2022-11-03T10:36:07,665 Created temporary directory: /tmp/pip-ephem-wheel-cache-say__z9r 2022-11-03T10:36:07,670 Created temporary directory: /tmp/pip-build-tracker-d6wuc3e1 2022-11-03T10:36:07,670 Initialized build tracking at /tmp/pip-build-tracker-d6wuc3e1 2022-11-03T10:36:07,671 Created build tracker: /tmp/pip-build-tracker-d6wuc3e1 2022-11-03T10:36:07,671 Entered build tracker: /tmp/pip-build-tracker-d6wuc3e1 2022-11-03T10:36:07,672 Created temporary directory: /tmp/pip-wheel-bbpfuy7c 2022-11-03T10:36:07,680 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-03T10:36:07,685 Created temporary directory: /tmp/pip-ephem-wheel-cache-olhjjzjl 2022-11-03T10:36:07,736 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-03T10:36:07,743 2 location(s) to search for versions of sigprofilerassignment: 2022-11-03T10:36:07,743 * https://pypi.org/simple/sigprofilerassignment/ 2022-11-03T10:36:07,743 * https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-03T10:36:07,744 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2022-11-03T10:36:07,745 Getting page https://pypi.org/simple/sigprofilerassignment/ 2022-11-03T10:36:07,749 Found index url https://pypi.org/simple 2022-11-03T10:36:07,979 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2022-11-03T10:36:07,997 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:07,998 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2022-11-03T10:36:07,999 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:07,999 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2022-11-03T10:36:08,000 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,001 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2022-11-03T10:36:08,001 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,002 Found link https://files.pythonhosted.org/packages/79/c4/ed14da5d80f43e136c7638db1341dda950f510b9e283f3233a8aa7aabf32/SigProfilerAssignment-0.0.5.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.5 2022-11-03T10:36:08,003 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/66/ab/85f6ffb88701a726aa49666e007b52dbd3de21f036a6b8c2ebdeb9f1e462/SigProfilerAssignment-0.0.6-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,003 Found link https://files.pythonhosted.org/packages/03/d8/b24045855eff43a91cf7756c96f110b790d103bd1df87f05c0986da04d0b/SigProfilerAssignment-0.0.6.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.6 2022-11-03T10:36:08,004 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/7c/81/57fe9bf47f15fb98781753a9cd3b3614f09d5c53e359bde0b62d8ecc25eb/SigProfilerAssignment-0.0.7-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,004 Found link https://files.pythonhosted.org/packages/50/e5/0606e29d66a591712f8e43b9d2550f9d3c8a7c23b2720149f80424219418/SigProfilerAssignment-0.0.7.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.7 2022-11-03T10:36:08,005 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/b5/e6/bf7281f0f954a6108054031ca43038d77c11074c97615710dfe0d6153edb/SigProfilerAssignment-0.0.8-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,006 Found link https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.8 2022-11-03T10:36:08,006 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/8d/ce/b3007d83ebaad0c5f16d68fc825dcce815d70081f135a950caf8b6a21972/SigProfilerAssignment-0.0.9-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,007 Found link https://files.pythonhosted.org/packages/5e/3a/5f620dd06f38b080d13d9c07487b1f927908e895c6d0078fd31e1774d819/SigProfilerAssignment-0.0.9.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.9 2022-11-03T10:36:08,007 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/37/7a/96090afea439df630b92520cef7d519d8acda4727d2d36f54cd4e8f734b6/SigProfilerAssignment-0.0.10-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,008 Found link https://files.pythonhosted.org/packages/ef/e2/fb950814a244e3783cd12bba4337ead95882b7adbf8b6100faae9281d8e8/SigProfilerAssignment-0.0.10.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.10 2022-11-03T10:36:08,009 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/98/65/b438b8c59fd28a2b6fe3a8650439d5e4dd12c376f0edddf22f20552920e5/SigProfilerAssignment-0.0.11-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,009 Found link https://files.pythonhosted.org/packages/ad/66/15131e6cc8d00269785242b03348f6b514425db74595f95906dad17abd9c/SigProfilerAssignment-0.0.11.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.11 2022-11-03T10:36:08,010 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5d/97/1b9875b256bc8e72bf1d7ba5025d6fcef5ba852f8332249d7f1c2ca4cdbb/SigProfilerAssignment-0.0.12-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,011 Found link https://files.pythonhosted.org/packages/28/37/2ec84d1c1ad80c2a61214e735ae775d41a35ef5af4c79fbfc1a304003819/SigProfilerAssignment-0.0.12.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.12 2022-11-03T10:36:08,011 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/7a/8e/e93001206882013104acbe9fbc9ee58b4422d73e080574da3e317e6c48d4/SigProfilerAssignment-0.0.13-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,012 Found link https://files.pythonhosted.org/packages/79/4b/37b6494cb0837d58bed9f7fc4b41aede34738e6dacd0b704d04d621d99cb/SigProfilerAssignment-0.0.13.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.13 2022-11-03T10:36:08,013 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/25/4d/81722d3aa1c6de8c9cba482989721c821f1d53f2d113ad54eb18c571cf03/SigProfilerAssignment-0.0.14-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,013 Found link https://files.pythonhosted.org/packages/7d/14/76a03a916457f58fc7af023152a5ebab12e9c5c196e7a431a8dff5fd5713/SigProfilerAssignment-0.0.14.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.14 2022-11-03T10:36:08,014 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/58/11/55f11d7b91ceed9ef2f195917f4d6523936f2cc801b9acc87022e1c53a3c/SigProfilerAssignment-0.0.15-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,014 Found link https://files.pythonhosted.org/packages/2b/ab/ef0c797d615a159f3ea2a2430b47f4479b598f0f93b25b5d23e05462c9ba/SigProfilerAssignment-0.0.15.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.15 2022-11-03T10:36:08,015 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d8/27/852104d5cca8ece5586c5bbccd402376b51d1255460eb67540ae51a234d0/SigProfilerAssignment-0.0.16-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,015 Found link https://files.pythonhosted.org/packages/09/cf/960349c3a4e334416759693bdf0fbe9e03671da4866c0cb51cd83e70e887/SigProfilerAssignment-0.0.16.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.16 2022-11-03T10:36:08,016 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/a5/03/4c78706258493def8af88439f110859e6cdc31a35c004ac3dcc993bb812d/SigProfilerAssignment-0.0.17-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,017 Found link https://files.pythonhosted.org/packages/01/95/3c7b1893786851e46e67efd092c7f6312c935cfae567f3c326e7408821c9/SigProfilerAssignment-0.0.17.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.17 2022-11-03T10:36:08,017 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/73/c586f0e9b2bb41a67c64605f214499ca755929f4bf4092d11a28cd2982b7/SigProfilerAssignment-0.0.18-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,018 Found link https://files.pythonhosted.org/packages/30/76/b2ac20625c7d23ebf959681df3436174a0b61be964d8c74829c42ab1b88f/SigProfilerAssignment-0.0.18.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.18 2022-11-03T10:36:08,019 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-03T10:36:08,020 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-03T10:36:08,022 Found index url https://www.piwheels.org/simple 2022-11-03T10:36:08,268 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2022-11-03T10:36:08,281 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.17-py3-none-any.whl#sha256=304ecece34990333225e464b03ac343c85c0438841eec003a5c97261ce36ce2e (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,282 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.16-py3-none-any.whl#sha256=fe88a9d347f7bbfe244efda9de782c675720189ebcc163479e6879a25631e8a1 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,282 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.15-py3-none-any.whl#sha256=64d632a0d656da7ac327b63d005473ee9287d85ae6e01dd419693484569636cb (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,283 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.14-py3-none-any.whl#sha256=a42cc5a6164208e98344e1d919eabcff6f136ea14ea66ff1c694a17f58cd5f0c (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,284 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.13-py3-none-any.whl#sha256=9b0b469c0836a9f1252be3af5527d478eecbf7dbcb1ec2bd5e4eb9339db8bc81 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,284 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.12-py3-none-any.whl#sha256=45b7b470b0381278049e3f6e11c6cb5ce936d452aafe609804cb7be32aec2d70 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,285 Skipping link: No binaries permitted for sigprofilerassignment: 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https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.8-py3-none-any.whl#sha256=3f5230a1c23cb6df61406f2401c9d4fea5d655bb7f5799b37bb02288aab2e6d5 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,287 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.7-py3-none-any.whl#sha256=6db83fcf7669f563330e9c8b69ef89320b6bee775bb5b7c13f6fa480b75c6c6e (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,287 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.6-py3-none-any.whl#sha256=3c24df444dbc2dca805d2ad2027411960b6c5d16edef5752b8cce431600f7bd4 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,288 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.5-py3-none-any.whl#sha256=8dcda60a710617760d56dff2ae80b5a534397648f276af1399674bad57c9fb12 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,289 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.4-py3-none-any.whl#sha256=dfd3c27005fbbcd5ec1c7991f5b1e8904b2ce17d5bdd55291c2ea9132a6eadbe (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,289 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,290 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-03T10:36:08,290 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-03T10:36:08,291 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2022-11-03T10:36:08,333 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2022-11-03T10:36:08,363 Collecting sigprofilerassignment==0.0.18 2022-11-03T10:36:08,367 Created temporary directory: /tmp/pip-unpack-smuoix8o 2022-11-03T10:36:08,752 Downloading SigProfilerAssignment-0.0.18.tar.gz (4.6 MB) 2022-11-03T10:36:11,730 Added sigprofilerassignment==0.0.18 from https://files.pythonhosted.org/packages/30/76/b2ac20625c7d23ebf959681df3436174a0b61be964d8c74829c42ab1b88f/SigProfilerAssignment-0.0.18.tar.gz to build tracker '/tmp/pip-build-tracker-d6wuc3e1' 2022-11-03T10:36:11,732 Running setup.py (path:/tmp/pip-wheel-bbpfuy7c/sigprofilerassignment_582753db1dba422991df3f3844cab8fb/setup.py) egg_info for package sigprofilerassignment 2022-11-03T10:36:11,734 Created temporary directory: /tmp/pip-pip-egg-info-ziwp906f 2022-11-03T10:36:11,734 Preparing metadata (setup.py): started 2022-11-03T10:36:11,736 Running command python setup.py egg_info 2022-11-03T10:36:14,143 running egg_info 2022-11-03T10:36:14,148 creating /tmp/pip-pip-egg-info-ziwp906f/SigProfilerAssignment.egg-info 2022-11-03T10:36:14,201 writing /tmp/pip-pip-egg-info-ziwp906f/SigProfilerAssignment.egg-info/PKG-INFO 2022-11-03T10:36:14,207 writing dependency_links to /tmp/pip-pip-egg-info-ziwp906f/SigProfilerAssignment.egg-info/dependency_links.txt 2022-11-03T10:36:14,212 writing requirements to /tmp/pip-pip-egg-info-ziwp906f/SigProfilerAssignment.egg-info/requires.txt 2022-11-03T10:36:14,214 writing top-level names to /tmp/pip-pip-egg-info-ziwp906f/SigProfilerAssignment.egg-info/top_level.txt 2022-11-03T10:36:14,216 writing manifest file '/tmp/pip-pip-egg-info-ziwp906f/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-03T10:36:14,385 reading manifest file '/tmp/pip-pip-egg-info-ziwp906f/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-03T10:36:14,388 reading manifest template 'MANIFEST.in' 2022-11-03T10:36:14,393 warning: no files found matching 'SigProfilerAssignment/data/vcftest/*' 2022-11-03T10:36:14,419 adding license file 'LICENSE.txt' 2022-11-03T10:36:14,438 writing manifest file '/tmp/pip-pip-egg-info-ziwp906f/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-03T10:36:14,645 Preparing metadata (setup.py): finished with status 'done' 2022-11-03T10:36:14,659 Source in /tmp/pip-wheel-bbpfuy7c/sigprofilerassignment_582753db1dba422991df3f3844cab8fb has version 0.0.18, which satisfies requirement sigprofilerassignment==0.0.18 from https://files.pythonhosted.org/packages/30/76/b2ac20625c7d23ebf959681df3436174a0b61be964d8c74829c42ab1b88f/SigProfilerAssignment-0.0.18.tar.gz 2022-11-03T10:36:14,661 Removed sigprofilerassignment==0.0.18 from https://files.pythonhosted.org/packages/30/76/b2ac20625c7d23ebf959681df3436174a0b61be964d8c74829c42ab1b88f/SigProfilerAssignment-0.0.18.tar.gz from build tracker '/tmp/pip-build-tracker-d6wuc3e1' 2022-11-03T10:36:14,673 Created temporary directory: /tmp/pip-unpack-7y7z634b 2022-11-03T10:36:14,675 Building wheels for collected packages: sigprofilerassignment 2022-11-03T10:36:14,684 Created temporary directory: /tmp/pip-wheel-awcso9ol 2022-11-03T10:36:14,685 Building wheel for sigprofilerassignment (setup.py): started 2022-11-03T10:36:14,686 Destination directory: /tmp/pip-wheel-awcso9ol 2022-11-03T10:36:14,687 Running command python setup.py bdist_wheel 2022-11-03T10:36:17,156 running bdist_wheel 2022-11-03T10:36:17,858 running build 2022-11-03T10:36:17,859 running build_py 2022-11-03T10:36:17,921 creating build 2022-11-03T10:36:17,922 creating build/lib 2022-11-03T10:36:17,923 creating build/lib/SigProfilerAssignment 2022-11-03T10:36:17,925 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2022-11-03T10:36:17,929 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2022-11-03T10:36:17,933 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2022-11-03T10:36:17,942 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2022-11-03T10:36:17,948 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2022-11-03T10:36:17,952 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2022-11-03T10:36:17,955 running egg_info 2022-11-03T10:36:18,086 writing SigProfilerAssignment.egg-info/PKG-INFO 2022-11-03T10:36:18,090 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2022-11-03T10:36:18,094 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2022-11-03T10:36:18,096 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2022-11-03T10:36:18,155 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-03T10:36:18,170 reading manifest template 'MANIFEST.in' 2022-11-03T10:36:18,174 warning: no files found matching 'SigProfilerAssignment/data/vcftest/*' 2022-11-03T10:36:18,194 adding license file 'LICENSE.txt' 2022-11-03T10:36:18,220 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-03T10:36:18,226 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,226 !! 2022-11-03T10:36:18,227 ############################ 2022-11-03T10:36:18,227 # Package would be ignored # 2022-11-03T10:36:18,228 ############################ 2022-11-03T10:36:18,228 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package, 2022-11-03T10:36:18,228 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,229 'SigProfilerAssignment.DecompositionPlots' has been automatically added to the distribution only 2022-11-03T10:36:18,229 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,230 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,230 Please make sure that 'SigProfilerAssignment.DecompositionPlots' is included as a package by using 2022-11-03T10:36:18,231 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,231 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,231 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,232 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,232 documentation page. 2022-11-03T10:36:18,233 !! 2022-11-03T10:36:18,234 check.warn(importable) 2022-11-03T10:36:18,234 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.reference_files' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,234 !! 2022-11-03T10:36:18,235 ############################ 2022-11-03T10:36:18,235 # Package would be ignored # 2022-11-03T10:36:18,236 ############################ 2022-11-03T10:36:18,236 Python recognizes 'SigProfilerAssignment.DecompositionPlots.reference_files' as an importable package, 2022-11-03T10:36:18,236 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,237 'SigProfilerAssignment.DecompositionPlots.reference_files' has been automatically added to the distribution only 2022-11-03T10:36:18,237 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,237 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,238 Please make sure that 'SigProfilerAssignment.DecompositionPlots.reference_files' is included as a package by using 2022-11-03T10:36:18,238 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,239 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,239 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,240 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,240 documentation page. 2022-11-03T10:36:18,241 !! 2022-11-03T10:36:18,241 check.warn(importable) 2022-11-03T10:36:18,242 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.reference_files.Fonts' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,242 !! 2022-11-03T10:36:18,243 ############################ 2022-11-03T10:36:18,243 # Package would be ignored # 2022-11-03T10:36:18,243 ############################ 2022-11-03T10:36:18,244 Python recognizes 'SigProfilerAssignment.DecompositionPlots.reference_files.Fonts' as an importable package, 2022-11-03T10:36:18,244 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,244 'SigProfilerAssignment.DecompositionPlots.reference_files.Fonts' has been automatically added to the distribution only 2022-11-03T10:36:18,245 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,245 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,246 Please make sure that 'SigProfilerAssignment.DecompositionPlots.reference_files.Fonts' is included as a package by using 2022-11-03T10:36:18,246 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,246 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,247 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,247 documentation page. 2022-11-03T10:36:18,248 !! 2022-11-03T10:36:18,249 check.warn(importable) 2022-11-03T10:36:18,249 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,249 !! 2022-11-03T10:36:18,250 ############################ 2022-11-03T10:36:18,251 # Package would be ignored # 2022-11-03T10:36:18,251 ############################ 2022-11-03T10:36:18,251 Python recognizes 'SigProfilerAssignment.data' as an importable package, 2022-11-03T10:36:18,251 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,252 'SigProfilerAssignment.data' has been automatically added to the distribution only 2022-11-03T10:36:18,252 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,253 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,253 Please make sure that 'SigProfilerAssignment.data' is included as a package by using 2022-11-03T10:36:18,253 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,254 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,254 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,255 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,255 documentation page. 2022-11-03T10:36:18,256 !! 2022-11-03T10:36:18,256 check.warn(importable) 2022-11-03T10:36:18,257 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,257 !! 2022-11-03T10:36:18,258 ############################ 2022-11-03T10:36:18,258 # Package would be ignored # 2022-11-03T10:36:18,258 ############################ 2022-11-03T10:36:18,259 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package, 2022-11-03T10:36:18,259 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,259 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' has been automatically added to the distribution only 2022-11-03T10:36:18,260 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,260 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,261 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is included as a package by using 2022-11-03T10:36:18,261 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,261 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,262 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,262 documentation page. 2022-11-03T10:36:18,263 !! 2022-11-03T10:36:18,264 check.warn(importable) 2022-11-03T10:36:18,264 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,264 !! 2022-11-03T10:36:18,265 ############################ 2022-11-03T10:36:18,266 # Package would be ignored # 2022-11-03T10:36:18,266 ############################ 2022-11-03T10:36:18,266 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package, 2022-11-03T10:36:18,266 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,267 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' has been automatically added to the distribution only 2022-11-03T10:36:18,267 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,268 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,268 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is included as a package by using 2022-11-03T10:36:18,269 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,269 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,269 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,270 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,270 documentation page. 2022-11-03T10:36:18,271 !! 2022-11-03T10:36:18,271 check.warn(importable) 2022-11-03T10:36:18,272 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm10' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,272 !! 2022-11-03T10:36:18,273 ############################ 2022-11-03T10:36:18,273 # Package would be ignored # 2022-11-03T10:36:18,273 ############################ 2022-11-03T10:36:18,274 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package, 2022-11-03T10:36:18,274 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,275 'SigProfilerAssignment.data.Reference_Signatures.mm10' has been automatically added to the distribution only 2022-11-03T10:36:18,275 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,275 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,276 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is included as a package by using 2022-11-03T10:36:18,276 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,276 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,277 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,277 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,277 documentation page. 2022-11-03T10:36:18,278 !! 2022-11-03T10:36:18,279 check.warn(importable) 2022-11-03T10:36:18,279 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm9' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,279 !! 2022-11-03T10:36:18,280 ############################ 2022-11-03T10:36:18,281 # Package would be ignored # 2022-11-03T10:36:18,281 ############################ 2022-11-03T10:36:18,281 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package, 2022-11-03T10:36:18,281 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,282 'SigProfilerAssignment.data.Reference_Signatures.mm9' has been automatically added to the distribution only 2022-11-03T10:36:18,282 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,283 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,283 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is included as a package by using 2022-11-03T10:36:18,283 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,284 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,284 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,284 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,285 documentation page. 2022-11-03T10:36:18,286 !! 2022-11-03T10:36:18,286 check.warn(importable) 2022-11-03T10:36:18,286 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.rn6' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,287 !! 2022-11-03T10:36:18,288 ############################ 2022-11-03T10:36:18,288 # Package would be ignored # 2022-11-03T10:36:18,288 ############################ 2022-11-03T10:36:18,289 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package, 2022-11-03T10:36:18,289 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,290 'SigProfilerAssignment.data.Reference_Signatures.rn6' has been automatically added to the distribution only 2022-11-03T10:36:18,291 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,291 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,292 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is included as a package by using 2022-11-03T10:36:18,294 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,295 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,296 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,296 documentation page. 2022-11-03T10:36:18,297 !! 2022-11-03T10:36:18,299 check.warn(importable) 2022-11-03T10:36:18,299 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.cnv_input' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,300 !! 2022-11-03T10:36:18,301 ############################ 2022-11-03T10:36:18,301 # Package would be ignored # 2022-11-03T10:36:18,301 ############################ 2022-11-03T10:36:18,302 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package, 2022-11-03T10:36:18,302 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,303 'SigProfilerAssignment.data.tests.cnv_input' has been automatically added to the distribution only 2022-11-03T10:36:18,303 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,303 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,304 Please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is included as a package by using 2022-11-03T10:36:18,304 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,305 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,305 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,306 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,306 documentation page. 2022-11-03T10:36:18,307 !! 2022-11-03T10:36:18,308 check.warn(importable) 2022-11-03T10:36:18,308 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.txt_input' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,308 !! 2022-11-03T10:36:18,310 ############################ 2022-11-03T10:36:18,310 # Package would be ignored # 2022-11-03T10:36:18,310 ############################ 2022-11-03T10:36:18,311 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package, 2022-11-03T10:36:18,311 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,311 'SigProfilerAssignment.data.tests.txt_input' has been automatically added to the distribution only 2022-11-03T10:36:18,312 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,312 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,313 Please make sure that 'SigProfilerAssignment.data.tests.txt_input' is included as a package by using 2022-11-03T10:36:18,313 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,313 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,314 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,314 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,315 documentation page. 2022-11-03T10:36:18,316 !! 2022-11-03T10:36:18,316 check.warn(importable) 2022-11-03T10:36:18,317 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.vcf_input' as data is deprecated, please list it in `packages`. 2022-11-03T10:36:18,317 !! 2022-11-03T10:36:18,318 ############################ 2022-11-03T10:36:18,318 # Package would be ignored # 2022-11-03T10:36:18,319 ############################ 2022-11-03T10:36:18,319 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package, 2022-11-03T10:36:18,319 but it is not listed in the `packages` configuration of setuptools. 2022-11-03T10:36:18,320 'SigProfilerAssignment.data.tests.vcf_input' has been automatically added to the distribution only 2022-11-03T10:36:18,320 because it may contain data files, but this behavior is likely to change 2022-11-03T10:36:18,321 in future versions of setuptools (and therefore is considered deprecated). 2022-11-03T10:36:18,321 Please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is included as a package by using 2022-11-03T10:36:18,322 the `packages` configuration field or the proper discovery methods 2022-11-03T10:36:18,322 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-03T10:36:18,322 instead of `find_packages(...)`/`find:`). 2022-11-03T10:36:18,323 You can read more about "package discovery" and "data files" on setuptools 2022-11-03T10:36:18,323 documentation page. 2022-11-03T10:36:18,324 !! 2022-11-03T10:36:18,325 check.warn(importable) 2022-11-03T10:36:18,325 creating build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:18,325 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:18,326 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:18,326 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:18,326 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:18,327 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:18,327 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:18,327 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:18,328 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:18,341 creating build/lib/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-03T10:36:18,342 copying SigProfilerAssignment/DecompositionPlots/reference_files/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-03T10:36:18,347 copying SigProfilerAssignment/DecompositionPlots/reference_files/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-03T10:36:18,351 creating build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts 2022-11-03T10:36:18,352 copying SigProfilerAssignment/DecompositionPlots/reference_files/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts 2022-11-03T10:36:18,394 creating build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,395 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,399 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,403 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,407 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,411 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,422 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,447 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,451 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,455 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,459 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,465 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2022-11-03T10:36:18,472 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2022-11-03T10:36:18,473 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,476 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,482 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,488 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,495 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,503 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,508 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,514 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,520 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,533 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,544 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,549 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,555 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,560 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,570 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,582 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,593 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,599 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,606 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,611 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,617 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,629 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,641 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,647 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,654 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,660 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,672 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:18,685 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,687 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,694 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,701 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,708 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,719 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,725 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,731 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,742 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,755 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,761 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,767 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,780 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,792 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,798 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,804 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,818 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,830 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,836 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,842 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,853 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:18,864 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,866 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,872 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,879 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,886 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,892 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,897 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,902 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,914 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,924 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,929 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,934 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,947 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,960 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,965 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,971 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:18,987 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:19,002 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:19,007 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:19,012 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:19,023 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:19,035 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,037 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,044 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,050 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,058 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,066 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,071 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,077 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,091 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,103 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,107 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,112 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,124 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,136 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,141 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,146 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,159 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,173 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,178 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,184 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,195 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:19,205 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,207 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,214 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,220 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,228 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,236 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,241 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,246 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,260 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,273 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,278 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,284 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,296 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,310 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,315 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,321 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,334 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,348 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,354 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,360 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,370 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:19,383 creating build/lib/SigProfilerAssignment/data/tests 2022-11-03T10:36:19,383 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2022-11-03T10:36:19,385 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2022-11-03T10:36:19,410 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2022-11-03T10:36:19,412 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-11-03T10:36:19,416 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-11-03T10:36:19,420 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:19,422 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:19,428 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:19,440 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:19,452 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:19,469 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:19,548 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-03T10:36:19,549 setuptools.SetuptoolsDeprecationWarning, 2022-11-03T10:36:19,650 installing to build/bdist.linux-armv7l/wheel 2022-11-03T10:36:19,651 running install 2022-11-03T10:36:19,714 running install_lib 2022-11-03T10:36:19,772 creating build/bdist.linux-armv7l 2022-11-03T10:36:19,773 creating build/bdist.linux-armv7l/wheel 2022-11-03T10:36:19,776 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-03T10:36:19,779 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-03T10:36:19,784 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:19,786 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:19,791 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:19,794 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:19,799 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:19,822 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:19,827 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:19,831 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:19,843 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2022-11-03T10:36:19,847 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,850 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,856 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,868 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,873 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,877 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,881 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,886 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,896 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,906 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,912 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,918 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,923 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,927 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,939 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,943 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,947 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,960 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,970 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,981 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,986 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,993 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:19,997 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:20,003 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:20,008 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:20,022 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:20,033 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-03T10:36:20,040 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,042 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,054 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,058 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,064 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,070 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,076 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,081 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,088 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,101 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,106 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,111 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,122 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,126 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,144 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,158 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,163 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,174 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,179 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,190 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,203 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-03T10:36:20,210 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,212 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,218 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,230 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,243 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,254 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,264 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,269 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,274 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,279 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,284 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,289 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,295 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,301 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,313 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,320 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,333 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,345 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,359 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,364 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,369 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-03T10:36:20,377 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,378 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,390 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,394 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,399 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,404 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,415 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,425 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,430 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,435 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,441 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,446 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,453 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,458 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,474 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,482 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,493 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,505 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,516 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,521 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,526 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-03T10:36:20,542 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,544 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,549 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,554 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,567 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,573 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,585 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,595 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,601 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,608 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,615 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,629 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,641 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,646 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,658 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,664 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,669 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,674 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,686 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,692 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,706 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-03T10:36:20,712 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:20,715 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:20,723 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:20,727 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2022-11-03T10:36:20,730 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2022-11-03T10:36:20,731 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2022-11-03T10:36:20,757 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-11-03T10:36:20,759 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-11-03T10:36:20,762 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-11-03T10:36:20,767 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:20,769 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:20,781 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:20,793 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:20,810 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:20,821 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-03T10:36:20,827 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-03T10:36:20,830 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-03T10:36:20,833 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-03T10:36:20,840 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-03T10:36:20,846 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-03T10:36:20,852 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:20,853 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:20,858 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:20,863 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:20,867 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:20,872 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:20,877 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:20,881 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:20,893 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-03T10:36:20,894 copying build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-03T10:36:20,900 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts 2022-11-03T10:36:20,902 copying build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts 2022-11-03T10:36:20,947 copying build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-03T10:36:20,950 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-03T10:36:20,955 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-03T10:36:20,958 running install_egg_info 2022-11-03T10:36:21,025 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.18-py3.7.egg-info 2022-11-03T10:36:21,050 running install_scripts 2022-11-03T10:36:21,230 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-11-03T10:36:21,239 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.18.dist-info/WHEEL 2022-11-03T10:36:21,243 creating '/tmp/pip-wheel-awcso9ol/SigProfilerAssignment-0.0.18-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-03T10:36:21,248 adding 'SigProfilerAssignment/Analyzer.py' 2022-11-03T10:36:21,250 adding 'SigProfilerAssignment/__init__.py' 2022-11-03T10:36:21,262 adding 'SigProfilerAssignment/decompose_subroutines.py' 2022-11-03T10:36:21,268 adding 'SigProfilerAssignment/decomposition.py' 2022-11-03T10:36:21,277 adding 'SigProfilerAssignment/single_sample.py' 2022-11-03T10:36:21,280 adding 'SigProfilerAssignment/version.py' 2022-11-03T10:36:21,286 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2022-11-03T10:36:21,290 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2022-11-03T10:36:21,294 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2022-11-03T10:36:21,299 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2022-11-03T10:36:21,303 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2022-11-03T10:36:21,307 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2022-11-03T10:36:21,311 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2022-11-03T10:36:21,337 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2022-11-03T10:36:21,346 adding 'SigProfilerAssignment/DecompositionPlots/reference_files/Accolade_fermante.png' 2022-11-03T10:36:21,349 adding 'SigProfilerAssignment/DecompositionPlots/reference_files/CREDIT.md' 2022-11-03T10:36:21,624 adding 'SigProfilerAssignment/DecompositionPlots/reference_files/Fonts/Arial Bold.ttf' 2022-11-03T10:36:21,643 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2022-11-03T10:36:21,645 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2022-11-03T10:36:21,653 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2022-11-03T10:36:21,656 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2022-11-03T10:36:21,691 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2022-11-03T10:36:21,798 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2022-11-03T10:36:21,812 adding 'SigProfilerAssignment/data/Samples.txt' 2022-11-03T10:36:21,815 adding 'SigProfilerAssignment/data/csvexample.csv' 2022-11-03T10:36:21,820 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2022-11-03T10:36:21,828 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2022-11-03T10:36:21,862 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2022-11-03T10:36:21,874 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2022-11-03T10:36:21,896 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2022-11-03T10:36:21,916 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2022-11-03T10:36:21,947 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2022-11-03T10:36:21,955 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2022-11-03T10:36:21,963 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2022-11-03T10:36:21,977 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2022-11-03T10:36:22,063 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2022-11-03T10:36:22,151 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2022-11-03T10:36:22,161 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2022-11-03T10:36:22,169 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2022-11-03T10:36:22,184 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2022-11-03T10:36:22,238 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2022-11-03T10:36:22,332 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2022-11-03T10:36:22,429 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2022-11-03T10:36:22,441 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2022-11-03T10:36:22,449 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2022-11-03T10:36:22,457 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2022-11-03T10:36:22,471 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2022-11-03T10:36:22,565 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2022-11-03T10:36:22,663 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2022-11-03T10:36:22,673 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2022-11-03T10:36:22,681 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2022-11-03T10:36:22,695 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2022-11-03T10:36:22,774 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2022-11-03T10:36:22,855 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2022-11-03T10:36:22,880 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2022-11-03T10:36:22,901 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2022-11-03T10:36:22,932 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2022-11-03T10:36:22,963 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2022-11-03T10:36:22,972 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2022-11-03T10:36:22,980 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2022-11-03T10:36:23,066 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2022-11-03T10:36:23,154 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2022-11-03T10:36:23,165 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2022-11-03T10:36:23,173 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2022-11-03T10:36:23,267 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2022-11-03T10:36:23,364 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2022-11-03T10:36:23,374 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2022-11-03T10:36:23,382 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2022-11-03T10:36:23,478 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2022-11-03T10:36:23,583 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2022-11-03T10:36:23,593 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2022-11-03T10:36:23,601 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2022-11-03T10:36:23,680 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2022-11-03T10:36:23,762 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2022-11-03T10:36:23,787 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2022-11-03T10:36:23,808 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2022-11-03T10:36:23,839 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2022-11-03T10:36:23,870 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2022-11-03T10:36:23,879 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2022-11-03T10:36:23,887 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2022-11-03T10:36:23,973 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2022-11-03T10:36:24,061 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2022-11-03T10:36:24,072 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2022-11-03T10:36:24,080 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2022-11-03T10:36:24,173 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2022-11-03T10:36:24,270 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2022-11-03T10:36:24,281 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2022-11-03T10:36:24,289 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2022-11-03T10:36:24,384 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2022-11-03T10:36:24,482 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2022-11-03T10:36:24,492 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2022-11-03T10:36:24,500 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2022-11-03T10:36:24,579 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2022-11-03T10:36:24,661 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2022-11-03T10:36:24,685 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2022-11-03T10:36:24,706 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2022-11-03T10:36:24,737 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2022-11-03T10:36:24,768 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2022-11-03T10:36:24,776 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2022-11-03T10:36:24,784 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2022-11-03T10:36:24,870 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2022-11-03T10:36:24,958 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2022-11-03T10:36:24,968 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2022-11-03T10:36:24,976 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2022-11-03T10:36:25,070 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2022-11-03T10:36:25,166 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2022-11-03T10:36:25,176 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2022-11-03T10:36:25,184 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2022-11-03T10:36:25,279 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2022-11-03T10:36:25,377 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2022-11-03T10:36:25,387 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2022-11-03T10:36:25,395 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2022-11-03T10:36:25,474 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2022-11-03T10:36:25,556 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2022-11-03T10:36:25,580 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2022-11-03T10:36:25,602 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2022-11-03T10:36:25,632 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2022-11-03T10:36:25,663 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2022-11-03T10:36:25,671 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2022-11-03T10:36:25,680 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2022-11-03T10:36:25,765 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2022-11-03T10:36:25,853 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2022-11-03T10:36:25,864 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2022-11-03T10:36:25,872 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2022-11-03T10:36:25,965 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2022-11-03T10:36:26,061 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2022-11-03T10:36:26,071 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2022-11-03T10:36:26,079 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2022-11-03T10:36:26,174 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2022-11-03T10:36:26,271 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2022-11-03T10:36:26,283 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2022-11-03T10:36:26,291 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2022-11-03T10:36:26,370 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2022-11-03T10:36:26,452 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2022-11-03T10:36:26,619 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2022-11-03T10:36:26,632 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2022-11-03T10:36:26,635 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt' 2022-11-03T10:36:26,650 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2022-11-03T10:36:26,700 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2022-11-03T10:36:26,748 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2022-11-03T10:36:26,832 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2022-11-03T10:36:26,886 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2022-11-03T10:36:26,893 adding 'SigProfilerAssignment-0.0.18.dist-info/LICENSE.txt' 2022-11-03T10:36:26,897 adding 'SigProfilerAssignment-0.0.18.dist-info/METADATA' 2022-11-03T10:36:26,899 adding 'SigProfilerAssignment-0.0.18.dist-info/WHEEL' 2022-11-03T10:36:26,901 adding 'SigProfilerAssignment-0.0.18.dist-info/top_level.txt' 2022-11-03T10:36:26,907 adding 'SigProfilerAssignment-0.0.18.dist-info/RECORD' 2022-11-03T10:36:27,028 removing build/bdist.linux-armv7l/wheel 2022-11-03T10:36:27,360 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2022-11-03T10:36:27,505 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.0.18-py3-none-any.whl size=4663223 sha256=e418f8786c23f1cdb13f1eec87b2a79361574a9d43b6cb1860c3faa2e51655f7 2022-11-03T10:36:27,507 Stored in directory: /tmp/pip-ephem-wheel-cache-olhjjzjl/wheels/5c/f1/e2/774752baad90d13df2b29f3c221991662a2cae6ed1cb0ad944 2022-11-03T10:36:27,551 Successfully built sigprofilerassignment 2022-11-03T10:36:27,924 Removed build tracker: '/tmp/pip-build-tracker-d6wuc3e1'