2022-10-30T21:08:42,833 Created temporary directory: /tmp/pip-ephem-wheel-cache-x12j6on7 2022-10-30T21:08:42,838 Created temporary directory: /tmp/pip-build-tracker-b2m6ofep 2022-10-30T21:08:42,839 Initialized build tracking at /tmp/pip-build-tracker-b2m6ofep 2022-10-30T21:08:42,839 Created build tracker: /tmp/pip-build-tracker-b2m6ofep 2022-10-30T21:08:42,839 Entered build tracker: /tmp/pip-build-tracker-b2m6ofep 2022-10-30T21:08:42,841 Created temporary directory: /tmp/pip-wheel-bp2nsdq7 2022-10-30T21:08:42,848 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-30T21:08:42,853 Created temporary directory: /tmp/pip-ephem-wheel-cache-f6cpijo0 2022-10-30T21:08:42,910 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-30T21:08:42,917 2 location(s) to search for versions of soursop: 2022-10-30T21:08:42,917 * https://pypi.org/simple/soursop/ 2022-10-30T21:08:42,917 * https://www.piwheels.org/simple/soursop/ 2022-10-30T21:08:42,918 Fetching project page and analyzing links: https://pypi.org/simple/soursop/ 2022-10-30T21:08:42,919 Getting page https://pypi.org/simple/soursop/ 2022-10-30T21:08:42,922 Found index url https://pypi.org/simple 2022-10-30T21:08:43,144 Fetched page https://pypi.org/simple/soursop/ as application/vnd.pypi.simple.v1+json 2022-10-30T21:08:43,148 Found link https://files.pythonhosted.org/packages/9d/4f/ddf85b2a407fb41c9fd04f26f2e8761c1d31c43b42fc6828a8bf18145f89/soursop-0.1.6.tar.gz (from https://pypi.org/simple/soursop/), version: 0.1.6 2022-10-30T21:08:43,149 Found link https://files.pythonhosted.org/packages/d9/67/f6e2c070bdb22cb1bd094c33934099f9aab0a3ee0034b0893d238dedc0d4/soursop-0.1.9.tar.gz (from https://pypi.org/simple/soursop/), version: 0.1.9 2022-10-30T21:08:43,150 Found link https://files.pythonhosted.org/packages/d0/28/a4e1b5066e10ff76cbce5029c92c9ba6b0b85d97d8ffd548df453b40f251/soursop-0.1.9.2.tar.gz (from https://pypi.org/simple/soursop/), version: 0.1.9.2 2022-10-30T21:08:43,150 Found link https://files.pythonhosted.org/packages/06/82/f60f9e8d635865a8c5a901dcdf07b976757bae53999d55ee8ba779550c9b/soursop-0.2.1.tar.gz (from https://pypi.org/simple/soursop/), version: 0.2.1 2022-10-30T21:08:43,151 Found link https://files.pythonhosted.org/packages/fb/54/e5eea4c8b537346c5ef3fd71c1fbebc95808d69705c1889078fb9d03fae1/soursop-0.2.2.tar.gz (from https://pypi.org/simple/soursop/), version: 0.2.2 2022-10-30T21:08:43,152 Fetching project page and analyzing links: https://www.piwheels.org/simple/soursop/ 2022-10-30T21:08:43,153 Getting page https://www.piwheels.org/simple/soursop/ 2022-10-30T21:08:43,155 Found index url https://www.piwheels.org/simple 2022-10-30T21:08:43,379 Fetched page https://www.piwheels.org/simple/soursop/ as text/html 2022-10-30T21:08:43,384 Skipping link: No binaries permitted for soursop: https://www.piwheels.org/simple/soursop/soursop-0.2.1-py3-none-any.whl#sha256=a02cbaf07bdd2b38a4e83593f9c40be1ba59b43ed30a580a0cab670406fe4cc3 (from https://www.piwheels.org/simple/soursop/) 2022-10-30T21:08:43,385 Skipping link: No binaries permitted for soursop: https://www.piwheels.org/simple/soursop/soursop-0.1.9.2-py3-none-any.whl#sha256=38f02f96c99d39c61c4b99229ec88dc1eef708d72d3e4eeb32241e84492d5df2 (from https://www.piwheels.org/simple/soursop/) 2022-10-30T21:08:43,385 Skipping link: No binaries permitted for soursop: https://www.piwheels.org/simple/soursop/soursop-0.1.9-py3-none-any.whl#sha256=14de7fb938ee36216f3e7bd8b74f3f4e87dfe5388e46e0efd5ecf50c47a52aa9 (from https://www.piwheels.org/simple/soursop/) 2022-10-30T21:08:43,385 Skipping link: No binaries permitted for soursop: https://www.piwheels.org/simple/soursop/soursop-0.1.6-py3-none-any.whl#sha256=30d39e6ce8c0fe82b8f61b0bb9f711563583bc0b2b891e81c6c730b14371ab7e (from https://www.piwheels.org/simple/soursop/) 2022-10-30T21:08:43,386 Skipping link: not a file: https://www.piwheels.org/simple/soursop/ 2022-10-30T21:08:43,387 Skipping link: not a file: https://pypi.org/simple/soursop/ 2022-10-30T21:08:43,420 Given no hashes to check 1 links for project 'soursop': discarding no candidates 2022-10-30T21:08:43,454 Collecting soursop==0.2.2 2022-10-30T21:08:43,458 Created temporary directory: /tmp/pip-unpack-rgusd9w5 2022-10-30T21:08:43,989 Downloading soursop-0.2.2.tar.gz (471 kB) 2022-10-30T21:08:44,552 Added soursop==0.2.2 from https://files.pythonhosted.org/packages/fb/54/e5eea4c8b537346c5ef3fd71c1fbebc95808d69705c1889078fb9d03fae1/soursop-0.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-b2m6ofep' 2022-10-30T21:08:44,556 Running setup.py (path:/tmp/pip-wheel-bp2nsdq7/soursop_f97ce2fc6ccd466c8845c8de7909ef60/setup.py) egg_info for package soursop 2022-10-30T21:08:44,557 Created temporary directory: /tmp/pip-pip-egg-info-kmjzmyjb 2022-10-30T21:08:44,558 Preparing metadata (setup.py): started 2022-10-30T21:08:44,560 Running command python setup.py egg_info 2022-10-30T21:08:47,596 running egg_info 2022-10-30T21:08:47,601 creating /tmp/pip-pip-egg-info-kmjzmyjb/soursop.egg-info 2022-10-30T21:08:47,650 writing /tmp/pip-pip-egg-info-kmjzmyjb/soursop.egg-info/PKG-INFO 2022-10-30T21:08:47,654 writing dependency_links to /tmp/pip-pip-egg-info-kmjzmyjb/soursop.egg-info/dependency_links.txt 2022-10-30T21:08:47,659 writing requirements to /tmp/pip-pip-egg-info-kmjzmyjb/soursop.egg-info/requires.txt 2022-10-30T21:08:47,660 writing top-level names to /tmp/pip-pip-egg-info-kmjzmyjb/soursop.egg-info/top_level.txt 2022-10-30T21:08:47,663 writing manifest file '/tmp/pip-pip-egg-info-kmjzmyjb/soursop.egg-info/SOURCES.txt' 2022-10-30T21:08:47,771 reading manifest file '/tmp/pip-pip-egg-info-kmjzmyjb/soursop.egg-info/SOURCES.txt' 2022-10-30T21:08:47,774 reading manifest template 'MANIFEST.in' 2022-10-30T21:08:47,793 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:530: UserWarning: Normalizing 'v0.2.2' to '0.2.2' 2022-10-30T21:08:47,793 warnings.warn(tmpl.format(**locals())) 2022-10-30T21:08:47,793 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-10-30T21:08:47,794 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-10-30T21:08:47,795 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-10-30T21:08:47,822 warning: no files found matching '*include' under directory 'soursop/data' 2022-10-30T21:08:47,840 warning: no files found matching 'soursop/_version.py' under directory 'soursop/data' 2022-10-30T21:08:47,841 adding license file 'LICENSE' 2022-10-30T21:08:47,851 writing manifest file '/tmp/pip-pip-egg-info-kmjzmyjb/soursop.egg-info/SOURCES.txt' 2022-10-30T21:08:48,073 Preparing metadata (setup.py): finished with status 'done' 2022-10-30T21:08:48,085 Source in /tmp/pip-wheel-bp2nsdq7/soursop_f97ce2fc6ccd466c8845c8de7909ef60 has version 0.2.2, which satisfies requirement soursop==0.2.2 from https://files.pythonhosted.org/packages/fb/54/e5eea4c8b537346c5ef3fd71c1fbebc95808d69705c1889078fb9d03fae1/soursop-0.2.2.tar.gz 2022-10-30T21:08:48,087 Removed soursop==0.2.2 from https://files.pythonhosted.org/packages/fb/54/e5eea4c8b537346c5ef3fd71c1fbebc95808d69705c1889078fb9d03fae1/soursop-0.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-b2m6ofep' 2022-10-30T21:08:48,098 Created temporary directory: /tmp/pip-unpack-zu7s3l33 2022-10-30T21:08:48,099 Building wheels for collected packages: soursop 2022-10-30T21:08:48,108 Created temporary directory: /tmp/pip-wheel-3kjtnzdo 2022-10-30T21:08:48,109 Building wheel for soursop (setup.py): started 2022-10-30T21:08:48,111 Destination directory: /tmp/pip-wheel-3kjtnzdo 2022-10-30T21:08:48,111 Running command python setup.py bdist_wheel 2022-10-30T21:08:50,849 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:530: UserWarning: Normalizing 'v0.2.2' to '0.2.2' 2022-10-30T21:08:50,850 warnings.warn(tmpl.format(**locals())) 2022-10-30T21:08:51,045 running bdist_wheel 2022-10-30T21:08:51,189 running build 2022-10-30T21:08:51,190 running build_py 2022-10-30T21:08:51,203 creating build 2022-10-30T21:08:51,204 creating build/lib 2022-10-30T21:08:51,205 creating build/lib/soursop 2022-10-30T21:08:51,207 copying soursop/_version.py -> build/lib/soursop 2022-10-30T21:08:51,210 copying soursop/__init__.py -> build/lib/soursop 2022-10-30T21:08:51,213 copying soursop/ssprotein.py -> build/lib/soursop 2022-10-30T21:08:51,226 copying soursop/ssdata.py -> build/lib/soursop 2022-10-30T21:08:51,229 copying soursop/ssmutualinformation.py -> build/lib/soursop 2022-10-30T21:08:51,232 copying soursop/ssnmr.py -> build/lib/soursop 2022-10-30T21:08:51,237 copying soursop/configs.py -> build/lib/soursop 2022-10-30T21:08:51,240 copying soursop/ssutils.py -> build/lib/soursop 2022-10-30T21:08:51,244 copying soursop/sspolymer.py -> build/lib/soursop 2022-10-30T21:08:51,247 copying soursop/_internal_data.py -> build/lib/soursop 2022-10-30T21:08:51,250 copying soursop/ssio.py -> build/lib/soursop 2022-10-30T21:08:51,253 copying soursop/soursop.py -> build/lib/soursop 2022-10-30T21:08:51,256 copying soursop/ssexceptions.py -> build/lib/soursop 2022-10-30T21:08:51,259 copying soursop/sstools.py -> build/lib/soursop 2022-10-30T21:08:51,262 copying soursop/sstrajectory.py -> build/lib/soursop 2022-10-30T21:08:51,268 copying soursop/sspre.py -> build/lib/soursop 2022-10-30T21:08:51,272 copying soursop/sssampling.py -> build/lib/soursop 2022-10-30T21:08:51,277 creating build/lib/soursop/tests 2022-10-30T21:08:51,278 copying soursop/tests/__init__.py -> build/lib/soursop/tests 2022-10-30T21:08:51,281 copying soursop/tests/test_sstrajectory.py -> build/lib/soursop/tests 2022-10-30T21:08:51,286 copying soursop/tests/test_soursop.py -> build/lib/soursop/tests 2022-10-30T21:08:51,289 copying soursop/tests/test_numbering.py -> build/lib/soursop/tests 2022-10-30T21:08:51,292 copying soursop/tests/conftest.py -> build/lib/soursop/tests 2022-10-30T21:08:51,295 copying soursop/tests/test_ssnmr_extended.py -> build/lib/soursop/tests 2022-10-30T21:08:51,298 copying soursop/tests/test_ssnmr.py -> build/lib/soursop/tests 2022-10-30T21:08:51,302 copying soursop/tests/test_caps.py -> build/lib/soursop/tests 2022-10-30T21:08:51,305 copying soursop/tests/test_ssmutual_information.py -> build/lib/soursop/tests 2022-10-30T21:08:51,308 copying soursop/tests/test_ssutils.py -> build/lib/soursop/tests 2022-10-30T21:08:51,311 copying soursop/tests/test_ssproteins.py -> build/lib/soursop/tests 2022-10-30T21:08:51,316 running egg_info 2022-10-30T21:08:51,428 writing soursop.egg-info/PKG-INFO 2022-10-30T21:08:51,432 writing dependency_links to soursop.egg-info/dependency_links.txt 2022-10-30T21:08:51,435 writing requirements to soursop.egg-info/requires.txt 2022-10-30T21:08:51,437 writing top-level names to soursop.egg-info/top_level.txt 2022-10-30T21:08:51,495 reading manifest file 'soursop.egg-info/SOURCES.txt' 2022-10-30T21:08:51,503 reading manifest template 'MANIFEST.in' 2022-10-30T21:08:51,517 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-10-30T21:08:51,519 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-10-30T21:08:51,521 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-10-30T21:08:51,547 warning: no files found matching '*include' under directory 'soursop/data' 2022-10-30T21:08:51,563 warning: no files found matching 'soursop/_version.py' under directory 'soursop/data' 2022-10-30T21:08:51,564 adding license file 'LICENSE' 2022-10-30T21:08:51,577 writing manifest file 'soursop.egg-info/SOURCES.txt' 2022-10-30T21:08:51,583 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'soursop.data' as data is deprecated, please list it in `packages`. 2022-10-30T21:08:51,583 !! 2022-10-30T21:08:51,584 ############################ 2022-10-30T21:08:51,585 # Package would be ignored # 2022-10-30T21:08:51,585 ############################ 2022-10-30T21:08:51,585 Python recognizes 'soursop.data' as an importable package, 2022-10-30T21:08:51,585 but it is not listed in the `packages` configuration of setuptools. 2022-10-30T21:08:51,586 'soursop.data' has been automatically added to the distribution only 2022-10-30T21:08:51,586 because it may contain data files, but this behavior is likely to change 2022-10-30T21:08:51,587 in future versions of setuptools (and therefore is considered deprecated). 2022-10-30T21:08:51,587 Please make sure that 'soursop.data' is included as a package by using 2022-10-30T21:08:51,587 the `packages` configuration field or the proper discovery methods 2022-10-30T21:08:51,588 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-30T21:08:51,588 instead of `find_packages(...)`/`find:`). 2022-10-30T21:08:51,589 You can read more about "package discovery" and "data files" on setuptools 2022-10-30T21:08:51,589 documentation page. 2022-10-30T21:08:51,590 !! 2022-10-30T21:08:51,590 check.warn(importable) 2022-10-30T21:08:51,591 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'soursop.data.test_data' as data is deprecated, please list it in `packages`. 2022-10-30T21:08:51,591 !! 2022-10-30T21:08:51,592 ############################ 2022-10-30T21:08:51,592 # Package would be ignored # 2022-10-30T21:08:51,593 ############################ 2022-10-30T21:08:51,593 Python recognizes 'soursop.data.test_data' as an importable package, 2022-10-30T21:08:51,593 but it is not listed in the `packages` configuration of setuptools. 2022-10-30T21:08:51,594 'soursop.data.test_data' has been automatically added to the distribution only 2022-10-30T21:08:51,594 because it may contain data files, but this behavior is likely to change 2022-10-30T21:08:51,594 in future versions of setuptools (and therefore is considered deprecated). 2022-10-30T21:08:51,595 Please make sure that 'soursop.data.test_data' is included as a package by using 2022-10-30T21:08:51,595 the `packages` configuration field or the proper discovery methods 2022-10-30T21:08:51,596 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-30T21:08:51,596 instead of `find_packages(...)`/`find:`). 2022-10-30T21:08:51,596 You can read more about "package discovery" and "data files" on setuptools 2022-10-30T21:08:51,597 documentation page. 2022-10-30T21:08:51,597 !! 2022-10-30T21:08:51,598 check.warn(importable) 2022-10-30T21:08:51,598 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'soursop.data.test_data.cap_tests' as data is deprecated, please list it in `packages`. 2022-10-30T21:08:51,599 !! 2022-10-30T21:08:51,600 ############################ 2022-10-30T21:08:51,600 # Package would be ignored # 2022-10-30T21:08:51,600 ############################ 2022-10-30T21:08:51,600 Python recognizes 'soursop.data.test_data.cap_tests' as an importable package, 2022-10-30T21:08:51,601 but it is not listed in the `packages` configuration of setuptools. 2022-10-30T21:08:51,601 'soursop.data.test_data.cap_tests' has been automatically added to the distribution only 2022-10-30T21:08:51,602 because it may contain data files, but this behavior is likely to change 2022-10-30T21:08:51,602 in future versions of setuptools (and therefore is considered deprecated). 2022-10-30T21:08:51,603 Please make sure that 'soursop.data.test_data.cap_tests' is included as a package by using 2022-10-30T21:08:51,603 the `packages` configuration field or the proper discovery methods 2022-10-30T21:08:51,603 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-30T21:08:51,604 instead of `find_packages(...)`/`find:`). 2022-10-30T21:08:51,604 You can read more about "package discovery" and "data files" on setuptools 2022-10-30T21:08:51,605 documentation page. 2022-10-30T21:08:51,606 !! 2022-10-30T21:08:51,606 check.warn(importable) 2022-10-30T21:08:51,607 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'soursop.data.test_data.gromacs1chain' as data is deprecated, please list it in `packages`. 2022-10-30T21:08:51,607 !! 2022-10-30T21:08:51,608 ############################ 2022-10-30T21:08:51,608 # Package would be ignored # 2022-10-30T21:08:51,608 ############################ 2022-10-30T21:08:51,609 Python recognizes 'soursop.data.test_data.gromacs1chain' as an importable package, 2022-10-30T21:08:51,609 but it is not listed in the `packages` configuration of setuptools. 2022-10-30T21:08:51,610 'soursop.data.test_data.gromacs1chain' has been automatically added to the distribution only 2022-10-30T21:08:51,610 because it may contain data files, but this behavior is likely to change 2022-10-30T21:08:51,610 in future versions of setuptools (and therefore is considered deprecated). 2022-10-30T21:08:51,611 Please make sure that 'soursop.data.test_data.gromacs1chain' is included as a package by using 2022-10-30T21:08:51,611 the `packages` configuration field or the proper discovery methods 2022-10-30T21:08:51,612 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-30T21:08:51,612 instead of `find_packages(...)`/`find:`). 2022-10-30T21:08:51,612 You can read more about "package discovery" and "data files" on setuptools 2022-10-30T21:08:51,613 documentation page. 2022-10-30T21:08:51,614 !! 2022-10-30T21:08:51,614 check.warn(importable) 2022-10-30T21:08:51,615 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'soursop.data.test_data.gromacs2chains' as data is deprecated, please list it in `packages`. 2022-10-30T21:08:51,615 !! 2022-10-30T21:08:51,616 ############################ 2022-10-30T21:08:51,616 # Package would be ignored # 2022-10-30T21:08:51,617 ############################ 2022-10-30T21:08:51,617 Python recognizes 'soursop.data.test_data.gromacs2chains' as an importable package, 2022-10-30T21:08:51,617 but it is not listed in the `packages` configuration of setuptools. 2022-10-30T21:08:51,618 'soursop.data.test_data.gromacs2chains' has been automatically added to the distribution only 2022-10-30T21:08:51,618 because it may contain data files, but this behavior is likely to change 2022-10-30T21:08:51,619 in future versions of setuptools (and therefore is considered deprecated). 2022-10-30T21:08:51,619 Please make sure that 'soursop.data.test_data.gromacs2chains' is included as a package by using 2022-10-30T21:08:51,620 the `packages` configuration field or the proper discovery methods 2022-10-30T21:08:51,620 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-30T21:08:51,620 instead of `find_packages(...)`/`find:`). 2022-10-30T21:08:51,621 You can read more about "package discovery" and "data files" on setuptools 2022-10-30T21:08:51,621 documentation page. 2022-10-30T21:08:51,622 !! 2022-10-30T21:08:51,623 check.warn(importable) 2022-10-30T21:08:51,623 creating build/lib/soursop/.ipynb_checkpoints 2022-10-30T21:08:51,623 copying soursop/.ipynb_checkpoints/Untitled-checkpoint.ipynb -> build/lib/soursop/.ipynb_checkpoints 2022-10-30T21:08:51,624 creating build/lib/soursop/data 2022-10-30T21:08:51,624 copying soursop/data/SASA_SUMMARY.csv -> build/lib/soursop/data 2022-10-30T21:08:51,624 copying soursop/data/bbseg2.dat -> build/lib/soursop/data 2022-10-30T21:08:51,625 creating build/lib/soursop/data/test_data 2022-10-30T21:08:51,625 copying soursop/data/test_data/all_residues.pdb -> build/lib/soursop/data/test_data 2022-10-30T21:08:51,625 copying soursop/data/test_data/all_residues.xtc -> build/lib/soursop/data/test_data 2022-10-30T21:08:51,628 copying soursop/data/test_data/gs6.dcd -> build/lib/soursop/data/test_data 2022-10-30T21:08:51,633 copying soursop/data/test_data/gs6.pdb -> build/lib/soursop/data/test_data 2022-10-30T21:08:51,637 copying soursop/data/test_data/gs6.xtc -> build/lib/soursop/data/test_data 2022-10-30T21:08:51,641 copying soursop/data/test_data/gs6_invalid_r1.pdb -> build/lib/soursop/data/test_data 2022-10-30T21:08:51,645 copying soursop/data/test_data/ntl9.dcd -> build/lib/soursop/data/test_data 2022-10-30T21:08:51,655 copying soursop/data/test_data/ntl9.pdb -> build/lib/soursop/data/test_data 2022-10-30T21:08:51,663 copying soursop/data/test_data/ntl9.xtc -> build/lib/soursop/data/test_data 2022-10-30T21:08:51,669 creating build/lib/soursop/data/test_data/.ipynb_checkpoints 2022-10-30T21:08:51,670 copying soursop/data/test_data/.ipynb_checkpoints/Untitled-checkpoint.ipynb -> build/lib/soursop/data/test_data/.ipynb_checkpoints 2022-10-30T21:08:51,674 creating build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,675 copying soursop/data/test_data/cap_tests/ACD_start_1.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,679 copying soursop/data/test_data/cap_tests/ACD_start_10.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,683 copying soursop/data/test_data/cap_tests/ACE_NH2.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,687 copying soursop/data/test_data/cap_tests/ACE_NME.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,691 copying soursop/data/test_data/cap_tests/ACE_NME_multichain.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,696 copying soursop/data/test_data/cap_tests/ACE_NME_start_at_5.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,700 copying soursop/data/test_data/cap_tests/ACE_UCAP.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,704 copying soursop/data/test_data/cap_tests/FOR_NH2.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,709 copying soursop/data/test_data/cap_tests/FOR_NME.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,713 copying soursop/data/test_data/cap_tests/FOR_UCAP.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,718 copying soursop/data/test_data/cap_tests/UCAP_NH2.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,722 copying soursop/data/test_data/cap_tests/UCAP_NME.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,727 copying soursop/data/test_data/cap_tests/UCAP_UCAP.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,731 copying soursop/data/test_data/cap_tests/__START.pdb -> build/lib/soursop/data/test_data/cap_tests 2022-10-30T21:08:51,735 creating build/lib/soursop/data/test_data/gromacs1chain 2022-10-30T21:08:51,736 copying soursop/data/test_data/gromacs1chain/top.pdb -> build/lib/soursop/data/test_data/gromacs1chain 2022-10-30T21:08:51,744 copying soursop/data/test_data/gromacs1chain/traj.xtc -> build/lib/soursop/data/test_data/gromacs1chain 2022-10-30T21:08:51,752 creating build/lib/soursop/data/test_data/gromacs2chains 2022-10-30T21:08:51,753 copying soursop/data/test_data/gromacs2chains/top.pdb -> build/lib/soursop/data/test_data/gromacs2chains 2022-10-30T21:08:51,762 copying soursop/data/test_data/gromacs2chains/traj.xtc -> build/lib/soursop/data/test_data/gromacs2chains 2022-10-30T21:08:51,775 UPDATING build/lib/soursop/_version.py 2022-10-30T21:08:51,778 set build/lib/soursop/_version.py to 'v0.2.2' 2022-10-30T21:08:51,834 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-10-30T21:08:51,835 setuptools.SetuptoolsDeprecationWarning, 2022-10-30T21:08:51,887 installing to build/bdist.linux-armv7l/wheel 2022-10-30T21:08:51,887 running install 2022-10-30T21:08:51,950 running install_lib 2022-10-30T21:08:52,004 creating build/bdist.linux-armv7l 2022-10-30T21:08:52,005 creating build/bdist.linux-armv7l/wheel 2022-10-30T21:08:52,009 creating build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,010 copying build/lib/soursop/_version.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,014 copying build/lib/soursop/__init__.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,017 copying build/lib/soursop/ssprotein.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,031 copying build/lib/soursop/ssdata.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,034 copying build/lib/soursop/ssmutualinformation.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,038 copying build/lib/soursop/ssnmr.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,044 copying build/lib/soursop/configs.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,048 copying build/lib/soursop/ssutils.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,052 copying build/lib/soursop/sspolymer.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,055 copying build/lib/soursop/_internal_data.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,060 copying build/lib/soursop/ssio.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,063 copying build/lib/soursop/soursop.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,066 copying build/lib/soursop/ssexceptions.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,070 copying build/lib/soursop/sstools.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,075 creating build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,076 copying build/lib/soursop/tests/__init__.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,080 copying build/lib/soursop/tests/test_sstrajectory.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,085 copying build/lib/soursop/tests/test_soursop.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,088 copying build/lib/soursop/tests/test_numbering.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,092 copying build/lib/soursop/tests/conftest.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,096 copying build/lib/soursop/tests/test_ssnmr_extended.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,099 copying build/lib/soursop/tests/test_ssnmr.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,103 copying build/lib/soursop/tests/test_caps.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,107 copying build/lib/soursop/tests/test_ssmutual_information.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,110 copying build/lib/soursop/tests/test_ssutils.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,114 copying build/lib/soursop/tests/test_ssproteins.py -> build/bdist.linux-armv7l/wheel/soursop/tests 2022-10-30T21:08:52,119 copying build/lib/soursop/sstrajectory.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,125 copying build/lib/soursop/sspre.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,131 creating build/bdist.linux-armv7l/wheel/soursop/.ipynb_checkpoints 2022-10-30T21:08:52,132 copying build/lib/soursop/.ipynb_checkpoints/Untitled-checkpoint.ipynb -> build/bdist.linux-armv7l/wheel/soursop/.ipynb_checkpoints 2022-10-30T21:08:52,136 copying build/lib/soursop/sssampling.py -> build/bdist.linux-armv7l/wheel/soursop 2022-10-30T21:08:52,140 creating build/bdist.linux-armv7l/wheel/soursop/data 2022-10-30T21:08:52,143 creating build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,145 copying build/lib/soursop/data/test_data/all_residues.xtc -> build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,150 copying build/lib/soursop/data/test_data/ntl9.xtc -> build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,155 copying build/lib/soursop/data/test_data/gs6_invalid_r1.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,159 copying build/lib/soursop/data/test_data/ntl9.dcd -> build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,169 creating build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,171 copying build/lib/soursop/data/test_data/cap_tests/ACE_UCAP.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,175 copying build/lib/soursop/data/test_data/cap_tests/UCAP_NH2.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,179 copying build/lib/soursop/data/test_data/cap_tests/ACD_start_10.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,183 copying build/lib/soursop/data/test_data/cap_tests/ACE_NME.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,188 copying build/lib/soursop/data/test_data/cap_tests/UCAP_UCAP.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,192 copying build/lib/soursop/data/test_data/cap_tests/__START.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,196 copying build/lib/soursop/data/test_data/cap_tests/ACE_NME_multichain.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,201 copying build/lib/soursop/data/test_data/cap_tests/FOR_NH2.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,206 copying build/lib/soursop/data/test_data/cap_tests/FOR_NME.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,210 copying build/lib/soursop/data/test_data/cap_tests/ACE_NH2.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,214 copying build/lib/soursop/data/test_data/cap_tests/FOR_UCAP.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,218 copying build/lib/soursop/data/test_data/cap_tests/ACE_NME_start_at_5.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,222 copying build/lib/soursop/data/test_data/cap_tests/ACD_start_1.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,225 copying build/lib/soursop/data/test_data/cap_tests/UCAP_NME.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/cap_tests 2022-10-30T21:08:52,230 creating build/bdist.linux-armv7l/wheel/soursop/data/test_data/gromacs2chains 2022-10-30T21:08:52,232 copying build/lib/soursop/data/test_data/gromacs2chains/top.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/gromacs2chains 2022-10-30T21:08:52,240 copying build/lib/soursop/data/test_data/gromacs2chains/traj.xtc -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/gromacs2chains 2022-10-30T21:08:52,250 creating build/bdist.linux-armv7l/wheel/soursop/data/test_data/gromacs1chain 2022-10-30T21:08:52,251 copying build/lib/soursop/data/test_data/gromacs1chain/top.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/gromacs1chain 2022-10-30T21:08:52,260 copying build/lib/soursop/data/test_data/gromacs1chain/traj.xtc -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/gromacs1chain 2022-10-30T21:08:52,268 copying build/lib/soursop/data/test_data/ntl9.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,275 copying build/lib/soursop/data/test_data/gs6.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,279 copying build/lib/soursop/data/test_data/gs6.xtc -> build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,282 copying build/lib/soursop/data/test_data/all_residues.pdb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,288 copying build/lib/soursop/data/test_data/gs6.dcd -> build/bdist.linux-armv7l/wheel/soursop/data/test_data 2022-10-30T21:08:52,292 creating build/bdist.linux-armv7l/wheel/soursop/data/test_data/.ipynb_checkpoints 2022-10-30T21:08:52,294 copying build/lib/soursop/data/test_data/.ipynb_checkpoints/Untitled-checkpoint.ipynb -> build/bdist.linux-armv7l/wheel/soursop/data/test_data/.ipynb_checkpoints 2022-10-30T21:08:52,298 copying build/lib/soursop/data/SASA_SUMMARY.csv -> build/bdist.linux-armv7l/wheel/soursop/data 2022-10-30T21:08:52,301 copying build/lib/soursop/data/bbseg2.dat -> build/bdist.linux-armv7l/wheel/soursop/data 2022-10-30T21:08:52,304 running install_egg_info 2022-10-30T21:08:52,368 Copying soursop.egg-info to build/bdist.linux-armv7l/wheel/soursop-0.2.2-py3.7.egg-info 2022-10-30T21:08:52,387 running install_scripts 2022-10-30T21:08:52,589 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-30T21:08:52,598 creating build/bdist.linux-armv7l/wheel/soursop-0.2.2.dist-info/WHEEL 2022-10-30T21:08:52,602 creating '/tmp/pip-wheel-3kjtnzdo/soursop-0.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-30T21:08:52,608 adding 'soursop/__init__.py' 2022-10-30T21:08:52,611 adding 'soursop/_internal_data.py' 2022-10-30T21:08:52,613 adding 'soursop/_version.py' 2022-10-30T21:08:52,615 adding 'soursop/configs.py' 2022-10-30T21:08:52,618 adding 'soursop/soursop.py' 2022-10-30T21:08:52,620 adding 'soursop/ssdata.py' 2022-10-30T21:08:52,623 adding 'soursop/ssexceptions.py' 2022-10-30T21:08:52,625 adding 'soursop/ssio.py' 2022-10-30T21:08:52,628 adding 'soursop/ssmutualinformation.py' 2022-10-30T21:08:52,637 adding 'soursop/ssnmr.py' 2022-10-30T21:08:52,641 adding 'soursop/sspolymer.py' 2022-10-30T21:08:52,645 adding 'soursop/sspre.py' 2022-10-30T21:08:52,707 adding 'soursop/ssprotein.py' 2022-10-30T21:08:52,714 adding 'soursop/sssampling.py' 2022-10-30T21:08:52,716 adding 'soursop/sstools.py' 2022-10-30T21:08:52,728 adding 'soursop/sstrajectory.py' 2022-10-30T21:08:52,732 adding 'soursop/ssutils.py' 2022-10-30T21:08:52,735 adding 'soursop/.ipynb_checkpoints/Untitled-checkpoint.ipynb' 2022-10-30T21:08:52,739 adding 'soursop/data/SASA_SUMMARY.csv' 2022-10-30T21:08:52,741 adding 'soursop/data/bbseg2.dat' 2022-10-30T21:08:52,750 adding 'soursop/data/test_data/all_residues.pdb' 2022-10-30T21:08:52,755 adding 'soursop/data/test_data/all_residues.xtc' 2022-10-30T21:08:52,759 adding 'soursop/data/test_data/gs6.dcd' 2022-10-30T21:08:52,762 adding 'soursop/data/test_data/gs6.pdb' 2022-10-30T21:08:52,765 adding 'soursop/data/test_data/gs6.xtc' 2022-10-30T21:08:52,768 adding 'soursop/data/test_data/gs6_invalid_r1.pdb' 2022-10-30T21:08:52,828 adding 'soursop/data/test_data/ntl9.dcd' 2022-10-30T21:08:52,857 adding 'soursop/data/test_data/ntl9.pdb' 2022-10-30T21:08:52,869 adding 'soursop/data/test_data/ntl9.xtc' 2022-10-30T21:08:52,873 adding 'soursop/data/test_data/.ipynb_checkpoints/Untitled-checkpoint.ipynb' 2022-10-30T21:08:52,877 adding 'soursop/data/test_data/cap_tests/ACD_start_1.pdb' 2022-10-30T21:08:52,880 adding 'soursop/data/test_data/cap_tests/ACD_start_10.pdb' 2022-10-30T21:08:52,883 adding 'soursop/data/test_data/cap_tests/ACE_NH2.pdb' 2022-10-30T21:08:52,886 adding 'soursop/data/test_data/cap_tests/ACE_NME.pdb' 2022-10-30T21:08:52,892 adding 'soursop/data/test_data/cap_tests/ACE_NME_multichain.pdb' 2022-10-30T21:08:52,895 adding 'soursop/data/test_data/cap_tests/ACE_NME_start_at_5.pdb' 2022-10-30T21:08:52,898 adding 'soursop/data/test_data/cap_tests/ACE_UCAP.pdb' 2022-10-30T21:08:52,901 adding 'soursop/data/test_data/cap_tests/FOR_NH2.pdb' 2022-10-30T21:08:52,904 adding 'soursop/data/test_data/cap_tests/FOR_NME.pdb' 2022-10-30T21:08:52,908 adding 'soursop/data/test_data/cap_tests/FOR_UCAP.pdb' 2022-10-30T21:08:52,911 adding 'soursop/data/test_data/cap_tests/UCAP_NH2.pdb' 2022-10-30T21:08:52,914 adding 'soursop/data/test_data/cap_tests/UCAP_NME.pdb' 2022-10-30T21:08:52,917 adding 'soursop/data/test_data/cap_tests/UCAP_UCAP.pdb' 2022-10-30T21:08:52,919 adding 'soursop/data/test_data/cap_tests/__START.pdb' 2022-10-30T21:08:52,948 adding 'soursop/data/test_data/gromacs1chain/top.pdb' 2022-10-30T21:08:52,970 adding 'soursop/data/test_data/gromacs1chain/traj.xtc' 2022-10-30T21:08:53,002 adding 'soursop/data/test_data/gromacs2chains/top.pdb' 2022-10-30T21:08:53,026 adding 'soursop/data/test_data/gromacs2chains/traj.xtc' 2022-10-30T21:08:53,032 adding 'soursop/tests/__init__.py' 2022-10-30T21:08:53,034 adding 'soursop/tests/conftest.py' 2022-10-30T21:08:53,037 adding 'soursop/tests/test_caps.py' 2022-10-30T21:08:53,039 adding 'soursop/tests/test_numbering.py' 2022-10-30T21:08:53,041 adding 'soursop/tests/test_soursop.py' 2022-10-30T21:08:53,043 adding 'soursop/tests/test_ssmutual_information.py' 2022-10-30T21:08:53,047 adding 'soursop/tests/test_ssnmr.py' 2022-10-30T21:08:53,049 adding 'soursop/tests/test_ssnmr_extended.py' 2022-10-30T21:08:53,057 adding 'soursop/tests/test_ssproteins.py' 2022-10-30T21:08:53,063 adding 'soursop/tests/test_sstrajectory.py' 2022-10-30T21:08:53,066 adding 'soursop/tests/test_ssutils.py' 2022-10-30T21:08:53,071 adding 'soursop-0.2.2.dist-info/LICENSE' 2022-10-30T21:08:53,074 adding 'soursop-0.2.2.dist-info/METADATA' 2022-10-30T21:08:53,076 adding 'soursop-0.2.2.dist-info/WHEEL' 2022-10-30T21:08:53,077 adding 'soursop-0.2.2.dist-info/top_level.txt' 2022-10-30T21:08:53,079 adding 'soursop-0.2.2.dist-info/RECORD' 2022-10-30T21:08:53,100 removing build/bdist.linux-armv7l/wheel 2022-10-30T21:08:53,380 Building wheel for soursop (setup.py): finished with status 'done' 2022-10-30T21:08:53,401 Created wheel for soursop: filename=soursop-0.2.2-py3-none-any.whl size=461352 sha256=193a5f2f73e4da4acd2750f0cc1f7f5240697dd215ab44e16376e36af6d9f19a 2022-10-30T21:08:53,404 Stored in directory: /tmp/pip-ephem-wheel-cache-f6cpijo0/wheels/a1/90/0c/4a58b352aeb84c05fdee672a0681eb9cfa5043e5e26d2131d4 2022-10-30T21:08:53,435 Successfully built soursop 2022-10-30T21:08:53,479 Removed build tracker: '/tmp/pip-build-tracker-b2m6ofep'