2022-10-31T13:59:12,692 Created temporary directory: /tmp/pip-ephem-wheel-cache-983iy6j3 2022-10-31T13:59:12,697 Created temporary directory: /tmp/pip-build-tracker-6admeuuo 2022-10-31T13:59:12,698 Initialized build tracking at /tmp/pip-build-tracker-6admeuuo 2022-10-31T13:59:12,698 Created build tracker: /tmp/pip-build-tracker-6admeuuo 2022-10-31T13:59:12,698 Entered build tracker: /tmp/pip-build-tracker-6admeuuo 2022-10-31T13:59:12,700 Created temporary directory: /tmp/pip-wheel-9v7b12lz 2022-10-31T13:59:12,708 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-31T13:59:12,713 Created temporary directory: /tmp/pip-ephem-wheel-cache-8lm8u82v 2022-10-31T13:59:12,770 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-31T13:59:12,777 2 location(s) to search for versions of hca-ingest: 2022-10-31T13:59:12,777 * https://pypi.org/simple/hca-ingest/ 2022-10-31T13:59:12,777 * https://www.piwheels.org/simple/hca-ingest/ 2022-10-31T13:59:12,779 Fetching project page and analyzing links: https://pypi.org/simple/hca-ingest/ 2022-10-31T13:59:12,780 Getting page https://pypi.org/simple/hca-ingest/ 2022-10-31T13:59:12,783 Found index url https://pypi.org/simple 2022-10-31T13:59:13,026 Fetched page https://pypi.org/simple/hca-ingest/ as application/vnd.pypi.simple.v1+json 2022-10-31T13:59:13,042 Found link https://files.pythonhosted.org/packages/40/63/cd35e918909d6794645b3ed42242746abf8234ee9098032801b4a8696647/hca_ingest-0.1a0.tar.gz (from 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https://files.pythonhosted.org/packages/ea/f8/e853309bcea77de81c907a57a1d182fd63fe8988d36323e73f0beb74335d/hca-ingest-2.2.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.2.0 2022-10-31T13:59:13,061 Found link https://files.pythonhosted.org/packages/06/34/714bd7236a162de34b1e6425619dd1c0f5ebaaf3b47ea346154131f91f64/hca-ingest-2.3.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.3.0 2022-10-31T13:59:13,062 Found link https://files.pythonhosted.org/packages/10/94/bc2ac0c789c040d0dd27e3cdcac6be5c652cdb9d131663d859b0377240cd/hca-ingest-2.4.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.4.0 2022-10-31T13:59:13,063 Found link https://files.pythonhosted.org/packages/0b/0e/3d67ff3248cee1dc38c09d7b796de62a2087db5a7d8151a42ac2a16bcc4c/hca-ingest-2.4.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.4.1 2022-10-31T13:59:13,063 Found link https://files.pythonhosted.org/packages/cf/69/f435d36acdbd6a6a09bdb75e3c95a03529b2e63295e948ba2e8540f4e4b8/hca-ingest-2.5.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.5.0 2022-10-31T13:59:13,064 Found link https://files.pythonhosted.org/packages/50/25/30209a19a93fad1ea989e32b08fb16511370f592df05cb9a081b18713a93/hca-ingest-2.5.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.5.1 2022-10-31T13:59:13,065 Found link https://files.pythonhosted.org/packages/c0/6f/16c46bfc33e685c69be769239a1189c3e0604e6652a726be2616dcf16202/hca-ingest-2.5.2.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.5.2 2022-10-31T13:59:13,066 Fetching project page and analyzing links: https://www.piwheels.org/simple/hca-ingest/ 2022-10-31T13:59:13,066 Getting page https://www.piwheels.org/simple/hca-ingest/ 2022-10-31T13:59:13,069 Found index url https://www.piwheels.org/simple 2022-10-31T13:59:13,312 Fetched page https://www.piwheels.org/simple/hca-ingest/ as text/html 2022-10-31T13:59:13,339 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-2.5.1-py3-none-any.whl#sha256=f3081cec36a961b67dfe5c304c6b19f04586560be32c0aee08fc7c457885c86e (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,340 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-2.5.0-py3-none-any.whl#sha256=4ceb533b3482aba721ac65c1eb424976cfc6acad34a7c5192a270df453b036ca (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,340 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-2.4.1-py3-none-any.whl#sha256=5bef18aed41fb3ae7dac202b57d7e011b8438aa9f2d31f003269dc72726771fb (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,341 Skipping link: No binaries permitted for hca-ingest: 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https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,343 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-1.0.2-py3-none-any.whl#sha256=65aaae135597dd3c8c023c85ae0062a758e61a9641324de4be190d701c38efc6 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,344 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-1.0.1-py3-none-any.whl#sha256=0e61d67cc3c2d857cf8325076f58b5c103f71118a88e63b4c23f3be6f1770d21 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,344 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-1.0.0-py3-none-any.whl#sha256=5f26446b7f3116fc677b018e62ccf0cfed008315027e22c41ed8292323260163 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,345 Skipping link: No binaries permitted for hca-ingest: 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https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,347 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.8-py3-none-any.whl#sha256=030926279defb3316389c6f921451209220a8dc802d9234a2f4036301613b02d (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,347 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.7-py3-none-any.whl#sha256=c4f742237f57a0f6fe296e2b1841df77bb4ac7e14d6225b7055c731f4a2fbc27 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,348 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.6-py3-none-any.whl#sha256=2c74793ece815dabef5170732b75256999333ed2cc359378f2f7713b4412622f (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,349 Skipping link: No binaries permitted for hca-ingest: 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https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,351 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.1-py3-none-any.whl#sha256=e7fe7a4ace5e875c4255093eb731e80f0016f5dfaba0c7f33004287c1d69217a (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,351 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6-py3-none-any.whl#sha256=e81911e7b849f5653a6928790fd1c67620605f431583b58a048715a159847fc8 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,352 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.5.1-py3-none-any.whl#sha256=8d4457964d19276cb0bc0da4c45fa732dc6a5f2d3a3e177f3c4224efea4eec31 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,352 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.5-py3-none-any.whl#sha256=14a52ab3b55189ee2c1b7614e63431d4064329889aff5f3c4180f3630d1793c3 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,353 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.4-py3-none-any.whl#sha256=787d60683e649c0640bf74a4bd815b9c65b29bf2633bae4eda88dd911d21302a (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,353 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.3b0-py3-none-any.whl#sha256=8d4197cff39216ee46c8b1a81a0c5bd2abdca3bec0a246a899cdf98bcb4e1c2f (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,354 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.3a0-py3-none-any.whl#sha256=4fb9a524da075589f7558ffde7785146d3c40d4d3d60d562041dc5dca4d16875 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,354 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.1b0-py3-none-any.whl#sha256=86caf7d6ae3fd26aee7f1a1ae29bf2fae4b66916e7e0fd9eda35aa21805926b3 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,355 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.1a0-py3-none-any.whl#sha256=7ba155e45589b5e7e4b67cc98a2ed75aa67938cd2c2b31d8f0eb7ecea769c7c4 (from https://www.piwheels.org/simple/hca-ingest/) 2022-10-31T13:59:13,356 Skipping link: not a file: https://www.piwheels.org/simple/hca-ingest/ 2022-10-31T13:59:13,356 Skipping link: not a file: https://pypi.org/simple/hca-ingest/ 2022-10-31T13:59:13,399 Given no hashes to check 1 links for project 'hca-ingest': discarding no candidates 2022-10-31T13:59:13,430 Collecting hca-ingest==2.5.2 2022-10-31T13:59:13,434 Created temporary directory: /tmp/pip-unpack-kglgeu0t 2022-10-31T13:59:13,673 Downloading hca-ingest-2.5.2.tar.gz (57 kB) 2022-10-31T13:59:14,005 Added hca-ingest==2.5.2 from https://files.pythonhosted.org/packages/c0/6f/16c46bfc33e685c69be769239a1189c3e0604e6652a726be2616dcf16202/hca-ingest-2.5.2.tar.gz to build tracker '/tmp/pip-build-tracker-6admeuuo' 2022-10-31T13:59:14,009 Running setup.py (path:/tmp/pip-wheel-9v7b12lz/hca-ingest_da5b06710f764559a7e2965ea7410a98/setup.py) egg_info for package hca-ingest 2022-10-31T13:59:14,010 Created temporary directory: /tmp/pip-pip-egg-info-nleit01p 2022-10-31T13:59:14,011 Preparing metadata (setup.py): started 2022-10-31T13:59:14,013 Running command python setup.py egg_info 2022-10-31T13:59:16,410 running egg_info 2022-10-31T13:59:16,415 creating /tmp/pip-pip-egg-info-nleit01p/hca_ingest.egg-info 2022-10-31T13:59:16,463 writing /tmp/pip-pip-egg-info-nleit01p/hca_ingest.egg-info/PKG-INFO 2022-10-31T13:59:16,468 writing dependency_links to /tmp/pip-pip-egg-info-nleit01p/hca_ingest.egg-info/dependency_links.txt 2022-10-31T13:59:16,472 writing requirements to /tmp/pip-pip-egg-info-nleit01p/hca_ingest.egg-info/requires.txt 2022-10-31T13:59:16,474 writing top-level names to /tmp/pip-pip-egg-info-nleit01p/hca_ingest.egg-info/top_level.txt 2022-10-31T13:59:16,477 writing manifest file '/tmp/pip-pip-egg-info-nleit01p/hca_ingest.egg-info/SOURCES.txt' 2022-10-31T13:59:16,645 reading manifest file '/tmp/pip-pip-egg-info-nleit01p/hca_ingest.egg-info/SOURCES.txt' 2022-10-31T13:59:16,648 reading manifest template 'MANIFEST.in' 2022-10-31T13:59:16,649 adding license file 'LICENSE' 2022-10-31T13:59:16,658 writing manifest file '/tmp/pip-pip-egg-info-nleit01p/hca_ingest.egg-info/SOURCES.txt' 2022-10-31T13:59:16,863 Preparing metadata (setup.py): finished with status 'done' 2022-10-31T13:59:16,877 Source in /tmp/pip-wheel-9v7b12lz/hca-ingest_da5b06710f764559a7e2965ea7410a98 has version 2.5.2, which satisfies requirement hca-ingest==2.5.2 from https://files.pythonhosted.org/packages/c0/6f/16c46bfc33e685c69be769239a1189c3e0604e6652a726be2616dcf16202/hca-ingest-2.5.2.tar.gz 2022-10-31T13:59:16,879 Removed hca-ingest==2.5.2 from https://files.pythonhosted.org/packages/c0/6f/16c46bfc33e685c69be769239a1189c3e0604e6652a726be2616dcf16202/hca-ingest-2.5.2.tar.gz from build tracker '/tmp/pip-build-tracker-6admeuuo' 2022-10-31T13:59:16,890 Created temporary directory: /tmp/pip-unpack-456l21z3 2022-10-31T13:59:16,891 Building wheels for collected packages: hca-ingest 2022-10-31T13:59:16,901 Created temporary directory: /tmp/pip-wheel-wvq353jj 2022-10-31T13:59:16,902 Building wheel for hca-ingest (setup.py): started 2022-10-31T13:59:16,904 Destination directory: /tmp/pip-wheel-wvq353jj 2022-10-31T13:59:16,904 Running command python setup.py bdist_wheel 2022-10-31T13:59:19,246 running bdist_wheel 2022-10-31T13:59:19,394 running build 2022-10-31T13:59:19,395 running build_py 2022-10-31T13:59:19,450 creating build 2022-10-31T13:59:19,451 creating build/lib 2022-10-31T13:59:19,452 creating build/lib/hca_ingest 2022-10-31T13:59:19,454 copying hca_ingest/__init__.py -> build/lib/hca_ingest 2022-10-31T13:59:19,459 creating build/lib/hca_ingest/template 2022-10-31T13:59:19,461 copying hca_ingest/template/linked_spreadsheet_builder.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,466 copying hca_ingest/template/schema_template.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,471 copying hca_ingest/template/schema_parser.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,476 copying hca_ingest/template/exceptions.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,479 copying hca_ingest/template/spreadsheet_builder.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,484 copying hca_ingest/template/descriptor.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,488 copying hca_ingest/template/vanilla_spreadsheet_builder.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,491 copying hca_ingest/template/__init__.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,494 copying hca_ingest/template/tab_config.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,497 copying hca_ingest/template/migration_parser.py -> build/lib/hca_ingest/template 2022-10-31T13:59:19,502 creating build/lib/hca_ingest/importer 2022-10-31T13:59:19,504 copying hca_ingest/importer/importer.py -> build/lib/hca_ingest/importer 2022-10-31T13:59:19,509 copying hca_ingest/importer/data_node.py -> build/lib/hca_ingest/importer 2022-10-31T13:59:19,512 copying hca_ingest/importer/__init__.py -> build/lib/hca_ingest/importer 2022-10-31T13:59:19,516 creating build/lib/hca_ingest/downloader 2022-10-31T13:59:19,518 copying hca_ingest/downloader/flattener.py -> build/lib/hca_ingest/downloader 2022-10-31T13:59:19,523 copying hca_ingest/downloader/downloader.py -> build/lib/hca_ingest/downloader 2022-10-31T13:59:19,526 copying hca_ingest/downloader/data_collector.py -> build/lib/hca_ingest/downloader 2022-10-31T13:59:19,529 copying hca_ingest/downloader/workbook.py -> build/lib/hca_ingest/downloader 2022-10-31T13:59:19,533 copying hca_ingest/downloader/entity.py -> build/lib/hca_ingest/downloader 2022-10-31T13:59:19,536 copying hca_ingest/downloader/__init__.py -> build/lib/hca_ingest/downloader 2022-10-31T13:59:19,541 creating build/lib/hca_ingest/utils 2022-10-31T13:59:19,542 copying hca_ingest/utils/spreadsheet.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,546 copying hca_ingest/utils/bundlevalidator.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,549 copying hca_ingest/utils/errorreport.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,553 copying hca_ingest/utils/token_manager.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,556 copying hca_ingest/utils/IngestError.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,560 copying hca_ingest/utils/doctict.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,563 copying hca_ingest/utils/date.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,567 copying hca_ingest/utils/generate_redaction_manifest.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,572 copying hca_ingest/utils/validationreport.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,575 copying hca_ingest/utils/__init__.py -> build/lib/hca_ingest/utils 2022-10-31T13:59:19,579 creating build/lib/hca_ingest/api 2022-10-31T13:59:19,581 copying hca_ingest/api/requests_utils.py -> build/lib/hca_ingest/api 2022-10-31T13:59:19,585 copying hca_ingest/api/ingestapi.py -> build/lib/hca_ingest/api 2022-10-31T13:59:19,589 copying hca_ingest/api/stagingapi.py -> build/lib/hca_ingest/api 2022-10-31T13:59:19,593 copying hca_ingest/api/__init__.py -> build/lib/hca_ingest/api 2022-10-31T13:59:19,598 creating build/lib/hca_ingest/importer/conversion 2022-10-31T13:59:19,599 copying hca_ingest/importer/conversion/data_converter.py -> build/lib/hca_ingest/importer/conversion 2022-10-31T13:59:19,603 copying hca_ingest/importer/conversion/metadata_entity.py -> build/lib/hca_ingest/importer/conversion 2022-10-31T13:59:19,607 copying hca_ingest/importer/conversion/template_manager.py -> build/lib/hca_ingest/importer/conversion 2022-10-31T13:59:19,611 copying hca_ingest/importer/conversion/exceptions.py -> build/lib/hca_ingest/importer/conversion 2022-10-31T13:59:19,614 copying hca_ingest/importer/conversion/column_specification.py -> build/lib/hca_ingest/importer/conversion 2022-10-31T13:59:19,618 copying hca_ingest/importer/conversion/utils.py -> build/lib/hca_ingest/importer/conversion 2022-10-31T13:59:19,621 copying hca_ingest/importer/conversion/conversion_strategy.py -> build/lib/hca_ingest/importer/conversion 2022-10-31T13:59:19,625 copying hca_ingest/importer/conversion/__init__.py -> build/lib/hca_ingest/importer/conversion 2022-10-31T13:59:19,629 creating build/lib/hca_ingest/importer/spreadsheet 2022-10-31T13:59:19,630 copying hca_ingest/importer/spreadsheet/ingest_worksheet.py -> build/lib/hca_ingest/importer/spreadsheet 2022-10-31T13:59:19,634 copying hca_ingest/importer/spreadsheet/__init__.py -> build/lib/hca_ingest/importer/spreadsheet 2022-10-31T13:59:19,636 copying hca_ingest/importer/spreadsheet/ingest_workbook.py -> build/lib/hca_ingest/importer/spreadsheet 2022-10-31T13:59:19,642 creating build/lib/hca_ingest/importer/submission 2022-10-31T13:59:19,643 copying hca_ingest/importer/submission/entity_map.py -> build/lib/hca_ingest/importer/submission 2022-10-31T13:59:19,647 copying hca_ingest/importer/submission/submission.py -> build/lib/hca_ingest/importer/submission 2022-10-31T13:59:19,651 copying hca_ingest/importer/submission/errors.py -> build/lib/hca_ingest/importer/submission 2022-10-31T13:59:19,654 copying hca_ingest/importer/submission/entity.py -> build/lib/hca_ingest/importer/submission 2022-10-31T13:59:19,657 copying hca_ingest/importer/submission/entity_linker.py -> build/lib/hca_ingest/importer/submission 2022-10-31T13:59:19,661 copying hca_ingest/importer/submission/__init__.py -> build/lib/hca_ingest/importer/submission 2022-10-31T13:59:19,664 copying hca_ingest/importer/submission/ingest_submitter.py -> build/lib/hca_ingest/importer/submission 2022-10-31T13:59:19,667 running egg_info 2022-10-31T13:59:19,789 writing hca_ingest.egg-info/PKG-INFO 2022-10-31T13:59:19,793 writing dependency_links to hca_ingest.egg-info/dependency_links.txt 2022-10-31T13:59:19,797 writing requirements to hca_ingest.egg-info/requires.txt 2022-10-31T13:59:19,799 writing top-level names to hca_ingest.egg-info/top_level.txt 2022-10-31T13:59:19,867 reading manifest file 'hca_ingest.egg-info/SOURCES.txt' 2022-10-31T13:59:19,873 reading manifest template 'MANIFEST.in' 2022-10-31T13:59:19,875 adding license file 'LICENSE' 2022-10-31T13:59:19,886 writing manifest file 'hca_ingest.egg-info/SOURCES.txt' 2022-10-31T13:59:19,961 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-10-31T13:59:19,962 setuptools.SetuptoolsDeprecationWarning, 2022-10-31T13:59:20,013 installing to build/bdist.linux-armv7l/wheel 2022-10-31T13:59:20,014 running install 2022-10-31T13:59:20,076 running install_lib 2022-10-31T13:59:20,130 creating build/bdist.linux-armv7l 2022-10-31T13:59:20,130 creating build/bdist.linux-armv7l/wheel 2022-10-31T13:59:20,133 creating build/bdist.linux-armv7l/wheel/hca_ingest 2022-10-31T13:59:20,136 creating build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,138 copying build/lib/hca_ingest/template/linked_spreadsheet_builder.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,143 copying build/lib/hca_ingest/template/schema_template.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,148 copying build/lib/hca_ingest/template/schema_parser.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,152 copying build/lib/hca_ingest/template/exceptions.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,155 copying build/lib/hca_ingest/template/spreadsheet_builder.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,159 copying build/lib/hca_ingest/template/descriptor.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,168 copying build/lib/hca_ingest/template/vanilla_spreadsheet_builder.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,172 copying build/lib/hca_ingest/template/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,174 copying build/lib/hca_ingest/template/tab_config.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,177 copying build/lib/hca_ingest/template/migration_parser.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-10-31T13:59:20,182 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer 2022-10-31T13:59:20,183 copying build/lib/hca_ingest/importer/importer.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer 2022-10-31T13:59:20,188 copying build/lib/hca_ingest/importer/data_node.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer 2022-10-31T13:59:20,192 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-10-31T13:59:20,194 copying build/lib/hca_ingest/importer/conversion/data_converter.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-10-31T13:59:20,197 copying build/lib/hca_ingest/importer/conversion/metadata_entity.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-10-31T13:59:20,201 copying build/lib/hca_ingest/importer/conversion/template_manager.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-10-31T13:59:20,205 copying build/lib/hca_ingest/importer/conversion/exceptions.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-10-31T13:59:20,208 copying build/lib/hca_ingest/importer/conversion/column_specification.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-10-31T13:59:20,212 copying build/lib/hca_ingest/importer/conversion/utils.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-10-31T13:59:20,215 copying build/lib/hca_ingest/importer/conversion/conversion_strategy.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-10-31T13:59:20,219 copying build/lib/hca_ingest/importer/conversion/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-10-31T13:59:20,222 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer/spreadsheet 2022-10-31T13:59:20,224 copying build/lib/hca_ingest/importer/spreadsheet/ingest_worksheet.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/spreadsheet 2022-10-31T13:59:20,227 copying build/lib/hca_ingest/importer/spreadsheet/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/spreadsheet 2022-10-31T13:59:20,230 copying build/lib/hca_ingest/importer/spreadsheet/ingest_workbook.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/spreadsheet 2022-10-31T13:59:20,233 copying build/lib/hca_ingest/importer/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer 2022-10-31T13:59:20,237 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-10-31T13:59:20,238 copying build/lib/hca_ingest/importer/submission/entity_map.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-10-31T13:59:20,242 copying build/lib/hca_ingest/importer/submission/submission.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-10-31T13:59:20,245 copying build/lib/hca_ingest/importer/submission/errors.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-10-31T13:59:20,248 copying build/lib/hca_ingest/importer/submission/entity.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-10-31T13:59:20,251 copying build/lib/hca_ingest/importer/submission/entity_linker.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-10-31T13:59:20,255 copying build/lib/hca_ingest/importer/submission/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-10-31T13:59:20,257 copying build/lib/hca_ingest/importer/submission/ingest_submitter.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-10-31T13:59:20,262 creating build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-10-31T13:59:20,263 copying build/lib/hca_ingest/downloader/flattener.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-10-31T13:59:20,267 copying build/lib/hca_ingest/downloader/downloader.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-10-31T13:59:20,270 copying build/lib/hca_ingest/downloader/data_collector.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-10-31T13:59:20,273 copying build/lib/hca_ingest/downloader/workbook.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-10-31T13:59:20,276 copying build/lib/hca_ingest/downloader/entity.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-10-31T13:59:20,279 copying build/lib/hca_ingest/downloader/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-10-31T13:59:20,282 copying build/lib/hca_ingest/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest 2022-10-31T13:59:20,285 creating build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,287 copying build/lib/hca_ingest/utils/spreadsheet.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,290 copying build/lib/hca_ingest/utils/bundlevalidator.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,293 copying build/lib/hca_ingest/utils/errorreport.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,296 copying build/lib/hca_ingest/utils/token_manager.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,299 copying build/lib/hca_ingest/utils/IngestError.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,302 copying build/lib/hca_ingest/utils/doctict.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,305 copying build/lib/hca_ingest/utils/date.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,308 copying build/lib/hca_ingest/utils/generate_redaction_manifest.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,312 copying build/lib/hca_ingest/utils/validationreport.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,315 copying build/lib/hca_ingest/utils/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-10-31T13:59:20,319 creating build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-10-31T13:59:20,320 copying build/lib/hca_ingest/api/requests_utils.py -> build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-10-31T13:59:20,324 copying build/lib/hca_ingest/api/ingestapi.py -> build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-10-31T13:59:20,328 copying build/lib/hca_ingest/api/stagingapi.py -> build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-10-31T13:59:20,332 copying build/lib/hca_ingest/api/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-10-31T13:59:20,334 running install_egg_info 2022-10-31T13:59:20,395 Copying hca_ingest.egg-info to build/bdist.linux-armv7l/wheel/hca_ingest-2.5.2-py3.7.egg-info 2022-10-31T13:59:20,413 running install_scripts 2022-10-31T13:59:20,574 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-10-31T13:59:20,583 creating build/bdist.linux-armv7l/wheel/hca_ingest-2.5.2.dist-info/WHEEL 2022-10-31T13:59:20,587 creating '/tmp/pip-wheel-wvq353jj/hca_ingest-2.5.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-31T13:59:20,591 adding 'hca_ingest/__init__.py' 2022-10-31T13:59:20,595 adding 'hca_ingest/api/__init__.py' 2022-10-31T13:59:20,600 adding 'hca_ingest/api/ingestapi.py' 2022-10-31T13:59:20,602 adding 'hca_ingest/api/requests_utils.py' 2022-10-31T13:59:20,605 adding 'hca_ingest/api/stagingapi.py' 2022-10-31T13:59:20,608 adding 'hca_ingest/downloader/__init__.py' 2022-10-31T13:59:20,611 adding 'hca_ingest/downloader/data_collector.py' 2022-10-31T13:59:20,613 adding 'hca_ingest/downloader/downloader.py' 2022-10-31T13:59:20,616 adding 'hca_ingest/downloader/entity.py' 2022-10-31T13:59:20,619 adding 'hca_ingest/downloader/flattener.py' 2022-10-31T13:59:20,621 adding 'hca_ingest/downloader/workbook.py' 2022-10-31T13:59:20,624 adding 'hca_ingest/importer/__init__.py' 2022-10-31T13:59:20,627 adding 'hca_ingest/importer/data_node.py' 2022-10-31T13:59:20,632 adding 'hca_ingest/importer/importer.py' 2022-10-31T13:59:20,636 adding 'hca_ingest/importer/conversion/__init__.py' 2022-10-31T13:59:20,638 adding 'hca_ingest/importer/conversion/column_specification.py' 2022-10-31T13:59:20,641 adding 'hca_ingest/importer/conversion/conversion_strategy.py' 2022-10-31T13:59:20,644 adding 'hca_ingest/importer/conversion/data_converter.py' 2022-10-31T13:59:20,646 adding 'hca_ingest/importer/conversion/exceptions.py' 2022-10-31T13:59:20,648 adding 'hca_ingest/importer/conversion/metadata_entity.py' 2022-10-31T13:59:20,652 adding 'hca_ingest/importer/conversion/template_manager.py' 2022-10-31T13:59:20,654 adding 'hca_ingest/importer/conversion/utils.py' 2022-10-31T13:59:20,657 adding 'hca_ingest/importer/spreadsheet/__init__.py' 2022-10-31T13:59:20,660 adding 'hca_ingest/importer/spreadsheet/ingest_workbook.py' 2022-10-31T13:59:20,663 adding 'hca_ingest/importer/spreadsheet/ingest_worksheet.py' 2022-10-31T13:59:20,666 adding 'hca_ingest/importer/submission/__init__.py' 2022-10-31T13:59:20,668 adding 'hca_ingest/importer/submission/entity.py' 2022-10-31T13:59:20,672 adding 'hca_ingest/importer/submission/entity_linker.py' 2022-10-31T13:59:20,674 adding 'hca_ingest/importer/submission/entity_map.py' 2022-10-31T13:59:20,677 adding 'hca_ingest/importer/submission/errors.py' 2022-10-31T13:59:20,680 adding 'hca_ingest/importer/submission/ingest_submitter.py' 2022-10-31T13:59:20,682 adding 'hca_ingest/importer/submission/submission.py' 2022-10-31T13:59:20,685 adding 'hca_ingest/template/__init__.py' 2022-10-31T13:59:20,688 adding 'hca_ingest/template/descriptor.py' 2022-10-31T13:59:20,691 adding 'hca_ingest/template/exceptions.py' 2022-10-31T13:59:20,695 adding 'hca_ingest/template/linked_spreadsheet_builder.py' 2022-10-31T13:59:20,698 adding 'hca_ingest/template/migration_parser.py' 2022-10-31T13:59:20,701 adding 'hca_ingest/template/schema_parser.py' 2022-10-31T13:59:20,706 adding 'hca_ingest/template/schema_template.py' 2022-10-31T13:59:20,709 adding 'hca_ingest/template/spreadsheet_builder.py' 2022-10-31T13:59:20,712 adding 'hca_ingest/template/tab_config.py' 2022-10-31T13:59:20,714 adding 'hca_ingest/template/vanilla_spreadsheet_builder.py' 2022-10-31T13:59:20,718 adding 'hca_ingest/utils/IngestError.py' 2022-10-31T13:59:20,720 adding 'hca_ingest/utils/__init__.py' 2022-10-31T13:59:20,723 adding 'hca_ingest/utils/bundlevalidator.py' 2022-10-31T13:59:20,725 adding 'hca_ingest/utils/date.py' 2022-10-31T13:59:20,727 adding 'hca_ingest/utils/doctict.py' 2022-10-31T13:59:20,729 adding 'hca_ingest/utils/errorreport.py' 2022-10-31T13:59:20,732 adding 'hca_ingest/utils/generate_redaction_manifest.py' 2022-10-31T13:59:20,734 adding 'hca_ingest/utils/spreadsheet.py' 2022-10-31T13:59:20,737 adding 'hca_ingest/utils/token_manager.py' 2022-10-31T13:59:20,739 adding 'hca_ingest/utils/validationreport.py' 2022-10-31T13:59:20,746 adding 'hca_ingest-2.5.2.dist-info/LICENSE' 2022-10-31T13:59:20,749 adding 'hca_ingest-2.5.2.dist-info/METADATA' 2022-10-31T13:59:20,751 adding 'hca_ingest-2.5.2.dist-info/WHEEL' 2022-10-31T13:59:20,752 adding 'hca_ingest-2.5.2.dist-info/top_level.txt' 2022-10-31T13:59:20,754 adding 'hca_ingest-2.5.2.dist-info/RECORD' 2022-10-31T13:59:20,759 removing build/bdist.linux-armv7l/wheel 2022-10-31T13:59:21,022 Building wheel for hca-ingest (setup.py): finished with status 'done' 2022-10-31T13:59:21,031 Created wheel for hca-ingest: filename=hca_ingest-2.5.2-py3-none-any.whl size=70704 sha256=1d13feb99bb849b42d829379ed2348568905d71d6e88c0b708aad5d2a4315711 2022-10-31T13:59:21,033 Stored in directory: /tmp/pip-ephem-wheel-cache-8lm8u82v/wheels/00/e3/87/7a59de116fce67898168ea117990e491cd744d3b3d08525fd0 2022-10-31T13:59:21,068 Successfully built hca-ingest 2022-10-31T13:59:21,080 Removed build tracker: '/tmp/pip-build-tracker-6admeuuo'