2022-11-07T15:03:28,148 Created temporary directory: /tmp/pip-ephem-wheel-cache-riyu81fi
2022-11-07T15:03:28,152 Created temporary directory: /tmp/pip-build-tracker-a24xltjk
2022-11-07T15:03:28,153 Initialized build tracking at /tmp/pip-build-tracker-a24xltjk
2022-11-07T15:03:28,153 Created build tracker: /tmp/pip-build-tracker-a24xltjk
2022-11-07T15:03:28,154 Entered build tracker: /tmp/pip-build-tracker-a24xltjk
2022-11-07T15:03:28,155 Created temporary directory: /tmp/pip-wheel-862_9j_w
2022-11-07T15:03:28,163 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-11-07T15:03:28,168 Created temporary directory: /tmp/pip-ephem-wheel-cache-bwvdwkjq
2022-11-07T15:03:28,218 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-11-07T15:03:28,226 2 location(s) to search for versions of biobb-gromacs:
2022-11-07T15:03:28,226 * https://pypi.org/simple/biobb-gromacs/
2022-11-07T15:03:28,226 * https://www.piwheels.org/simple/biobb-gromacs/
2022-11-07T15:03:28,227 Fetching project page and analyzing links: https://pypi.org/simple/biobb-gromacs/
2022-11-07T15:03:28,228 Getting page https://pypi.org/simple/biobb-gromacs/
2022-11-07T15:03:28,231 Found index url https://pypi.org/simple
2022-11-07T15:03:28,455 Fetched page https://pypi.org/simple/biobb-gromacs/ as application/vnd.pypi.simple.v1+json
2022-11-07T15:03:28,458   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/86/a0/f92aeb96c32f5abc4e8642e95ab8248f3105dfde5dd0e89435ae70448607/biobb_gromacs-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2022-11-07T15:03:28,460   Found link https://files.pythonhosted.org/packages/2a/4b/be17e7b27a96404d0f87426fbabd98dde1c97a7b8a1c54d041066c23ccf4/biobb_gromacs-3.8.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.0
2022-11-07T15:03:28,461   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/2e/0e/747bdb6621a1a44e3f02427166092650a9a68398395ca67f2937b15d7f41/biobb_gromacs-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2022-11-07T15:03:28,462   Found link https://files.pythonhosted.org/packages/ea/60/3112f633e90ddc93f3db9c2f4e9e4e3eb1100e3a09c87afbfc7abda281a8/biobb_gromacs-3.8.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.1
2022-11-07T15:03:28,463 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-gromacs/
2022-11-07T15:03:28,463 Getting page https://www.piwheels.org/simple/biobb-gromacs/
2022-11-07T15:03:28,465 Found index url https://www.piwheels.org/simple
2022-11-07T15:03:28,696 Fetched page https://www.piwheels.org/simple/biobb-gromacs/ as text/html
2022-11-07T15:03:28,699   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.8.0-py3-none-any.whl#sha256=7add16113788a2a933020f11c3ee9750cca1751c59ff4805bf3cc10ad2088928 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2022-11-07T15:03:28,699 Skipping link: not a file: https://www.piwheels.org/simple/biobb-gromacs/
2022-11-07T15:03:28,700 Skipping link: not a file: https://pypi.org/simple/biobb-gromacs/
2022-11-07T15:03:28,732 Given no hashes to check 1 links for project 'biobb-gromacs': discarding no candidates
2022-11-07T15:03:28,765 Collecting biobb-gromacs==3.8.1
2022-11-07T15:03:28,770   Created temporary directory: /tmp/pip-unpack-6i5_y3h5
2022-11-07T15:03:28,868   Downloading biobb_gromacs-3.8.1.tar.gz (22 kB)
2022-11-07T15:03:29,008   Added biobb-gromacs==3.8.1 from https://files.pythonhosted.org/packages/ea/60/3112f633e90ddc93f3db9c2f4e9e4e3eb1100e3a09c87afbfc7abda281a8/biobb_gromacs-3.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-a24xltjk'
2022-11-07T15:03:29,010   Running setup.py (path:/tmp/pip-wheel-862_9j_w/biobb-gromacs_aafefb3e50d04bf486958b02fb6d52c3/setup.py) egg_info for package biobb-gromacs
2022-11-07T15:03:29,012   Created temporary directory: /tmp/pip-pip-egg-info-zgrsw8z9
2022-11-07T15:03:29,012   Preparing metadata (setup.py): started
2022-11-07T15:03:29,014   Running command python setup.py egg_info
2022-11-07T15:03:31,351   running egg_info
2022-11-07T15:03:31,356   creating /tmp/pip-pip-egg-info-zgrsw8z9/biobb_gromacs.egg-info
2022-11-07T15:03:31,411   writing /tmp/pip-pip-egg-info-zgrsw8z9/biobb_gromacs.egg-info/PKG-INFO
2022-11-07T15:03:31,415   writing dependency_links to /tmp/pip-pip-egg-info-zgrsw8z9/biobb_gromacs.egg-info/dependency_links.txt
2022-11-07T15:03:31,420   writing entry points to /tmp/pip-pip-egg-info-zgrsw8z9/biobb_gromacs.egg-info/entry_points.txt
2022-11-07T15:03:31,422   writing requirements to /tmp/pip-pip-egg-info-zgrsw8z9/biobb_gromacs.egg-info/requires.txt
2022-11-07T15:03:31,424   writing top-level names to /tmp/pip-pip-egg-info-zgrsw8z9/biobb_gromacs.egg-info/top_level.txt
2022-11-07T15:03:31,426   writing manifest file '/tmp/pip-pip-egg-info-zgrsw8z9/biobb_gromacs.egg-info/SOURCES.txt'
2022-11-07T15:03:31,605   reading manifest file '/tmp/pip-pip-egg-info-zgrsw8z9/biobb_gromacs.egg-info/SOURCES.txt'
2022-11-07T15:03:31,614   writing manifest file '/tmp/pip-pip-egg-info-zgrsw8z9/biobb_gromacs.egg-info/SOURCES.txt'
2022-11-07T15:03:31,819   Preparing metadata (setup.py): finished with status 'done'
2022-11-07T15:03:31,831   Source in /tmp/pip-wheel-862_9j_w/biobb-gromacs_aafefb3e50d04bf486958b02fb6d52c3 has version 3.8.1, which satisfies requirement biobb-gromacs==3.8.1 from https://files.pythonhosted.org/packages/ea/60/3112f633e90ddc93f3db9c2f4e9e4e3eb1100e3a09c87afbfc7abda281a8/biobb_gromacs-3.8.1.tar.gz
2022-11-07T15:03:31,833   Removed biobb-gromacs==3.8.1 from https://files.pythonhosted.org/packages/ea/60/3112f633e90ddc93f3db9c2f4e9e4e3eb1100e3a09c87afbfc7abda281a8/biobb_gromacs-3.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-a24xltjk'
2022-11-07T15:03:31,848 Created temporary directory: /tmp/pip-unpack-q639wnfu
2022-11-07T15:03:31,850 Building wheels for collected packages: biobb-gromacs
2022-11-07T15:03:31,858   Created temporary directory: /tmp/pip-wheel-zp5dn7vd
2022-11-07T15:03:31,859   Building wheel for biobb-gromacs (setup.py): started
2022-11-07T15:03:31,861   Destination directory: /tmp/pip-wheel-zp5dn7vd
2022-11-07T15:03:31,862   Running command python setup.py bdist_wheel
2022-11-07T15:03:34,217   running bdist_wheel
2022-11-07T15:03:34,928   running build
2022-11-07T15:03:34,929   running build_py
2022-11-07T15:03:34,992   creating build
2022-11-07T15:03:34,993   creating build/lib
2022-11-07T15:03:34,994   creating build/lib/biobb_gromacs
2022-11-07T15:03:34,996   copying biobb_gromacs/__init__.py -> build/lib/biobb_gromacs
2022-11-07T15:03:35,001   creating build/lib/biobb_gromacs/test
2022-11-07T15:03:35,002   copying biobb_gromacs/test/__init__.py -> build/lib/biobb_gromacs/test
2022-11-07T15:03:35,008   creating build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,009   copying biobb_gromacs/gromacs/__init__.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,013   copying biobb_gromacs/gromacs/mdrun.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,017   copying biobb_gromacs/gromacs/genion.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,021   copying biobb_gromacs/gromacs/trjcat.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,026   copying biobb_gromacs/gromacs/gmxselect.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,030   copying biobb_gromacs/gromacs/common.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,034   copying biobb_gromacs/gromacs/grompp.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,039   copying biobb_gromacs/gromacs/genrestr.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,043   copying biobb_gromacs/gromacs/grompp_mdrun.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,047   copying biobb_gromacs/gromacs/solvate.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,052   copying biobb_gromacs/gromacs/make_ndx.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,056   copying biobb_gromacs/gromacs/pdb2gmx.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,060   copying biobb_gromacs/gromacs/editconf.py -> build/lib/biobb_gromacs/gromacs
2022-11-07T15:03:35,066   creating build/lib/biobb_gromacs/gromacs_extra
2022-11-07T15:03:35,067   copying biobb_gromacs/gromacs_extra/__init__.py -> build/lib/biobb_gromacs/gromacs_extra
2022-11-07T15:03:35,071   copying biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/lib/biobb_gromacs/gromacs_extra
2022-11-07T15:03:35,075   copying biobb_gromacs/gromacs_extra/append_ligand.py -> build/lib/biobb_gromacs/gromacs_extra
2022-11-07T15:03:35,150   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-11-07T15:03:35,151     setuptools.SetuptoolsDeprecationWarning,
2022-11-07T15:03:35,208   installing to build/bdist.linux-armv7l/wheel
2022-11-07T15:03:35,209   running install
2022-11-07T15:03:35,271   running install_lib
2022-11-07T15:03:35,331   creating build/bdist.linux-armv7l
2022-11-07T15:03:35,332   creating build/bdist.linux-armv7l/wheel
2022-11-07T15:03:35,335   creating build/bdist.linux-armv7l/wheel/biobb_gromacs
2022-11-07T15:03:35,337   copying build/lib/biobb_gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs
2022-11-07T15:03:35,341   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/test
2022-11-07T15:03:35,343   copying build/lib/biobb_gromacs/test/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/test
2022-11-07T15:03:35,347   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,348   copying build/lib/biobb_gromacs/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,352   copying build/lib/biobb_gromacs/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,357   copying build/lib/biobb_gromacs/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,361   copying build/lib/biobb_gromacs/gromacs/trjcat.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,365   copying build/lib/biobb_gromacs/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,369   copying build/lib/biobb_gromacs/gromacs/common.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,374   copying build/lib/biobb_gromacs/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,378   copying build/lib/biobb_gromacs/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,382   copying build/lib/biobb_gromacs/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,386   copying build/lib/biobb_gromacs/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,391   copying build/lib/biobb_gromacs/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,395   copying build/lib/biobb_gromacs/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,399   copying build/lib/biobb_gromacs/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-11-07T15:03:35,404   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2022-11-07T15:03:35,406   copying build/lib/biobb_gromacs/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2022-11-07T15:03:35,409   copying build/lib/biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2022-11-07T15:03:35,413   copying build/lib/biobb_gromacs/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2022-11-07T15:03:35,417   running install_egg_info
2022-11-07T15:03:35,564   running egg_info
2022-11-07T15:03:35,620   writing biobb_gromacs.egg-info/PKG-INFO
2022-11-07T15:03:35,624   writing dependency_links to biobb_gromacs.egg-info/dependency_links.txt
2022-11-07T15:03:35,629   writing entry points to biobb_gromacs.egg-info/entry_points.txt
2022-11-07T15:03:35,631   writing requirements to biobb_gromacs.egg-info/requires.txt
2022-11-07T15:03:35,633   writing top-level names to biobb_gromacs.egg-info/top_level.txt
2022-11-07T15:03:35,699   reading manifest file 'biobb_gromacs.egg-info/SOURCES.txt'
2022-11-07T15:03:35,710   writing manifest file 'biobb_gromacs.egg-info/SOURCES.txt'
2022-11-07T15:03:35,713   Copying biobb_gromacs.egg-info to build/bdist.linux-armv7l/wheel/biobb_gromacs-3.8.1-py3.7.egg-info
2022-11-07T15:03:35,735   running install_scripts
2022-11-07T15:03:35,932   creating build/bdist.linux-armv7l/wheel/biobb_gromacs-3.8.1.dist-info/WHEEL
2022-11-07T15:03:35,936   creating '/tmp/pip-wheel-zp5dn7vd/biobb_gromacs-3.8.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-11-07T15:03:35,940   adding 'biobb_gromacs/__init__.py'
2022-11-07T15:03:35,944   adding 'biobb_gromacs/gromacs/__init__.py'
2022-11-07T15:03:35,948   adding 'biobb_gromacs/gromacs/common.py'
2022-11-07T15:03:35,952   adding 'biobb_gromacs/gromacs/editconf.py'
2022-11-07T15:03:35,956   adding 'biobb_gromacs/gromacs/genion.py'
2022-11-07T15:03:35,960   adding 'biobb_gromacs/gromacs/genrestr.py'
2022-11-07T15:03:35,964   adding 'biobb_gromacs/gromacs/gmxselect.py'
2022-11-07T15:03:35,968   adding 'biobb_gromacs/gromacs/grompp.py'
2022-11-07T15:03:35,973   adding 'biobb_gromacs/gromacs/grompp_mdrun.py'
2022-11-07T15:03:35,976   adding 'biobb_gromacs/gromacs/make_ndx.py'
2022-11-07T15:03:35,981   adding 'biobb_gromacs/gromacs/mdrun.py'
2022-11-07T15:03:35,985   adding 'biobb_gromacs/gromacs/pdb2gmx.py'
2022-11-07T15:03:35,988   adding 'biobb_gromacs/gromacs/solvate.py'
2022-11-07T15:03:35,992   adding 'biobb_gromacs/gromacs/trjcat.py'
2022-11-07T15:03:35,995   adding 'biobb_gromacs/gromacs_extra/__init__.py'
2022-11-07T15:03:35,999   adding 'biobb_gromacs/gromacs_extra/append_ligand.py'
2022-11-07T15:03:36,003   adding 'biobb_gromacs/gromacs_extra/ndx2resttop.py'
2022-11-07T15:03:36,006   adding 'biobb_gromacs/test/__init__.py'
2022-11-07T15:03:36,011   adding 'biobb_gromacs-3.8.1.dist-info/METADATA'
2022-11-07T15:03:36,013   adding 'biobb_gromacs-3.8.1.dist-info/WHEEL'
2022-11-07T15:03:36,015   adding 'biobb_gromacs-3.8.1.dist-info/entry_points.txt'
2022-11-07T15:03:36,017   adding 'biobb_gromacs-3.8.1.dist-info/top_level.txt'
2022-11-07T15:03:36,019   adding 'biobb_gromacs-3.8.1.dist-info/RECORD'
2022-11-07T15:03:36,022   removing build/bdist.linux-armv7l/wheel
2022-11-07T15:03:36,283   Building wheel for biobb-gromacs (setup.py): finished with status 'done'
2022-11-07T15:03:36,291   Created wheel for biobb-gromacs: filename=biobb_gromacs-3.8.1-py3-none-any.whl size=47984 sha256=dc62def4ee04dacfa7a29ad52d42e1fa4c563b5ce844e1ae8f55221271bf2382
2022-11-07T15:03:36,294   Stored in directory: /tmp/pip-ephem-wheel-cache-bwvdwkjq/wheels/61/06/34/24a6e6a12accf1537c943545f25106aa1ddd989dec5888ebb7
2022-11-07T15:03:36,320 Successfully built biobb-gromacs
2022-11-07T15:03:36,331 Removed build tracker: '/tmp/pip-build-tracker-a24xltjk'