2022-10-28T21:50:50,518   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/folP.fsa'
2022-10-28T21:50:50,520   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/genes.txt'
2022-10-28T21:50:50,523   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/gyrA.fsa'
2022-10-28T21:50:50,526   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/gyrB.fsa'
2022-10-28T21:50:50,529   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/parC.fsa'
2022-10-28T21:50:50,532   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/parE.fsa'
2022-10-28T21:50:50,534   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/pmrA.fsa'
2022-10-28T21:50:50,537   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/pmrB.fsa'
2022-10-28T21:50:50,540   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/resistens-overview.txt'
2022-10-28T21:50:50,545   adding 'staramr/databases/data/dist/pointfinder/escherichia_coli/rpoB.fsa'
2022-10-28T21:50:50,548   adding 'staramr/databases/data/dist/pointfinder/helicobacter_pylori/RNA_genes.txt'
2022-10-28T21:50:50,550   adding 'staramr/databases/data/dist/pointfinder/helicobacter_pylori/genes.txt'
2022-10-28T21:50:50,552   adding 'staramr/databases/data/dist/pointfinder/helicobacter_pylori/resistens-overview.txt'
2022-10-28T21:50:50,562   adding 'staramr/databases/data/dist/pointfinder/helicobacter_pylori/rpoB.fsa'
2022-10-28T21:50:50,565   adding 'staramr/databases/data/dist/pointfinder/klebsiella/RNA_genes.txt'
2022-10-28T21:50:50,567   adding 'staramr/databases/data/dist/pointfinder/klebsiella/acrR.fsa'
2022-10-28T21:50:50,570   adding 'staramr/databases/data/dist/pointfinder/klebsiella/genes.txt'
2022-10-28T21:50:50,573   adding 'staramr/databases/data/dist/pointfinder/klebsiella/gyrA.fsa'
2022-10-28T21:50:50,575   adding 'staramr/databases/data/dist/pointfinder/klebsiella/ompK35.fsa'
2022-10-28T21:50:50,578   adding 'staramr/databases/data/dist/pointfinder/klebsiella/ompK36.fsa'
2022-10-28T21:50:50,580   adding 'staramr/databases/data/dist/pointfinder/klebsiella/ompK37.fsa'
2022-10-28T21:50:50,583   adding 'staramr/databases/data/dist/pointfinder/klebsiella/parC.fsa'
2022-10-28T21:50:50,586   adding 'staramr/databases/data/dist/pointfinder/klebsiella/ramR.fsa'
2022-10-28T21:50:50,589   adding 'staramr/databases/data/dist/pointfinder/klebsiella/resistens-overview.txt'
2022-10-28T21:50:50,594   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/RNA_genes.txt'
2022-10-28T21:50:50,596   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/Rv0678.fsa'
2022-10-28T21:50:50,598   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ahpC_promoter_size_180bp.fsa'
2022-10-28T21:50:50,601   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/alr.fsa'
2022-10-28T21:50:50,603   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/drrA.fsa'
2022-10-28T21:50:50,606   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/eis_promoter_size_119bp.fsa'
2022-10-28T21:50:50,610   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embA_promoter_size_115bp.fsa'
2022-10-28T21:50:50,614   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embB.fsa'
2022-10-28T21:50:50,618   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embC.fsa'
2022-10-28T21:50:50,621   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embR.fsa'
2022-10-28T21:50:50,623   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethA_promoter_size_74bp.fsa'
2022-10-28T21:50:50,625   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethR.fsa'
2022-10-28T21:50:50,628   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/fabG1_promoter_size_223bp.fsa'
2022-10-28T21:50:50,630   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/folC.fsa'
2022-10-28T21:50:50,633   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/genes.txt'
2022-10-28T21:50:50,635   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gidB.fsa'
2022-10-28T21:50:50,638   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrA.fsa'
2022-10-28T21:50:50,641   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrB.fsa'
2022-10-28T21:50:50,644   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/idsA2_promoter_size_181bp.fsa'
2022-10-28T21:50:50,648   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/inhA.fsa'
2022-10-28T21:50:50,651   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/iniA.fsa'
2022-10-28T21:50:50,654   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/kasA.fsa'
2022-10-28T21:50:50,657   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/katG_promoter_size_107bp.fsa'
2022-10-28T21:50:50,659   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/nuoA_promoter_size_365bp.fsa'
2022-10-28T21:50:50,661   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/panD.fsa'
2022-10-28T21:50:50,663   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/pncA_promoter_size_107bp.fsa'
2022-10-28T21:50:50,676   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/resistens-overview.txt'
2022-10-28T21:50:50,680   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ribD.fsa'
2022-10-28T21:50:50,682   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rplC.fsa'
2022-10-28T21:50:50,686   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoB.fsa'
2022-10-28T21:50:50,690   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoC.fsa'
2022-10-28T21:50:50,693   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsA.fsa'
2022-10-28T21:50:50,695   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsL.fsa'
2022-10-28T21:50:50,698   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrl.fsa'
2022-10-28T21:50:50,701   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrs.fsa'
2022-10-28T21:50:50,703   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyA.fsa'
2022-10-28T21:50:50,705   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyX_promoter_size_259bp.fsa'
2022-10-28T21:50:50,708   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/tlyA.fsa'
2022-10-28T21:50:50,710   adding 'staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ubiA.fsa'
2022-10-28T21:50:50,714   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/16S_rRNA.fsa'
2022-10-28T21:50:50,717   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a1.fsa'
2022-10-28T21:50:50,721   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a2.fsa'
2022-10-28T21:50:50,724   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a3.fsa'
2022-10-28T21:50:50,727   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a4.fsa'
2022-10-28T21:50:50,729   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/RNA_genes.txt'
2022-10-28T21:50:50,731   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/genes.txt'
2022-10-28T21:50:50,734   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/gyrA.fsa'
2022-10-28T21:50:50,736   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/macAB_promoter_size_225bp.fsa'
2022-10-28T21:50:50,739   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrC_promoter_size_174bp.fsa'
2022-10-28T21:50:50,741   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrR_promoter_size_66bp.fsa'
2022-10-28T21:50:50,744   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/parC.fsa'
2022-10-28T21:50:50,746   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/penA.fsa'
2022-10-28T21:50:50,749   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/pilQ.fsa'
2022-10-28T21:50:50,752   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/ponA.fsa'
2022-10-28T21:50:50,755   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/porB.fsa'
2022-10-28T21:50:50,757   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/resistens-overview.txt'
2022-10-28T21:50:50,760   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsE.fsa'
2022-10-28T21:50:50,762   adding 'staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsJ.fsa'
2022-10-28T21:50:50,765   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/CRT.fsa'
2022-10-28T21:50:50,768   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHFR.fsa'
2022-10-28T21:50:50,772   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHPS.fsa'
2022-10-28T21:50:50,775   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/K13.fsa'
2022-10-28T21:50:50,779   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/MDR.fsa'
2022-10-28T21:50:50,783   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/PIP.fsa'
2022-10-28T21:50:50,785   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/RNA_genes.txt'
2022-10-28T21:50:50,787   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/config'
2022-10-28T21:50:50,789   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/genes.txt'
2022-10-28T21:50:50,791   adding 'staramr/databases/data/dist/pointfinder/plasmodium_falciparum/resistens-overview.txt'
2022-10-28T21:50:50,795   adding 'staramr/databases/data/dist/pointfinder/salmonella/16S_rrsD.fsa'
2022-10-28T21:50:50,797   adding 'staramr/databases/data/dist/pointfinder/salmonella/RNA_genes.txt'
2022-10-28T21:50:50,801   adding 'staramr/databases/data/dist/pointfinder/salmonella/acrB.fsa'
2022-10-28T21:50:50,803   adding 'staramr/databases/data/dist/pointfinder/salmonella/genes.txt'
2022-10-28T21:50:50,806   adding 'staramr/databases/data/dist/pointfinder/salmonella/gyrA.fsa'
2022-10-28T21:50:50,809   adding 'staramr/databases/data/dist/pointfinder/salmonella/gyrB.fsa'
2022-10-28T21:50:50,812   adding 'staramr/databases/data/dist/pointfinder/salmonella/parC.fsa'
2022-10-28T21:50:50,814   adding 'staramr/databases/data/dist/pointfinder/salmonella/parE.fsa'
2022-10-28T21:50:50,816   adding 'staramr/databases/data/dist/pointfinder/salmonella/pmrA.fsa'
2022-10-28T21:50:50,819   adding 'staramr/databases/data/dist/pointfinder/salmonella/pmrB.fsa'
2022-10-28T21:50:50,821   adding 'staramr/databases/data/dist/pointfinder/salmonella/resistens-overview.txt'
2022-10-28T21:50:50,826   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/23S.fsa'
2022-10-28T21:50:50,828   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/RNA_genes.txt'
2022-10-28T21:50:50,830   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/dfrB.fsa'
2022-10-28T21:50:50,833   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/fusA.fsa'
2022-10-28T21:50:50,835   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/genes.txt'
2022-10-28T21:50:50,838   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlA.fsa'
2022-10-28T21:50:50,841   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlB.fsa'
2022-10-28T21:50:50,844   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/gyrA.fsa'
2022-10-28T21:50:50,847   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/ileS.fsa'
2022-10-28T21:50:50,850   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp2.fsa'
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2022-10-28T21:50:50,855   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp4_promoter_size_304bp.fsa'
2022-10-28T21:50:50,858   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/resistens-overview.txt'
2022-10-28T21:50:50,862   adding 'staramr/databases/data/dist/pointfinder/staphylococcus_aureus/rpoB.fsa'
2022-10-28T21:50:50,866   adding 'staramr/databases/data/dist/resfinder/.gitignore'
2022-10-28T21:50:50,869   adding 'staramr/databases/data/dist/resfinder/CHECK-entries.sh'
2022-10-28T21:50:50,871   adding 'staramr/databases/data/dist/resfinder/INSTALL.py'
2022-10-28T21:50:50,875   adding 'staramr/databases/data/dist/resfinder/README.md'
2022-10-28T21:50:51,061   adding 'staramr/databases/data/dist/resfinder/aminoglycoside.fsa'
2022-10-28T21:50:51,067   adding 'staramr/databases/data/dist/resfinder/antibiotic_classes.txt'
2022-10-28T21:50:51,693   adding 'staramr/databases/data/dist/resfinder/beta-lactam.fsa'
2022-10-28T21:50:51,763   adding 'staramr/databases/data/dist/resfinder/colistin.fsa'
2022-10-28T21:50:51,767   adding 'staramr/databases/data/dist/resfinder/config'
2022-10-28T21:50:51,793   adding 'staramr/databases/data/dist/resfinder/disinfectant.fsa'
2022-10-28T21:50:51,809   adding 'staramr/databases/data/dist/resfinder/fosfomycin.fsa'
2022-10-28T21:50:51,812   adding 'staramr/databases/data/dist/resfinder/fusidicacid.fsa'
2022-10-28T21:50:51,886   adding 'staramr/databases/data/dist/resfinder/glycopeptide.fsa'
2022-10-28T21:50:51,904   adding 'staramr/databases/data/dist/resfinder/history.txt'
2022-10-28T21:50:52,072   adding 'staramr/databases/data/dist/resfinder/macrolide.fsa'
2022-10-28T21:50:52,080   adding 'staramr/databases/data/dist/resfinder/nitroimidazole.fsa'
2022-10-28T21:50:52,092   adding 'staramr/databases/data/dist/resfinder/notes.txt'
2022-10-28T21:50:52,105   adding 'staramr/databases/data/dist/resfinder/oxazolidinone.fsa'
2022-10-28T21:50:52,151   adding 'staramr/databases/data/dist/resfinder/phenicol.fsa'
2022-10-28T21:50:52,155   adding 'staramr/databases/data/dist/resfinder/phenotype_panels.txt'
2022-10-28T21:50:52,223   adding 'staramr/databases/data/dist/resfinder/phenotypes.txt'
2022-10-28T21:50:52,240   adding 'staramr/databases/data/dist/resfinder/pseudomonicacid.fsa'
2022-10-28T21:50:52,274   adding 'staramr/databases/data/dist/resfinder/quinolone.fsa'
2022-10-28T21:50:52,280   adding 'staramr/databases/data/dist/resfinder/rifampicin.fsa'
2022-10-28T21:50:52,291   adding 'staramr/databases/data/dist/resfinder/sulphonamide.fsa'
2022-10-28T21:50:52,433   adding 'staramr/databases/data/dist/resfinder/tetracycline.fsa'
2022-10-28T21:50:52,466   adding 'staramr/databases/data/dist/resfinder/trimethoprim.fsa'
2022-10-28T21:50:52,471   adding 'staramr/databases/exclude/ExcludeGenesList.py'
2022-10-28T21:50:52,473   adding 'staramr/databases/exclude/__init__.py'
2022-10-28T21:50:52,476   adding 'staramr/databases/exclude/data/genes_to_exclude.tsv'
2022-10-28T21:50:52,480   adding 'staramr/databases/resistance/ARGDrugTable.py'
2022-10-28T21:50:52,482   adding 'staramr/databases/resistance/__init__.py'
2022-10-28T21:50:52,486   adding 'staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv'
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2022-10-28T21:50:52,527   adding 'staramr/databases/resistance/data/info.ini'
2022-10-28T21:50:52,531   adding 'staramr/databases/resistance/pointfinder/ARGDrugTablePointfinder.py'
2022-10-28T21:50:52,533   adding 'staramr/databases/resistance/pointfinder/__init__.py'
2022-10-28T21:50:52,536   adding 'staramr/databases/resistance/resfinder/ARGDrugTableResfinder.py'
2022-10-28T21:50:52,538   adding 'staramr/databases/resistance/resfinder/__init__.py'
2022-10-28T21:50:52,544   adding 'staramr/detection/AMRDetection.py'
2022-10-28T21:50:52,547   adding 'staramr/detection/AMRDetectionFactory.py'
2022-10-28T21:50:52,549   adding 'staramr/detection/AMRDetectionResistance.py'
2022-10-28T21:50:52,551   adding 'staramr/detection/__init__.py'
2022-10-28T21:50:52,555   adding 'staramr/exceptions/BlastProcessError.py'
2022-10-28T21:50:52,557   adding 'staramr/exceptions/CommandParseException.py'
2022-10-28T21:50:52,559   adding 'staramr/exceptions/DatabaseErrorException.py'
2022-10-28T21:50:52,561   adding 'staramr/exceptions/DatabaseNotFoundException.py'
2022-10-28T21:50:52,563   adding 'staramr/exceptions/GenotypePhenotypeMatchException.py'
2022-10-28T21:50:52,565   adding 'staramr/exceptions/InvalidPositionException.py'
2022-10-28T21:50:52,567   adding 'staramr/exceptions/__init__.py'
2022-10-28T21:50:52,572   adding 'staramr/results/AMRDetectionSummary.py'
2022-10-28T21:50:52,575   adding 'staramr/results/AMRDetectionSummaryResistance.py'
2022-10-28T21:50:52,579   adding 'staramr/results/QualityModule.py'
2022-10-28T21:50:52,581   adding 'staramr/results/__init__.py'
2022-10-28T21:50:52,586   adding 'staramr/subcommand/Database.py'
2022-10-28T21:50:52,594   adding 'staramr/subcommand/Search.py'
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2022-10-28T21:50:52,600   adding 'staramr/tests/__init__.py'
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2022-10-28T21:50:52,644   adding 'staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies-one-rev-complement.fsa'
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2022-10-28T21:50:52,679   adding 'staramr/tests/integration/data/non-match.fsa'
2022-10-28T21:50:52,681   adding 'staramr/tests/integration/data/pbp5-ins-466.fsa'
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2022-10-28T21:50:52,689   adding 'staramr/tests/integration/data/resfinder_beta-lactam-blaIMP-42-del-middle.fsa'
2022-10-28T21:50:52,691   adding 'staramr/tests/integration/data/rpsE-del78gtt.fsa'
2022-10-28T21:50:52,693   adding 'staramr/tests/integration/data/test-aminoglycoside.fsa'
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2022-10-28T21:50:52,698   adding 'staramr/tests/integration/data/test-index-range-plasmid.fsa'
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2022-10-28T21:50:52,704   adding 'staramr/tests/integration/data/test-plasmids-seq.fsa'
2022-10-28T21:50:52,709   adding 'staramr/tests/integration/data/test-resfinder-correct-seq.fsa'
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2022-10-28T21:50:52,713   adding 'staramr/tests/integration/data/test-seq-id.fsa'
2022-10-28T21:50:52,716   adding 'staramr/tests/integration/data/gene-drug-tables/drug_key_pointfinder_invalid.tsv'
2022-10-28T21:50:52,719   adding 'staramr/tests/integration/data/gene-drug-tables/drug_key_resfinder_invalid.tsv'
2022-10-28T21:50:52,722   adding 'staramr/tests/integration/databases/__init__.py'
2022-10-28T21:50:52,724   adding 'staramr/tests/integration/databases/test_AMRDatabasesManager.py'
2022-10-28T21:50:52,727   adding 'staramr/tests/integration/databases/test_BlastDatabaseRepositories.py'
2022-10-28T21:50:52,730   adding 'staramr/tests/integration/detection/__init__.py'
2022-10-28T21:50:52,739   adding 'staramr/tests/integration/detection/test_AMRDetection.py'
2022-10-28T21:50:52,744   adding 'staramr/tests/integration/detection/test_AMRDetectionMLST.py'
2022-10-28T21:50:52,747   adding 'staramr/tests/integration/detection/test_AMRDetectionPlasmid.py'
2022-10-28T21:50:52,750   adding 'staramr/tests/unit/__init__.py'
2022-10-28T21:50:52,753   adding 'staramr/tests/unit/blast/__init__.py'
2022-10-28T21:50:52,756   adding 'staramr/tests/unit/blast/pointfinder/__init__.py'
2022-10-28T21:50:52,759   adding 'staramr/tests/unit/blast/pointfinder/test_PointfinderDatabaseInfo.py'
2022-10-28T21:50:52,762   adding 'staramr/tests/unit/blast/results/__init__.py'
2022-10-28T21:50:52,766   adding 'staramr/tests/unit/blast/results/test_BlastHitPartitions.py'
2022-10-28T21:50:52,770   adding 'staramr/tests/unit/blast/results/pointfinder/__init__.py'
2022-10-28T21:50:52,773   adding 'staramr/tests/unit/blast/results/pointfinder/test_PlasmidfinderHitHSP.py'
2022-10-28T21:50:52,776   adding 'staramr/tests/unit/blast/results/pointfinder/test_PointfinderHitHSP.py'
2022-10-28T21:50:52,779   adding 'staramr/tests/unit/blast/results/pointfinder/codon/__init__.py'
2022-10-28T21:50:52,783   adding 'staramr/tests/unit/blast/results/pointfinder/codon/test_CodonMutationPosition.py'
2022-10-28T21:50:52,786   adding 'staramr/tests/unit/blast/results/pointfinder/nucleotide/__init__.py'
2022-10-28T21:50:52,789   adding 'staramr/tests/unit/blast/results/pointfinder/nucleotide/test_NucleotideMutationPosition.py'
2022-10-28T21:50:52,793   adding 'staramr/tests/unit/data/test-Genome-Size-Exactly-Maximum.fasta'
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2022-10-28T21:50:52,801   adding 'staramr/tests/unit/data/test-Genome-Size-Unaffected-By-Empty-Contigs.fasta'
2022-10-28T21:50:52,803   adding 'staramr/tests/unit/data/test-Genome-Size-Within-Accepted-Range.fasta'
2022-10-28T21:50:52,805   adding 'staramr/tests/unit/data/test-N50-Calculation.fasta'
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2022-10-28T21:50:52,844   adding 'staramr/tests/unit/results/test_AMRDetectionSummary.py'
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2022-10-28T21:50:52,856   adding 'staramr-0.9.1.data/scripts/staramr'
2022-10-28T21:50:52,863   adding 'staramr-0.9.1.dist-info/LICENSE'
2022-10-28T21:50:52,865   adding 'staramr-0.9.1.dist-info/METADATA'
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2022-10-28T21:50:52,926   removing build/bdist.linux-armv7l/wheel
2022-10-28T21:50:53,300   Building wheel for staramr (setup.py): finished with status 'done'
2022-10-28T21:50:53,332   Created wheel for staramr: filename=staramr-0.9.1-py3-none-any.whl size=854627 sha256=6c9afa65b2251c63c90f3162128128d0475fb7d71698c07fbf5e12943ce172cd
2022-10-28T21:50:53,334   Stored in directory: /tmp/pip-ephem-wheel-cache-mz7qnt71/wheels/09/9d/76/3c8ade77c11a6b5beca289d562b285ed7ba95f359fcdbe93d7
2022-10-28T21:50:53,390 Successfully built staramr
2022-10-28T21:50:53,481 Removed build tracker: '/tmp/pip-build-tracker-cxjz4g_a'