2022-10-30T09:37:38,336 Created temporary directory: /tmp/pip-ephem-wheel-cache-i7xdk1l8 2022-10-30T09:37:38,341 Created temporary directory: /tmp/pip-build-tracker-jwz7ni5w 2022-10-30T09:37:38,342 Initialized build tracking at /tmp/pip-build-tracker-jwz7ni5w 2022-10-30T09:37:38,342 Created build tracker: /tmp/pip-build-tracker-jwz7ni5w 2022-10-30T09:37:38,342 Entered build tracker: /tmp/pip-build-tracker-jwz7ni5w 2022-10-30T09:37:38,343 Created temporary directory: /tmp/pip-wheel-t0ht98_o 2022-10-30T09:37:38,352 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-30T09:37:38,357 Created temporary directory: /tmp/pip-ephem-wheel-cache-jnckwvom 2022-10-30T09:37:38,414 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-30T09:37:38,421 2 location(s) to search for versions of tiara: 2022-10-30T09:37:38,421 * https://pypi.org/simple/tiara/ 2022-10-30T09:37:38,421 * https://www.piwheels.org/simple/tiara/ 2022-10-30T09:37:38,422 Fetching project page and analyzing links: https://pypi.org/simple/tiara/ 2022-10-30T09:37:38,423 Getting page https://pypi.org/simple/tiara/ 2022-10-30T09:37:38,427 Found index url https://pypi.org/simple 2022-10-30T09:37:38,664 Fetched page https://pypi.org/simple/tiara/ as application/vnd.pypi.simple.v1+json 2022-10-30T09:37:38,670 Skipping link: No binaries permitted for tiara: https://files.pythonhosted.org/packages/27/6d/2226458f02568d866c64ed6ce8d4e2a5e6e795292355dc404b8a1cb7cd47/tiara-1.0.0-py3-none-any.whl (from https://pypi.org/simple/tiara/) (requires-python:>=3.7) 2022-10-30T09:37:38,671 Found link https://files.pythonhosted.org/packages/66/26/6cea439577415181f7071b87ec8bd8c4f402ec54115c6350a12001856339/tiara-1.0.0.tar.gz (from https://pypi.org/simple/tiara/) (requires-python:>=3.7), version: 1.0.0 2022-10-30T09:37:38,672 Skipping link: No binaries permitted for tiara: https://files.pythonhosted.org/packages/2e/15/1668ec53a767308a45138accf8dcfe63a35fb65c477d2daefbaed104819c/tiara-1.0.1-py3-none-any.whl (from https://pypi.org/simple/tiara/) (requires-python:>=3.7) 2022-10-30T09:37:38,672 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/22/28/f0fc176eee2cf4c41a44deaa97c4b1ef11c0df9af77d648dfdb88a2817ef/tiara-1.0.1-py3.9.egg (from https://pypi.org/simple/tiara/) (requires-python:>=3.7) 2022-10-30T09:37:38,674 Found link https://files.pythonhosted.org/packages/a0/a3/aa6e3ead76459402c1f9449776250615c5178066603f52a92b165bae95ae/tiara-1.0.1.tar.gz (from https://pypi.org/simple/tiara/) (requires-python:>=3.7), version: 1.0.1 2022-10-30T09:37:38,675 Skipping link: No binaries permitted for tiara: https://files.pythonhosted.org/packages/44/f6/a86c608edd000119299abbdfe63765081ae03c813fca0057cd6dc233e0f9/tiara-1.0.2-py3-none-any.whl (from https://pypi.org/simple/tiara/) (requires-python:>=3.7) 2022-10-30T09:37:38,676 Found link https://files.pythonhosted.org/packages/2d/d3/b4c6685c72ef68a1731a66e7f8d75c11f35268d26c5e6d733fc0c90cf33d/tiara-1.0.2.tar.gz (from https://pypi.org/simple/tiara/) (requires-python:>=3.7), version: 1.0.2 2022-10-30T09:37:38,677 Skipping link: No binaries permitted for tiara: https://files.pythonhosted.org/packages/bb/ef/1b3fac9bfdcaabdfacd9d5daf7aed5485fe61be4b2edde024514126b5def/tiara-1.0.3-py3-none-any.whl (from https://pypi.org/simple/tiara/) (requires-python:>=3.7,<3.10) 2022-10-30T09:37:38,678 Found link https://files.pythonhosted.org/packages/2e/b4/33c52258af0a9db829313394c3ace6aaff9a2ba65ebd3ff6760c55802e27/tiara-1.0.3.tar.gz (from https://pypi.org/simple/tiara/) (requires-python:>=3.7,<3.10), version: 1.0.3 2022-10-30T09:37:38,679 Fetching project page and analyzing links: https://www.piwheels.org/simple/tiara/ 2022-10-30T09:37:38,680 Getting page https://www.piwheels.org/simple/tiara/ 2022-10-30T09:37:38,682 Found index url https://www.piwheels.org/simple 2022-10-30T09:37:38,902 Fetched page https://www.piwheels.org/simple/tiara/ as text/html 2022-10-30T09:37:38,907 Skipping link: No binaries permitted for tiara: https://www.piwheels.org/simple/tiara/tiara-1.0.2-py3-none-any.whl#sha256=27ee174b6f2a80a56619ead44a0525e5e69852097b75983a1eb89523023fc760 (from https://www.piwheels.org/simple/tiara/) (requires-python:>=3.7) 2022-10-30T09:37:38,908 Skipping link: No binaries permitted for tiara: https://www.piwheels.org/simple/tiara/tiara-1.0.1-py3-none-any.whl#sha256=6f922790d01fa31392c012ada8fc615e7c8559b8e57fce7d58849579c2415d57 (from https://www.piwheels.org/simple/tiara/) (requires-python:>=3.7) 2022-10-30T09:37:38,908 Skipping link: No binaries permitted for tiara: https://www.piwheels.org/simple/tiara/tiara-1.0.0-py3-none-any.whl#sha256=a29bc8fbc08f77490fb850b4fa93c49c74c6a7c1442fba058ec4fc54479ae361 (from https://www.piwheels.org/simple/tiara/) (requires-python:>=3.7) 2022-10-30T09:37:38,909 Skipping link: not a file: https://www.piwheels.org/simple/tiara/ 2022-10-30T09:37:38,909 Skipping link: not a file: https://pypi.org/simple/tiara/ 2022-10-30T09:37:38,940 Given no hashes to check 1 links for project 'tiara': discarding no candidates 2022-10-30T09:37:38,967 Collecting tiara==1.0.3 2022-10-30T09:37:38,972 Created temporary directory: /tmp/pip-unpack-2subd0l3 2022-10-30T09:37:42,335 Downloading tiara-1.0.3.tar.gz (102.4 MB) 2022-10-30T09:38:14,326 Added tiara==1.0.3 from https://files.pythonhosted.org/packages/2e/b4/33c52258af0a9db829313394c3ace6aaff9a2ba65ebd3ff6760c55802e27/tiara-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-jwz7ni5w' 2022-10-30T09:38:14,337 Created temporary directory: /tmp/pip-build-env-yt0zj6jf 2022-10-30T09:38:14,348 Installing build dependencies: started 2022-10-30T09:38:14,350 Running command pip subprocess to install build dependencies 2022-10-30T09:38:17,008 Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2022-10-30T09:38:17,752 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-30T09:38:17,806 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-30T09:38:21,543 Collecting setuptools>=61.0 2022-10-30T09:38:21,823 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.0-py3-none-any.whl (1.2 MB) 2022-10-30T09:38:26,470 Installing collected packages: setuptools 2022-10-30T09:38:31,291 Successfully installed setuptools-65.5.0 2022-10-30T09:38:31,720 Installing build dependencies: finished with status 'done' 2022-10-30T09:38:31,733 Getting requirements to build wheel: started 2022-10-30T09:38:31,735 Running command Getting requirements to build wheel 2022-10-30T09:38:34,053 running egg_info 2022-10-30T09:38:34,064 writing tiara.egg-info/PKG-INFO 2022-10-30T09:38:34,069 writing dependency_links to tiara.egg-info/dependency_links.txt 2022-10-30T09:38:34,073 writing entry points to tiara.egg-info/entry_points.txt 2022-10-30T09:38:34,076 writing requirements to tiara.egg-info/requires.txt 2022-10-30T09:38:34,079 writing top-level names to tiara.egg-info/top_level.txt 2022-10-30T09:38:34,118 reading manifest file 'tiara.egg-info/SOURCES.txt' 2022-10-30T09:38:34,135 reading manifest template 'MANIFEST.in' 2022-10-30T09:38:34,137 /tmp/pip-build-env-yt0zj6jf/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:196: UserWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2022-10-30T09:38:34,137 warnings.warn(msg) 2022-10-30T09:38:34,138 warning: no files found matching 'LICENSE.txt' 2022-10-30T09:38:34,174 warning: no previously-included files matching '*_fr.fasta' found anywhere in distribution 2022-10-30T09:38:34,175 adding license file 'LICENSE' 2022-10-30T09:38:34,187 writing manifest file 'tiara.egg-info/SOURCES.txt' 2022-10-30T09:38:34,418 Getting requirements to build wheel: finished with status 'done' 2022-10-30T09:38:34,443 Installing backend dependencies: started 2022-10-30T09:38:34,445 Running command pip subprocess to install backend dependencies 2022-10-30T09:38:37,191 Using pip 22.3 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2022-10-30T09:38:37,950 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-30T09:38:38,004 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-30T09:38:38,839 Collecting wheel 2022-10-30T09:38:38,877 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-10-30T09:38:42,745 Installing collected packages: wheel 2022-10-30T09:38:43,024 Creating /tmp/pip-build-env-yt0zj6jf/normal/bin 2022-10-30T09:38:43,029 changing mode of /tmp/pip-build-env-yt0zj6jf/normal/bin/wheel to 755 2022-10-30T09:38:43,056 Successfully installed wheel-0.37.1 2022-10-30T09:38:43,425 Installing backend dependencies: finished with status 'done' 2022-10-30T09:38:43,430 Created temporary directory: /tmp/pip-modern-metadata-3zm62lxz 2022-10-30T09:38:43,437 Preparing metadata (pyproject.toml): started 2022-10-30T09:38:43,439 Running command Preparing metadata (pyproject.toml) 2022-10-30T09:38:45,807 running dist_info 2022-10-30T09:38:45,820 creating /tmp/pip-modern-metadata-3zm62lxz/tiara.egg-info 2022-10-30T09:38:45,829 writing /tmp/pip-modern-metadata-3zm62lxz/tiara.egg-info/PKG-INFO 2022-10-30T09:38:45,834 writing dependency_links to /tmp/pip-modern-metadata-3zm62lxz/tiara.egg-info/dependency_links.txt 2022-10-30T09:38:45,839 writing entry points to /tmp/pip-modern-metadata-3zm62lxz/tiara.egg-info/entry_points.txt 2022-10-30T09:38:45,841 writing requirements to /tmp/pip-modern-metadata-3zm62lxz/tiara.egg-info/requires.txt 2022-10-30T09:38:45,843 writing top-level names to /tmp/pip-modern-metadata-3zm62lxz/tiara.egg-info/top_level.txt 2022-10-30T09:38:45,846 writing manifest file '/tmp/pip-modern-metadata-3zm62lxz/tiara.egg-info/SOURCES.txt' 2022-10-30T09:38:45,888 reading manifest file '/tmp/pip-modern-metadata-3zm62lxz/tiara.egg-info/SOURCES.txt' 2022-10-30T09:38:45,895 reading manifest template 'MANIFEST.in' 2022-10-30T09:38:45,897 /tmp/pip-build-env-yt0zj6jf/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:196: UserWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2022-10-30T09:38:45,897 warnings.warn(msg) 2022-10-30T09:38:45,897 warning: no files found matching 'LICENSE.txt' 2022-10-30T09:38:45,936 warning: no previously-included files matching '*_fr.fasta' found anywhere in distribution 2022-10-30T09:38:45,936 adding license file 'LICENSE' 2022-10-30T09:38:45,945 writing manifest file '/tmp/pip-modern-metadata-3zm62lxz/tiara.egg-info/SOURCES.txt' 2022-10-30T09:38:45,947 creating '/tmp/pip-modern-metadata-3zm62lxz/tiara-1.0.3.dist-info' 2022-10-30T09:38:46,044 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-30T09:38:46,292 Preparing metadata (pyproject.toml): finished with status 'done' 2022-10-30T09:38:46,308 Source in /tmp/pip-wheel-t0ht98_o/tiara_86d8afb48a3a47009f2c8d79238fcdbe has version 1.0.3, which satisfies requirement tiara==1.0.3 from https://files.pythonhosted.org/packages/2e/b4/33c52258af0a9db829313394c3ace6aaff9a2ba65ebd3ff6760c55802e27/tiara-1.0.3.tar.gz 2022-10-30T09:38:46,310 Removed tiara==1.0.3 from https://files.pythonhosted.org/packages/2e/b4/33c52258af0a9db829313394c3ace6aaff9a2ba65ebd3ff6760c55802e27/tiara-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-jwz7ni5w' 2022-10-30T09:38:46,325 Created temporary directory: /tmp/pip-unpack-oq_q895u 2022-10-30T09:38:46,326 Building wheels for collected packages: tiara 2022-10-30T09:38:46,336 Created temporary directory: /tmp/pip-wheel-9vh9o113 2022-10-30T09:38:46,337 Destination directory: /tmp/pip-wheel-9vh9o113 2022-10-30T09:38:46,342 Building wheel for tiara (pyproject.toml): started 2022-10-30T09:38:46,344 Running command Building wheel for tiara (pyproject.toml) 2022-10-30T09:38:48,547 running bdist_wheel 2022-10-30T09:38:48,578 running build 2022-10-30T09:38:48,578 running build_py 2022-10-30T09:38:48,589 creating build 2022-10-30T09:38:48,589 creating build/lib 2022-10-30T09:38:48,591 creating build/lib/tiara 2022-10-30T09:38:48,593 copying tiara/__init__.py -> build/lib/tiara 2022-10-30T09:38:48,596 copying tiara/constants.py -> build/lib/tiara 2022-10-30T09:38:48,600 copying tiara/params.py -> build/lib/tiara 2022-10-30T09:38:48,603 copying tiara/main.py -> build/lib/tiara 2022-10-30T09:38:48,609 creating build/lib/tiara/src 2022-10-30T09:38:48,610 copying tiara/src/prediction.py -> build/lib/tiara/src 2022-10-30T09:38:48,614 copying tiara/src/__init__.py -> build/lib/tiara/src 2022-10-30T09:38:48,617 copying tiara/src/bow.py -> build/lib/tiara/src 2022-10-30T09:38:48,620 copying tiara/src/models.py -> build/lib/tiara/src 2022-10-30T09:38:48,623 copying tiara/src/classification.py -> build/lib/tiara/src 2022-10-30T09:38:48,626 copying tiara/src/utilities.py -> build/lib/tiara/src 2022-10-30T09:38:48,630 copying tiara/src/transformations.py -> build/lib/tiara/src 2022-10-30T09:38:48,635 creating build/lib/tiara/models 2022-10-30T09:38:48,636 copying tiara/models/__init__.py -> build/lib/tiara/models 2022-10-30T09:38:48,640 creating build/lib/tiara/training 2022-10-30T09:38:48,642 copying tiara/training/__init__.py -> build/lib/tiara/training 2022-10-30T09:38:48,644 copying tiara/training/train_models.py -> build/lib/tiara/training 2022-10-30T09:38:48,648 copying tiara/training/train_tfidf.py -> build/lib/tiara/training 2022-10-30T09:38:48,651 copying tiara/training/hyperparameter_search_second_stage.py -> build/lib/tiara/training 2022-10-30T09:38:48,655 copying tiara/training/hyperparameter_search_first_stage.py -> build/lib/tiara/training 2022-10-30T09:38:48,660 creating build/lib/tiara/test 2022-10-30T09:38:48,661 copying tiara/test/__init__.py -> build/lib/tiara/test 2022-10-30T09:38:48,664 copying tiara/test/test.py -> build/lib/tiara/test 2022-10-30T09:38:48,668 creating build/lib/tiara/models/tfidf-models 2022-10-30T09:38:48,669 copying tiara/models/tfidf-models/__init__.py -> build/lib/tiara/models/tfidf-models 2022-10-30T09:38:48,673 creating build/lib/tiara/models/nnet-models 2022-10-30T09:38:48,674 copying tiara/models/nnet-models/__init__.py -> build/lib/tiara/models/nnet-models 2022-10-30T09:38:48,676 running egg_info 2022-10-30T09:38:48,695 writing tiara.egg-info/PKG-INFO 2022-10-30T09:38:48,698 writing dependency_links to tiara.egg-info/dependency_links.txt 2022-10-30T09:38:48,702 writing entry points to tiara.egg-info/entry_points.txt 2022-10-30T09:38:48,705 writing requirements to tiara.egg-info/requires.txt 2022-10-30T09:38:48,706 writing top-level names to tiara.egg-info/top_level.txt 2022-10-30T09:38:48,729 reading manifest file 'tiara.egg-info/SOURCES.txt' 2022-10-30T09:38:48,738 reading manifest template 'MANIFEST.in' 2022-10-30T09:38:48,740 /tmp/pip-build-env-yt0zj6jf/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:196: UserWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2022-10-30T09:38:48,740 warnings.warn(msg) 2022-10-30T09:38:48,741 warning: no files found matching 'LICENSE.txt' 2022-10-30T09:38:48,773 warning: no previously-included files matching '*_fr.fasta' found anywhere in distribution 2022-10-30T09:38:48,774 adding license file 'LICENSE' 2022-10-30T09:38:48,786 writing manifest file 'tiara.egg-info/SOURCES.txt' 2022-10-30T09:38:48,807 copying tiara/test/.DS_Store -> build/lib/tiara/test 2022-10-30T09:38:48,811 creating build/lib/tiara/test/test_data 2022-10-30T09:38:48,813 copying tiara/test/test_data/archaea_fr.fasta.gz -> build/lib/tiara/test/test_data 2022-10-30T09:38:48,848 copying tiara/test/test_data/archaea_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:48,853 copying tiara/test/test_data/bacteria_fr.fasta.gz -> build/lib/tiara/test/test_data 2022-10-30T09:38:48,891 copying tiara/test/test_data/bacteria_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:48,897 copying tiara/test/test_data/eukarya_fr.fasta.gz -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,244 copying tiara/test/test_data/eukarya_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,260 copying tiara/test/test_data/log_archaea_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,264 copying tiara/test/test_data/log_archea_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,268 copying tiara/test/test_data/log_bacteria_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,272 copying tiara/test/test_data/log_eukarya_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,279 copying tiara/test/test_data/log_mitochondria_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,283 copying tiara/test/test_data/log_plast_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,288 copying tiara/test/test_data/mitochondria_fr.fasta.gz -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,298 copying tiara/test/test_data/mitochondria_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,302 copying tiara/test/test_data/plast_fr.fasta.gz -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,309 copying tiara/test/test_data/plast_out.txt -> build/lib/tiara/test/test_data 2022-10-30T09:38:49,312 creating build/lib/tiara/models/tfidf-models/k4-first-stage 2022-10-30T09:38:49,314 copying tiara/models/tfidf-models/k4-first-stage/model.npy -> build/lib/tiara/models/tfidf-models/k4-first-stage 2022-10-30T09:38:49,318 copying tiara/models/tfidf-models/k4-first-stage/params.txt -> build/lib/tiara/models/tfidf-models/k4-first-stage 2022-10-30T09:38:49,322 creating build/lib/tiara/models/tfidf-models/k4-second-stage 2022-10-30T09:38:49,324 copying tiara/models/tfidf-models/k4-second-stage/model.npy -> build/lib/tiara/models/tfidf-models/k4-second-stage 2022-10-30T09:38:49,328 copying tiara/models/tfidf-models/k4-second-stage/params.txt -> build/lib/tiara/models/tfidf-models/k4-second-stage 2022-10-30T09:38:49,331 creating build/lib/tiara/models/tfidf-models/k5-first-stage 2022-10-30T09:38:49,333 copying tiara/models/tfidf-models/k5-first-stage/model.npy -> build/lib/tiara/models/tfidf-models/k5-first-stage 2022-10-30T09:38:49,337 copying tiara/models/tfidf-models/k5-first-stage/params.txt -> build/lib/tiara/models/tfidf-models/k5-first-stage 2022-10-30T09:38:49,341 creating build/lib/tiara/models/tfidf-models/k5-second-stage 2022-10-30T09:38:49,343 copying tiara/models/tfidf-models/k5-second-stage/model.npy -> build/lib/tiara/models/tfidf-models/k5-second-stage 2022-10-30T09:38:49,348 copying tiara/models/tfidf-models/k5-second-stage/params.txt -> build/lib/tiara/models/tfidf-models/k5-second-stage 2022-10-30T09:38:49,351 creating build/lib/tiara/models/tfidf-models/k6-first-stage 2022-10-30T09:38:49,353 copying tiara/models/tfidf-models/k6-first-stage/model.npy -> build/lib/tiara/models/tfidf-models/k6-first-stage 2022-10-30T09:38:49,358 copying tiara/models/tfidf-models/k6-first-stage/params.txt -> build/lib/tiara/models/tfidf-models/k6-first-stage 2022-10-30T09:38:49,362 creating build/lib/tiara/models/tfidf-models/k6-second-stage 2022-10-30T09:38:49,364 copying tiara/models/tfidf-models/k6-second-stage/model.npy -> build/lib/tiara/models/tfidf-models/k6-second-stage 2022-10-30T09:38:49,369 copying tiara/models/tfidf-models/k6-second-stage/params.txt -> build/lib/tiara/models/tfidf-models/k6-second-stage 2022-10-30T09:38:49,373 creating build/lib/tiara/models/tfidf-models/k7-second-stage 2022-10-30T09:38:49,375 copying tiara/models/tfidf-models/k7-second-stage/model.npy -> build/lib/tiara/models/tfidf-models/k7-second-stage 2022-10-30T09:38:49,383 copying tiara/models/tfidf-models/k7-second-stage/params.txt -> build/lib/tiara/models/tfidf-models/k7-second-stage 2022-10-30T09:38:49,387 copying tiara/models/nnet-models/first_nnet_kmer_4.pkl -> build/lib/tiara/models/nnet-models 2022-10-30T09:38:50,059 copying tiara/models/nnet-models/first_nnet_kmer_5.pkl -> build/lib/tiara/models/nnet-models 2022-10-30T09:38:51,292 copying tiara/models/nnet-models/first_nnet_kmer_6.pkl -> build/lib/tiara/models/nnet-models 2022-10-30T09:38:52,780 copying tiara/models/nnet-models/second_nnet_kmer_4.pkl -> build/lib/tiara/models/nnet-models 2022-10-30T09:38:52,809 copying tiara/models/nnet-models/second_nnet_kmer_5.pkl -> build/lib/tiara/models/nnet-models 2022-10-30T09:38:52,879 copying tiara/models/nnet-models/second_nnet_kmer_6.pkl -> build/lib/tiara/models/nnet-models 2022-10-30T09:38:53,033 copying tiara/models/nnet-models/second_nnet_kmer_7.pkl -> build/lib/tiara/models/nnet-models 2022-10-30T09:38:53,467 installing to build/bdist.linux-armv7l/wheel 2022-10-30T09:38:53,467 running install 2022-10-30T09:38:53,530 running install_lib 2022-10-30T09:38:53,540 creating build/bdist.linux-armv7l 2022-10-30T09:38:53,541 creating build/bdist.linux-armv7l/wheel 2022-10-30T09:38:53,544 creating build/bdist.linux-armv7l/wheel/tiara 2022-10-30T09:38:53,547 creating build/bdist.linux-armv7l/wheel/tiara/src 2022-10-30T09:38:53,549 copying build/lib/tiara/src/prediction.py -> build/bdist.linux-armv7l/wheel/tiara/src 2022-10-30T09:38:53,553 copying build/lib/tiara/src/__init__.py -> build/bdist.linux-armv7l/wheel/tiara/src 2022-10-30T09:38:53,556 copying build/lib/tiara/src/bow.py -> build/bdist.linux-armv7l/wheel/tiara/src 2022-10-30T09:38:53,560 copying build/lib/tiara/src/models.py -> build/bdist.linux-armv7l/wheel/tiara/src 2022-10-30T09:38:53,563 copying build/lib/tiara/src/classification.py -> build/bdist.linux-armv7l/wheel/tiara/src 2022-10-30T09:38:53,567 copying build/lib/tiara/src/utilities.py -> build/bdist.linux-armv7l/wheel/tiara/src 2022-10-30T09:38:53,571 copying build/lib/tiara/src/transformations.py -> build/bdist.linux-armv7l/wheel/tiara/src 2022-10-30T09:38:53,576 copying build/lib/tiara/__init__.py -> build/bdist.linux-armv7l/wheel/tiara 2022-10-30T09:38:53,580 creating build/bdist.linux-armv7l/wheel/tiara/models 2022-10-30T09:38:53,582 copying build/lib/tiara/models/__init__.py -> build/bdist.linux-armv7l/wheel/tiara/models 2022-10-30T09:38:53,586 creating build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models 2022-10-30T09:38:53,588 copying build/lib/tiara/models/tfidf-models/__init__.py -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models 2022-10-30T09:38:53,592 creating build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k6-second-stage 2022-10-30T09:38:53,594 copying build/lib/tiara/models/tfidf-models/k6-second-stage/params.txt -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k6-second-stage 2022-10-30T09:38:53,598 copying build/lib/tiara/models/tfidf-models/k6-second-stage/model.npy -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k6-second-stage 2022-10-30T09:38:53,604 creating build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k6-first-stage 2022-10-30T09:38:53,606 copying build/lib/tiara/models/tfidf-models/k6-first-stage/params.txt -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k6-first-stage 2022-10-30T09:38:53,609 copying build/lib/tiara/models/tfidf-models/k6-first-stage/model.npy -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k6-first-stage 2022-10-30T09:38:53,616 creating build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k7-second-stage 2022-10-30T09:38:53,617 copying build/lib/tiara/models/tfidf-models/k7-second-stage/params.txt -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k7-second-stage 2022-10-30T09:38:53,621 copying build/lib/tiara/models/tfidf-models/k7-second-stage/model.npy -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k7-second-stage 2022-10-30T09:38:53,629 creating build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k5-second-stage 2022-10-30T09:38:53,631 copying build/lib/tiara/models/tfidf-models/k5-second-stage/params.txt -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k5-second-stage 2022-10-30T09:38:53,635 copying build/lib/tiara/models/tfidf-models/k5-second-stage/model.npy -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k5-second-stage 2022-10-30T09:38:53,639 creating build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k5-first-stage 2022-10-30T09:38:53,641 copying build/lib/tiara/models/tfidf-models/k5-first-stage/params.txt -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k5-first-stage 2022-10-30T09:38:53,645 copying build/lib/tiara/models/tfidf-models/k5-first-stage/model.npy -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k5-first-stage 2022-10-30T09:38:53,650 creating build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k4-second-stage 2022-10-30T09:38:53,651 copying build/lib/tiara/models/tfidf-models/k4-second-stage/params.txt -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k4-second-stage 2022-10-30T09:38:53,655 copying build/lib/tiara/models/tfidf-models/k4-second-stage/model.npy -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k4-second-stage 2022-10-30T09:38:53,659 creating build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k4-first-stage 2022-10-30T09:38:53,661 copying build/lib/tiara/models/tfidf-models/k4-first-stage/params.txt -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k4-first-stage 2022-10-30T09:38:53,664 copying build/lib/tiara/models/tfidf-models/k4-first-stage/model.npy -> build/bdist.linux-armv7l/wheel/tiara/models/tfidf-models/k4-first-stage 2022-10-30T09:38:53,669 creating build/bdist.linux-armv7l/wheel/tiara/models/nnet-models 2022-10-30T09:38:53,670 copying build/lib/tiara/models/nnet-models/first_nnet_kmer_4.pkl -> build/bdist.linux-armv7l/wheel/tiara/models/nnet-models 2022-10-30T09:38:54,590 copying build/lib/tiara/models/nnet-models/__init__.py -> build/bdist.linux-armv7l/wheel/tiara/models/nnet-models 2022-10-30T09:38:54,593 copying build/lib/tiara/models/nnet-models/second_nnet_kmer_5.pkl -> build/bdist.linux-armv7l/wheel/tiara/models/nnet-models 2022-10-30T09:38:54,668 copying build/lib/tiara/models/nnet-models/first_nnet_kmer_6.pkl -> build/bdist.linux-armv7l/wheel/tiara/models/nnet-models 2022-10-30T09:38:56,356 copying build/lib/tiara/models/nnet-models/second_nnet_kmer_4.pkl -> build/bdist.linux-armv7l/wheel/tiara/models/nnet-models 2022-10-30T09:38:56,379 copying build/lib/tiara/models/nnet-models/second_nnet_kmer_7.pkl -> build/bdist.linux-armv7l/wheel/tiara/models/nnet-models 2022-10-30T09:38:56,789 copying build/lib/tiara/models/nnet-models/second_nnet_kmer_6.pkl -> build/bdist.linux-armv7l/wheel/tiara/models/nnet-models 2022-10-30T09:38:56,987 copying build/lib/tiara/models/nnet-models/first_nnet_kmer_5.pkl -> build/bdist.linux-armv7l/wheel/tiara/models/nnet-models 2022-10-30T09:38:58,230 copying build/lib/tiara/constants.py -> build/bdist.linux-armv7l/wheel/tiara 2022-10-30T09:38:58,234 copying build/lib/tiara/params.py -> build/bdist.linux-armv7l/wheel/tiara 2022-10-30T09:38:58,239 copying build/lib/tiara/main.py -> build/bdist.linux-armv7l/wheel/tiara 2022-10-30T09:38:58,245 creating build/bdist.linux-armv7l/wheel/tiara/training 2022-10-30T09:38:58,247 copying build/lib/tiara/training/__init__.py -> build/bdist.linux-armv7l/wheel/tiara/training 2022-10-30T09:38:58,251 copying build/lib/tiara/training/train_models.py -> build/bdist.linux-armv7l/wheel/tiara/training 2022-10-30T09:38:58,257 copying build/lib/tiara/training/train_tfidf.py -> build/bdist.linux-armv7l/wheel/tiara/training 2022-10-30T09:38:58,261 copying build/lib/tiara/training/hyperparameter_search_second_stage.py -> build/bdist.linux-armv7l/wheel/tiara/training 2022-10-30T09:38:58,266 copying build/lib/tiara/training/hyperparameter_search_first_stage.py -> build/bdist.linux-armv7l/wheel/tiara/training 2022-10-30T09:38:58,272 creating build/bdist.linux-armv7l/wheel/tiara/test 2022-10-30T09:38:58,274 copying build/lib/tiara/test/__init__.py -> build/bdist.linux-armv7l/wheel/tiara/test 2022-10-30T09:38:58,278 copying build/lib/tiara/test/.DS_Store -> build/bdist.linux-armv7l/wheel/tiara/test 2022-10-30T09:38:58,285 creating build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,287 copying build/lib/tiara/test/test_data/plast_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,291 copying build/lib/tiara/test/test_data/bacteria_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,297 copying build/lib/tiara/test/test_data/bacteria_fr.fasta.gz -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,337 copying build/lib/tiara/test/test_data/archaea_fr.fasta.gz -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,373 copying build/lib/tiara/test/test_data/log_archea_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,377 copying build/lib/tiara/test/test_data/log_bacteria_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,381 copying build/lib/tiara/test/test_data/mitochondria_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,385 copying build/lib/tiara/test/test_data/log_mitochondria_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,390 copying build/lib/tiara/test/test_data/log_plast_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,394 copying build/lib/tiara/test/test_data/mitochondria_fr.fasta.gz -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,402 copying build/lib/tiara/test/test_data/eukarya_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,420 copying build/lib/tiara/test/test_data/eukarya_fr.fasta.gz -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,777 copying build/lib/tiara/test/test_data/archaea_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,782 copying build/lib/tiara/test/test_data/log_archaea_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,785 copying build/lib/tiara/test/test_data/plast_fr.fasta.gz -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,791 copying build/lib/tiara/test/test_data/log_eukarya_out.txt -> build/bdist.linux-armv7l/wheel/tiara/test/test_data 2022-10-30T09:38:58,794 copying build/lib/tiara/test/test.py -> build/bdist.linux-armv7l/wheel/tiara/test 2022-10-30T09:38:58,797 running install_egg_info 2022-10-30T09:38:58,807 Copying tiara.egg-info to build/bdist.linux-armv7l/wheel/tiara-1.0.3-py3.7.egg-info 2022-10-30T09:38:58,831 running install_scripts 2022-10-30T09:38:58,889 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-30T09:38:58,899 creating build/bdist.linux-armv7l/wheel/tiara-1.0.3.dist-info/WHEEL 2022-10-30T09:38:58,903 creating '/tmp/pip-wheel-9vh9o113/tmp7j_0ny0t/tiara-1.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-30T09:38:58,908 adding 'tiara/__init__.py' 2022-10-30T09:38:58,910 adding 'tiara/constants.py' 2022-10-30T09:38:58,915 adding 'tiara/main.py' 2022-10-30T09:38:58,918 adding 'tiara/params.py' 2022-10-30T09:38:58,921 adding 'tiara/models/__init__.py' 2022-10-30T09:38:58,925 adding 'tiara/models/nnet-models/__init__.py' 2022-10-30T09:39:05,724 adding 'tiara/models/nnet-models/first_nnet_kmer_4.pkl' 2022-10-30T09:39:15,156 adding 'tiara/models/nnet-models/first_nnet_kmer_5.pkl' 2022-10-30T09:39:30,903 adding 'tiara/models/nnet-models/first_nnet_kmer_6.pkl' 2022-10-30T09:39:32,065 adding 'tiara/models/nnet-models/second_nnet_kmer_4.pkl' 2022-10-30T09:39:32,504 adding 'tiara/models/nnet-models/second_nnet_kmer_5.pkl' 2022-10-30T09:39:34,095 adding 'tiara/models/nnet-models/second_nnet_kmer_6.pkl' 2022-10-30T09:39:38,505 adding 'tiara/models/nnet-models/second_nnet_kmer_7.pkl' 2022-10-30T09:39:38,678 adding 'tiara/models/tfidf-models/__init__.py' 2022-10-30T09:39:38,682 adding 'tiara/models/tfidf-models/k4-first-stage/model.npy' 2022-10-30T09:39:38,685 adding 'tiara/models/tfidf-models/k4-first-stage/params.txt' 2022-10-30T09:39:38,689 adding 'tiara/models/tfidf-models/k4-second-stage/model.npy' 2022-10-30T09:39:38,692 adding 'tiara/models/tfidf-models/k4-second-stage/params.txt' 2022-10-30T09:39:38,697 adding 'tiara/models/tfidf-models/k5-first-stage/model.npy' 2022-10-30T09:39:38,700 adding 'tiara/models/tfidf-models/k5-first-stage/params.txt' 2022-10-30T09:39:38,704 adding 'tiara/models/tfidf-models/k5-second-stage/model.npy' 2022-10-30T09:39:38,707 adding 'tiara/models/tfidf-models/k5-second-stage/params.txt' 2022-10-30T09:39:38,715 adding 'tiara/models/tfidf-models/k6-first-stage/model.npy' 2022-10-30T09:39:38,718 adding 'tiara/models/tfidf-models/k6-first-stage/params.txt' 2022-10-30T09:39:38,728 adding 'tiara/models/tfidf-models/k6-second-stage/model.npy' 2022-10-30T09:39:38,731 adding 'tiara/models/tfidf-models/k6-second-stage/params.txt' 2022-10-30T09:39:38,761 adding 'tiara/models/tfidf-models/k7-second-stage/model.npy' 2022-10-30T09:39:38,765 adding 'tiara/models/tfidf-models/k7-second-stage/params.txt' 2022-10-30T09:39:38,770 adding 'tiara/src/__init__.py' 2022-10-30T09:39:38,773 adding 'tiara/src/bow.py' 2022-10-30T09:39:38,777 adding 'tiara/src/classification.py' 2022-10-30T09:39:38,779 adding 'tiara/src/models.py' 2022-10-30T09:39:38,782 adding 'tiara/src/prediction.py' 2022-10-30T09:39:38,786 adding 'tiara/src/transformations.py' 2022-10-30T09:39:38,789 adding 'tiara/src/utilities.py' 2022-10-30T09:39:38,793 adding 'tiara/test/.DS_Store' 2022-10-30T09:39:38,795 adding 'tiara/test/__init__.py' 2022-10-30T09:39:38,797 adding 'tiara/test/test.py' 2022-10-30T09:39:38,966 adding 'tiara/test/test_data/archaea_fr.fasta.gz' 2022-10-30T09:39:38,982 adding 'tiara/test/test_data/archaea_out.txt' 2022-10-30T09:39:39,176 adding 'tiara/test/test_data/bacteria_fr.fasta.gz' 2022-10-30T09:39:39,194 adding 'tiara/test/test_data/bacteria_out.txt' 2022-10-30T09:39:41,154 adding 'tiara/test/test_data/eukarya_fr.fasta.gz' 2022-10-30T09:39:41,317 adding 'tiara/test/test_data/eukarya_out.txt' 2022-10-30T09:39:41,325 adding 'tiara/test/test_data/log_archaea_out.txt' 2022-10-30T09:39:41,327 adding 'tiara/test/test_data/log_archea_out.txt' 2022-10-30T09:39:41,329 adding 'tiara/test/test_data/log_bacteria_out.txt' 2022-10-30T09:39:41,331 adding 'tiara/test/test_data/log_eukarya_out.txt' 2022-10-30T09:39:41,334 adding 'tiara/test/test_data/log_mitochondria_out.txt' 2022-10-30T09:39:41,336 adding 'tiara/test/test_data/log_plast_out.txt' 2022-10-30T09:39:41,355 adding 'tiara/test/test_data/mitochondria_fr.fasta.gz' 2022-10-30T09:39:41,359 adding 'tiara/test/test_data/mitochondria_out.txt' 2022-10-30T09:39:41,370 adding 'tiara/test/test_data/plast_fr.fasta.gz' 2022-10-30T09:39:41,373 adding 'tiara/test/test_data/plast_out.txt' 2022-10-30T09:39:41,377 adding 'tiara/training/__init__.py' 2022-10-30T09:39:41,380 adding 'tiara/training/hyperparameter_search_first_stage.py' 2022-10-30T09:39:41,384 adding 'tiara/training/hyperparameter_search_second_stage.py' 2022-10-30T09:39:41,387 adding 'tiara/training/train_models.py' 2022-10-30T09:39:41,389 adding 'tiara/training/train_tfidf.py' 2022-10-30T09:39:41,394 adding 'tiara-1.0.3.dist-info/LICENSE' 2022-10-30T09:39:41,397 adding 'tiara-1.0.3.dist-info/METADATA' 2022-10-30T09:39:41,398 adding 'tiara-1.0.3.dist-info/WHEEL' 2022-10-30T09:39:41,400 adding 'tiara-1.0.3.dist-info/entry_points.txt' 2022-10-30T09:39:41,402 adding 'tiara-1.0.3.dist-info/top_level.txt' 2022-10-30T09:39:41,404 adding 'tiara-1.0.3.dist-info/RECORD' 2022-10-30T09:39:41,978 removing build/bdist.linux-armv7l/wheel 2022-10-30T09:39:42,115 /tmp/pip-build-env-yt0zj6jf/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tiara.test.test_data' as data is deprecated, please list it in `packages`. 2022-10-30T09:39:42,115 !! 2022-10-30T09:39:42,117 ############################ 2022-10-30T09:39:42,117 # Package would be ignored # 2022-10-30T09:39:42,117 ############################ 2022-10-30T09:39:42,118 Python recognizes 'tiara.test.test_data' as an importable package, 2022-10-30T09:39:42,118 but it is not listed in the `packages` configuration of setuptools. 2022-10-30T09:39:42,119 'tiara.test.test_data' has been automatically added to the distribution only 2022-10-30T09:39:42,119 because it may contain data files, but this behavior is likely to change 2022-10-30T09:39:42,120 in future versions of setuptools (and therefore is considered deprecated). 2022-10-30T09:39:42,121 Please make sure that 'tiara.test.test_data' is included as a package by using 2022-10-30T09:39:42,121 the `packages` configuration field or the proper discovery methods 2022-10-30T09:39:42,122 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-30T09:39:42,122 instead of `find_packages(...)`/`find:`). 2022-10-30T09:39:42,124 You can read more about "package discovery" and "data files" on setuptools 2022-10-30T09:39:42,124 documentation page. 2022-10-30T09:39:42,125 !! 2022-10-30T09:39:42,126 check.warn(importable) 2022-10-30T09:39:42,350 Building wheel for tiara (pyproject.toml): finished with status 'done' 2022-10-30T09:39:48,178 Created wheel for tiara: filename=tiara-1.0.3-py3-none-any.whl size=102449168 sha256=73bc9a219c19427bbb098b1de2ae1fb3b4d6ae4eeb7603c9e4e087e2b2850818 2022-10-30T09:39:48,181 Stored in directory: /tmp/pip-ephem-wheel-cache-jnckwvom/wheels/ce/79/a4/6afd3da866ee05ff81540a8e85d64a04b1a59a6eee3ea06a04 2022-10-30T09:39:48,330 Successfully built tiara 2022-10-30T09:39:55,386 Removed build tracker: '/tmp/pip-build-tracker-jwz7ni5w'