2022-11-01T22:33:44,493 Created temporary directory: /tmp/pip-ephem-wheel-cache-61f4hi9q 2022-11-01T22:33:44,498 Created temporary directory: /tmp/pip-build-tracker-1wkjpcn9 2022-11-01T22:33:44,499 Initialized build tracking at /tmp/pip-build-tracker-1wkjpcn9 2022-11-01T22:33:44,499 Created build tracker: /tmp/pip-build-tracker-1wkjpcn9 2022-11-01T22:33:44,499 Entered build tracker: /tmp/pip-build-tracker-1wkjpcn9 2022-11-01T22:33:44,501 Created temporary directory: /tmp/pip-wheel-ved9gqrk 2022-11-01T22:33:44,508 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-01T22:33:44,513 Created temporary directory: /tmp/pip-ephem-wheel-cache-6rkeoo24 2022-11-01T22:33:44,571 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-01T22:33:44,579 2 location(s) to search for versions of sequana: 2022-11-01T22:33:44,579 * https://pypi.org/simple/sequana/ 2022-11-01T22:33:44,579 * https://www.piwheels.org/simple/sequana/ 2022-11-01T22:33:44,580 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2022-11-01T22:33:44,581 Getting page https://pypi.org/simple/sequana/ 2022-11-01T22:33:44,584 Found index url https://pypi.org/simple 2022-11-01T22:33:44,777 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2022-11-01T22:33:44,814 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from 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https://files.pythonhosted.org/packages/28/9c/16feabf3ddcf6c2ecd71eebfba708d6f7c875af4a3584fecd2cbbef8f434/sequana-0.14.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.4 2022-11-01T22:33:44,872 Fetching project page and analyzing links: https://www.piwheels.org/simple/sequana/ 2022-11-01T22:33:44,873 Getting page https://www.piwheels.org/simple/sequana/ 2022-11-01T22:33:44,875 Found index url https://www.piwheels.org/simple 2022-11-01T22:33:45,104 Fetched page https://www.piwheels.org/simple/sequana/ as text/html 2022-11-01T22:33:45,157 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.14.3-py3-none-any.whl#sha256=15559554badf9dd8a9b1b2695e1ddb644b8287de5135ea97185da1e38c822716 (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,158 Skipping link: No binaries permitted for sequana: 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2022-11-01T22:33:45,186 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.19-py3-none-any.whl#sha256=072add6f657fd5ba0c484c282d0eae596f1b81bbbe5d73d01ee428afd896b26e (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,186 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.18-py3-none-any.whl#sha256=325c4e727752bdcd6411fc583c6c67f5c153ccefe6a6fa61a5bb136c4cacb24f (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,187 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.17.1-py3-none-any.whl#sha256=42ab5898af408588dff9d91d1e90f24ce831d1fc6c6298c2ab58efd248995a84 (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,187 Skipping link: No binaries permitted for sequana: 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2022-11-01T22:33:45,189 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.12-py3-none-any.whl#sha256=3f04e8007283308a1ca403222a81dfa0b39e862fc4b273b877ac7c0515aa1bed (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,190 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.11-py3-none-any.whl#sha256=0514b5d913fc13bc5bd0581143c312ce0e8962bd493655d11666cd1ffc4cae27 (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,190 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.10-py3-none-any.whl#sha256=407656fa50b3fc2277e6d63fcd545fc4e9c13092a89a2a5cc782f84d008725b5 (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,191 Skipping link: No binaries permitted for sequana: 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2022-11-01T22:33:45,193 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.5-py3-none-any.whl#sha256=6fba4d02c27c802f9371c940699ef0ece1e24bffb7553bcb9720cc07ca2a66aa (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,193 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.4-py3-none-any.whl#sha256=8f3002523e9b7584a718eb2f1282a811eee489863f47e56aff0094be65fd04d0 (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,194 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.2-py3-none-any.whl#sha256=489f87ea4af5d8111aaf0b2603e4dbc8d44a47ad6a14eb44b2157490ccc4513c (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,194 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,195 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,195 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,196 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2022-11-01T22:33:45,196 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2022-11-01T22:33:45,197 Skipping link: not a file: https://pypi.org/simple/sequana/ 2022-11-01T22:33:45,259 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2022-11-01T22:33:45,290 Collecting sequana==0.14.4 2022-11-01T22:33:45,294 Created temporary directory: /tmp/pip-unpack-8lps7_1o 2022-11-01T22:33:45,991 Downloading sequana-0.14.4.tar.gz (1.5 MB) 2022-11-01T22:33:48,275 Added sequana==0.14.4 from https://files.pythonhosted.org/packages/28/9c/16feabf3ddcf6c2ecd71eebfba708d6f7c875af4a3584fecd2cbbef8f434/sequana-0.14.4.tar.gz to build tracker '/tmp/pip-build-tracker-1wkjpcn9' 2022-11-01T22:33:48,278 Running setup.py (path:/tmp/pip-wheel-ved9gqrk/sequana_35e9d6b531e7486fb5c9258e6aa3f11d/setup.py) egg_info for package sequana 2022-11-01T22:33:48,279 Created temporary directory: /tmp/pip-pip-egg-info-4s2ncqdn 2022-11-01T22:33:48,280 Preparing metadata (setup.py): started 2022-11-01T22:33:48,282 Running command python setup.py egg_info 2022-11-01T22:33:51,215 running egg_info 2022-11-01T22:33:51,220 creating /tmp/pip-pip-egg-info-4s2ncqdn/sequana.egg-info 2022-11-01T22:33:51,272 writing /tmp/pip-pip-egg-info-4s2ncqdn/sequana.egg-info/PKG-INFO 2022-11-01T22:33:51,278 writing dependency_links to /tmp/pip-pip-egg-info-4s2ncqdn/sequana.egg-info/dependency_links.txt 2022-11-01T22:33:51,284 writing entry points to /tmp/pip-pip-egg-info-4s2ncqdn/sequana.egg-info/entry_points.txt 2022-11-01T22:33:51,288 writing requirements to /tmp/pip-pip-egg-info-4s2ncqdn/sequana.egg-info/requires.txt 2022-11-01T22:33:51,290 writing top-level names to /tmp/pip-pip-egg-info-4s2ncqdn/sequana.egg-info/top_level.txt 2022-11-01T22:33:51,292 writing manifest file '/tmp/pip-pip-egg-info-4s2ncqdn/sequana.egg-info/SOURCES.txt' 2022-11-01T22:33:51,990 reading manifest file '/tmp/pip-pip-egg-info-4s2ncqdn/sequana.egg-info/SOURCES.txt' 2022-11-01T22:33:51,993 reading manifest template 'MANIFEST.in' 2022-11-01T22:33:52,000 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-11-01T22:33:52,003 warning: no previously-included files matching '*pyc' found under directory '*' 2022-11-01T22:33:52,371 warning: no files found matching 'test/requirements*txt' 2022-11-01T22:33:52,374 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-11-01T22:33:52,376 warning: no previously-included files matching '*' found under directory 'test' 2022-11-01T22:33:52,378 warning: no previously-included files matching '*' found under directory 'doc' 2022-11-01T22:33:52,380 warning: no previously-included files found matching 'sequana/rm2.py' 2022-11-01T22:33:52,381 adding license file 'LICENSE' 2022-11-01T22:33:52,421 writing manifest file '/tmp/pip-pip-egg-info-4s2ncqdn/sequana.egg-info/SOURCES.txt' 2022-11-01T22:33:52,627 Preparing metadata (setup.py): finished with status 'done' 2022-11-01T22:33:52,644 Source in /tmp/pip-wheel-ved9gqrk/sequana_35e9d6b531e7486fb5c9258e6aa3f11d has version 0.14.4, which satisfies requirement sequana==0.14.4 from https://files.pythonhosted.org/packages/28/9c/16feabf3ddcf6c2ecd71eebfba708d6f7c875af4a3584fecd2cbbef8f434/sequana-0.14.4.tar.gz 2022-11-01T22:33:52,646 Removed sequana==0.14.4 from https://files.pythonhosted.org/packages/28/9c/16feabf3ddcf6c2ecd71eebfba708d6f7c875af4a3584fecd2cbbef8f434/sequana-0.14.4.tar.gz from build tracker '/tmp/pip-build-tracker-1wkjpcn9' 2022-11-01T22:33:52,663 Created temporary directory: /tmp/pip-unpack-l8o1xzro 2022-11-01T22:33:52,664 Building wheels for collected packages: sequana 2022-11-01T22:33:52,674 Created temporary directory: /tmp/pip-wheel-zoq8fsn1 2022-11-01T22:33:52,675 Building wheel for sequana (setup.py): started 2022-11-01T22:33:52,677 Destination directory: /tmp/pip-wheel-zoq8fsn1 2022-11-01T22:33:52,677 Running command python setup.py bdist_wheel 2022-11-01T22:33:55,490 running bdist_wheel 2022-11-01T22:33:55,648 running build 2022-11-01T22:33:55,649 running build_py 2022-11-01T22:33:55,713 creating build 2022-11-01T22:33:55,713 creating build/lib 2022-11-01T22:33:55,714 creating build/lib/sequana 2022-11-01T22:33:55,717 copying sequana/taxonomy.py -> build/lib/sequana 2022-11-01T22:33:55,722 copying sequana/lazy.py -> build/lib/sequana 2022-11-01T22:33:55,725 copying sequana/kegg.py -> build/lib/sequana 2022-11-01T22:33:55,728 copying sequana/misc.py -> build/lib/sequana 2022-11-01T22:33:55,732 copying sequana/gff3.py -> build/lib/sequana 2022-11-01T22:33:55,737 copying sequana/mh.py -> build/lib/sequana 2022-11-01T22:33:55,740 copying sequana/jsontool.py -> build/lib/sequana 2022-11-01T22:33:55,743 copying sequana/featurecounts.py -> build/lib/sequana 2022-11-01T22:33:55,748 copying sequana/snpeff.py -> build/lib/sequana 2022-11-01T22:33:55,752 copying sequana/assembly.py -> build/lib/sequana 2022-11-01T22:33:55,756 copying sequana/genbank.py -> build/lib/sequana 2022-11-01T22:33:55,760 copying sequana/pacbio.py -> build/lib/sequana 2022-11-01T22:33:55,766 copying sequana/trf.py -> build/lib/sequana 2022-11-01T22:33:55,770 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2022-11-01T22:33:55,775 copying sequana/stats.py -> build/lib/sequana 2022-11-01T22:33:55,778 copying sequana/running_median.py -> build/lib/sequana 2022-11-01T22:33:55,782 copying sequana/protein.py -> build/lib/sequana 2022-11-01T22:33:55,785 copying sequana/sniffer.py -> build/lib/sequana 2022-11-01T22:33:55,789 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2022-11-01T22:33:55,793 copying sequana/coverage.py -> build/lib/sequana 2022-11-01T22:33:55,797 copying sequana/itol.py -> build/lib/sequana 2022-11-01T22:33:55,801 copying sequana/vcftools.py -> build/lib/sequana 2022-11-01T22:33:55,804 copying sequana/find_motif.py -> build/lib/sequana 2022-11-01T22:33:55,808 copying sequana/iuapc.py -> build/lib/sequana 2022-11-01T22:33:55,812 copying sequana/salmon.py -> build/lib/sequana 2022-11-01T22:33:55,816 copying sequana/vst.py -> build/lib/sequana 2022-11-01T22:33:55,819 copying sequana/contigs.py -> build/lib/sequana 2022-11-01T22:33:55,823 copying sequana/tools.py -> build/lib/sequana 2022-11-01T22:33:55,828 copying sequana/fasta.py -> build/lib/sequana 2022-11-01T22:33:55,832 copying sequana/cnv.py -> build/lib/sequana 2022-11-01T22:33:55,835 copying sequana/cpg_islands.py -> build/lib/sequana 2022-11-01T22:33:55,838 copying sequana/criteria.py -> build/lib/sequana 2022-11-01T22:33:55,841 copying sequana/gtf.py -> build/lib/sequana 2022-11-01T22:33:55,844 copying sequana/demultiplex.py -> build/lib/sequana 2022-11-01T22:33:55,848 copying sequana/bedtools.py -> build/lib/sequana 2022-11-01T22:33:55,860 copying sequana/errors.py -> build/lib/sequana 2022-11-01T22:33:55,863 copying sequana/bed.py -> build/lib/sequana 2022-11-01T22:33:55,867 copying sequana/canu_scanner.py -> build/lib/sequana 2022-11-01T22:33:55,870 copying sequana/compare.py -> build/lib/sequana 2022-11-01T22:33:55,875 copying sequana/chipseq.py -> build/lib/sequana 2022-11-01T22:33:55,897 copying sequana/ribodesigner.py -> build/lib/sequana 2022-11-01T22:33:55,901 copying sequana/fastq.py -> build/lib/sequana 2022-11-01T22:33:55,906 copying sequana/databases.py -> build/lib/sequana 2022-11-01T22:33:55,911 copying sequana/summary.py -> build/lib/sequana 2022-11-01T22:33:55,914 copying sequana/krona.py -> build/lib/sequana 2022-11-01T22:33:55,917 copying sequana/lazyimports.py -> build/lib/sequana 2022-11-01T22:33:55,921 copying sequana/sequence.py -> build/lib/sequana 2022-11-01T22:33:55,926 copying sequana/kmer.py -> build/lib/sequana 2022-11-01T22:33:55,929 copying sequana/mixture.py -> build/lib/sequana 2022-11-01T22:33:55,934 copying sequana/__init__.py -> build/lib/sequana 2022-11-01T22:33:55,937 copying sequana/phred.py -> build/lib/sequana 2022-11-01T22:33:55,941 copying sequana/isoseq.py -> build/lib/sequana 2022-11-01T22:33:55,946 copying sequana/bamtools.py -> build/lib/sequana 2022-11-01T22:33:55,953 copying sequana/iem.py -> build/lib/sequana 2022-11-01T22:33:55,957 copying sequana/datatools.py -> build/lib/sequana 2022-11-01T22:33:55,960 copying sequana/mgi.py -> build/lib/sequana 2022-11-01T22:33:55,963 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2022-11-01T22:33:55,967 copying sequana/macs3.py -> build/lib/sequana 2022-11-01T22:33:55,971 copying sequana/vcf_filter.py -> build/lib/sequana 2022-11-01T22:33:55,976 copying sequana/cigar.py -> build/lib/sequana 2022-11-01T22:33:55,980 copying sequana/fastqc.py -> build/lib/sequana 2022-11-01T22:33:55,984 copying sequana/rnadiff.py -> build/lib/sequana 2022-11-01T22:33:55,991 creating build/lib/sequana/resources 2022-11-01T22:33:55,993 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2022-11-01T22:33:55,998 creating build/lib/sequana/enrichment 2022-11-01T22:33:55,999 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2022-11-01T22:33:56,004 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2022-11-01T22:33:56,008 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2022-11-01T22:33:56,011 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2022-11-01T22:33:56,015 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2022-11-01T22:33:56,019 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2022-11-01T22:33:56,023 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2022-11-01T22:33:56,027 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2022-11-01T22:33:56,030 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2022-11-01T22:33:56,035 creating build/lib/sequana/scripts 2022-11-01T22:33:56,036 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2022-11-01T22:33:56,041 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2022-11-01T22:33:56,045 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2022-11-01T22:33:56,050 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2022-11-01T22:33:56,053 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2022-11-01T22:33:56,057 creating build/lib/sequana/plots 2022-11-01T22:33:56,058 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2022-11-01T22:33:56,062 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2022-11-01T22:33:56,066 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2022-11-01T22:33:56,070 creating build/lib/sequana/rules 2022-11-01T22:33:56,072 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2022-11-01T22:33:56,077 creating build/lib/sequana/multiqc 2022-11-01T22:33:56,078 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,082 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,087 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,091 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,094 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,097 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,102 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,105 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,108 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,111 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,115 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,119 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2022-11-01T22:33:56,126 creating build/lib/sequana/modules_report 2022-11-01T22:33:56,129 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,133 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,137 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,141 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,145 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,148 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,153 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,158 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,161 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,164 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,169 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,173 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,177 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,181 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,185 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,188 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,192 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,195 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,199 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,203 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,206 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2022-11-01T22:33:56,212 creating build/lib/sequana/kraken 2022-11-01T22:33:56,214 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2022-11-01T22:33:56,220 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2022-11-01T22:33:56,224 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2022-11-01T22:33:56,230 creating build/lib/sequana/viz 2022-11-01T22:33:56,232 copying sequana/viz/venn.py -> build/lib/sequana/viz 2022-11-01T22:33:56,236 copying sequana/viz/anova.py -> build/lib/sequana/viz 2022-11-01T22:33:56,239 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2022-11-01T22:33:56,243 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2022-11-01T22:33:56,246 copying sequana/viz/pca.py -> build/lib/sequana/viz 2022-11-01T22:33:56,250 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2022-11-01T22:33:56,255 copying sequana/viz/core.py -> build/lib/sequana/viz 2022-11-01T22:33:56,259 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2022-11-01T22:33:56,263 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2022-11-01T22:33:56,267 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2022-11-01T22:33:56,271 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2022-11-01T22:33:56,274 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2022-11-01T22:33:56,278 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2022-11-01T22:33:56,282 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2022-11-01T22:33:56,285 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2022-11-01T22:33:56,289 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2022-11-01T22:33:56,293 copying sequana/viz/mds.py -> build/lib/sequana/viz 2022-11-01T22:33:56,296 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2022-11-01T22:33:56,301 creating build/lib/sequana/utils 2022-11-01T22:33:56,302 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2022-11-01T22:33:56,306 copying sequana/utils/tree.py -> build/lib/sequana/utils 2022-11-01T22:33:56,310 copying sequana/utils/config.py -> build/lib/sequana/utils 2022-11-01T22:33:56,313 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2022-11-01T22:33:56,318 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2022-11-01T22:33:56,321 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2022-11-01T22:33:56,325 creating build/lib/sequana/resources/canvas 2022-11-01T22:33:56,326 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2022-11-01T22:33:56,329 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2022-11-01T22:33:56,333 creating build/lib/sequana/resources/images 2022-11-01T22:33:56,334 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2022-11-01T22:33:56,339 creating build/lib/sequana/resources/data 2022-11-01T22:33:56,340 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2022-11-01T22:33:56,344 creating build/lib/sequana/resources/js 2022-11-01T22:33:56,345 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2022-11-01T22:33:56,350 creating build/lib/sequana/resources/snpeff 2022-11-01T22:33:56,351 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2022-11-01T22:33:56,355 creating build/lib/sequana/resources/css 2022-11-01T22:33:56,356 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2022-11-01T22:33:56,360 creating build/lib/sequana/resources/templates 2022-11-01T22:33:56,361 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2022-11-01T22:33:56,365 creating build/lib/sequana/resources/examples 2022-11-01T22:33:56,366 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2022-11-01T22:33:56,370 creating build/lib/sequana/resources/doc 2022-11-01T22:33:56,371 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2022-11-01T22:33:56,376 creating build/lib/sequana/resources/testing 2022-11-01T22:33:56,378 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2022-11-01T22:33:56,381 creating build/lib/sequana/resources/doc/rnadiff_compare 2022-11-01T22:33:56,383 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2022-11-01T22:33:56,387 creating build/lib/sequana/resources/doc/rnaseq_0 2022-11-01T22:33:56,388 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2022-11-01T22:33:56,392 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2022-11-01T22:33:56,393 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2022-11-01T22:33:56,397 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-11-01T22:33:56,399 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-11-01T22:33:56,402 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-11-01T22:33:56,404 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-11-01T22:33:56,408 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-11-01T22:33:56,410 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-11-01T22:33:56,416 creating build/lib/sequana/scripts/main 2022-11-01T22:33:56,417 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,421 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,424 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,428 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,431 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,434 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,438 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,441 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,444 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,448 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,451 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,454 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,458 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,462 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,466 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,470 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,474 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,477 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,481 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,485 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,489 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,493 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2022-11-01T22:33:56,498 creating build/lib/sequana/rules/picard-tools 2022-11-01T22:33:56,500 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2022-11-01T22:33:56,505 creating build/lib/sequana/rules/Pacbio 2022-11-01T22:33:56,507 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2022-11-01T22:33:56,511 creating build/lib/sequana/rules/idr 2022-11-01T22:33:56,513 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2022-11-01T22:33:56,518 creating build/lib/sequana/rules/deeptools 2022-11-01T22:33:56,520 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2022-11-01T22:33:56,524 creating build/lib/sequana/rules/Utils 2022-11-01T22:33:56,526 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2022-11-01T22:33:56,531 creating build/lib/sequana/rules/codecs 2022-11-01T22:33:56,533 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2022-11-01T22:33:56,538 creating build/lib/sequana/rules/sambamba 2022-11-01T22:33:56,539 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2022-11-01T22:33:56,544 creating build/lib/sequana/rules/SnpEff 2022-11-01T22:33:56,546 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2022-11-01T22:33:56,956 copying sequana/rules/README.rst -> build/lib/sequana/rules 2022-11-01T22:33:56,961 creating build/lib/sequana/rules/fastq_screen_report 2022-11-01T22:33:56,963 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2022-11-01T22:33:56,968 creating build/lib/sequana/rules/spades 2022-11-01T22:33:56,970 copying sequana/rules/spades/spades.rules -> build/lib/sequana/rules/spades 2022-11-01T22:33:56,974 creating build/lib/sequana/rules/fastqc 2022-11-01T22:33:56,976 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2022-11-01T22:33:56,980 creating build/lib/sequana/rules/format_contigs 2022-11-01T22:33:56,982 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2022-11-01T22:33:56,987 creating build/lib/sequana/rules/feature_counts 2022-11-01T22:33:56,989 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2022-11-01T22:33:56,993 creating build/lib/sequana/rules/spades_get_fastq 2022-11-01T22:33:56,995 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2022-11-01T22:33:56,999 creating build/lib/sequana/rules/bam_quality_filter 2022-11-01T22:33:57,001 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2022-11-01T22:33:57,005 creating build/lib/sequana/rules/igvtools 2022-11-01T22:33:57,007 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2022-11-01T22:33:57,012 creating build/lib/sequana/rules/summary_pipeline 2022-11-01T22:33:57,014 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2022-11-01T22:33:57,018 creating build/lib/sequana/rules/bed_to_gff 2022-11-01T22:33:57,020 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2022-11-01T22:33:57,024 creating build/lib/sequana/rules/sequana_coverage 2022-11-01T22:33:57,026 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2022-11-01T22:33:57,031 creating build/lib/sequana/rules/dag 2022-11-01T22:33:57,033 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2022-11-01T22:33:57,037 creating build/lib/sequana/rules/spikes_counting 2022-11-01T22:33:57,039 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2022-11-01T22:33:57,043 creating build/lib/sequana/rules/bwa_index 2022-11-01T22:33:57,045 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2022-11-01T22:33:57,050 creating build/lib/sequana/rules/freebayes_bcf_filter 2022-11-01T22:33:57,052 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2022-11-01T22:33:57,056 creating build/lib/sequana/rules/pacbio_quality 2022-11-01T22:33:57,058 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2022-11-01T22:33:57,063 creating build/lib/sequana/rules/rnaseqc 2022-11-01T22:33:57,065 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2022-11-01T22:33:57,070 creating build/lib/sequana/rules/indel_realigner 2022-11-01T22:33:57,072 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2022-11-01T22:33:57,077 creating build/lib/sequana/rules/spp 2022-11-01T22:33:57,079 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2022-11-01T22:33:57,083 creating build/lib/sequana/rules/SARTools 2022-11-01T22:33:57,085 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2022-11-01T22:33:57,090 creating build/lib/sequana/rules/revcomp_rule 2022-11-01T22:33:57,092 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2022-11-01T22:33:57,096 creating build/lib/sequana/rules/freebayes 2022-11-01T22:33:57,097 copying sequana/rules/freebayes/freebayes.rules -> build/lib/sequana/rules/freebayes 2022-11-01T22:33:57,101 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-11-01T22:33:57,102 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-11-01T22:33:57,106 creating build/lib/sequana/rules/salmon_mapping 2022-11-01T22:33:57,107 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2022-11-01T22:33:57,111 creating build/lib/sequana/rules/rulegraph 2022-11-01T22:33:57,112 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2022-11-01T22:33:57,116 creating build/lib/sequana/rules/star_index 2022-11-01T22:33:57,117 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2022-11-01T22:33:57,121 creating build/lib/sequana/rules/cutadapt 2022-11-01T22:33:57,122 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2022-11-01T22:33:57,127 creating build/lib/sequana/rules/salmon_index 2022-11-01T22:33:57,129 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2022-11-01T22:33:57,133 creating build/lib/sequana/rules/bamCoverage 2022-11-01T22:33:57,135 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2022-11-01T22:33:57,139 creating build/lib/sequana/rules/multiqc 2022-11-01T22:33:57,141 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2022-11-01T22:33:57,145 creating build/lib/sequana/rules/star_mapping 2022-11-01T22:33:57,147 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2022-11-01T22:33:57,152 creating build/lib/sequana/rules/freebayes_vcf_filter 2022-11-01T22:33:57,153 copying sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/freebayes_vcf_filter 2022-11-01T22:33:57,158 creating build/lib/sequana/rules/samtools_sort 2022-11-01T22:33:57,160 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2022-11-01T22:33:57,164 creating build/lib/sequana/rules/bwa_bam_to_fastq 2022-11-01T22:33:57,166 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2022-11-01T22:33:57,170 creating build/lib/sequana/rules/bowtie2_index 2022-11-01T22:33:57,172 copying sequana/rules/bowtie2_index/bowtie2_index.rules -> build/lib/sequana/rules/bowtie2_index 2022-11-01T22:33:57,177 creating build/lib/sequana/rules/fastp 2022-11-01T22:33:57,179 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2022-11-01T22:33:57,183 creating build/lib/sequana/rules/fastq_screen 2022-11-01T22:33:57,185 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2022-11-01T22:33:57,189 creating build/lib/sequana/rules/mapping_analysis 2022-11-01T22:33:57,191 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2022-11-01T22:33:57,196 creating build/lib/sequana/rules/fastq_sampling 2022-11-01T22:33:57,198 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2022-11-01T22:33:57,201 creating build/lib/sequana/rules/miRNA_count_dynamic 2022-11-01T22:33:57,202 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2022-11-01T22:33:57,206 creating build/lib/sequana/rules/tophat_mapping 2022-11-01T22:33:57,207 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2022-11-01T22:33:57,211 creating build/lib/sequana/rules/quast 2022-11-01T22:33:57,212 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2022-11-01T22:33:57,216 creating build/lib/sequana/rules/prokka 2022-11-01T22:33:57,217 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2022-11-01T22:33:57,221 creating build/lib/sequana/rules/samtools_depth 2022-11-01T22:33:57,223 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2022-11-01T22:33:57,226 creating build/lib/sequana/rules/DupRadar 2022-11-01T22:33:57,228 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2022-11-01T22:33:57,231 creating build/lib/sequana/rules/falco 2022-11-01T22:33:57,232 copying sequana/rules/falco/falco.rules -> build/lib/sequana/rules/falco 2022-11-01T22:33:57,236 creating build/lib/sequana/rules/preSARTools 2022-11-01T22:33:57,237 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2022-11-01T22:33:57,241 creating build/lib/sequana/rules/canu 2022-11-01T22:33:57,242 copying sequana/rules/canu/canu.rules -> build/lib/sequana/rules/canu 2022-11-01T22:33:57,246 creating build/lib/sequana/rules/extract_fasta_from_bed 2022-11-01T22:33:57,247 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2022-11-01T22:33:57,251 creating build/lib/sequana/rules/copy_multiple_files 2022-11-01T22:33:57,252 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2022-11-01T22:33:57,256 creating build/lib/sequana/rules/multiqc2 2022-11-01T22:33:57,257 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2022-11-01T22:33:57,261 creating build/lib/sequana/rules/picard-tools/add_read_group 2022-11-01T22:33:57,262 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2022-11-01T22:33:57,266 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-11-01T22:33:57,267 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-11-01T22:33:57,271 creating build/lib/sequana/rules/picard-tools/reorderSam 2022-11-01T22:33:57,272 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2022-11-01T22:33:57,276 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2022-11-01T22:33:57,277 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2022-11-01T22:33:57,281 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-11-01T22:33:57,282 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-11-01T22:33:57,286 creating build/lib/sequana/rules/idr/intersectionApproach 2022-11-01T22:33:57,288 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2022-11-01T22:33:57,291 creating build/lib/sequana/rules/idr/union_peaks 2022-11-01T22:33:57,293 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2022-11-01T22:33:57,297 creating build/lib/sequana/rules/idr/compute_idr 2022-11-01T22:33:57,298 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2022-11-01T22:33:57,302 creating build/lib/sequana/rules/idr/metrics_peaks 2022-11-01T22:33:57,303 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2022-11-01T22:33:57,307 creating build/lib/sequana/rules/idr/stats_peakCalling 2022-11-01T22:33:57,308 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2022-11-01T22:33:57,312 creating build/lib/sequana/rules/idr/select_peaks 2022-11-01T22:33:57,313 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2022-11-01T22:33:57,317 creating build/lib/sequana/rules/idr/preIDR_dynamic 2022-11-01T22:33:57,318 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2022-11-01T22:33:57,323 creating build/lib/sequana/rules/multiqc/2.0 2022-11-01T22:33:57,324 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2022-11-01T22:33:57,328 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-11-01T22:33:57,330 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-11-01T22:33:57,333 creating build/lib/sequana/rules/deeptools/plotCoverage 2022-11-01T22:33:57,335 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2022-11-01T22:33:57,339 creating build/lib/sequana/rules/deeptools/plotCorrelation 2022-11-01T22:33:57,340 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2022-11-01T22:33:57,344 creating build/lib/sequana/rules/deeptools/multiBamSummary 2022-11-01T22:33:57,345 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2022-11-01T22:33:57,349 creating build/lib/sequana/rules/kraken 2022-11-01T22:33:57,349 creating build/lib/sequana/rules/kraken/1.0 2022-11-01T22:33:57,351 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2022-11-01T22:33:57,355 creating build/lib/sequana/rules/kraken/2.0 2022-11-01T22:33:57,356 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2022-11-01T22:33:57,360 creating build/lib/sequana/rules/kraken/1.1 2022-11-01T22:33:57,362 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2022-11-01T22:33:57,366 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2022-11-01T22:33:57,368 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2022-11-01T22:33:57,372 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2022-11-01T22:33:57,373 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2022-11-01T22:33:57,377 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2022-11-01T22:33:57,379 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2022-11-01T22:33:57,383 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-11-01T22:33:57,384 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-11-01T22:33:57,388 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-11-01T22:33:57,390 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-11-01T22:33:57,394 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2022-11-01T22:33:57,395 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2022-11-01T22:33:57,399 creating build/lib/sequana/rules/codecs/gz_to_fastq 2022-11-01T22:33:57,400 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2022-11-01T22:33:57,404 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2022-11-01T22:33:57,406 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2022-11-01T22:33:57,410 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-11-01T22:33:57,411 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-11-01T22:33:57,415 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-11-01T22:33:57,417 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-11-01T22:33:57,421 creating build/lib/sequana/rules/codecs/fastq_to_gz 2022-11-01T22:33:57,422 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2022-11-01T22:33:57,426 creating build/lib/sequana/rules/codecs/bz2_to_gz 2022-11-01T22:33:57,427 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2022-11-01T22:33:57,431 creating build/lib/sequana/rules/codecs/gz_to_bz2 2022-11-01T22:33:57,433 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2022-11-01T22:33:57,437 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2022-11-01T22:33:57,438 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2022-11-01T22:33:57,442 creating build/lib/sequana/rules/sambamba/sambamba_filter 2022-11-01T22:33:57,444 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2022-11-01T22:33:57,448 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-11-01T22:33:57,449 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-11-01T22:33:57,453 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-11-01T22:33:57,454 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-11-01T22:33:57,456 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-11-01T22:33:57,460 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-11-01T22:33:57,461 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-11-01T22:33:57,465 creating build/lib/sequana/rules/SnpEff/snpeff 2022-11-01T22:33:57,466 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-11-01T22:33:57,468 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-11-01T22:33:57,472 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-11-01T22:33:57,473 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-11-01T22:33:57,477 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2022-11-01T22:33:57,482 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2022-11-01T22:33:57,485 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2022-11-01T22:33:57,491 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2022-11-01T22:33:57,498 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2022-11-01T22:33:57,501 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2022-11-01T22:33:57,505 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2022-11-01T22:33:57,510 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2022-11-01T22:33:57,520 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2022-11-01T22:33:57,540 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2022-11-01T22:33:57,564 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2022-11-01T22:33:57,568 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2022-11-01T22:33:57,579 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,588 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,608 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,618 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,623 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,632 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,637 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,655 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,659 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,665 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,674 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,680 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,685 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2022-11-01T22:33:57,688 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2022-11-01T22:33:57,693 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2022-11-01T22:33:57,698 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2022-11-01T22:33:57,703 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2022-11-01T22:33:57,707 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2022-11-01T22:33:57,719 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2022-11-01T22:33:57,723 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2022-11-01T22:33:57,727 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2022-11-01T22:33:57,731 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2022-11-01T22:33:57,735 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2022-11-01T22:33:57,739 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2022-11-01T22:33:57,743 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2022-11-01T22:33:57,749 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2022-11-01T22:33:57,755 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,759 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,763 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,799 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,803 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,808 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,814 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,818 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,841 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,845 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,849 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,853 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,857 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,860 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,864 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,883 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,888 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2022-11-01T22:33:57,893 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2022-11-01T22:33:58,011 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-01T22:33:58,011 setuptools.SetuptoolsDeprecationWarning, 2022-11-01T22:33:58,065 installing to build/bdist.linux-armv7l/wheel 2022-11-01T22:33:58,065 running install 2022-11-01T22:33:58,129 running install_lib 2022-11-01T22:33:58,185 creating build/bdist.linux-armv7l 2022-11-01T22:33:58,186 creating build/bdist.linux-armv7l/wheel 2022-11-01T22:33:58,192 creating build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,193 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,199 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,202 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,207 creating build/bdist.linux-armv7l/wheel/sequana/resources 2022-11-01T22:33:58,209 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-11-01T22:33:58,211 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-11-01T22:33:58,215 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-11-01T22:33:58,219 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-01T22:33:58,220 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-01T22:33:58,224 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-01T22:33:58,229 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-01T22:33:58,232 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-01T22:33:58,239 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,240 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,244 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,254 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,257 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,276 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,298 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,302 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,312 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,318 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-01T22:33:58,323 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,325 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,335 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,356 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,365 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,369 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,377 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,381 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,398 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,402 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,408 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,410 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,418 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,423 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,427 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-01T22:33:58,431 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-11-01T22:33:58,433 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-11-01T22:33:58,438 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-11-01T22:33:58,442 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-01T22:33:58,443 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-01T22:33:58,447 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-01T22:33:58,451 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-01T22:33:58,455 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-01T22:33:58,465 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-01T22:33:58,469 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-01T22:33:58,472 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-01T22:33:58,473 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-01T22:33:58,477 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-01T22:33:58,480 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-01T22:33:58,483 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-01T22:33:58,486 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-01T22:33:58,491 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-01T22:33:58,492 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-01T22:33:58,497 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-01T22:33:58,500 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-01T22:33:58,504 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-01T22:33:58,507 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2022-11-01T22:33:58,510 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-11-01T22:33:58,513 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-11-01T22:33:58,514 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-11-01T22:33:58,519 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2022-11-01T22:33:58,521 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2022-11-01T22:33:58,524 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-11-01T22:33:58,525 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-11-01T22:33:58,529 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-11-01T22:33:58,531 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-11-01T22:33:58,534 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2022-11-01T22:33:58,538 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-11-01T22:33:58,539 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-11-01T22:33:58,542 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2022-11-01T22:33:58,545 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-11-01T22:33:58,549 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,550 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,583 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,586 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,589 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,592 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,597 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,600 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,603 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,624 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,628 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,632 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,636 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,640 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,644 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,648 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,668 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,672 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,675 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,679 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-01T22:33:58,683 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,687 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,689 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,694 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,699 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,702 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,706 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,709 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,714 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,718 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,721 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-01T22:33:58,725 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,731 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-01T22:33:58,732 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-01T22:33:58,737 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-01T22:33:58,741 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-01T22:33:58,746 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-01T22:33:58,752 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,754 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,758 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,761 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,765 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,768 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,771 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,774 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,778 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,781 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,785 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,788 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,792 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,796 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,799 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,803 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,806 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,810 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,813 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,816 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,820 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,823 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,826 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-01T22:33:58,830 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-01T22:33:58,833 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,837 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,840 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,845 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,850 creating build/bdist.linux-armv7l/wheel/sequana/plots 2022-11-01T22:33:58,852 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-11-01T22:33:58,856 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-11-01T22:33:58,861 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-11-01T22:33:58,863 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,868 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,872 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,877 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,881 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,885 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,888 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,892 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,895 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,898 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,902 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,908 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,912 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,916 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,920 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,923 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,927 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,931 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,934 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,939 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,943 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,946 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:58,952 creating build/bdist.linux-armv7l/wheel/sequana/rules 2022-11-01T22:33:58,954 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-11-01T22:33:58,957 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-11-01T22:33:58,959 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-11-01T22:33:58,963 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-11-01T22:33:58,964 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-11-01T22:33:58,969 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-11-01T22:33:58,970 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-11-01T22:33:58,974 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-11-01T22:33:58,975 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-11-01T22:33:58,980 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-11-01T22:33:58,981 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-11-01T22:33:58,985 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-11-01T22:33:58,989 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-11-01T22:33:58,990 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-11-01T22:33:58,995 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades 2022-11-01T22:33:58,996 copying build/lib/sequana/rules/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades 2022-11-01T22:33:59,001 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-11-01T22:33:59,002 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-11-01T22:33:59,006 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-11-01T22:33:59,008 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-11-01T22:33:59,012 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2022-11-01T22:33:59,013 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2022-11-01T22:33:59,018 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-11-01T22:33:59,020 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-11-01T22:33:59,024 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-11-01T22:33:59,025 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-11-01T22:33:59,030 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-11-01T22:33:59,031 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-11-01T22:33:59,035 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-11-01T22:33:59,036 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-11-01T22:33:59,040 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-11-01T22:33:59,041 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-11-01T22:33:59,046 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-11-01T22:33:59,047 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-11-01T22:33:59,051 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2022-11-01T22:33:59,052 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2022-11-01T22:33:59,057 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-11-01T22:33:59,058 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-11-01T22:33:59,062 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-11-01T22:33:59,066 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-11-01T22:33:59,067 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-11-01T22:33:59,072 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2022-11-01T22:33:59,073 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2022-11-01T22:33:59,077 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-11-01T22:33:59,079 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-11-01T22:33:59,083 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-11-01T22:33:59,084 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-11-01T22:33:59,089 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-11-01T22:33:59,091 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-11-01T22:33:59,096 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-11-01T22:33:59,098 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-11-01T22:33:59,102 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-11-01T22:33:59,103 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-11-01T22:33:59,108 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2022-11-01T22:33:59,109 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2022-11-01T22:33:59,114 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-11-01T22:33:59,116 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-11-01T22:33:59,118 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-11-01T22:33:59,122 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-11-01T22:33:59,123 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-11-01T22:33:59,128 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-11-01T22:33:59,129 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-11-01T22:33:59,134 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-11-01T22:33:59,135 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-11-01T22:33:59,138 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-11-01T22:33:59,142 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-11-01T22:33:59,143 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-11-01T22:33:59,147 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-11-01T22:33:59,149 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-11-01T22:33:59,153 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-11-01T22:33:59,154 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-11-01T22:33:59,160 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-11-01T22:33:59,161 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-11-01T22:33:59,165 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-11-01T22:33:59,167 copying build/lib/sequana/rules/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-11-01T22:33:59,171 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-11-01T22:33:59,172 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-11-01T22:33:59,177 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-11-01T22:33:59,178 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-11-01T22:33:59,182 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-11-01T22:33:59,183 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-11-01T22:33:59,188 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2022-11-01T22:33:59,189 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2022-11-01T22:33:59,193 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-11-01T22:33:59,195 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-11-01T22:33:59,199 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-11-01T22:33:59,201 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-11-01T22:33:59,205 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-11-01T22:33:59,206 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-11-01T22:33:59,211 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-11-01T22:33:59,212 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-11-01T22:33:59,216 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-11-01T22:33:59,218 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-11-01T22:33:59,222 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2022-11-01T22:33:59,223 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2022-11-01T22:33:59,228 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-11-01T22:33:59,229 copying build/lib/sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-11-01T22:33:59,233 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-11-01T22:33:59,235 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-11-01T22:33:59,239 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-11-01T22:33:59,241 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-11-01T22:33:59,243 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-11-01T22:33:59,248 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-11-01T22:33:59,249 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-11-01T22:33:59,253 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-11-01T22:33:59,254 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-11-01T22:33:59,259 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-11-01T22:33:59,260 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-11-01T22:33:59,263 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-11-01T22:33:59,267 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-11-01T22:33:59,268 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-11-01T22:33:59,272 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2022-11-01T22:33:59,274 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-11-01T22:33:59,276 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-11-01T22:33:59,281 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-11-01T22:33:59,283 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-11-01T22:33:59,287 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-11-01T22:33:59,289 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-11-01T22:33:59,295 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2022-11-01T22:33:59,297 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2022-11-01T22:33:59,301 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2022-11-01T22:33:59,303 copying build/lib/sequana/rules/bowtie2_index/bowtie2_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2022-11-01T22:33:59,308 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-11-01T22:33:59,311 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2022-11-01T22:33:59,313 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2022-11-01T22:33:59,318 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-11-01T22:33:59,320 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-11-01T22:33:59,325 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-11-01T22:33:59,327 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-11-01T22:33:59,332 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-11-01T22:33:59,334 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-11-01T22:33:59,338 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-11-01T22:33:59,340 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-11-01T22:33:59,345 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-11-01T22:33:59,348 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-11-01T22:33:59,352 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-11-01T22:33:59,354 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-11-01T22:33:59,359 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-11-01T22:33:59,361 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-11-01T22:33:59,367 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-11-01T22:33:59,369 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-11-01T22:33:59,374 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-11-01T22:33:59,376 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-11-01T22:33:59,381 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-11-01T22:33:59,382 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-11-01T22:33:59,386 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-11-01T22:33:59,389 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2022-11-01T22:33:59,391 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2022-11-01T22:33:59,395 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2022-11-01T22:33:59,397 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2022-11-01T22:33:59,401 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-11-01T22:33:59,402 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-11-01T22:33:59,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-11-01T22:33:59,408 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-11-01T22:33:59,413 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2022-11-01T22:33:59,414 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2022-11-01T22:33:59,419 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-11-01T22:33:59,420 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-11-01T22:33:59,425 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-11-01T22:33:59,426 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-11-01T22:33:59,431 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-11-01T22:33:59,432 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-11-01T22:33:59,438 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-11-01T22:33:59,440 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-11-01T22:33:59,442 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-11-01T22:33:59,446 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-11-01T22:33:59,448 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-11-01T22:33:59,451 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-11-01T22:33:59,455 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2022-11-01T22:33:59,457 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2022-11-01T22:33:59,461 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-11-01T22:33:59,463 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-11-01T22:33:59,468 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-11-01T22:33:59,470 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-11-01T22:33:59,473 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-11-01T22:33:59,475 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-11-01T22:33:59,479 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-11-01T22:33:59,481 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-11-01T22:33:59,485 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2022-11-01T22:33:59,488 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-11-01T22:33:59,489 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-11-01T22:33:59,494 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-11-01T22:33:59,495 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-11-01T22:33:59,500 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-11-01T22:33:59,502 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-11-01T22:33:59,505 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-11-01T22:33:59,509 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-11-01T22:33:59,510 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-11-01T22:33:59,515 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-11-01T22:33:59,517 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-11-01T22:33:59,520 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-11-01T22:33:59,524 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco 2022-11-01T22:33:59,525 copying build/lib/sequana/rules/falco/falco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco 2022-11-01T22:33:59,530 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2022-11-01T22:33:59,531 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2022-11-01T22:33:59,537 creating build/bdist.linux-armv7l/wheel/sequana/rules/canu 2022-11-01T22:33:59,538 copying build/lib/sequana/rules/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/canu 2022-11-01T22:33:59,543 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-11-01T22:33:59,544 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-11-01T22:33:59,549 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-11-01T22:33:59,550 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-11-01T22:33:59,555 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-11-01T22:33:59,556 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-11-01T22:33:59,560 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,564 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,568 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,570 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,574 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,578 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,582 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,586 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,589 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,593 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,597 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,601 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,604 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,607 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,611 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,615 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-01T22:33:59,618 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,622 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,631 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,633 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,637 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,641 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,646 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,651 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,654 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,659 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,665 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,669 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,673 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,678 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,683 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,688 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,692 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,697 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,701 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,706 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,710 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,714 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,719 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,723 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-01T22:33:59,729 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2022-11-01T22:33:59,731 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-11-01T22:33:59,739 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-11-01T22:33:59,744 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-11-01T22:33:59,747 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,751 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,755 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,760 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,765 copying build/lib/sequana/chipseq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,771 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,776 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,781 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,786 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,792 creating build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,793 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,797 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,801 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,804 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,809 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,813 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,818 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,822 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,826 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,830 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,834 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,837 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,841 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,844 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,848 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,852 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,856 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,860 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-01T22:33:59,863 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,866 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,870 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,875 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,878 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,883 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,886 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,890 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,896 creating build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-01T22:33:59,897 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-01T22:33:59,901 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-01T22:33:59,904 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-01T22:33:59,908 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-01T22:33:59,912 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-01T22:33:59,916 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-01T22:33:59,918 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,925 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,929 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,932 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,935 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,939 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,943 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,947 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,951 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,955 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-01T22:33:59,962 running install_egg_info 2022-11-01T22:34:00,098 running egg_info 2022-11-01T22:34:00,149 writing sequana.egg-info/PKG-INFO 2022-11-01T22:34:00,153 writing dependency_links to sequana.egg-info/dependency_links.txt 2022-11-01T22:34:00,159 writing entry points to sequana.egg-info/entry_points.txt 2022-11-01T22:34:00,162 writing requirements to sequana.egg-info/requires.txt 2022-11-01T22:34:00,165 writing top-level names to sequana.egg-info/top_level.txt 2022-11-01T22:34:00,635 reading manifest file 'sequana.egg-info/SOURCES.txt' 2022-11-01T22:34:00,679 reading manifest template 'MANIFEST.in' 2022-11-01T22:34:00,685 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-11-01T22:34:00,690 warning: no previously-included files matching '*pyc' found under directory '*' 2022-11-01T22:34:01,826 warning: no files found matching 'test/requirements*txt' 2022-11-01T22:34:01,831 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-11-01T22:34:01,834 warning: no previously-included files matching '*' found under directory 'test' 2022-11-01T22:34:01,837 warning: no previously-included files matching '*' found under directory 'doc' 2022-11-01T22:34:01,840 warning: no previously-included files found matching 'sequana/rm2.py' 2022-11-01T22:34:01,841 adding license file 'LICENSE' 2022-11-01T22:34:01,897 writing manifest file 'sequana.egg-info/SOURCES.txt' 2022-11-01T22:34:01,901 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.14.4-py3.7.egg-info 2022-11-01T22:34:01,929 running install_scripts 2022-11-01T22:34:02,233 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-11-01T22:34:02,242 creating build/bdist.linux-armv7l/wheel/sequana-0.14.4.dist-info/WHEEL 2022-11-01T22:34:02,246 creating '/tmp/pip-wheel-zoq8fsn1/sequana-0.14.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-01T22:34:02,251 adding 'sequana/__init__.py' 2022-11-01T22:34:02,255 adding 'sequana/assembly.py' 2022-11-01T22:34:02,273 adding 'sequana/bamtools.py' 2022-11-01T22:34:02,278 adding 'sequana/bed.py' 2022-11-01T22:34:02,300 adding 'sequana/bedtools.py' 2022-11-01T22:34:02,305 adding 'sequana/canu_scanner.py' 2022-11-01T22:34:02,315 adding 'sequana/chipseq.py' 2022-11-01T22:34:02,320 adding 'sequana/cigar.py' 2022-11-01T22:34:02,322 adding 'sequana/cnv.py' 2022-11-01T22:34:02,328 adding 'sequana/compare.py' 2022-11-01T22:34:02,333 adding 'sequana/contigs.py' 2022-11-01T22:34:02,337 adding 'sequana/coverage.py' 2022-11-01T22:34:02,339 adding 'sequana/cpg_islands.py' 2022-11-01T22:34:02,342 adding 'sequana/criteria.py' 2022-11-01T22:34:02,347 adding 'sequana/databases.py' 2022-11-01T22:34:02,350 adding 'sequana/datatools.py' 2022-11-01T22:34:02,354 adding 'sequana/demultiplex.py' 2022-11-01T22:34:02,356 adding 'sequana/errors.py' 2022-11-01T22:34:02,360 adding 'sequana/fasta.py' 2022-11-01T22:34:02,372 adding 'sequana/fastq.py' 2022-11-01T22:34:02,376 adding 'sequana/fastqc.py' 2022-11-01T22:34:02,381 adding 'sequana/featurecounts.py' 2022-11-01T22:34:02,385 adding 'sequana/find_motif.py' 2022-11-01T22:34:02,388 adding 'sequana/freebayes_bcf_filter.py' 2022-11-01T22:34:02,393 adding 'sequana/freebayes_vcf_filter.py' 2022-11-01T22:34:02,396 adding 'sequana/genbank.py' 2022-11-01T22:34:02,402 adding 'sequana/gff3.py' 2022-11-01T22:34:02,405 adding 'sequana/gtf.py' 2022-11-01T22:34:02,409 adding 'sequana/iem.py' 2022-11-01T22:34:02,416 adding 'sequana/isoseq.py' 2022-11-01T22:34:02,419 adding 'sequana/itol.py' 2022-11-01T22:34:02,422 adding 'sequana/iuapc.py' 2022-11-01T22:34:02,424 adding 'sequana/jsontool.py' 2022-11-01T22:34:02,427 adding 'sequana/kegg.py' 2022-11-01T22:34:02,429 adding 'sequana/kmer.py' 2022-11-01T22:34:02,432 adding 'sequana/krona.py' 2022-11-01T22:34:02,434 adding 'sequana/lazy.py' 2022-11-01T22:34:02,437 adding 'sequana/lazyimports.py' 2022-11-01T22:34:02,440 adding 'sequana/macs3.py' 2022-11-01T22:34:02,443 adding 'sequana/mgi.py' 2022-11-01T22:34:02,445 adding 'sequana/mh.py' 2022-11-01T22:34:02,448 adding 'sequana/misc.py' 2022-11-01T22:34:02,452 adding 'sequana/mixture.py' 2022-11-01T22:34:02,463 adding 'sequana/pacbio.py' 2022-11-01T22:34:02,468 adding 'sequana/pacbio_amplicon.py' 2022-11-01T22:34:02,471 adding 'sequana/phred.py' 2022-11-01T22:34:02,473 adding 'sequana/protein.py' 2022-11-01T22:34:02,478 adding 'sequana/ribodesigner.py' 2022-11-01T22:34:02,492 adding 'sequana/rnadiff.py' 2022-11-01T22:34:02,496 adding 'sequana/running_median.py' 2022-11-01T22:34:02,500 adding 'sequana/salmon.py' 2022-11-01T22:34:02,509 adding 'sequana/sequence.py' 2022-11-01T22:34:02,512 adding 'sequana/sniffer.py' 2022-11-01T22:34:02,516 adding 'sequana/snpeff.py' 2022-11-01T22:34:02,519 adding 'sequana/stats.py' 2022-11-01T22:34:02,522 adding 'sequana/summary.py' 2022-11-01T22:34:02,527 adding 'sequana/taxonomy.py' 2022-11-01T22:34:02,533 adding 'sequana/tools.py' 2022-11-01T22:34:02,537 adding 'sequana/trf.py' 2022-11-01T22:34:02,541 adding 'sequana/vcf_filter.py' 2022-11-01T22:34:02,545 adding 'sequana/vcftools.py' 2022-11-01T22:34:02,548 adding 'sequana/vst.py' 2022-11-01T22:34:02,550 adding 'sequana/enrichment/__init__.py' 2022-11-01T22:34:02,552 adding 'sequana/enrichment/gsea.py' 2022-11-01T22:34:02,559 adding 'sequana/enrichment/kegg.py' 2022-11-01T22:34:02,562 adding 'sequana/enrichment/mart.py' 2022-11-01T22:34:02,564 adding 'sequana/enrichment/ontology.py' 2022-11-01T22:34:02,570 adding 'sequana/enrichment/panther.py' 2022-11-01T22:34:02,575 adding 'sequana/enrichment/plot_go_terms.py' 2022-11-01T22:34:02,578 adding 'sequana/enrichment/quickgo.py' 2022-11-01T22:34:02,582 adding 'sequana/enrichment/uniprot_enrichment.py' 2022-11-01T22:34:02,585 adding 'sequana/kraken/__init__.py' 2022-11-01T22:34:02,599 adding 'sequana/kraken/analysis.py' 2022-11-01T22:34:02,603 adding 'sequana/kraken/multikraken.py' 2022-11-01T22:34:02,606 adding 'sequana/modules_report/__init__.py' 2022-11-01T22:34:02,609 adding 'sequana/modules_report/bamqc.py' 2022-11-01T22:34:02,613 adding 'sequana/modules_report/base_module.py' 2022-11-01T22:34:02,616 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2022-11-01T22:34:02,622 adding 'sequana/modules_report/coverage.py' 2022-11-01T22:34:02,629 adding 'sequana/modules_report/cutadapt.py' 2022-11-01T22:34:02,633 adding 'sequana/modules_report/fastq_stats.py' 2022-11-01T22:34:02,635 adding 'sequana/modules_report/fastqc.py' 2022-11-01T22:34:02,638 adding 'sequana/modules_report/joint_calling.py' 2022-11-01T22:34:02,641 adding 'sequana/modules_report/kegg_enrichment.py' 2022-11-01T22:34:02,644 adding 'sequana/modules_report/kraken.py' 2022-11-01T22:34:02,649 adding 'sequana/modules_report/multi_summary.py' 2022-11-01T22:34:02,652 adding 'sequana/modules_report/pacbio_input_bam.py' 2022-11-01T22:34:02,656 adding 'sequana/modules_report/panther_enrichment.py' 2022-11-01T22:34:02,659 adding 'sequana/modules_report/phix.py' 2022-11-01T22:34:02,662 adding 'sequana/modules_report/quast.py' 2022-11-01T22:34:02,667 adding 'sequana/modules_report/rnadiff.py' 2022-11-01T22:34:02,671 adding 'sequana/modules_report/summary.py' 2022-11-01T22:34:02,674 adding 'sequana/modules_report/trf.py' 2022-11-01T22:34:02,677 adding 'sequana/modules_report/uniprot_enrichment.py' 2022-11-01T22:34:02,680 adding 'sequana/modules_report/variant_calling.py' 2022-11-01T22:34:02,683 adding 'sequana/multiqc/__init__.py' 2022-11-01T22:34:02,687 adding 'sequana/multiqc/bamtools_stats.py' 2022-11-01T22:34:02,689 adding 'sequana/multiqc/config.py' 2022-11-01T22:34:02,692 adding 'sequana/multiqc/coverage.py' 2022-11-01T22:34:02,696 adding 'sequana/multiqc/isoseq.py' 2022-11-01T22:34:02,699 adding 'sequana/multiqc/isoseq_qc.py' 2022-11-01T22:34:02,702 adding 'sequana/multiqc/kraken.py' 2022-11-01T22:34:02,705 adding 'sequana/multiqc/laa.py' 2022-11-01T22:34:02,708 adding 'sequana/multiqc/multiqc_config.yaml' 2022-11-01T22:34:02,711 adding 'sequana/multiqc/pacbio_amplicon.py' 2022-11-01T22:34:02,714 adding 'sequana/multiqc/pacbio_qc.py' 2022-11-01T22:34:02,717 adding 'sequana/multiqc/plots.py' 2022-11-01T22:34:02,719 adding 'sequana/multiqc/quality_control.py' 2022-11-01T22:34:02,722 adding 'sequana/plots/__init__.py' 2022-11-01T22:34:02,725 adding 'sequana/plots/canvasjs_base.py' 2022-11-01T22:34:02,729 adding 'sequana/plots/canvasjs_linegraph.py' 2022-11-01T22:34:02,731 adding 'sequana/resources/__init__.py' 2022-11-01T22:34:02,734 adding 'sequana/resources/canvas/__init__.py' 2022-11-01T22:34:02,736 adding 'sequana/resources/canvas/bar.py' 2022-11-01T22:34:02,739 adding 'sequana/resources/css/__init__.py' 2022-11-01T22:34:02,762 adding 'sequana/resources/css/bootstrap.min.css' 2022-11-01T22:34:02,767 adding 'sequana/resources/css/buttons.dataTables.min.css' 2022-11-01T22:34:02,771 adding 'sequana/resources/css/jquery.dataTables.min.css' 2022-11-01T22:34:02,774 adding 'sequana/resources/css/jquery.dropdown.min.css' 2022-11-01T22:34:02,777 adding 'sequana/resources/css/report.css' 2022-11-01T22:34:02,808 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2022-11-01T22:34:02,841 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2022-11-01T22:34:02,846 adding 'sequana/resources/data/README.rst' 2022-11-01T22:34:02,849 adding 'sequana/resources/data/__init__.py' 2022-11-01T22:34:02,992 adding 'sequana/resources/data/kegg.csv' 2022-11-01T22:34:03,018 adding 'sequana/resources/data/measles.fa' 2022-11-01T22:34:03,022 adding 'sequana/resources/data/panther.csv' 2022-11-01T22:34:03,027 adding 'sequana/resources/data/phiX174.fa' 2022-11-01T22:34:03,173 adding 'sequana/resources/data/virus.bed' 2022-11-01T22:34:03,182 adding 'sequana/resources/doc/__init__.py' 2022-11-01T22:34:03,185 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2022-11-01T22:34:03,187 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2022-11-01T22:34:03,190 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2022-11-01T22:34:03,192 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2022-11-01T22:34:03,195 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2022-11-01T22:34:03,197 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2022-11-01T22:34:03,200 adding 'sequana/resources/examples/README.rst' 2022-11-01T22:34:03,202 adding 'sequana/resources/examples/__init__.py' 2022-11-01T22:34:03,207 adding 'sequana/resources/examples/test.fastq.gz' 2022-11-01T22:34:03,211 adding 'sequana/resources/examples/test_kraken.out' 2022-11-01T22:34:03,223 adding 'sequana/resources/images/Institut_Pasteur.png' 2022-11-01T22:34:03,226 adding 'sequana/resources/images/__init__.py' 2022-11-01T22:34:03,228 adding 'sequana/resources/images/no_data.jpg' 2022-11-01T22:34:03,232 adding 'sequana/resources/images/no_data.png' 2022-11-01T22:34:03,234 adding 'sequana/resources/js/__init__.py' 2022-11-01T22:34:03,244 adding 'sequana/resources/js/bootstrap.min.js' 2022-11-01T22:34:03,250 adding 'sequana/resources/js/buttons.html5.min.js' 2022-11-01T22:34:03,253 adding 'sequana/resources/js/buttons.print.min.js' 2022-11-01T22:34:03,307 adding 'sequana/resources/js/canvasjs.min.js' 2022-11-01T22:34:03,317 adding 'sequana/resources/js/dataTables.buttons.min.js' 2022-11-01T22:34:03,417 adding 'sequana/resources/js/jquery-2.1.1.js' 2022-11-01T22:34:03,451 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2022-11-01T22:34:03,482 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2022-11-01T22:34:03,514 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2022-11-01T22:34:03,544 adding 'sequana/resources/js/jquery.dataTables.min.js' 2022-11-01T22:34:03,548 adding 'sequana/resources/js/jquery.dropdown.min.js' 2022-11-01T22:34:03,550 adding 'sequana/resources/js/jquery.tocPlugin.js' 2022-11-01T22:34:03,555 adding 'sequana/resources/js/papaparse.min.js' 2022-11-01T22:34:03,558 adding 'sequana/resources/snpeff/__init__.py' 2022-11-01T22:34:03,561 adding 'sequana/resources/snpeff/snpEff.config' 2022-11-01T22:34:03,564 adding 'sequana/resources/templates/__init__.py' 2022-11-01T22:34:03,567 adding 'sequana/resources/templates/base.html' 2022-11-01T22:34:03,569 adding 'sequana/resources/templates/joint_calling.html' 2022-11-01T22:34:03,572 adding 'sequana/resources/templates/rnadiff_light_template.R' 2022-11-01T22:34:03,574 adding 'sequana/resources/templates/standard.html' 2022-11-01T22:34:03,578 adding 'sequana/resources/testing/README.rst' 2022-11-01T22:34:03,580 adding 'sequana/resources/testing/__init__.py' 2022-11-01T22:34:03,582 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2022-11-01T22:34:03,600 adding 'sequana/resources/testing/test.fasta' 2022-11-01T22:34:03,631 adding 'sequana/resources/testing/test_blast_ebi.xml' 2022-11-01T22:34:03,642 adding 'sequana/resources/testing/test_blast_local.xml' 2022-11-01T22:34:03,723 adding 'sequana/resources/testing/test_coverage.csv' 2022-11-01T22:34:03,732 adding 'sequana/resources/testing/test_dag.ann.dot' 2022-11-01T22:34:03,734 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2022-11-01T22:34:03,736 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2022-11-01T22:34:03,738 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2022-11-01T22:34:03,741 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2022-11-01T22:34:03,743 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2022-11-01T22:34:03,745 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2022-11-01T22:34:03,747 adding 'sequana/resources/testing/test_index_mapper.csv' 2022-11-01T22:34:03,749 adding 'sequana/resources/testing/test_kraken.out.summary' 2022-11-01T22:34:03,751 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2022-11-01T22:34:04,311 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2022-11-01T22:34:04,327 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2022-11-01T22:34:04,331 adding 'sequana/rules/README.rst' 2022-11-01T22:34:04,333 adding 'sequana/rules/__init__.py' 2022-11-01T22:34:04,336 adding 'sequana/rules/DupRadar/DupRadar.rules' 2022-11-01T22:34:04,339 adding 'sequana/rules/Pacbio/__init__.py' 2022-11-01T22:34:04,343 adding 'sequana/rules/SARTools/SARTools.rules' 2022-11-01T22:34:04,346 adding 'sequana/rules/SnpEff/__init__.py' 2022-11-01T22:34:04,350 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2022-11-01T22:34:04,353 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2022-11-01T22:34:04,357 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2022-11-01T22:34:04,361 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2022-11-01T22:34:04,364 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2022-11-01T22:34:04,367 adding 'sequana/rules/Utils/__init__.py' 2022-11-01T22:34:04,370 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2022-11-01T22:34:04,373 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2022-11-01T22:34:04,376 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2022-11-01T22:34:04,379 adding 'sequana/rules/bowtie2_index/bowtie2_index.rules' 2022-11-01T22:34:04,383 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2022-11-01T22:34:04,386 adding 'sequana/rules/bwa_index/bwa_index.rules' 2022-11-01T22:34:04,389 adding 'sequana/rules/canu/canu.rules' 2022-11-01T22:34:04,392 adding 'sequana/rules/codecs/__init__.py' 2022-11-01T22:34:04,395 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2022-11-01T22:34:04,398 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2022-11-01T22:34:04,401 adding 'sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules' 2022-11-01T22:34:04,405 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2022-11-01T22:34:04,408 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2022-11-01T22:34:04,411 adding 'sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules' 2022-11-01T22:34:04,414 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2022-11-01T22:34:04,417 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2022-11-01T22:34:04,420 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2022-11-01T22:34:04,424 adding 'sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules' 2022-11-01T22:34:04,427 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2022-11-01T22:34:04,430 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2022-11-01T22:34:04,433 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2022-11-01T22:34:04,436 adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' 2022-11-01T22:34:04,440 adding 'sequana/rules/cutadapt/cutadapt.rules' 2022-11-01T22:34:04,443 adding 'sequana/rules/dag/dag.rules' 2022-11-01T22:34:04,446 adding 'sequana/rules/deeptools/__init__.py' 2022-11-01T22:34:04,449 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2022-11-01T22:34:04,453 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2022-11-01T22:34:04,456 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2022-11-01T22:34:04,461 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2022-11-01T22:34:04,464 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2022-11-01T22:34:04,467 adding 'sequana/rules/falco/falco.rules' 2022-11-01T22:34:04,470 adding 'sequana/rules/fastp/fastp.rules' 2022-11-01T22:34:04,474 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2022-11-01T22:34:04,477 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2022-11-01T22:34:04,481 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2022-11-01T22:34:04,484 adding 'sequana/rules/fastqc/fastqc.rules' 2022-11-01T22:34:04,487 adding 'sequana/rules/feature_counts/feature_counts.rules' 2022-11-01T22:34:04,490 adding 'sequana/rules/format_contigs/format_contigs.rules' 2022-11-01T22:34:04,494 adding 'sequana/rules/freebayes/freebayes.rules' 2022-11-01T22:34:04,497 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2022-11-01T22:34:04,501 adding 'sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules' 2022-11-01T22:34:04,503 adding 'sequana/rules/idr/__init__.py' 2022-11-01T22:34:04,507 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2022-11-01T22:34:04,510 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2022-11-01T22:34:04,514 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2022-11-01T22:34:04,518 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2022-11-01T22:34:04,521 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2022-11-01T22:34:04,525 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2022-11-01T22:34:04,528 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2022-11-01T22:34:04,531 adding 'sequana/rules/igvtools/igvtools.rules' 2022-11-01T22:34:04,535 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2022-11-01T22:34:04,538 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2022-11-01T22:34:04,542 adding 'sequana/rules/kraken/1.0/kraken.rules' 2022-11-01T22:34:04,546 adding 'sequana/rules/kraken/1.1/kraken.rules' 2022-11-01T22:34:04,550 adding 'sequana/rules/kraken/2.0/kraken.rules' 2022-11-01T22:34:04,553 adding 'sequana/rules/mapping_analysis/mapping_analysis.rules' 2022-11-01T22:34:04,556 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2022-11-01T22:34:04,560 adding 'sequana/rules/multiqc/multiqc.rules' 2022-11-01T22:34:04,563 adding 'sequana/rules/multiqc/2.0/multiqc.rules' 2022-11-01T22:34:04,567 adding 'sequana/rules/multiqc2/multiqc2.rules' 2022-11-01T22:34:04,570 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2022-11-01T22:34:04,573 adding 'sequana/rules/picard-tools/__init__.py' 2022-11-01T22:34:04,577 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2022-11-01T22:34:04,580 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2022-11-01T22:34:04,583 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2022-11-01T22:34:04,586 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2022-11-01T22:34:04,589 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2022-11-01T22:34:04,593 adding 'sequana/rules/preSARTools/preSARTools.rules' 2022-11-01T22:34:04,596 adding 'sequana/rules/prokka/prokka.rules' 2022-11-01T22:34:04,600 adding 'sequana/rules/quast/quast.rules' 2022-11-01T22:34:04,603 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2022-11-01T22:34:04,607 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2022-11-01T22:34:04,610 adding 'sequana/rules/rulegraph/rulegraph.rules' 2022-11-01T22:34:04,613 adding 'sequana/rules/salmon_index/salmon_index.rules' 2022-11-01T22:34:04,617 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2022-11-01T22:34:04,620 adding 'sequana/rules/sambamba/__init__.py' 2022-11-01T22:34:04,623 adding 'sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules' 2022-11-01T22:34:04,627 adding 'sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules' 2022-11-01T22:34:04,630 adding 'sequana/rules/samtools_depth/samtools_depth.rules' 2022-11-01T22:34:04,633 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2022-11-01T22:34:04,637 adding 'sequana/rules/sequana_coverage/sequana_coverage.rules' 2022-11-01T22:34:04,640 adding 'sequana/rules/spades/spades.rules' 2022-11-01T22:34:04,643 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2022-11-01T22:34:04,647 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2022-11-01T22:34:04,650 adding 'sequana/rules/spp/spp.rules' 2022-11-01T22:34:04,653 adding 'sequana/rules/star_index/star_index.rules' 2022-11-01T22:34:04,657 adding 'sequana/rules/star_mapping/star_mapping.rules' 2022-11-01T22:34:04,661 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2022-11-01T22:34:04,664 adding 'sequana/rules/tophat_mapping/tophat_mapping.rules' 2022-11-01T22:34:04,667 adding 'sequana/scripts/__init__.py' 2022-11-01T22:34:04,673 adding 'sequana/scripts/coverage.py' 2022-11-01T22:34:04,676 adding 'sequana/scripts/start_pipeline.py' 2022-11-01T22:34:04,680 adding 'sequana/scripts/substractor.py' 2022-11-01T22:34:04,684 adding 'sequana/scripts/taxonomy.py' 2022-11-01T22:34:04,687 adding 'sequana/scripts/main/__init__.py' 2022-11-01T22:34:04,690 adding 'sequana/scripts/main/biomart.py' 2022-11-01T22:34:04,694 adding 'sequana/scripts/main/enrichment_kegg.py' 2022-11-01T22:34:04,697 adding 'sequana/scripts/main/enrichment_panther.py' 2022-11-01T22:34:04,701 adding 'sequana/scripts/main/enrichment_uniprot.py' 2022-11-01T22:34:04,704 adding 'sequana/scripts/main/fasta.py' 2022-11-01T22:34:04,707 adding 'sequana/scripts/main/fastq.py' 2022-11-01T22:34:04,710 adding 'sequana/scripts/main/feature_count.py' 2022-11-01T22:34:04,712 adding 'sequana/scripts/main/gff_to_gtf.py' 2022-11-01T22:34:04,715 adding 'sequana/scripts/main/gff_to_light_gff.py' 2022-11-01T22:34:04,718 adding 'sequana/scripts/main/gtf_fixer.py' 2022-11-01T22:34:04,722 adding 'sequana/scripts/main/lane_merging.py' 2022-11-01T22:34:04,724 adding 'sequana/scripts/main/main.py' 2022-11-01T22:34:04,728 adding 'sequana/scripts/main/mapping.py' 2022-11-01T22:34:04,730 adding 'sequana/scripts/main/ribodesigner.py' 2022-11-01T22:34:04,735 adding 'sequana/scripts/main/rnadiff.py' 2022-11-01T22:34:04,738 adding 'sequana/scripts/main/rnaseq_compare.py' 2022-11-01T22:34:04,741 adding 'sequana/scripts/main/salmon.py' 2022-11-01T22:34:04,744 adding 'sequana/scripts/main/samplesheet.py' 2022-11-01T22:34:04,747 adding 'sequana/scripts/main/summary.py' 2022-11-01T22:34:04,750 adding 'sequana/scripts/main/taxonomy.py' 2022-11-01T22:34:04,752 adding 'sequana/scripts/main/utils.py' 2022-11-01T22:34:04,755 adding 'sequana/utils/__init__.py' 2022-11-01T22:34:04,758 adding 'sequana/utils/config.py' 2022-11-01T22:34:04,763 adding 'sequana/utils/datatables_js.py' 2022-11-01T22:34:04,766 adding 'sequana/utils/df2html.py' 2022-11-01T22:34:04,768 adding 'sequana/utils/singleton.py' 2022-11-01T22:34:04,771 adding 'sequana/utils/tree.py' 2022-11-01T22:34:04,774 adding 'sequana/viz/__init__.py' 2022-11-01T22:34:04,777 adding 'sequana/viz/anova.py' 2022-11-01T22:34:04,780 adding 'sequana/viz/boxplot.py' 2022-11-01T22:34:04,783 adding 'sequana/viz/clusterisation.py' 2022-11-01T22:34:04,786 adding 'sequana/viz/core.py' 2022-11-01T22:34:04,792 adding 'sequana/viz/corrplot.py' 2022-11-01T22:34:04,796 adding 'sequana/viz/dendogram.py' 2022-11-01T22:34:04,802 adding 'sequana/viz/heatmap.py' 2022-11-01T22:34:04,805 adding 'sequana/viz/hinton.py' 2022-11-01T22:34:04,808 adding 'sequana/viz/hist2d.py' 2022-11-01T22:34:04,811 adding 'sequana/viz/imshow.py' 2022-11-01T22:34:04,814 adding 'sequana/viz/isomap.py' 2022-11-01T22:34:04,817 adding 'sequana/viz/linkage.py' 2022-11-01T22:34:04,820 adding 'sequana/viz/mds.py' 2022-11-01T22:34:04,823 adding 'sequana/viz/pca.py' 2022-11-01T22:34:04,827 adding 'sequana/viz/scatter.py' 2022-11-01T22:34:04,830 adding 'sequana/viz/venn.py' 2022-11-01T22:34:04,833 adding 'sequana/viz/volcano.py' 2022-11-01T22:34:04,838 adding 'sequana-0.14.4.dist-info/LICENSE' 2022-11-01T22:34:04,842 adding 'sequana-0.14.4.dist-info/METADATA' 2022-11-01T22:34:04,844 adding 'sequana-0.14.4.dist-info/WHEEL' 2022-11-01T22:34:04,845 adding 'sequana-0.14.4.dist-info/entry_points.txt' 2022-11-01T22:34:04,847 adding 'sequana-0.14.4.dist-info/top_level.txt' 2022-11-01T22:34:04,856 adding 'sequana-0.14.4.dist-info/RECORD' 2022-11-01T22:34:04,932 removing build/bdist.linux-armv7l/wheel 2022-11-01T22:34:05,426 Building wheel for sequana (setup.py): finished with status 'done' 2022-11-01T22:34:05,483 Created wheel for sequana: filename=sequana-0.14.4-py3-none-any.whl size=1687649 sha256=bae35993a96119dfaa53882cd7b2e58217af54247efe50e55da042393f694792 2022-11-01T22:34:05,485 Stored in directory: /tmp/pip-ephem-wheel-cache-6rkeoo24/wheels/85/ed/8a/c362d77a69d05c9636141ac7ec764231da005e9fa1f5c3628c 2022-11-01T22:34:05,544 Successfully built sequana 2022-11-01T22:34:05,680 Removed build tracker: '/tmp/pip-build-tracker-1wkjpcn9'