2022-11-07T18:36:04,647 Created temporary directory: /tmp/pip-ephem-wheel-cache-wiog90lr 2022-11-07T18:36:04,649 Created temporary directory: /tmp/pip-build-tracker-sdjvqbvh 2022-11-07T18:36:04,649 Initialized build tracking at /tmp/pip-build-tracker-sdjvqbvh 2022-11-07T18:36:04,650 Created build tracker: /tmp/pip-build-tracker-sdjvqbvh 2022-11-07T18:36:04,650 Entered build tracker: /tmp/pip-build-tracker-sdjvqbvh 2022-11-07T18:36:04,650 Created temporary directory: /tmp/pip-wheel-61s8vyao 2022-11-07T18:36:04,653 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-07T18:36:04,656 Created temporary directory: /tmp/pip-ephem-wheel-cache-9pnoy3gy 2022-11-07T18:36:04,683 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-07T18:36:04,686 2 location(s) to search for versions of moffragmentor: 2022-11-07T18:36:04,686 * https://pypi.org/simple/moffragmentor/ 2022-11-07T18:36:04,686 * https://www.piwheels.org/simple/moffragmentor/ 2022-11-07T18:36:04,687 Fetching project page and analyzing links: https://pypi.org/simple/moffragmentor/ 2022-11-07T18:36:04,687 Getting page https://pypi.org/simple/moffragmentor/ 2022-11-07T18:36:04,688 Found index url https://pypi.org/simple 2022-11-07T18:36:04,741 Fetched page https://pypi.org/simple/moffragmentor/ as application/vnd.pypi.simple.v1+json 2022-11-07T18:36:04,744 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/11/aa/d5559b4f957dd5b7ea97963eeffa4b5772dee0cc654224cda68dc78f6db5/moffragmentor-0.0.1.dev0-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-11-07T18:36:04,745 Found link https://files.pythonhosted.org/packages/8d/f4/7be5cc9c5ddd459ff95fa1ebb28304d464ef179273ba72e8cc1e401e3a48/moffragmentor-0.0.1.dev0.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.1.dev0 2022-11-07T18:36:04,745 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/fc/9d/1605cb318061ebc8bf8352979488ce1abb7b33523866363aeb45e2b63c6d/moffragmentor-0.0.1-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-11-07T18:36:04,745 Found link https://files.pythonhosted.org/packages/39/b9/de1ffc5b3dac4d26e1f32f2b607015016f3a48ba8e73924d4026ae42e82e/moffragmentor-0.0.1.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.1 2022-11-07T18:36:04,746 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/07/ce/8e133d68fd956eeb5f0d87e5491f5b2e3f523f0906401cf30013d1defd5c/moffragmentor-0.0.2-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-11-07T18:36:04,746 Found link https://files.pythonhosted.org/packages/16/70/10aa766b2de8d201826dcdf2ce3b97f9e5368dc34f52dcb746ac9304ad50/moffragmentor-0.0.2.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.2 2022-11-07T18:36:04,747 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/5f/aa/14ff551a38b91c97b5a1ffe6c6cdba6324b4b21a14323d9387ec13e9dd2a/moffragmentor-0.0.3-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-11-07T18:36:04,747 Found link https://files.pythonhosted.org/packages/b6/7e/f1703f369dc0398952da88718f26a1ecfce8a243dbc7e10baed9dae216bd/moffragmentor-0.0.3.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.3 2022-11-07T18:36:04,747 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/f1/e5/abb17a9f1984b2dea83d3cd5e6da6d5f3a46928669a522d9dc1b6fd34d14/moffragmentor-0.0.4-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-11-07T18:36:04,748 Found link https://files.pythonhosted.org/packages/ab/8f/59ccf17220f7e28c2a12c739f35a574cd824ce854c4236b2543a9d82ef09/moffragmentor-0.0.4.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.4 2022-11-07T18:36:04,748 Fetching project page and analyzing links: https://www.piwheels.org/simple/moffragmentor/ 2022-11-07T18:36:04,748 Getting page https://www.piwheels.org/simple/moffragmentor/ 2022-11-07T18:36:04,749 Found index url https://www.piwheels.org/simple 2022-11-07T18:36:04,912 Fetched page https://www.piwheels.org/simple/moffragmentor/ as text/html 2022-11-07T18:36:04,915 Skipping link: No binaries permitted for moffragmentor: https://www.piwheels.org/simple/moffragmentor/moffragmentor-0.0.3-py3-none-any.whl#sha256=14424c6ace38a59474c1b4f5c8fd5b44bb6ee31b4e9401874ef7527c397693e4 (from https://www.piwheels.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-11-07T18:36:04,915 Skipping link: No binaries permitted for moffragmentor: https://www.piwheels.org/simple/moffragmentor/moffragmentor-0.0.2-py3-none-any.whl#sha256=e45893aefd5587bad967e1b3259390cec5b6342f037546c6c5f9eabad821fc86 (from https://www.piwheels.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-11-07T18:36:04,915 Skipping link: No binaries permitted for moffragmentor: https://www.piwheels.org/simple/moffragmentor/moffragmentor-0.0.1-py3-none-any.whl#sha256=0ee98e0770ecea766454d255bbb57d0ded2236cd724e5ad0631985b59451fbf3 (from https://www.piwheels.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-11-07T18:36:04,915 Skipping link: No binaries permitted for moffragmentor: https://www.piwheels.org/simple/moffragmentor/moffragmentor-0.0.1.dev0-py3-none-any.whl#sha256=d03b489ea0440258068300c664bf6556b027d04ae7ec55191046a21bfade9969 (from https://www.piwheels.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-11-07T18:36:04,916 Skipping link: not a file: https://www.piwheels.org/simple/moffragmentor/ 2022-11-07T18:36:04,916 Skipping link: not a file: https://pypi.org/simple/moffragmentor/ 2022-11-07T18:36:04,934 Given no hashes to check 1 links for project 'moffragmentor': discarding no candidates 2022-11-07T18:36:04,951 Collecting moffragmentor==0.0.4 2022-11-07T18:36:04,953 Created temporary directory: /tmp/pip-unpack-y0iq_khw 2022-11-07T18:36:05,213 Downloading moffragmentor-0.0.4.tar.gz (2.8 MB) 2022-11-07T18:36:05,904 Added moffragmentor==0.0.4 from https://files.pythonhosted.org/packages/ab/8f/59ccf17220f7e28c2a12c739f35a574cd824ce854c4236b2543a9d82ef09/moffragmentor-0.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-sdjvqbvh' 2022-11-07T18:36:05,908 Created temporary directory: /tmp/pip-build-env-80_frrfa 2022-11-07T18:36:05,915 Installing build dependencies: started 2022-11-07T18:36:05,916 Running command pip subprocess to install build dependencies 2022-11-07T18:36:07,099 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-11-07T18:36:07,482 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-07T18:36:07,507 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-07T18:36:09,898 Collecting setuptools>=35.0.2 2022-11-07T18:36:10,027 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.1-py3-none-any.whl (1.2 MB) 2022-11-07T18:36:12,014 Installing collected packages: setuptools 2022-11-07T18:36:14,517 Successfully installed setuptools-65.5.1 2022-11-07T18:36:14,781 Installing build dependencies: finished with status 'done' 2022-11-07T18:36:14,787 Getting requirements to build wheel: started 2022-11-07T18:36:14,788 Running command Getting requirements to build wheel 2022-11-07T18:36:15,617 /tmp/pip-build-env-80_frrfa/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-11-07T18:36:15,618 warnings.warn(msg, warning_class) 2022-11-07T18:36:15,806 running egg_info 2022-11-07T18:36:15,811 writing src/moffragmentor.egg-info/PKG-INFO 2022-11-07T18:36:15,814 writing dependency_links to src/moffragmentor.egg-info/dependency_links.txt 2022-11-07T18:36:15,816 writing entry points to src/moffragmentor.egg-info/entry_points.txt 2022-11-07T18:36:15,818 writing requirements to src/moffragmentor.egg-info/requires.txt 2022-11-07T18:36:15,819 writing top-level names to src/moffragmentor.egg-info/top_level.txt 2022-11-07T18:36:15,841 reading manifest file 'src/moffragmentor.egg-info/SOURCES.txt' 2022-11-07T18:36:15,857 reading manifest template 'MANIFEST.in' 2022-11-07T18:36:15,858 warning: no files found matching 'settings.ini' 2022-11-07T18:36:15,859 warning: no files found matching 'CONTRIBUTING.md' 2022-11-07T18:36:15,860 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-11-07T18:36:15,861 adding license file 'LICENSE' 2022-11-07T18:36:15,867 writing manifest file 'src/moffragmentor.egg-info/SOURCES.txt' 2022-11-07T18:36:15,986 Getting requirements to build wheel: finished with status 'done' 2022-11-07T18:36:15,998 Installing backend dependencies: started 2022-11-07T18:36:15,999 Running command pip subprocess to install backend dependencies 2022-11-07T18:36:17,181 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-11-07T18:36:17,564 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-07T18:36:17,589 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-07T18:36:18,043 Collecting wheel 2022-11-07T18:36:18,078 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.2-py3-none-any.whl (35 kB) 2022-11-07T18:36:19,705 Installing collected packages: wheel 2022-11-07T18:36:19,859 Creating /tmp/pip-build-env-80_frrfa/normal/bin 2022-11-07T18:36:19,861 changing mode of /tmp/pip-build-env-80_frrfa/normal/bin/wheel to 755 2022-11-07T18:36:19,875 Successfully installed wheel-0.38.2 2022-11-07T18:36:20,095 Installing backend dependencies: finished with status 'done' 2022-11-07T18:36:20,098 Created temporary directory: /tmp/pip-modern-metadata-v9el6gnx 2022-11-07T18:36:20,101 Preparing metadata (pyproject.toml): started 2022-11-07T18:36:20,102 Running command Preparing metadata (pyproject.toml) 2022-11-07T18:36:20,948 /tmp/pip-build-env-80_frrfa/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-11-07T18:36:20,948 warnings.warn(msg, warning_class) 2022-11-07T18:36:20,995 running dist_info 2022-11-07T18:36:21,018 creating /tmp/pip-modern-metadata-v9el6gnx/moffragmentor.egg-info 2022-11-07T18:36:21,022 writing /tmp/pip-modern-metadata-v9el6gnx/moffragmentor.egg-info/PKG-INFO 2022-11-07T18:36:21,026 writing dependency_links to /tmp/pip-modern-metadata-v9el6gnx/moffragmentor.egg-info/dependency_links.txt 2022-11-07T18:36:21,028 writing entry points to /tmp/pip-modern-metadata-v9el6gnx/moffragmentor.egg-info/entry_points.txt 2022-11-07T18:36:21,030 writing requirements to /tmp/pip-modern-metadata-v9el6gnx/moffragmentor.egg-info/requires.txt 2022-11-07T18:36:21,031 writing top-level names to /tmp/pip-modern-metadata-v9el6gnx/moffragmentor.egg-info/top_level.txt 2022-11-07T18:36:21,032 writing manifest file '/tmp/pip-modern-metadata-v9el6gnx/moffragmentor.egg-info/SOURCES.txt' 2022-11-07T18:36:21,053 reading manifest file '/tmp/pip-modern-metadata-v9el6gnx/moffragmentor.egg-info/SOURCES.txt' 2022-11-07T18:36:21,057 reading manifest template 'MANIFEST.in' 2022-11-07T18:36:21,057 warning: no files found matching 'settings.ini' 2022-11-07T18:36:21,058 warning: no files found matching 'CONTRIBUTING.md' 2022-11-07T18:36:21,059 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-11-07T18:36:21,060 adding license file 'LICENSE' 2022-11-07T18:36:21,063 writing manifest file '/tmp/pip-modern-metadata-v9el6gnx/moffragmentor.egg-info/SOURCES.txt' 2022-11-07T18:36:21,064 creating '/tmp/pip-modern-metadata-v9el6gnx/moffragmentor-0.0.4.dist-info' 2022-11-07T18:36:21,304 Preparing metadata (pyproject.toml): finished with status 'done' 2022-11-07T18:36:21,312 Source in /tmp/pip-wheel-61s8vyao/moffragmentor_79bfc99e6297437bb35ef1c30bdc46fc has version 0.0.4, which satisfies requirement moffragmentor==0.0.4 from https://files.pythonhosted.org/packages/ab/8f/59ccf17220f7e28c2a12c739f35a574cd824ce854c4236b2543a9d82ef09/moffragmentor-0.0.4.tar.gz 2022-11-07T18:36:21,313 Removed moffragmentor==0.0.4 from https://files.pythonhosted.org/packages/ab/8f/59ccf17220f7e28c2a12c739f35a574cd824ce854c4236b2543a9d82ef09/moffragmentor-0.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-sdjvqbvh' 2022-11-07T18:36:21,320 Created temporary directory: /tmp/pip-unpack-7v_z52wi 2022-11-07T18:36:21,321 Building wheels for collected packages: moffragmentor 2022-11-07T18:36:21,326 Created temporary directory: /tmp/pip-wheel-cehp5wf8 2022-11-07T18:36:21,326 Destination directory: /tmp/pip-wheel-cehp5wf8 2022-11-07T18:36:21,329 Building wheel for moffragmentor (pyproject.toml): started 2022-11-07T18:36:21,330 Running command Building wheel for moffragmentor (pyproject.toml) 2022-11-07T18:36:22,137 /tmp/pip-build-env-80_frrfa/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-11-07T18:36:22,138 warnings.warn(msg, warning_class) 2022-11-07T18:36:22,217 running bdist_wheel 2022-11-07T18:36:22,251 running build 2022-11-07T18:36:22,251 running build_py 2022-11-07T18:36:22,258 creating build 2022-11-07T18:36:22,258 creating build/lib 2022-11-07T18:36:22,259 creating build/lib/moffragmentor 2022-11-07T18:36:22,260 copying src/moffragmentor/__init__.py -> build/lib/moffragmentor 2022-11-07T18:36:22,262 copying src/moffragmentor/mof.py -> build/lib/moffragmentor 2022-11-07T18:36:22,265 copying src/moffragmentor/version.py -> build/lib/moffragmentor 2022-11-07T18:36:22,267 copying src/moffragmentor/net.py -> build/lib/moffragmentor 2022-11-07T18:36:22,270 creating build/lib/moffragmentor/cli 2022-11-07T18:36:22,271 copying src/moffragmentor/cli/__init__.py -> build/lib/moffragmentor/cli 2022-11-07T18:36:22,274 creating build/lib/moffragmentor/utils 2022-11-07T18:36:22,274 copying src/moffragmentor/utils/__init__.py -> build/lib/moffragmentor/utils 2022-11-07T18:36:22,277 copying src/moffragmentor/utils/systre.py -> build/lib/moffragmentor/utils 2022-11-07T18:36:22,279 copying src/moffragmentor/utils/mol_compare.py -> build/lib/moffragmentor/utils 2022-11-07T18:36:22,281 copying src/moffragmentor/utils/errors.py -> build/lib/moffragmentor/utils 2022-11-07T18:36:22,283 copying src/moffragmentor/utils/periodic_graph.py -> build/lib/moffragmentor/utils 2022-11-07T18:36:22,286 creating build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,287 copying src/moffragmentor/fragmentor/branching_points.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,289 copying src/moffragmentor/fragmentor/splitter.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,291 copying src/moffragmentor/fragmentor/_graphsearch.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,294 copying src/moffragmentor/fragmentor/__init__.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,296 copying src/moffragmentor/fragmentor/_no_core_linker.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,298 copying src/moffragmentor/fragmentor/molfromgraph.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,300 copying src/moffragmentor/fragmentor/nodelocator.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,303 copying src/moffragmentor/fragmentor/filter.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,305 copying src/moffragmentor/fragmentor/solventlocator.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,307 copying src/moffragmentor/fragmentor/linkerlocator.py -> build/lib/moffragmentor/fragmentor 2022-11-07T18:36:22,310 creating build/lib/moffragmentor/molecule 2022-11-07T18:36:22,311 copying src/moffragmentor/molecule/nonsbumolecule.py -> build/lib/moffragmentor/molecule 2022-11-07T18:36:22,313 copying src/moffragmentor/molecule/__init__.py -> build/lib/moffragmentor/molecule 2022-11-07T18:36:22,315 copying src/moffragmentor/molecule/nonsbumoleculecollection.py -> build/lib/moffragmentor/molecule 2022-11-07T18:36:22,317 creating build/lib/moffragmentor/harvester 2022-11-07T18:36:22,318 copying src/moffragmentor/harvester/__init__.py -> build/lib/moffragmentor/harvester 2022-11-07T18:36:22,320 copying src/moffragmentor/harvester/harvest_building_blocks.py -> build/lib/moffragmentor/harvester 2022-11-07T18:36:22,323 creating build/lib/moffragmentor/sbu 2022-11-07T18:36:22,324 copying src/moffragmentor/sbu/sbu.py -> build/lib/moffragmentor/sbu 2022-11-07T18:36:22,326 copying src/moffragmentor/sbu/__init__.py -> build/lib/moffragmentor/sbu 2022-11-07T18:36:22,328 copying src/moffragmentor/sbu/node.py -> build/lib/moffragmentor/sbu 2022-11-07T18:36:22,330 copying src/moffragmentor/sbu/nodecollection.py -> build/lib/moffragmentor/sbu 2022-11-07T18:36:22,332 copying src/moffragmentor/sbu/linker.py -> build/lib/moffragmentor/sbu 2022-11-07T18:36:22,334 copying src/moffragmentor/sbu/sbucollection.py -> build/lib/moffragmentor/sbu 2022-11-07T18:36:22,336 copying src/moffragmentor/sbu/linkercollection.py -> build/lib/moffragmentor/sbu 2022-11-07T18:36:22,338 creating build/lib/moffragmentor/descriptors 2022-11-07T18:36:22,339 copying src/moffragmentor/descriptors/__init__.py -> build/lib/moffragmentor/descriptors 2022-11-07T18:36:22,341 copying src/moffragmentor/descriptors/sbu_dimensionality.py -> build/lib/moffragmentor/descriptors 2022-11-07T18:36:22,342 running egg_info 2022-11-07T18:36:22,361 writing src/moffragmentor.egg-info/PKG-INFO 2022-11-07T18:36:22,363 writing dependency_links to src/moffragmentor.egg-info/dependency_links.txt 2022-11-07T18:36:22,365 writing entry points to src/moffragmentor.egg-info/entry_points.txt 2022-11-07T18:36:22,366 writing requirements to src/moffragmentor.egg-info/requires.txt 2022-11-07T18:36:22,367 writing top-level names to src/moffragmentor.egg-info/top_level.txt 2022-11-07T18:36:22,379 reading manifest file 'src/moffragmentor.egg-info/SOURCES.txt' 2022-11-07T18:36:22,397 reading manifest template 'MANIFEST.in' 2022-11-07T18:36:22,397 warning: no files found matching 'settings.ini' 2022-11-07T18:36:22,397 warning: no files found matching 'CONTRIBUTING.md' 2022-11-07T18:36:22,398 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-11-07T18:36:22,400 adding license file 'LICENSE' 2022-11-07T18:36:22,406 writing manifest file 'src/moffragmentor.egg-info/SOURCES.txt' 2022-11-07T18:36:22,410 /tmp/pip-build-env-80_frrfa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'moffragmentor.utils.data' as data is deprecated, please list it in `packages`. 2022-11-07T18:36:22,410 !! 2022-11-07T18:36:22,411 ############################ 2022-11-07T18:36:22,411 # Package would be ignored # 2022-11-07T18:36:22,411 ############################ 2022-11-07T18:36:22,411 Python recognizes 'moffragmentor.utils.data' as an importable package, 2022-11-07T18:36:22,411 but it is not listed in the `packages` configuration of setuptools. 2022-11-07T18:36:22,411 'moffragmentor.utils.data' has been automatically added to the distribution only 2022-11-07T18:36:22,412 because it may contain data files, but this behavior is likely to change 2022-11-07T18:36:22,412 in future versions of setuptools (and therefore is considered deprecated). 2022-11-07T18:36:22,412 Please make sure that 'moffragmentor.utils.data' is included as a package by using 2022-11-07T18:36:22,412 the `packages` configuration field or the proper discovery methods 2022-11-07T18:36:22,412 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-07T18:36:22,412 instead of `find_packages(...)`/`find:`). 2022-11-07T18:36:22,413 You can read more about "package discovery" and "data files" on setuptools 2022-11-07T18:36:22,413 documentation page. 2022-11-07T18:36:22,413 !! 2022-11-07T18:36:22,413 check.warn(importable) 2022-11-07T18:36:22,414 copying src/moffragmentor/Systre-19.6.0.jar -> build/lib/moffragmentor 2022-11-07T18:36:22,451 copying src/moffragmentor/systre.license -> build/lib/moffragmentor 2022-11-07T18:36:22,454 creating build/lib/moffragmentor/utils/data 2022-11-07T18:36:22,455 copying src/moffragmentor/utils/data/atom_typing_radii.yml -> build/lib/moffragmentor/utils/data 2022-11-07T18:36:22,460 copying src/moffragmentor/utils/data/li_radii.yml -> build/lib/moffragmentor/utils/data 2022-11-07T18:36:22,467 copying src/moffragmentor/utils/data/tuned_vesta.yml -> build/lib/moffragmentor/utils/data 2022-11-07T18:36:22,491 installing to build/bdist.linux-armv7l/wheel 2022-11-07T18:36:22,491 running install 2022-11-07T18:36:22,516 running install_lib 2022-11-07T18:36:22,523 creating build/bdist.linux-armv7l 2022-11-07T18:36:22,523 creating build/bdist.linux-armv7l/wheel 2022-11-07T18:36:22,525 creating build/bdist.linux-armv7l/wheel/moffragmentor 2022-11-07T18:36:22,526 copying build/lib/moffragmentor/systre.license -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-11-07T18:36:22,529 copying build/lib/moffragmentor/Systre-19.6.0.jar -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-11-07T18:36:22,565 copying build/lib/moffragmentor/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-11-07T18:36:22,567 creating build/bdist.linux-armv7l/wheel/moffragmentor/cli 2022-11-07T18:36:22,568 copying build/lib/moffragmentor/cli/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/cli 2022-11-07T18:36:22,571 creating build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-11-07T18:36:22,571 copying build/lib/moffragmentor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-11-07T18:36:22,574 copying build/lib/moffragmentor/utils/systre.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-11-07T18:36:22,577 copying build/lib/moffragmentor/utils/mol_compare.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-11-07T18:36:22,578 copying build/lib/moffragmentor/utils/errors.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-11-07T18:36:22,580 copying build/lib/moffragmentor/utils/periodic_graph.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-11-07T18:36:22,583 creating build/bdist.linux-armv7l/wheel/moffragmentor/utils/data 2022-11-07T18:36:22,583 copying build/lib/moffragmentor/utils/data/tuned_vesta.yml -> build/bdist.linux-armv7l/wheel/moffragmentor/utils/data 2022-11-07T18:36:22,586 copying build/lib/moffragmentor/utils/data/atom_typing_radii.yml -> build/bdist.linux-armv7l/wheel/moffragmentor/utils/data 2022-11-07T18:36:22,591 copying build/lib/moffragmentor/utils/data/li_radii.yml -> build/bdist.linux-armv7l/wheel/moffragmentor/utils/data 2022-11-07T18:36:22,599 creating build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,600 copying build/lib/moffragmentor/fragmentor/branching_points.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,602 copying build/lib/moffragmentor/fragmentor/splitter.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,605 copying build/lib/moffragmentor/fragmentor/_graphsearch.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,607 copying build/lib/moffragmentor/fragmentor/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,609 copying build/lib/moffragmentor/fragmentor/_no_core_linker.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,611 copying build/lib/moffragmentor/fragmentor/molfromgraph.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,613 copying build/lib/moffragmentor/fragmentor/nodelocator.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,616 copying build/lib/moffragmentor/fragmentor/filter.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,618 copying build/lib/moffragmentor/fragmentor/solventlocator.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,620 copying build/lib/moffragmentor/fragmentor/linkerlocator.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-11-07T18:36:22,623 creating build/bdist.linux-armv7l/wheel/moffragmentor/molecule 2022-11-07T18:36:22,624 copying build/lib/moffragmentor/molecule/nonsbumolecule.py -> build/bdist.linux-armv7l/wheel/moffragmentor/molecule 2022-11-07T18:36:22,626 copying build/lib/moffragmentor/molecule/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/molecule 2022-11-07T18:36:22,628 copying build/lib/moffragmentor/molecule/nonsbumoleculecollection.py -> build/bdist.linux-armv7l/wheel/moffragmentor/molecule 2022-11-07T18:36:22,630 copying build/lib/moffragmentor/mof.py -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-11-07T18:36:22,632 copying build/lib/moffragmentor/version.py -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-11-07T18:36:22,634 creating build/bdist.linux-armv7l/wheel/moffragmentor/harvester 2022-11-07T18:36:22,635 copying build/lib/moffragmentor/harvester/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/harvester 2022-11-07T18:36:22,637 copying build/lib/moffragmentor/harvester/harvest_building_blocks.py -> build/bdist.linux-armv7l/wheel/moffragmentor/harvester 2022-11-07T18:36:22,640 creating build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-11-07T18:36:22,641 copying build/lib/moffragmentor/sbu/sbu.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-11-07T18:36:22,644 copying build/lib/moffragmentor/sbu/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-11-07T18:36:22,646 copying build/lib/moffragmentor/sbu/node.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-11-07T18:36:22,648 copying build/lib/moffragmentor/sbu/nodecollection.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-11-07T18:36:22,650 copying build/lib/moffragmentor/sbu/linker.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-11-07T18:36:22,652 copying build/lib/moffragmentor/sbu/sbucollection.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-11-07T18:36:22,654 copying build/lib/moffragmentor/sbu/linkercollection.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-11-07T18:36:22,656 copying build/lib/moffragmentor/net.py -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-11-07T18:36:22,659 creating build/bdist.linux-armv7l/wheel/moffragmentor/descriptors 2022-11-07T18:36:22,660 copying build/lib/moffragmentor/descriptors/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/descriptors 2022-11-07T18:36:22,662 copying build/lib/moffragmentor/descriptors/sbu_dimensionality.py -> build/bdist.linux-armv7l/wheel/moffragmentor/descriptors 2022-11-07T18:36:22,663 running install_egg_info 2022-11-07T18:36:22,675 Copying src/moffragmentor.egg-info to build/bdist.linux-armv7l/wheel/moffragmentor-0.0.4-py3.9.egg-info 2022-11-07T18:36:22,690 running install_scripts 2022-11-07T18:36:22,799 creating build/bdist.linux-armv7l/wheel/moffragmentor-0.0.4.dist-info/WHEEL 2022-11-07T18:36:22,801 creating '/tmp/pip-wheel-cehp5wf8/tmpqmv46qdy/moffragmentor-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-07T18:36:23,028 adding 'moffragmentor/Systre-19.6.0.jar' 2022-11-07T18:36:23,039 adding 'moffragmentor/__init__.py' 2022-11-07T18:36:23,042 adding 'moffragmentor/mof.py' 2022-11-07T18:36:23,045 adding 'moffragmentor/net.py' 2022-11-07T18:36:23,048 adding 'moffragmentor/systre.license' 2022-11-07T18:36:23,049 adding 'moffragmentor/version.py' 2022-11-07T18:36:23,051 adding 'moffragmentor/cli/__init__.py' 2022-11-07T18:36:23,053 adding 'moffragmentor/descriptors/__init__.py' 2022-11-07T18:36:23,054 adding 'moffragmentor/descriptors/sbu_dimensionality.py' 2022-11-07T18:36:23,056 adding 'moffragmentor/fragmentor/__init__.py' 2022-11-07T18:36:23,058 adding 'moffragmentor/fragmentor/_graphsearch.py' 2022-11-07T18:36:23,060 adding 'moffragmentor/fragmentor/_no_core_linker.py' 2022-11-07T18:36:23,062 adding 'moffragmentor/fragmentor/branching_points.py' 2022-11-07T18:36:23,063 adding 'moffragmentor/fragmentor/filter.py' 2022-11-07T18:36:23,065 adding 'moffragmentor/fragmentor/linkerlocator.py' 2022-11-07T18:36:23,066 adding 'moffragmentor/fragmentor/molfromgraph.py' 2022-11-07T18:36:23,069 adding 'moffragmentor/fragmentor/nodelocator.py' 2022-11-07T18:36:23,070 adding 'moffragmentor/fragmentor/solventlocator.py' 2022-11-07T18:36:23,072 adding 'moffragmentor/fragmentor/splitter.py' 2022-11-07T18:36:23,074 adding 'moffragmentor/harvester/__init__.py' 2022-11-07T18:36:23,076 adding 'moffragmentor/harvester/harvest_building_blocks.py' 2022-11-07T18:36:23,077 adding 'moffragmentor/molecule/__init__.py' 2022-11-07T18:36:23,079 adding 'moffragmentor/molecule/nonsbumolecule.py' 2022-11-07T18:36:23,080 adding 'moffragmentor/molecule/nonsbumoleculecollection.py' 2022-11-07T18:36:23,082 adding 'moffragmentor/sbu/__init__.py' 2022-11-07T18:36:23,084 adding 'moffragmentor/sbu/linker.py' 2022-11-07T18:36:23,085 adding 'moffragmentor/sbu/linkercollection.py' 2022-11-07T18:36:23,087 adding 'moffragmentor/sbu/node.py' 2022-11-07T18:36:23,088 adding 'moffragmentor/sbu/nodecollection.py' 2022-11-07T18:36:23,090 adding 'moffragmentor/sbu/sbu.py' 2022-11-07T18:36:23,092 adding 'moffragmentor/sbu/sbucollection.py' 2022-11-07T18:36:23,095 adding 'moffragmentor/utils/__init__.py' 2022-11-07T18:36:23,096 adding 'moffragmentor/utils/errors.py' 2022-11-07T18:36:23,097 adding 'moffragmentor/utils/mol_compare.py' 2022-11-07T18:36:23,099 adding 'moffragmentor/utils/periodic_graph.py' 2022-11-07T18:36:23,100 adding 'moffragmentor/utils/systre.py' 2022-11-07T18:36:23,113 adding 'moffragmentor/utils/data/atom_typing_radii.yml' 2022-11-07T18:36:23,138 adding 'moffragmentor/utils/data/li_radii.yml' 2022-11-07T18:36:23,143 adding 'moffragmentor/utils/data/tuned_vesta.yml' 2022-11-07T18:36:23,146 adding 'moffragmentor-0.0.4.dist-info/LICENSE' 2022-11-07T18:36:23,147 adding 'moffragmentor-0.0.4.dist-info/METADATA' 2022-11-07T18:36:23,148 adding 'moffragmentor-0.0.4.dist-info/WHEEL' 2022-11-07T18:36:23,149 adding 'moffragmentor-0.0.4.dist-info/entry_points.txt' 2022-11-07T18:36:23,150 adding 'moffragmentor-0.0.4.dist-info/top_level.txt' 2022-11-07T18:36:23,152 adding 'moffragmentor-0.0.4.dist-info/RECORD' 2022-11-07T18:36:23,179 removing build/bdist.linux-armv7l/wheel 2022-11-07T18:36:23,331 Building wheel for moffragmentor (pyproject.toml): finished with status 'done' 2022-11-07T18:36:23,378 Created wheel for moffragmentor: filename=moffragmentor-0.0.4-py3-none-any.whl size=1669048 sha256=96389accb0d19eb3f53c256c8366c152a6dc22439329feef79eaefcee948e206 2022-11-07T18:36:23,379 Stored in directory: /tmp/pip-ephem-wheel-cache-9pnoy3gy/wheels/0a/d5/0c/e25163a42a6ad2b07fa727748eaa090604488e56f180b958ec 2022-11-07T18:36:23,394 Successfully built moffragmentor 2022-11-07T18:36:23,446 Removed build tracker: '/tmp/pip-build-tracker-sdjvqbvh'