2022-10-29T21:18:33,048 Created temporary directory: /tmp/pip-ephem-wheel-cache-gquoxilr 2022-10-29T21:18:33,053 Created temporary directory: /tmp/pip-build-tracker-i5ln8jty 2022-10-29T21:18:33,053 Initialized build tracking at /tmp/pip-build-tracker-i5ln8jty 2022-10-29T21:18:33,054 Created build tracker: /tmp/pip-build-tracker-i5ln8jty 2022-10-29T21:18:33,054 Entered build tracker: /tmp/pip-build-tracker-i5ln8jty 2022-10-29T21:18:33,055 Created temporary directory: /tmp/pip-wheel-_pbt48rp 2022-10-29T21:18:33,064 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-29T21:18:33,069 Created temporary directory: /tmp/pip-ephem-wheel-cache-nxviapqm 2022-10-29T21:18:33,126 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-29T21:18:33,133 2 location(s) to search for versions of bioc: 2022-10-29T21:18:33,133 * https://pypi.org/simple/bioc/ 2022-10-29T21:18:33,133 * https://www.piwheels.org/simple/bioc/ 2022-10-29T21:18:33,134 Fetching project page and analyzing links: https://pypi.org/simple/bioc/ 2022-10-29T21:18:33,135 Getting page https://pypi.org/simple/bioc/ 2022-10-29T21:18:33,139 Found index url https://pypi.org/simple 2022-10-29T21:18:33,375 Fetched page https://pypi.org/simple/bioc/ as application/vnd.pypi.simple.v1+json 2022-10-29T21:18:33,401 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/11/4d/0e357d942757065c619824fc3026f75143bf5b0296519e79f05bfa97dd3c/bioc-1.0.dev22-py2.7.egg (from 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2022-10-29T21:18:33,424 Found link https://files.pythonhosted.org/packages/d6/f8/4249b9b73c1a51d4711de3d32505ae4a74d6bb36f6cd3e9318812fff272f/bioc-1.3.6.tar.gz (from https://pypi.org/simple/bioc/) (requires-python:>=3.6), version: 1.3.6 2022-10-29T21:18:33,426 Found link https://files.pythonhosted.org/packages/bb/42/d3700a074971bc2e69febd75f1a139225299979aee24551ec806eb3b82d5/bioc-1.3.7.tar.gz (from https://pypi.org/simple/bioc/) (requires-python:>=3.6), version: 1.3.7 2022-10-29T21:18:33,426 Skipping link: No binaries permitted for bioc: https://files.pythonhosted.org/packages/c1/57/c183bce58b4decdf0f916efc716efec30363b13c0c78ad2d18f0782cafd1/bioc-2.0.dev1-py3-none-any.whl (from https://pypi.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,428 Found link https://files.pythonhosted.org/packages/24/ba/4abae7712abe1e7f0f228fa9157d621d10d9aa7e3661505abbd05aa8347e/bioc-2.0.dev1.tar.gz (from https://pypi.org/simple/bioc/) (requires-python:>=3.6), version: 2.0.dev1 2022-10-29T21:18:33,428 Skipping link: No binaries permitted for bioc: https://files.pythonhosted.org/packages/a0/4c/d5dea01825c5433e18467b9e76e4ce0118c2f83ebc8cc77198d1e2819ee1/bioc-2.0.dev2-py3-none-any.whl (from https://pypi.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,430 Found link https://files.pythonhosted.org/packages/22/a8/4656d7742fe9427cabe32abebb6ede03257414df2aabfb6b72fb21ce53b8/bioc-2.0.dev2.tar.gz (from https://pypi.org/simple/bioc/) (requires-python:>=3.6), version: 2.0.dev2 2022-10-29T21:18:33,430 Skipping link: No binaries permitted for bioc: https://files.pythonhosted.org/packages/6f/55/39acc2dab7fab0fb8e6220b31cba96936c5d2a474e326d650716178b6604/bioc-2.0.dev3-py3-none-any.whl (from https://pypi.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,432 Found link https://files.pythonhosted.org/packages/29/b3/962ba6f0f27bbab4c9666293de4d9ca0948fb8056da12740a4a0d39264d1/bioc-2.0.dev3.tar.gz (from https://pypi.org/simple/bioc/) 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No binaries permitted for bioc: https://files.pythonhosted.org/packages/02/db/87fd208d7658c4458a9f3651baa6e307b741ec1dcf74090511f19344cf75/bioc-2.0.post3-py3-none-any.whl (from https://pypi.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,440 Found link https://files.pythonhosted.org/packages/51/db/8d3308030b95155753b0c379c98f7c09eba1e092dc6c572ed55775f0e0ec/bioc-2.0.post3.tar.gz (from https://pypi.org/simple/bioc/) (requires-python:>=3.6), version: 2.0.post3 2022-10-29T21:18:33,441 Skipping link: No binaries permitted for bioc: https://files.pythonhosted.org/packages/a5/c9/bdc56bcfa356226f9269e556de5066eacd828873e19f72e3e61f7264c74c/bioc-2.0.post4-py3-none-any.whl (from https://pypi.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,442 Found link https://files.pythonhosted.org/packages/8f/dc/055776ad79cbdaf96dd12b29d1243f995612231eba8e84b7e030b11cb572/bioc-2.0.post4.tar.gz (from https://pypi.org/simple/bioc/) (requires-python:>=3.6), version: 2.0.post4 2022-10-29T21:18:33,443 Skipping link: No binaries permitted for bioc: https://files.pythonhosted.org/packages/03/f3/ae05f2d87d3bbd8f2661e45d8acace475aa27b131f0e310d8ee07e6f77c5/bioc-2.0.post5-py3-none-any.whl (from https://pypi.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,444 Found link https://files.pythonhosted.org/packages/09/6c/da88a2b4b1ee2b17cc3b4ee5566b35780ea103d9c3fd54cbd549e4fc6890/bioc-2.0.post5.tar.gz (from https://pypi.org/simple/bioc/) (requires-python:>=3.6), version: 2.0.post5 2022-10-29T21:18:33,445 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioc/ 2022-10-29T21:18:33,446 Getting page https://www.piwheels.org/simple/bioc/ 2022-10-29T21:18:33,448 Found index url https://www.piwheels.org/simple 2022-10-29T21:18:33,722 Fetched page https://www.piwheels.org/simple/bioc/ as text/html 2022-10-29T21:18:33,744 Skipping link: No binaries permitted for bioc: 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https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,747 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-2.0.dev5-py3-none-any.whl#sha256=97dababe9ee6027d6f1ebdc6ba77284ddfb01f0b1ecb27b3628889ce750511f3 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,747 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-2.0.dev3-py3-none-any.whl#sha256=83314a7d78fedec025db060e1390adcc1478a828ec207befebe528416f51baa2 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,748 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-2.0.dev2-py3-none-any.whl#sha256=c51e9250dd5ec8a6ed4307fdb224f99aa9aaf448f47c5b0f998397c6b191207c (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,748 Skipping link: No binaries permitted for bioc: 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https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,750 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.4-py3-none-any.whl#sha256=def6887f0c94d43b6f165b7b6ce505cbc7ce4875d9711a55e9d45270ee7c7155 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,751 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.3-py3-none-any.whl#sha256=66723d600d846e05a4bea60770ee211bbd8919f46eb975235474f0f2bf351fc3 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,751 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.2-py3-none-any.whl#sha256=a3f7600318fd347e0b1bd82e9c6031a86120f3cd3511ba72ca75c109c0656c24 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-10-29T21:18:33,752 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.1-py3-none-any.whl#sha256=000cb7c70c9816ff52e9b51cc4fccbf95359ee03d9134e3f7ec69ab14cddabf2 (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,752 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3-py3-none-any.whl#sha256=876a0f57024c3ed9388f698d550e40364d9d86e0a440dbf21ff3ee728ae010fe (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,753 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.2.4-py3-none-any.whl#sha256=524b211e147bbe01267ca14c87df49237ff2b0160026634ba01b64f29c37186d (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,753 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.2.3-py3-none-any.whl#sha256=ec34d13e4ff24e7dfa8a7792ba6aeb39ecc4a952eaa1ba595aeeff7637709253 (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,754 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.1.dev3-py2.py3-none-any.whl#sha256=074919b0d7217736c21be7caca4dbbb3a275c40c9e793daa9106c74370e8a5a9 (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,754 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.1.dev2-py2.py3-none-any.whl#sha256=be862be4bc05209775e41c48ec4f96a6eb09f62606a9396156572574498d354f (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,755 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.1.dev1-py2.py3-none-any.whl#sha256=33e24ee3a59f38357cb019b6edf576afb4c7af09c4b2202424c359f4c0e06241 (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,756 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev30-py2.py3-none-any.whl#sha256=9654e7f5ea243e69999d4fa83c5bc87c8fa4dd7556320fdc911d6b4207e5216b (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,756 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev28-py2.py3-none-any.whl#sha256=e4980eb2a0cad4077da638efa0d76668b591eeb31e0d3dcdcfabda8be93540bf (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,757 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev27-py2.py3-none-any.whl#sha256=200deba814e68e3991967d15f6134e0cc1863671bf3c11606c422bea63addf06 (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,757 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev25-py3-none-any.whl#sha256=213c07bcad58aee36030963380f1db8a4a9e0d0c4de87a05ab0cecf5f034de84 (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,758 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev24-py3-none-any.whl#sha256=3754b64d6ac7b78ff18e6c9afed776861c34bfee3d5c1c8985fdffa99c9db743 (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,758 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev23-py3-none-any.whl#sha256=bd144317a86599b866d9a947683a6fe215ca32883f8a1b219683c0115be6a30d (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,759 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev22-py3-none-any.whl#sha256=05187959b16aa034e378039f93dc1d09b2679f2bdff6085e6566fb1c3c3abd90 (from https://www.piwheels.org/simple/bioc/) 2022-10-29T21:18:33,759 Skipping link: not a file: https://www.piwheels.org/simple/bioc/ 2022-10-29T21:18:33,760 Skipping link: not a file: https://pypi.org/simple/bioc/ 2022-10-29T21:18:33,802 Given no hashes to check 1 links for project 'bioc': discarding no candidates 2022-10-29T21:18:33,829 Collecting bioc==2.0.post5 2022-10-29T21:18:33,833 Created temporary directory: /tmp/pip-unpack-lsfx3uel 2022-10-29T21:18:34,067 Downloading bioc-2.0.post5.tar.gz (27 kB) 2022-10-29T21:18:34,245 Added bioc==2.0.post5 from https://files.pythonhosted.org/packages/09/6c/da88a2b4b1ee2b17cc3b4ee5566b35780ea103d9c3fd54cbd549e4fc6890/bioc-2.0.post5.tar.gz to build tracker '/tmp/pip-build-tracker-i5ln8jty' 2022-10-29T21:18:34,255 Created temporary directory: /tmp/pip-build-env-lhpfsn1z 2022-10-29T21:18:34,267 Installing build dependencies: started 2022-10-29T21:18:34,269 Running command pip subprocess to install build dependencies 2022-10-29T21:18:36,932 Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2022-10-29T21:18:37,665 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-29T21:18:37,718 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-29T21:18:41,561 Collecting setuptools>=42 2022-10-29T21:18:41,832 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB) 2022-10-29T21:18:42,450 Collecting wheel 2022-10-29T21:18:42,485 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-10-29T21:18:47,070 Installing collected packages: wheel, setuptools 2022-10-29T21:18:47,341 Creating /tmp/pip-build-env-lhpfsn1z/overlay/bin 2022-10-29T21:18:47,346 changing mode of /tmp/pip-build-env-lhpfsn1z/overlay/bin/wheel to 755 2022-10-29T21:18:52,172 Successfully installed setuptools-65.5.0 wheel-0.37.1 2022-10-29T21:18:52,613 Installing build dependencies: finished with status 'done' 2022-10-29T21:18:52,624 Getting requirements to build wheel: started 2022-10-29T21:18:52,627 Running command Getting requirements to build wheel 2022-10-29T21:18:54,758 running egg_info 2022-10-29T21:18:54,771 writing src/bioc.egg-info/PKG-INFO 2022-10-29T21:18:54,775 writing dependency_links to src/bioc.egg-info/dependency_links.txt 2022-10-29T21:18:54,779 writing entry points to src/bioc.egg-info/entry_points.txt 2022-10-29T21:18:54,781 writing requirements to src/bioc.egg-info/requires.txt 2022-10-29T21:18:54,783 writing top-level names to src/bioc.egg-info/top_level.txt 2022-10-29T21:18:54,831 reading manifest file 'src/bioc.egg-info/SOURCES.txt' 2022-10-29T21:18:54,837 adding license file 'LICENSE' 2022-10-29T21:18:54,845 writing manifest file 'src/bioc.egg-info/SOURCES.txt' 2022-10-29T21:18:55,045 Getting requirements to build wheel: finished with status 'done' 2022-10-29T21:18:55,065 Created temporary directory: /tmp/pip-modern-metadata-5de74onq 2022-10-29T21:18:55,070 Preparing metadata (pyproject.toml): started 2022-10-29T21:18:55,073 Running command Preparing metadata (pyproject.toml) 2022-10-29T21:18:56,930 running dist_info 2022-10-29T21:18:56,972 creating /tmp/pip-modern-metadata-5de74onq/bioc.egg-info 2022-10-29T21:18:56,981 writing /tmp/pip-modern-metadata-5de74onq/bioc.egg-info/PKG-INFO 2022-10-29T21:18:56,985 writing dependency_links to /tmp/pip-modern-metadata-5de74onq/bioc.egg-info/dependency_links.txt 2022-10-29T21:18:56,989 writing entry points to /tmp/pip-modern-metadata-5de74onq/bioc.egg-info/entry_points.txt 2022-10-29T21:18:56,992 writing requirements to /tmp/pip-modern-metadata-5de74onq/bioc.egg-info/requires.txt 2022-10-29T21:18:56,994 writing top-level names to /tmp/pip-modern-metadata-5de74onq/bioc.egg-info/top_level.txt 2022-10-29T21:18:56,996 writing manifest file '/tmp/pip-modern-metadata-5de74onq/bioc.egg-info/SOURCES.txt' 2022-10-29T21:18:57,042 reading manifest file '/tmp/pip-modern-metadata-5de74onq/bioc.egg-info/SOURCES.txt' 2022-10-29T21:18:57,049 adding license file 'LICENSE' 2022-10-29T21:18:57,055 writing manifest file '/tmp/pip-modern-metadata-5de74onq/bioc.egg-info/SOURCES.txt' 2022-10-29T21:18:57,057 creating '/tmp/pip-modern-metadata-5de74onq/bioc-2.0.post5.dist-info' 2022-10-29T21:18:57,216 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-29T21:18:57,434 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-29T21:18:57,449 Source in /tmp/pip-wheel-_pbt48rp/bioc_6ce4fde00bf34ead8bd8ff8803fb73aa has version 2.0.post5, which satisfies requirement bioc==2.0.post5 from https://files.pythonhosted.org/packages/09/6c/da88a2b4b1ee2b17cc3b4ee5566b35780ea103d9c3fd54cbd549e4fc6890/bioc-2.0.post5.tar.gz 2022-10-29T21:18:57,451 Removed bioc==2.0.post5 from https://files.pythonhosted.org/packages/09/6c/da88a2b4b1ee2b17cc3b4ee5566b35780ea103d9c3fd54cbd549e4fc6890/bioc-2.0.post5.tar.gz from build tracker '/tmp/pip-build-tracker-i5ln8jty' 2022-10-29T21:18:57,467 Created temporary directory: /tmp/pip-unpack-2cpdu_rt 2022-10-29T21:18:57,468 Building wheels for collected packages: bioc 2022-10-29T21:18:57,477 Created temporary directory: /tmp/pip-wheel-9qkhgleq 2022-10-29T21:18:57,478 Destination directory: /tmp/pip-wheel-9qkhgleq 2022-10-29T21:18:57,484 Building wheel for bioc (pyproject.toml): started 2022-10-29T21:18:57,486 Running command Building wheel for bioc (pyproject.toml) 2022-10-29T21:18:59,367 running bdist_wheel 2022-10-29T21:18:59,441 running build 2022-10-29T21:18:59,441 running build_py 2022-10-29T21:18:59,462 creating build 2022-10-29T21:18:59,463 creating build/lib 2022-10-29T21:18:59,464 creating build/lib/bioc 2022-10-29T21:18:59,466 copying src/bioc/bioc.py -> build/lib/bioc 2022-10-29T21:18:59,471 copying src/bioc/constants.py -> build/lib/bioc 2022-10-29T21:18:59,474 copying src/bioc/biocio.py -> build/lib/bioc 2022-10-29T21:18:59,478 copying src/bioc/utils.py -> build/lib/bioc 2022-10-29T21:18:59,481 copying src/bioc/__init__.py -> build/lib/bioc 2022-10-29T21:18:59,484 copying src/bioc/validator.py -> build/lib/bioc 2022-10-29T21:18:59,488 copying src/bioc/biocitertools.py -> build/lib/bioc 2022-10-29T21:18:59,493 creating build/lib/bioc/tools 2022-10-29T21:18:59,494 copying src/bioc/tools/split.py -> build/lib/bioc/tools 2022-10-29T21:18:59,497 copying src/bioc/tools/brat2bioc.py -> build/lib/bioc/tools 2022-10-29T21:18:59,501 copying src/bioc/tools/__init__.py -> build/lib/bioc/tools 2022-10-29T21:18:59,503 copying src/bioc/tools/pubtator2bioc.py -> build/lib/bioc/tools 2022-10-29T21:18:59,507 creating build/lib/bioc/biocjson 2022-10-29T21:18:59,509 copying src/bioc/biocjson/decoder.py -> build/lib/bioc/biocjson 2022-10-29T21:18:59,513 copying src/bioc/biocjson/encoder.py -> build/lib/bioc/biocjson 2022-10-29T21:18:59,516 copying src/bioc/biocjson/__init__.py -> build/lib/bioc/biocjson 2022-10-29T21:18:59,521 creating build/lib/bioc/pubtator 2022-10-29T21:18:59,522 copying src/bioc/pubtator/decoder.py -> build/lib/bioc/pubtator 2022-10-29T21:18:59,526 copying src/bioc/pubtator/pubtator.py -> build/lib/bioc/pubtator 2022-10-29T21:18:59,529 copying src/bioc/pubtator/encoder.py -> build/lib/bioc/pubtator 2022-10-29T21:18:59,532 copying src/bioc/pubtator/__init__.py -> build/lib/bioc/pubtator 2022-10-29T21:18:59,535 copying src/bioc/pubtator/validator.py -> build/lib/bioc/pubtator 2022-10-29T21:18:59,540 creating build/lib/bioc/biocxml 2022-10-29T21:18:59,541 copying src/bioc/biocxml/decoder2.py -> build/lib/bioc/biocxml 2022-10-29T21:18:59,546 copying src/bioc/biocxml/decoder.py -> build/lib/bioc/biocxml 2022-10-29T21:18:59,550 copying src/bioc/biocxml/encoder2.py -> build/lib/bioc/biocxml 2022-10-29T21:18:59,553 copying src/bioc/biocxml/encoder.py -> build/lib/bioc/biocxml 2022-10-29T21:18:59,557 copying src/bioc/biocxml/__init__.py -> build/lib/bioc/biocxml 2022-10-29T21:18:59,562 creating build/lib/bioc/brat 2022-10-29T21:18:59,563 copying src/bioc/brat/decoder.py -> build/lib/bioc/brat 2022-10-29T21:18:59,567 copying src/bioc/brat/brat.py -> build/lib/bioc/brat 2022-10-29T21:18:59,571 copying src/bioc/brat/encoder.py -> build/lib/bioc/brat 2022-10-29T21:18:59,574 copying src/bioc/brat/__init__.py -> build/lib/bioc/brat 2022-10-29T21:18:59,577 copying src/bioc/brat/validator.py -> build/lib/bioc/brat 2022-10-29T21:18:59,620 installing to build/bdist.linux-armv7l/wheel 2022-10-29T21:18:59,621 running install 2022-10-29T21:18:59,684 running install_lib 2022-10-29T21:18:59,698 creating build/bdist.linux-armv7l 2022-10-29T21:18:59,699 creating build/bdist.linux-armv7l/wheel 2022-10-29T21:18:59,702 creating build/bdist.linux-armv7l/wheel/bioc 2022-10-29T21:18:59,704 copying build/lib/bioc/bioc.py -> build/bdist.linux-armv7l/wheel/bioc 2022-10-29T21:18:59,710 creating build/bdist.linux-armv7l/wheel/bioc/tools 2022-10-29T21:18:59,712 copying build/lib/bioc/tools/split.py -> build/bdist.linux-armv7l/wheel/bioc/tools 2022-10-29T21:18:59,715 copying build/lib/bioc/tools/brat2bioc.py -> build/bdist.linux-armv7l/wheel/bioc/tools 2022-10-29T21:18:59,719 copying build/lib/bioc/tools/__init__.py -> build/bdist.linux-armv7l/wheel/bioc/tools 2022-10-29T21:18:59,722 copying build/lib/bioc/tools/pubtator2bioc.py -> build/bdist.linux-armv7l/wheel/bioc/tools 2022-10-29T21:18:59,727 creating build/bdist.linux-armv7l/wheel/bioc/biocjson 2022-10-29T21:18:59,729 copying build/lib/bioc/biocjson/decoder.py -> build/bdist.linux-armv7l/wheel/bioc/biocjson 2022-10-29T21:18:59,734 copying build/lib/bioc/biocjson/encoder.py -> build/bdist.linux-armv7l/wheel/bioc/biocjson 2022-10-29T21:18:59,738 copying build/lib/bioc/biocjson/__init__.py -> build/bdist.linux-armv7l/wheel/bioc/biocjson 2022-10-29T21:18:59,742 creating build/bdist.linux-armv7l/wheel/bioc/pubtator 2022-10-29T21:18:59,744 copying build/lib/bioc/pubtator/decoder.py -> build/bdist.linux-armv7l/wheel/bioc/pubtator 2022-10-29T21:18:59,748 copying build/lib/bioc/pubtator/pubtator.py -> build/bdist.linux-armv7l/wheel/bioc/pubtator 2022-10-29T21:18:59,752 copying build/lib/bioc/pubtator/encoder.py -> build/bdist.linux-armv7l/wheel/bioc/pubtator 2022-10-29T21:18:59,756 copying build/lib/bioc/pubtator/__init__.py -> build/bdist.linux-armv7l/wheel/bioc/pubtator 2022-10-29T21:18:59,760 copying build/lib/bioc/pubtator/validator.py -> build/bdist.linux-armv7l/wheel/bioc/pubtator 2022-10-29T21:18:59,763 copying build/lib/bioc/constants.py -> build/bdist.linux-armv7l/wheel/bioc 2022-10-29T21:18:59,767 creating build/bdist.linux-armv7l/wheel/bioc/biocxml 2022-10-29T21:18:59,769 copying build/lib/bioc/biocxml/decoder2.py -> build/bdist.linux-armv7l/wheel/bioc/biocxml 2022-10-29T21:18:59,774 copying build/lib/bioc/biocxml/decoder.py -> build/bdist.linux-armv7l/wheel/bioc/biocxml 2022-10-29T21:18:59,778 copying build/lib/bioc/biocxml/encoder2.py -> build/bdist.linux-armv7l/wheel/bioc/biocxml 2022-10-29T21:18:59,783 copying build/lib/bioc/biocxml/encoder.py -> build/bdist.linux-armv7l/wheel/bioc/biocxml 2022-10-29T21:18:59,787 copying build/lib/bioc/biocxml/__init__.py -> build/bdist.linux-armv7l/wheel/bioc/biocxml 2022-10-29T21:18:59,790 copying build/lib/bioc/biocio.py -> build/bdist.linux-armv7l/wheel/bioc 2022-10-29T21:18:59,793 copying build/lib/bioc/utils.py -> build/bdist.linux-armv7l/wheel/bioc 2022-10-29T21:18:59,797 copying build/lib/bioc/__init__.py -> build/bdist.linux-armv7l/wheel/bioc 2022-10-29T21:18:59,800 copying build/lib/bioc/validator.py -> build/bdist.linux-armv7l/wheel/bioc 2022-10-29T21:18:59,804 copying build/lib/bioc/biocitertools.py -> build/bdist.linux-armv7l/wheel/bioc 2022-10-29T21:18:59,809 creating build/bdist.linux-armv7l/wheel/bioc/brat 2022-10-29T21:18:59,810 copying build/lib/bioc/brat/decoder.py -> build/bdist.linux-armv7l/wheel/bioc/brat 2022-10-29T21:18:59,815 copying build/lib/bioc/brat/brat.py -> build/bdist.linux-armv7l/wheel/bioc/brat 2022-10-29T21:18:59,819 copying build/lib/bioc/brat/encoder.py -> build/bdist.linux-armv7l/wheel/bioc/brat 2022-10-29T21:18:59,822 copying build/lib/bioc/brat/__init__.py -> build/bdist.linux-armv7l/wheel/bioc/brat 2022-10-29T21:18:59,825 copying build/lib/bioc/brat/validator.py -> build/bdist.linux-armv7l/wheel/bioc/brat 2022-10-29T21:18:59,828 running install_egg_info 2022-10-29T21:18:59,884 running egg_info 2022-10-29T21:18:59,893 writing src/bioc.egg-info/PKG-INFO 2022-10-29T21:18:59,896 writing dependency_links to src/bioc.egg-info/dependency_links.txt 2022-10-29T21:18:59,900 writing entry points to src/bioc.egg-info/entry_points.txt 2022-10-29T21:18:59,902 writing requirements to src/bioc.egg-info/requires.txt 2022-10-29T21:18:59,904 writing top-level names to src/bioc.egg-info/top_level.txt 2022-10-29T21:18:59,927 reading manifest file 'src/bioc.egg-info/SOURCES.txt' 2022-10-29T21:18:59,932 adding license file 'LICENSE' 2022-10-29T21:18:59,940 writing manifest file 'src/bioc.egg-info/SOURCES.txt' 2022-10-29T21:18:59,943 Copying src/bioc.egg-info to build/bdist.linux-armv7l/wheel/bioc-2.0.post5-py3.7.egg-info 2022-10-29T21:18:59,966 running install_scripts 2022-10-29T21:19:00,124 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-29T21:19:00,132 creating build/bdist.linux-armv7l/wheel/bioc-2.0.post5.dist-info/WHEEL 2022-10-29T21:19:00,137 creating '/tmp/pip-wheel-9qkhgleq/tmpdjeowhhf/bioc-2.0.post5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-29T21:19:00,141 adding 'bioc/__init__.py' 2022-10-29T21:19:00,147 adding 'bioc/bioc.py' 2022-10-29T21:19:00,149 adding 'bioc/biocio.py' 2022-10-29T21:19:00,152 adding 'bioc/biocitertools.py' 2022-10-29T21:19:00,154 adding 'bioc/constants.py' 2022-10-29T21:19:00,157 adding 'bioc/utils.py' 2022-10-29T21:19:00,160 adding 'bioc/validator.py' 2022-10-29T21:19:00,163 adding 'bioc/biocjson/__init__.py' 2022-10-29T21:19:00,166 adding 'bioc/biocjson/decoder.py' 2022-10-29T21:19:00,168 adding 'bioc/biocjson/encoder.py' 2022-10-29T21:19:00,172 adding 'bioc/biocxml/__init__.py' 2022-10-29T21:19:00,176 adding 'bioc/biocxml/decoder.py' 2022-10-29T21:19:00,180 adding 'bioc/biocxml/decoder2.py' 2022-10-29T21:19:00,183 adding 'bioc/biocxml/encoder.py' 2022-10-29T21:19:00,186 adding 'bioc/biocxml/encoder2.py' 2022-10-29T21:19:00,189 adding 'bioc/brat/__init__.py' 2022-10-29T21:19:00,194 adding 'bioc/brat/brat.py' 2022-10-29T21:19:00,197 adding 'bioc/brat/decoder.py' 2022-10-29T21:19:00,200 adding 'bioc/brat/encoder.py' 2022-10-29T21:19:00,202 adding 'bioc/brat/validator.py' 2022-10-29T21:19:00,205 adding 'bioc/pubtator/__init__.py' 2022-10-29T21:19:00,208 adding 'bioc/pubtator/decoder.py' 2022-10-29T21:19:00,210 adding 'bioc/pubtator/encoder.py' 2022-10-29T21:19:00,212 adding 'bioc/pubtator/pubtator.py' 2022-10-29T21:19:00,215 adding 'bioc/pubtator/validator.py' 2022-10-29T21:19:00,218 adding 'bioc/tools/__init__.py' 2022-10-29T21:19:00,220 adding 'bioc/tools/brat2bioc.py' 2022-10-29T21:19:00,222 adding 'bioc/tools/pubtator2bioc.py' 2022-10-29T21:19:00,225 adding 'bioc/tools/split.py' 2022-10-29T21:19:00,229 adding 'bioc-2.0.post5.dist-info/LICENSE' 2022-10-29T21:19:00,232 adding 'bioc-2.0.post5.dist-info/METADATA' 2022-10-29T21:19:00,234 adding 'bioc-2.0.post5.dist-info/WHEEL' 2022-10-29T21:19:00,235 adding 'bioc-2.0.post5.dist-info/entry_points.txt' 2022-10-29T21:19:00,237 adding 'bioc-2.0.post5.dist-info/top_level.txt' 2022-10-29T21:19:00,239 adding 'bioc-2.0.post5.dist-info/RECORD' 2022-10-29T21:19:00,243 removing build/bdist.linux-armv7l/wheel 2022-10-29T21:19:00,495 Building wheel for bioc (pyproject.toml): finished with status 'done' 2022-10-29T21:19:00,510 Created wheel for bioc: filename=bioc-2.0.post5-py3-none-any.whl size=37325 sha256=09875a513a39f78fde49469a0e57c89b77947597f280d725a74571b71470760f 2022-10-29T21:19:00,512 Stored in directory: /tmp/pip-ephem-wheel-cache-nxviapqm/wheels/bb/57/c9/21c866badc985f334af68abe7a942cec3a15332a86599168e4 2022-10-29T21:19:00,542 Successfully built bioc 2022-10-29T21:19:00,555 Removed build tracker: '/tmp/pip-build-tracker-i5ln8jty'