2022-11-04T04:22:55,432 Created temporary directory: /tmp/pip-ephem-wheel-cache-epfjj4gp 2022-11-04T04:22:55,434 Created temporary directory: /tmp/pip-build-tracker-rebmky1o 2022-11-04T04:22:55,434 Initialized build tracking at /tmp/pip-build-tracker-rebmky1o 2022-11-04T04:22:55,435 Created build tracker: /tmp/pip-build-tracker-rebmky1o 2022-11-04T04:22:55,435 Entered build tracker: /tmp/pip-build-tracker-rebmky1o 2022-11-04T04:22:55,435 Created temporary directory: /tmp/pip-wheel-mj8usiv3 2022-11-04T04:22:55,439 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-04T04:22:55,441 Created temporary directory: /tmp/pip-ephem-wheel-cache-7ope_b40 2022-11-04T04:22:55,468 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-04T04:22:55,472 2 location(s) to search for versions of wwpdb-utils-align: 2022-11-04T04:22:55,472 * https://pypi.org/simple/wwpdb-utils-align/ 2022-11-04T04:22:55,472 * https://www.piwheels.org/simple/wwpdb-utils-align/ 2022-11-04T04:22:55,472 Fetching project page and analyzing links: https://pypi.org/simple/wwpdb-utils-align/ 2022-11-04T04:22:55,473 Getting page https://pypi.org/simple/wwpdb-utils-align/ 2022-11-04T04:22:55,474 Found index url https://pypi.org/simple 2022-11-04T04:22:55,525 Fetched page https://pypi.org/simple/wwpdb-utils-align/ as application/vnd.pypi.simple.v1+json 2022-11-04T04:22:55,529 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/1d/a8/d3ad903296b72c5f03757660b34de9d74cad8a12250d69ccd6bf84c041db/wwpdb.utils.align-0.10-cp27-cp27m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,529 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/b9/a5/c318a98f0700364ef2a8b8555676e1a8eda80a0d58296c7e6de6c873e1f0/wwpdb.utils.align-0.10-cp27-cp27m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,529 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/7f/d7/ae5e2f0cbd80c442e6af6451e4d680d248088c3a623f733bbfeef1e31ae0/wwpdb.utils.align-0.10-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,529 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/49/0d/795e27fb08a7c7f8a34672da6b4a8164ad8d62956d920bf758f45dd9f41e/wwpdb.utils.align-0.10-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,530 Found link https://files.pythonhosted.org/packages/25/52/f224d04f128b12c37559d523f5e11dc561b28d4c1fec7853c94cd4377bb2/wwpdb.utils.align-0.10.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.10 2022-11-04T04:22:55,530 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/3a/ae/32a9cd447324404c88c9207e4b62f224bb7840267cfced51493ae0b3d59b/wwpdb.utils.align-0.11-cp27-cp27m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,530 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/84/79/cab96cf67ab9c0d3d8ce96d53478dca7b2bbe55540ff19c08861b2a6b6c4/wwpdb.utils.align-0.11-cp27-cp27m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,530 Found link https://files.pythonhosted.org/packages/fb/ac/f6df071644e3021037507a3eb4ed87086445132665c6bd79f6c709861a93/wwpdb.utils.align-0.11.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11 2022-11-04T04:22:55,531 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/6c/d1/b93a4246b5a1f02fb222bfe5813b0a82f43527255ccd23cfd1081dba83bb/wwpdb.utils.align-0.11.1-cp27-cp27m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,531 Found link https://files.pythonhosted.org/packages/78/be/2a83166158e9100dffabf3da0bb67f0ddc3b480497ce96a11b1f02686a0d/wwpdb.utils.align-0.11.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.1 2022-11-04T04:22:55,531 Skipping link: No binaries permitted for wwpdb-utils-align: https://files.pythonhosted.org/packages/93/65/44b1fd0ecae22a993f50d031d9d6a8a0d7118ebfd7967a4f5d2f40bad6b6/wwpdb.utils.align-0.11.2-cp27-cp27m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,532 Found link https://files.pythonhosted.org/packages/f3/35/58b7f11238cba57e152e5c536f770d29799cfed22a601b9a422d5d2fa296/wwpdb.utils.align-0.11.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.2 2022-11-04T04:22:55,532 Found link https://files.pythonhosted.org/packages/de/1d/902a35761181022388bd36741f99060c6c68cf68c8a9d3e54b1af6f7e22b/wwpdb.utils.align-0.11.3.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.3 2022-11-04T04:22:55,532 Found link https://files.pythonhosted.org/packages/72/f1/dbf1d3d7ce579ebfe697e9bf39915fdad652cfef8f577ab473bbb18638a9/wwpdb.utils.align-0.11.4.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.4 2022-11-04T04:22:55,532 Found link https://files.pythonhosted.org/packages/9d/36/1f149c592a06771cbbc5d4771652c846779fcf24505a368eb515e95a80d3/wwpdb.utils.align-0.11.5.tar.gz (from https://pypi.org/simple/wwpdb-utils-align/), version: 0.11.5 2022-11-04T04:22:55,533 Fetching project page and analyzing links: https://www.piwheels.org/simple/wwpdb-utils-align/ 2022-11-04T04:22:55,533 Getting page https://www.piwheels.org/simple/wwpdb-utils-align/ 2022-11-04T04:22:55,534 Found index url https://www.piwheels.org/simple 2022-11-04T04:22:55,710 Fetched page https://www.piwheels.org/simple/wwpdb-utils-align/ as text/html 2022-11-04T04:22:55,721 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.11.5-cp37-cp37m-linux_armv7l.whl#sha256=18fe5f9a1baff3d091a2e69a5fc07eb9d0bb9c041decdf4b4c29764c67d936c1 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,721 Skipping link: No binaries permitted for wwpdb-utils-align: 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https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp34-cp34m-linux_armv7l.whl#sha256=187aa2cc62cb9fc33666664df45110a8a9ea22bbb45ae35aa7dab2c181846c3e (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,728 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp35-cp35m-linux_armv7l.whl#sha256=f1b32225cb7d430e9fea4c6247fbe4fecf95a881104e4b4039b6ff343b28269c (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,728 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp35-cp35m-linux_armv6l.whl#sha256=f1b32225cb7d430e9fea4c6247fbe4fecf95a881104e4b4039b6ff343b28269c (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,728 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp37-cp37m-linux_armv7l.whl#sha256=dacd2265ff97e73728f1e856657fb1099e938b0a1ae4759ae0c7ba189b52f540 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,728 Skipping link: No binaries permitted for wwpdb-utils-align: https://www.piwheels.org/simple/wwpdb-utils-align/wwpdb.utils.align-0.10-cp37-cp37m-linux_armv6l.whl#sha256=dacd2265ff97e73728f1e856657fb1099e938b0a1ae4759ae0c7ba189b52f540 (from https://www.piwheels.org/simple/wwpdb-utils-align/) 2022-11-04T04:22:55,728 Skipping link: not a file: https://www.piwheels.org/simple/wwpdb-utils-align/ 2022-11-04T04:22:55,729 Skipping link: not a file: https://pypi.org/simple/wwpdb-utils-align/ 2022-11-04T04:22:55,748 Given no hashes to check 1 links for project 'wwpdb-utils-align': discarding no candidates 2022-11-04T04:22:55,764 Collecting wwpdb-utils-align==0.11.5 2022-11-04T04:22:55,767 Created temporary directory: /tmp/pip-unpack-r4_2f1aq 2022-11-04T04:22:55,816 Downloading wwpdb.utils.align-0.11.5.tar.gz (610 kB) 2022-11-04T04:22:56,448 Added wwpdb-utils-align==0.11.5 from https://files.pythonhosted.org/packages/9d/36/1f149c592a06771cbbc5d4771652c846779fcf24505a368eb515e95a80d3/wwpdb.utils.align-0.11.5.tar.gz to build tracker '/tmp/pip-build-tracker-rebmky1o' 2022-11-04T04:22:56,450 Running setup.py (path:/tmp/pip-wheel-mj8usiv3/wwpdb-utils-align_377c5f0bac304900a84f5ae64f9f86ee/setup.py) egg_info for package wwpdb-utils-align 2022-11-04T04:22:56,450 Created temporary directory: /tmp/pip-pip-egg-info-29ebjupm 2022-11-04T04:22:56,451 Preparing metadata (setup.py): started 2022-11-04T04:22:56,451 Running command python setup.py egg_info 2022-11-04T04:22:57,725 running egg_info 2022-11-04T04:22:57,728 creating /tmp/pip-pip-egg-info-29ebjupm/wwpdb.utils.align.egg-info 2022-11-04T04:22:57,750 writing /tmp/pip-pip-egg-info-29ebjupm/wwpdb.utils.align.egg-info/PKG-INFO 2022-11-04T04:22:57,753 writing dependency_links to /tmp/pip-pip-egg-info-29ebjupm/wwpdb.utils.align.egg-info/dependency_links.txt 2022-11-04T04:22:57,755 writing requirements to /tmp/pip-pip-egg-info-29ebjupm/wwpdb.utils.align.egg-info/requires.txt 2022-11-04T04:22:57,756 writing top-level names to /tmp/pip-pip-egg-info-29ebjupm/wwpdb.utils.align.egg-info/top_level.txt 2022-11-04T04:22:57,758 writing manifest file '/tmp/pip-pip-egg-info-29ebjupm/wwpdb.utils.align.egg-info/SOURCES.txt' 2022-11-04T04:22:57,837 reading manifest file '/tmp/pip-pip-egg-info-29ebjupm/wwpdb.utils.align.egg-info/SOURCES.txt' 2022-11-04T04:22:57,838 reading manifest template 'MANIFEST.in' 2022-11-04T04:22:57,862 adding license file 'LICENSE' 2022-11-04T04:22:57,872 writing manifest file '/tmp/pip-pip-egg-info-29ebjupm/wwpdb.utils.align.egg-info/SOURCES.txt' 2022-11-04T04:22:58,002 Preparing metadata (setup.py): finished with status 'done' 2022-11-04T04:22:58,008 Source in /tmp/pip-wheel-mj8usiv3/wwpdb-utils-align_377c5f0bac304900a84f5ae64f9f86ee has version 0.11.5, which satisfies requirement wwpdb-utils-align==0.11.5 from https://files.pythonhosted.org/packages/9d/36/1f149c592a06771cbbc5d4771652c846779fcf24505a368eb515e95a80d3/wwpdb.utils.align-0.11.5.tar.gz 2022-11-04T04:22:58,009 Removed wwpdb-utils-align==0.11.5 from https://files.pythonhosted.org/packages/9d/36/1f149c592a06771cbbc5d4771652c846779fcf24505a368eb515e95a80d3/wwpdb.utils.align-0.11.5.tar.gz from build tracker '/tmp/pip-build-tracker-rebmky1o' 2022-11-04T04:22:58,014 Created temporary directory: /tmp/pip-unpack-0bs1g7o7 2022-11-04T04:22:58,014 Building wheels for collected packages: wwpdb-utils-align 2022-11-04T04:22:58,019 Created temporary directory: /tmp/pip-wheel-39yapnbb 2022-11-04T04:22:58,019 Building wheel for wwpdb-utils-align (setup.py): started 2022-11-04T04:22:58,020 Destination directory: /tmp/pip-wheel-39yapnbb 2022-11-04T04:22:58,020 Running command python setup.py bdist_wheel 2022-11-04T04:22:59,245 running bdist_wheel 2022-11-04T04:22:59,312 running build 2022-11-04T04:22:59,313 running build_py 2022-11-04T04:22:59,338 creating build 2022-11-04T04:22:59,338 creating build/lib.linux-armv7l-cpython-39 2022-11-04T04:22:59,339 creating build/lib.linux-armv7l-cpython-39/wwpdb 2022-11-04T04:22:59,340 copying wwpdb/__init__.py -> build/lib.linux-armv7l-cpython-39/wwpdb 2022-11-04T04:22:59,342 creating build/lib.linux-armv7l-cpython-39/wwpdb/utils 2022-11-04T04:22:59,343 copying wwpdb/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/wwpdb/utils 2022-11-04T04:22:59,346 creating build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-11-04T04:22:59,346 copying wwpdb/utils/align/SequenceReferenceData.py -> build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-11-04T04:22:59,348 copying wwpdb/utils/align/SequenceExamples.py -> build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-11-04T04:22:59,353 copying wwpdb/utils/align/__init__.py -> build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-11-04T04:22:59,363 running build_ext 2022-11-04T04:22:59,419 ------ WARNING could not locate python library 2022-11-04T04:22:59,422 ------------- setup.py ----------------- 2022-11-04T04:22:59,422 Extension source path /tmp/pip-wheel-mj8usiv3/wwpdb-utils-align_377c5f0bac304900a84f5ae64f9f86ee 2022-11-04T04:22:59,423 CMAKE_ARGS ['-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/tmp/pip-wheel-mj8usiv3/wwpdb-utils-align_377c5f0bac304900a84f5ae64f9f86ee/build/lib.linux-armv7l-cpython-39/wwpdb/utils/align', '-DPYTHON_EXECUTABLE=/usr/bin/python3', '-DPYTHON_INCLUDE_DIR=/usr/include/python3.9', '-DCMAKE_BUILD_TYPE=Release'] 2022-11-04T04:22:59,423 self.build_temp build/temp.linux-armv7l-cpython-39 2022-11-04T04:22:59,423 extdir /tmp/pip-wheel-mj8usiv3/wwpdb-utils-align_377c5f0bac304900a84f5ae64f9f86ee/build/lib.linux-armv7l-cpython-39/wwpdb/utils/align 2022-11-04T04:22:59,423 ext.name wwpdb.utils.align.alignlib 2022-11-04T04:22:59,423 sys.executable /usr/bin/python3 2022-11-04T04:22:59,423 sys.exec_prefix /usr 2022-11-04T04:22:59,423 CXXFLAGS -DVERSION_INFO=\"0.11.5\" 2022-11-04T04:22:59,842 -- The C compiler identification is GNU 10.2.1 2022-11-04T04:23:00,195 -- The CXX compiler identification is GNU 10.2.1 2022-11-04T04:23:00,245 -- Detecting C compiler ABI info 2022-11-04T04:23:00,642 -- Detecting C compiler ABI info - done 2022-11-04T04:23:00,700 -- Check for working C compiler: /usr/bin/cc - skipped 2022-11-04T04:23:00,702 -- Detecting C compile features 2022-11-04T04:23:00,704 -- Detecting C compile features - done 2022-11-04T04:23:00,731 -- Detecting CXX compiler ABI info 2022-11-04T04:23:01,204 -- Detecting CXX compiler ABI info - done 2022-11-04T04:23:01,264 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2022-11-04T04:23:01,266 -- Detecting CXX compile features 2022-11-04T04:23:01,269 -- Detecting CXX compile features - done 2022-11-04T04:23:01,337 -- Found PythonInterp: /usr/bin/python3 (found version "3.9.2") 2022-11-04T04:23:01,364 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so (found version "3.9.2") 2022-11-04T04:23:01,364 -- Python include path set to /usr/include/python3.9 2022-11-04T04:23:02,342 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2022-11-04T04:23:02,360 -- Performing Test HAS_CPP14_FLAG 2022-11-04T04:23:02,800 -- Performing Test HAS_CPP14_FLAG - Success 2022-11-04T04:23:02,819 -- pybind11 v2.3.dev0 2022-11-04T04:23:02,820 -- Compiler flags -Wall -Wno-unused-variable -Wno-unused-value -Wno-unused-but-set-variable -Wno-deprecated-declarations -DBIG_ENDIAN_PLATFORM -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -fno-common -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -flto 2022-11-04T04:23:02,821 -- ---CMAKE MODULE PATH - 2022-11-04T04:23:02,821 -- ---CMAKE SOURCE DIR - /tmp/pip-wheel-mj8usiv3/wwpdb-utils-align_377c5f0bac304900a84f5ae64f9f86ee 2022-11-04T04:23:02,821 -- ---CMAKE PROJECT DIR - /tmp/pip-wheel-mj8usiv3/wwpdb-utils-align_377c5f0bac304900a84f5ae64f9f86ee 2022-11-04T04:23:02,863 -- Performing Test HAS_FLTO 2022-11-04T04:23:03,523 -- Performing Test HAS_FLTO - Success 2022-11-04T04:23:03,525 -- LTO enabled 2022-11-04T04:23:03,526 STATUS,---ALL DONE WITH CMAKE 2022-11-04T04:23:03,529 -- Configuring done 2022-11-04T04:23:03,652 -- Generating done 2022-11-04T04:23:03,672 -- Build files have been written to: /tmp/pip-wheel-mj8usiv3/wwpdb-utils-align_377c5f0bac304900a84f5ae64f9f86ee/build/temp.linux-armv7l-cpython-39 2022-11-04T04:23:03,899 Scanning dependencies of target align 2022-11-04T04:23:03,956 [ 12%] Building CXX object CMakeFiles/align.dir/modules/PairwiseAlign/src/AlignUtil.C.o 2022-11-04T04:23:03,957 [ 12%] Building CXX object CMakeFiles/align.dir/modules/PairwiseAlign/src/PairwiseAlign.C.o 2022-11-04T04:23:05,115 [ 18%] Building CXX object CMakeFiles/align.dir/modules/PairwiseAlign/src/PseudoMultiAlign.C.o 2022-11-04T04:23:08,484 [ 18%] Built target align 2022-11-04T04:23:08,540 Scanning dependencies of target align-all 2022-11-04T04:23:08,593 [ 25%] Linking CXX static library lib/libalign-all.a 2022-11-04T04:23:08,774 [ 25%] Built target align-all 2022-11-04T04:23:08,834 Scanning dependencies of target align_test_4 2022-11-04T04:23:08,893 [ 31%] Building CXX object CMakeFiles/align_test_4.dir/modules/PairwiseAlign/test/testRefSeqAlign.C.o 2022-11-04T04:23:08,958 Scanning dependencies of target alignlib 2022-11-04T04:23:09,021 [ 37%] Building CXX object CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapPairwiseAlign.cpp.o 2022-11-04T04:23:10,629 [ 43%] Linking CXX executable bin/align_test_4 2022-11-04T04:23:15,852 [ 43%] Built target align_test_4 2022-11-04T04:23:15,921 Scanning dependencies of target align_test_1 2022-11-04T04:23:15,981 [ 50%] Building CXX object CMakeFiles/align_test_1.dir/modules/PairwiseAlign/test/testPairwiseAlign.C.o 2022-11-04T04:23:18,437 [ 56%] Linking CXX executable bin/align_test_1 2022-11-04T04:23:19,571 [ 62%] Building CXX object CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapPseudoMultiAlign.cpp.o 2022-11-04T04:23:25,431 [ 62%] Built target align_test_1 2022-11-04T04:23:25,498 Scanning dependencies of target align_test_3 2022-11-04T04:23:25,560 [ 68%] Building CXX object CMakeFiles/align_test_3.dir/modules/PairwiseAlign/test/testPseudoMultiAlign.C.o 2022-11-04T04:23:26,866 [ 75%] Linking CXX executable bin/align_test_3 2022-11-04T04:23:29,610 [ 81%] Building CXX object CMakeFiles/alignlib.dir/modules/cpp-alignlib-wrapper/src/wrapalignlib.cpp.o 2022-11-04T04:23:31,839 [ 81%] Built target align_test_3 2022-11-04T04:23:31,909 Scanning dependencies of target align_test_2 2022-11-04T04:23:31,970 [ 87%] Building CXX object CMakeFiles/align_test_2.dir/modules/PairwiseAlign/test/testPairwiseAlignZF.C.o 2022-11-04T04:23:34,157 [ 93%] Linking CXX executable bin/align_test_2 2022-11-04T04:23:35,306 [100%] Linking CXX shared module ../lib.linux-armv7l-cpython-39/wwpdb/utils/align/alignlib.cpython-39-arm-linux-gnueabihf.so 2022-11-04T04:23:38,861 [100%] Built target align_test_2 2022-11-04T04:23:53,444 [100%] Built target alignlib 2022-11-04T04:23:53,532 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-04T04:23:53,533 warnings.warn( 2022-11-04T04:23:53,557 installing to build/bdist.linux-armv7l/wheel 2022-11-04T04:23:53,558 running install 2022-11-04T04:23:53,583 running install_lib 2022-11-04T04:23:53,608 creating build/bdist.linux-armv7l 2022-11-04T04:23:53,608 creating build/bdist.linux-armv7l/wheel 2022-11-04T04:23:53,610 creating build/bdist.linux-armv7l/wheel/wwpdb 2022-11-04T04:23:53,612 creating build/bdist.linux-armv7l/wheel/wwpdb/utils 2022-11-04T04:23:53,613 creating build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-11-04T04:23:53,614 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/align/alignlib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-11-04T04:23:53,622 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/align/SequenceReferenceData.py -> build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-11-04T04:23:53,624 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/align/SequenceExamples.py -> build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-11-04T04:23:53,627 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/align/__init__.py -> build/bdist.linux-armv7l/wheel/wwpdb/utils/align 2022-11-04T04:23:53,629 copying build/lib.linux-armv7l-cpython-39/wwpdb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/wwpdb/utils 2022-11-04T04:23:53,631 copying build/lib.linux-armv7l-cpython-39/wwpdb/__init__.py -> build/bdist.linux-armv7l/wheel/wwpdb 2022-11-04T04:23:53,633 running install_egg_info 2022-11-04T04:23:53,696 running egg_info 2022-11-04T04:23:53,718 writing wwpdb.utils.align.egg-info/PKG-INFO 2022-11-04T04:23:53,720 writing dependency_links to wwpdb.utils.align.egg-info/dependency_links.txt 2022-11-04T04:23:53,722 writing requirements to wwpdb.utils.align.egg-info/requires.txt 2022-11-04T04:23:53,723 writing top-level names to wwpdb.utils.align.egg-info/top_level.txt 2022-11-04T04:23:53,755 reading manifest file 'wwpdb.utils.align.egg-info/SOURCES.txt' 2022-11-04T04:23:53,794 reading manifest template 'MANIFEST.in' 2022-11-04T04:23:53,809 adding license file 'LICENSE' 2022-11-04T04:23:53,821 writing manifest file 'wwpdb.utils.align.egg-info/SOURCES.txt' 2022-11-04T04:23:53,823 Copying wwpdb.utils.align.egg-info to build/bdist.linux-armv7l/wheel/wwpdb.utils.align-0.11.5-py3.9.egg-info 2022-11-04T04:23:53,836 running install_scripts 2022-11-04T04:23:53,913 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-11-04T04:23:53,917 creating build/bdist.linux-armv7l/wheel/wwpdb.utils.align-0.11.5.dist-info/WHEEL 2022-11-04T04:23:53,920 creating '/tmp/pip-wheel-39yapnbb/wwpdb.utils.align-0.11.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-04T04:23:53,933 adding 'wwpdb/__init__.py' 2022-11-04T04:23:53,935 adding 'wwpdb/utils/__init__.py' 2022-11-04T04:23:53,942 adding 'wwpdb/utils/align/SequenceExamples.py' 2022-11-04T04:23:53,944 adding 'wwpdb/utils/align/SequenceReferenceData.py' 2022-11-04T04:23:53,945 adding 'wwpdb/utils/align/__init__.py' 2022-11-04T04:23:53,993 adding 'wwpdb/utils/align/alignlib.cpython-39-arm-linux-gnueabihf.so' 2022-11-04T04:23:53,997 adding 'wwpdb.utils.align-0.11.5.dist-info/LICENSE' 2022-11-04T04:23:53,998 adding 'wwpdb.utils.align-0.11.5.dist-info/METADATA' 2022-11-04T04:23:53,999 adding 'wwpdb.utils.align-0.11.5.dist-info/WHEEL' 2022-11-04T04:23:53,999 adding 'wwpdb.utils.align-0.11.5.dist-info/top_level.txt' 2022-11-04T04:23:54,000 adding 'wwpdb.utils.align-0.11.5.dist-info/RECORD' 2022-11-04T04:23:54,003 removing build/bdist.linux-armv7l/wheel 2022-11-04T04:23:54,162 Building wheel for wwpdb-utils-align (setup.py): finished with status 'done' 2022-11-04T04:23:54,167 Created wheel for wwpdb-utils-align: filename=wwpdb.utils.align-0.11.5-cp39-cp39-linux_armv7l.whl size=107829 sha256=3c47ac5eb38b81d8bc9fe64715450e0ec51d5c149e7c14e05a30d6d1b6b997af 2022-11-04T04:23:54,168 Stored in directory: /tmp/pip-ephem-wheel-cache-7ope_b40/wheels/46/5c/48/4a3425a6c7f0422f3baaf88af7b31eb1193c97fafeb6cf2f27 2022-11-04T04:23:54,179 Successfully built wwpdb-utils-align 2022-11-04T04:23:54,187 Removed build tracker: '/tmp/pip-build-tracker-rebmky1o'