2022-11-08T22:34:25,459 Created temporary directory: /tmp/pip-ephem-wheel-cache-atbk6lr8 2022-11-08T22:34:25,461 Created temporary directory: /tmp/pip-build-tracker-yh06a4cd 2022-11-08T22:34:25,461 Initialized build tracking at /tmp/pip-build-tracker-yh06a4cd 2022-11-08T22:34:25,462 Created build tracker: /tmp/pip-build-tracker-yh06a4cd 2022-11-08T22:34:25,462 Entered build tracker: /tmp/pip-build-tracker-yh06a4cd 2022-11-08T22:34:25,462 Created temporary directory: /tmp/pip-wheel-z6dnntuu 2022-11-08T22:34:25,465 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-08T22:34:25,468 Created temporary directory: /tmp/pip-ephem-wheel-cache-pg4s6u8k 2022-11-08T22:34:25,496 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-08T22:34:25,499 2 location(s) to search for versions of pysam: 2022-11-08T22:34:25,499 * https://pypi.org/simple/pysam/ 2022-11-08T22:34:25,499 * https://www.piwheels.org/simple/pysam/ 2022-11-08T22:34:25,499 Fetching project page and analyzing links: https://pypi.org/simple/pysam/ 2022-11-08T22:34:25,500 Getting page https://pypi.org/simple/pysam/ 2022-11-08T22:34:25,501 Found index url https://pypi.org/simple 2022-11-08T22:34:25,567 Fetched page https://pypi.org/simple/pysam/ as application/vnd.pypi.simple.v1+json 2022-11-08T22:34:25,608 Found link https://files.pythonhosted.org/packages/7f/ce/e9405fcf72096f78dc7d75e8ce2a1cd907e1b4a9af0dbf1fc4dac5770f81/pysam-0.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4 2022-11-08T22:34:25,608 Found link https://files.pythonhosted.org/packages/df/58/508dc40f603551d34b815560d52d9532dd243f1a8c35d9317ebff15d27e7/pysam-0.4.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4.1 2022-11-08T22:34:25,608 Found link https://files.pythonhosted.org/packages/64/7b/09ff2b61c7600a5aefd7ee0c37cec60140d31f8194d237e1d63c4d457931/pysam-0.7.6.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.6 2022-11-08T22:34:25,609 Found link https://files.pythonhosted.org/packages/46/b5/877f40fbb84f588b69b4afcb1409b8bdeed7ef980113d3e8ef69bab26e09/pysam-0.7.7.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.7 2022-11-08T22:34:25,609 Found link https://files.pythonhosted.org/packages/b5/0f/436d15f08096dd9869a956e502fd119c15efbd84896aa53df50c7c6c0e13/pysam-0.7.8.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.8 2022-11-08T22:34:25,609 Found link https://files.pythonhosted.org/packages/a4/ea/901d47d5621f15c05079dcf45e746a77bab21dbf0f9ce272993a3ca3a367/pysam-0.8.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.0 2022-11-08T22:34:25,610 Found link https://files.pythonhosted.org/packages/0e/4a/d1625792b2fd3a172d4bad096ab1559bcb7a81fa5fa6f9bc3937de23340d/pysam-0.8.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.1 2022-11-08T22:34:25,610 Found link https://files.pythonhosted.org/packages/10/42/7f51e1ad0c283e1d6bf826d3a193fa0644e675c9c6d42263b69fefc3b527/pysam-0.8.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2 2022-11-08T22:34:25,610 Found link https://files.pythonhosted.org/packages/07/6b/3f48a2f05fbde46f2c52fc5f9adc15d928951cd54035109d553e14b774c7/pysam-0.8.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2.1 2022-11-08T22:34:25,610 Found link https://files.pythonhosted.org/packages/f9/b9/8cfad46376335001f0cbbc46bf402fa107b0e8af8fe9e4192702b251f628/pysam-0.8.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.3 2022-11-08T22:34:25,611 Found link https://files.pythonhosted.org/packages/27/89/bf8c44d0bfe9d0cadab062893806994c168c9f490f67370fc56d6e8ba224/pysam-0.8.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.4 2022-11-08T22:34:25,611 Found link https://files.pythonhosted.org/packages/0f/37/fa514cb2163997551e95f63ec12f7bec7b640a601456f1d0ab3ab900c05f/pysam-0.9.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.0 2022-11-08T22:34:25,611 Found link https://files.pythonhosted.org/packages/40/15/20b22dc3d017ec123e533d062b982b111b0214168905de3221b5caf5f766/pysam-0.9.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1 2022-11-08T22:34:25,612 Found link https://files.pythonhosted.org/packages/f7/ae/59341d9fd2bed1cc32225115fc3f866a0e4e020f31073d698785c956360f/pysam-0.9.1.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.1 2022-11-08T22:34:25,612 Found link https://files.pythonhosted.org/packages/76/62/908776209238850eca22e7139cc23ce2ba14b2941ceb438b1572f84e8d82/pysam-0.9.1.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.2 2022-11-08T22:34:25,612 Found link https://files.pythonhosted.org/packages/e7/e9/db49c8bd39673c1f48200f69ccc34784016d664136f36e03a090411a95fc/pysam-0.9.1.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.3 2022-11-08T22:34:25,612 Found link https://files.pythonhosted.org/packages/de/03/02934438b204565bc5231f38a11da840a3c3e4b2beac8c8770d675770668/pysam-0.9.1.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.4 2022-11-08T22:34:25,613 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/5a/0b25d6d734e1797c7ce06442ff6714af53cb1c8cd6c6cfd1a32df4587e33/pysam-0.10.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,613 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/72/d2/d106b2fc317e838f7eea7140c8d0ad4df4fde6a456a526649a58397f638c/pysam-0.10.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,613 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0c/55/d775726477bfe55e06c88701c8cf9a4b2596a877b09e562551c00cf4a931/pysam-0.10.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,613 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ea/01735cceef15296bad16873979ae6848efebbbc9ab20eba244d532846dbf/pysam-0.10.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,614 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/09/526378006226fb39eb54d9935c407c9b3c0302792c89e50d6b4f14d6f4b8/pysam-0.10.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,614 Found link https://files.pythonhosted.org/packages/87/8e/d2d8238558970df37c7aa01ddec63057a98042334e939b4c1c69cb9a2504/pysam-0.10.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.10.0 2022-11-08T22:34:25,614 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/93/f5/bfca0394bb90cc5993b7595d7c6aeebfc43dce8bf97394df4bfba9141caf/pysam-0.11-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,614 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/ff/7e0c6169883a26cee912ce25ef98893c13966cce1064fd6136b53e28d365/pysam-0.11-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,614 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/ba/91614d3e18818011decdb5cda8991cea11330d274399492822fb50b7478e/pysam-0.11-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,615 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/6f/2b166df4d7d55e2f69551b85ec2bba01048e5dc2307163ab8ad7d694bde1/pysam-0.11-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,615 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/28/cd6fde9c19444f779130e27195b4c1d9d896266e4e0b0bc8d515c031854f/pysam-0.11-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,615 Found link https://files.pythonhosted.org/packages/f4/bb/c5fcaace8857bdf8a430de41b5298c602fdce4917494f7a941c038e5861a/pysam-0.11.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11 2022-11-08T22:34:25,615 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/81/01/2304e5367c566f538cf64bad1bd41ec41e47d8aeefd197a209c8c1cf14fa/pysam-0.11.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,616 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/b3/b7ea200fc6e16af0cd2397659a2a2dd383f4ea71d2e0948f7215e73fb6a6/pysam-0.11.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,616 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/00/0d55946c0b1c781caee096ef9c4e9e54047ecf897874bf791c5ea8351df3/pysam-0.11.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,616 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/2a/b5e9e88b0d5097fa45f0832a05acfb39879679a087e55145198d47bb6099/pysam-0.11.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,616 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/0e/967ed910f8ce74ed5ea6b7a4775a86d05205963bf927a8452604ad277913/pysam-0.11.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,616 Found link https://files.pythonhosted.org/packages/be/70/16cdd6c5ef799b2db2af4fd5f9720df0f3206b0a06ed40e03692aa80ae25/pysam-0.11.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.1 2022-11-08T22:34:25,617 Found link https://files.pythonhosted.org/packages/89/d9/52995323a3a15e14f2cd579a49f953c804b36a1a7d7dc09a08b7de3591d2/pysam-0.11.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2 2022-11-08T22:34:25,617 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/23/12b4829036ce49ec068c61a28057029dd19a6a1a29855dff0efb785e0d12/pysam-0.11.2.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,617 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/d8/daa0986a5049b66b4ab2fc8093a17a961cedc75d1a39e1a4821d19f4f13f/pysam-0.11.2.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,617 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/5f/254cec485fedd72269c061262eb2bc36f8a438a5badb78c8582e46905623/pysam-0.11.2.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,617 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/cc/47ae71c341bd822dfeec2148f6521c1bba690e4581814114519b3cc611d4/pysam-0.11.2.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,618 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/b0/4acf13c3b125db232e8ed93fec3e5b3a90abe47fd27aaacc15c9e03caf6f/pysam-0.11.2.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,618 Found link https://files.pythonhosted.org/packages/4b/d2/152284e08c551471c7a7b9b23b4d0916637705ee4f979314ca1750b37c83/pysam-0.11.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.1 2022-11-08T22:34:25,618 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/dd/2a9226b90d8c98482209617c2376434e1c19da4981de49c78af0e763988f/pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,618 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/9d/d30859cf5a7555719e9b28d34f61bbd4ef0e811fb8a857a986ee9913b79a/pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,619 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/34/b0a7ece94bf7af7d482282ccd8430fe291147960d900b514b7aa606c9170/pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,619 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9d/a0/2bc18552108cf9605e0ffa7c31673bc56653c0cd7521730a2d5eeb06939f/pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,619 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/c0/18436ad1db0ed38c997b7fda42db8b6489c50abcb321320015de12bdd164/pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,619 Found link https://files.pythonhosted.org/packages/a4/1b/b6dfd92aea876647d20d9a8bd8618e4f2af6300539426be83c8bb0912d6f/pysam-0.11.2.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.2 2022-11-08T22:34:25,619 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/be/3c/9c0d31f4baa506057e781641325f52f709ca4fe777065e39be08e690752b/pysam-0.12-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,620 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5e/f1/28f7e3df4941ac01c2c1794b1009000fad81cf026da6c04e223e5e86e6ad/pysam-0.12-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,620 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e7/a7/9225250a464b91caba6c88e82b59755e07a30aa803085febbb923655d2d5/pysam-0.12-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,620 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c6/ce/08728c6f395b46cdb75b79d4c554184b624fbe344a6a99b62b1a7f58a5df/pysam-0.12-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,620 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/bd/a741af36309bfbd8d40e5c5c9fc9f2ca3c7a86c2d1ff7c2563a81d851a44/pysam-0.12-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,621 Found link https://files.pythonhosted.org/packages/0f/e0/19046ae89307ddeadfa8dabc305a9cfce67865de06b762057edd84bc0fd6/pysam-0.12.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12 2022-11-08T22:34:25,621 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/bc/9d27138acddecbeca3a010691e71e89ad02e5c6dc3a38ca9d8cc94c92295/pysam-0.12.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,621 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/d9/7a508464feb23b750ba0d56e10e014f0d1a8cd6a4e8fe3887c75affa5fa9/pysam-0.12.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,621 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/d5/4b67f2767fc352d8246c3eed4ce0f5d61fdbf6cef6e5b57d433ed63f7ed8/pysam-0.12.0.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,622 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/d9/91db21a596a3a896365a90c5b44c6722b4e0acfd5e90c52071175e77aad4/pysam-0.12.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,622 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/50/28/f3a3989a9a34fa6c84fdba3d80b4b1624b2c253d7906a13638152b20555b/pysam-0.12.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,622 Found link https://files.pythonhosted.org/packages/b9/98/d98b250f98a6b91df71a03083219bec786cdda5408f77997f8ad81d06058/pysam-0.12.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12.0.1 2022-11-08T22:34:25,622 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/cd/676a08a4bd77fd21716add76f946235780a5673c75c7408b2449db2dde5a/pysam-0.13-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,622 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/59/7e/55048651e80ca7ebbed41489ec53da863a500d536fbff5884175e81b40c1/pysam-0.13-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,623 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fc/63/4a758298dafa37a719540fd55c4e76de15e3ad6be0201c9e0e6ed59b3d8c/pysam-0.13-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,623 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8b/08/8f6ea307458945f9e5db70e460b7902f210f08646af35800372907095f06/pysam-0.13-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,623 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/dd/5f41722f95749537e2f5a84414a4b08fc4e14d39552df8171e375129edf5/pysam-0.13-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,623 Found link https://files.pythonhosted.org/packages/31/17/31d317006a74941d2caddac97c5106601fe4da467653d0f061702e9ead95/pysam-0.13.tar.gz (from https://pypi.org/simple/pysam/), version: 0.13 2022-11-08T22:34:25,623 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c9/0b/ca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5/pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,624 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/ff/a7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a/pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,624 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/51/c1/474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20/pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,624 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/53/6e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24/pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,624 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/96/7b/845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8/pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,624 Found link https://files.pythonhosted.org/packages/d8/78/8b3fad13d3bd8787c0d922056061727c2a0cf91c45a836c98342594dd293/pysam-0.14.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14 2022-11-08T22:34:25,625 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cd/9b/2627df910452b49bef57dd5ce720832d49faadea3e3d86f940f168b807b4/pysam-0.14.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,625 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/96/a9b21863c30c00bde76ab9bd3b538ed9f4d872f6767217c930cd0246fd21/pysam-0.14.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,625 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a0/ba/95ee9ea7921ae153c51880ffe047269a7ccf396442214f4fc965cc66ea68/pysam-0.14.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,625 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/a9/d74aa164efb28ce328cd4890b0182ccdf2e781c192910072717c965765c6/pysam-0.14.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,626 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/97/bb/65b3a258ffca71251ae1d07c1d3eb54448da31ee74106e49e2f251f066d4/pysam-0.14.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,626 Found link https://files.pythonhosted.org/packages/fc/9b/4bb8d016406dcff47e2866e14d3dcb10741ec3920649e8c521996830944f/pysam-0.14.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14.1 2022-11-08T22:34:25,626 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2f/d8/57e6c36c4069e3b240115b3cb98bf1d5a2989d76815aff14fb0149d27781/pysam-0.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,626 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dc/af/c14708a4d43effb82bd14302e41e9fa818b724ada9b9d89283319a22a585/pysam-0.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,626 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/77/2e258a5ff090226516c4338d682c6f8ed13e5be2ac7a67e6b452b04b0237/pysam-0.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,627 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/5d/d96d3662647a3cf33b1e3fe6d21eaecd00f47d39edbe4cd85486639cb603/pysam-0.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,627 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/da/6a0cc06c65acaea0b8830e632712d53fa8bc88ea19096038b3bef22b25da/pysam-0.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,627 Found link https://files.pythonhosted.org/packages/f9/c4/f1b6963a05f415aa69c8efd64ebe460d56d03ecc75db70b0e8606b589ade/pysam-0.15.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.0 2022-11-08T22:34:25,627 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b4/d8/9afa92bd4b48ebd6896d22bb7cdaeb5aa4577983333df5e99160c62fb6ff/pysam-0.15.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,627 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/66/6b/f1a4f142d884b6e1cda6542bf4b89ce88ad8465197511d83994f2cf6484d/pysam-0.15.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,628 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/5f/030c774b44932d2e23d773558679d553fb31dd5ecdb094b8e26b316de784/pysam-0.15.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,628 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/37/27/7d7ce83c0acac59b95849f2fb678484147f1e1393162ee0975cb7f84e53c/pysam-0.15.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,628 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/f4/e12faf1618e977a868fe66d40288fc3dd989a10cc4c77603da33a7634a18/pysam-0.15.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,628 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1e/04/3e22a04ade5291e968b3f3e9195929574221d86fd8982a4976a40b045060/pysam-0.15.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,628 Found link https://files.pythonhosted.org/packages/73/59/c319f1bde3019bbce4583cecb12b9e3e52ffcfbe2c96d8b1fb131c0d4fb7/pysam-0.15.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.1 2022-11-08T22:34:25,629 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/7d/68b6555c7bb414b655495305d2add784c251fc83d4e698878e6d1d35fc9a/pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,629 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,629 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/04/d5a6386b6d124bcdf27d81ab952e5d24e37ff98b97f992aa5b83c647e9c9/pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,629 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/aa/e6/0b18d30c30e3690c5774446c1d7246c5e37c4710e38d93a20bb56cad4bc0/pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,629 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/fc/d2be1a093bd8494ab63e3168aca36c2494753bbff190f3201ce2e7da9cda/pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,630 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/1a/4fd27da2d19f7d914f757097605709a6509776b4cb63f42bca63f3531058/pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,630 Found link https://files.pythonhosted.org/packages/15/f6/ce0611aaa1865a616f7dc164fbf046eaf38f2b17c6d404403c56250beb93/pysam-0.15.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.2 2022-11-08T22:34:25,630 Found link https://files.pythonhosted.org/packages/15/e7/2dab8bb0ac739555e69586f1492f0ff6bc4a1f8312992a83001d3deb77ac/pysam-0.15.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.3 2022-11-08T22:34:25,630 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bc/99/5b711afad53f7ebdafc182bae1642fd764e569a8c0de9408ea6138c668b0/pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,631 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/28/60742ebf8afa6efdf7d2cc3552cbef24da33bf0f76b26b5afef2406683fd/pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,631 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f2/c1/8f1562c2b89bc5606a3e8c57add0078af4cee3050507eac4b67b37309b16/pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,631 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/f3/2b9802c61089f6c94c73f902f17046c416793da9242dfe73462e79ec4635/pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,631 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/7b/a54f66a8b126c0d6eefa3f71ebdd46bf967c0452759b553432e845e927f3/pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,632 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/c6/a337077e2cbae228a7f1b0ee1d97b240609c9377b6d46df9dc0a477eff73/pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,632 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/55/9c/b064140318b64910f0a7938b385f10b88428aaa50f720038b2927a7db908/pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,632 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/b4/075c25bf8e1aaa11d178fdfe267d73f1ea14f9e90ecb0fe58cb98911bdc5/pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,632 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/78/df321a985e93be0d2dbf2249e9d79a33131381e8d9ef5c965db643183561/pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,633 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/cc/a9546377a762a84bd17ca313f182e8eba833e579a568c3d62571edd8c2f7/pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,633 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/01/2be4def91aeb50ccb963879b8193ca667087308696f2fe6aa86c6da9db72/pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,633 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c1/b9/4a37921da49d89c855b0fae747843b7d07187edd4f35d0069a7b02ce89cc/pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,633 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/46/d3abc41217b9cdd97109ab648094915ea55038bfa1d7d880012652704b37/pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,633 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/ee/2c5dacd21d02d3bb7c7baf03dba8f42bc4af8b02370b7e52b6e5425d2366/pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,634 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/1d/8569d5bb7592afa48796e2fc743372eb690c776fe21dce0ccb9607a202cd/pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,634 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d3/77/b885532e487e15db1b78fa2ecf00ef6edf5f4743025080941f60924da6ea/pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,634 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/78/63/0e143ae469f418cfab28fb165936d4101e1b813e3ce657762d51723ab38a/pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,634 Found link https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.4 2022-11-08T22:34:25,635 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/55/6f5ce9cfe9631c32b58d50be54b2d1ef7e53937d6e9208ac98ea41cc264b/pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,635 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/c6/49045eba4ae325d15e9de03802a633fe0d8e9ac2d02ad6de723ca99a9772/pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,635 Skipping link: No binaries permitted 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2022-11-08T22:34:25,636 Found link https://files.pythonhosted.org/packages/18/74/69018650a6ec9dae2eb2f710e158fa395134ce579c605f152e41890e7f3c/pysam-0.16.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0 2022-11-08T22:34:25,636 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/57/65c688a9f5757c82fc3954e5562725dbeaf3866f13d71d92d715263cd707/pysam-0.16.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,637 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/ab/a7f2637b5bc8fb278aa9b5a5d4eab70856625c09b1d95328e3b78132847c/pysam-0.16.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,637 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ca/09/ad780f4430777a7bfca63ee2d4d4584436d2f31f010d6bab743cfc97da48/pysam-0.16.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,637 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/a1/73e80a7a873f3fb0e52d368a4343eb9882b737c932b95020d82251f1087e/pysam-0.16.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,637 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/85/335857b9888f6d9a13b03a8f21b0a6228b180c361631d9d70e7be3e22163/pysam-0.16.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,637 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/e6/a26fac418a7481b5ce1ffc162fe033edc9a935536f893a0838842c011371/pysam-0.16.0.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,638 Found link https://files.pythonhosted.org/packages/99/5a/fc440eb5fffb5346e61a38b49991aa552e4b8b31e8493a101d2833ed1e19/pysam-0.16.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0.1 2022-11-08T22:34:25,638 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a5/28/88c9bc6527429dc7de1e8eee674cea4c9c6a0e6791b711a7dcf28ce96592/pysam-0.17.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,638 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/88/721b1d38c80f8183887dadc96be3422cdad13fb0acc7ffa73594f9bf1dac/pysam-0.17.0-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,639 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/ef/6e7342dbe0571fa078bd312f07dcb9b0693b89f8f6fbdf7876e4423374b9/pysam-0.17.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,639 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/99/f7/e01c12c24e73fdf2d87cc601ff119a4e175a6215efe9eb7b19c4ad37e22c/pysam-0.17.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,639 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/71/7b479540c2baf07a082cf266d0ca34c73f8c77298fad12942225c7d580ac/pysam-0.17.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,639 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d7/67/72012321601a2a0ff98903a4d5b71f695682baa034f10d6f675c9c8d0aea/pysam-0.17.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,639 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/4a/63786ee93e636a16c478a06aa2589fb9280eb41199dfc2182313ff56c3f8/pysam-0.17.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,640 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/02/9f79e6d100f3520e9dd33398ca5727d126fb81075ed78d797c3cf8eb8f3c/pysam-0.17.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,640 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/22/94/f6b8e682f9456ff7e29715207169c0eb2d5a98741d82bc89daf3fa048f7b/pysam-0.17.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,640 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/b6/1534473335178ece5b2133337564db90472b12b8dffe21124445b1847457/pysam-0.17.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,641 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/21/01fdca4c351f969629556a720599ea2daca3ce0bcf7cddc4b7c78b83da17/pysam-0.17.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,641 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/af/723d22ff52b846efdbb693e00e8bdbc39bdcb2952b1deeb8551a9c842691/pysam-0.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,641 Found link https://files.pythonhosted.org/packages/bf/a6/b1802ac26bb501ce8dada6f41dd83cdf591ecc834f2c208b07c6d97eba84/pysam-0.17.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.17.0 2022-11-08T22:34:25,642 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/9a/d75f5da85e0bd0f9f56a6a70dbd01a27c06dc6e22a5821b0ed38abf4b78a/pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,642 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/77/72/e3ca6db84546a87fe2932c0078a6f85df62b5358e0a34ac7225bbc23fc52/pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,642 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/01/c2917cad72433c4fad038b80cfd52eb79e9364636cd581efcc5fa1a6e0e0/pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,642 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/10/a07e015f79b8f3a946a5f960cdf817e75bce99498acafc534b3355c73fa9/pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,642 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/df/d556f87e14106fb467be0a0c9a960930f5e6d0d825c99060e248831a3457/pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,643 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/9f/9be10fcf302feb446244d4691008a4899e94e19b3c8aeea461bd89c7ec3f/pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,643 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ee/d2/ee6a3cb818db9c8cca8e7edd29526e2dca93fed1316a6c6cf7a9465a5b3b/pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,643 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/0b/ae4a2a28d7f84f6bb09de5392e093c17a3d232b902b54bd3415b0919c9d8/pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,643 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b9/bc/2df0c67e2c2d6130b01fa0e4f8c137d5749bfb3d618d1c6a7dab450133aa/pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,643 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/35/9a/dd9abdaacae2c23982612a218810f866e3f82ef3925f305d640bc9df7f28/pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,644 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4f/5a/cfb4cb6102335003a238e6d98e31ca23b42c9bef79cdf4ee55a1ab8b4cac/pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,644 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/41/0f/4ffdea619a8898c936f6f1b909759486167976d761fc265f931119f0da1e/pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,644 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/fb/4b78459c42ed9e7f5cee1304b6ecedcfcb74843619855ca4a1f15704a4bd/pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,644 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/52/19/786e6b77ea6d3545ee145179da8d3d7a07ee9480a930ad6c647bf1e764f5/pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,644 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/8b/13f22de05979c3aa2d2fb1c6627cf1846a59677ee457d30fe6e528d5938e/pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,645 Found link https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.18.0 2022-11-08T22:34:25,645 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/0a/2b0c483ea77567834b6e8185cd17cae2e40cca00534c5d8d61470b9efa90/pysam-0.19.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,645 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/17/4e4228ce33b8064b72266e68145911080eea227568a6b9c788e74ce5536f/pysam-0.19.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,645 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/a2/021bb0875543d0712823884c41b25e52189315a6081fdf53a32861382b37/pysam-0.19.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,646 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/b2/e1f9fff5d7c6afd26ff1b1798d5404822d99185cebbf3ade43ceed4e6a7b/pysam-0.19.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,646 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2e/a2/38e006ddb689d20c7842f7f00176f4f3c92a881350df67dde9c5894f8c7f/pysam-0.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,646 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ea/37/3c0c1ab1ad34d8c67db3052cb9301daeddedd3c84289b61cb95872324570/pysam-0.19.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,646 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/45/c5020545abf3138c1f94a5324bc59dba5b4e42634fafebb171dc6fe13574/pysam-0.19.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,646 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/49/a21697b94eac17fa3a73c419c8bf999f5bef8d37e03c3dbfc987c7709572/pysam-0.19.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,647 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/bb/26dabfedf33529cd17ea859450b46c2547b73aac6eff90573d1b8154abd1/pysam-0.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,647 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/da/70/79fec72c55234486f516684225a76903228511ba672783c245d0d4409a1b/pysam-0.19.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,647 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2a/6f/159e60484c50fabfac44783edce6208f1b8864eb001d690550a191f154b0/pysam-0.19.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,647 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/56/16bdbd513b9d9df090ce7d5d03eeaa26b794b109fefda4fb8af7165446b9/pysam-0.19.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,647 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/79/a7/da0e9848b3a78c5c3770e8b77ae3e46dc42f0f8e7f1239e825a7a9c1fac1/pysam-0.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,647 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/c5/8bb6517beb7acc3bb384ca98a66c9286003a946643bfd6de3ed1f9ea63a7/pysam-0.19.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,648 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/ee/24ddc6dd4425d83bf9fb0b24aa840134d99a09509d819b6b1393fcb27e16/pysam-0.19.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,648 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/41/4b65a3840c8bc14a4c97d9c66f66a6c08a30d8cc58ef9b45ee9de3bf5fe4/pysam-0.19.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,648 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/28/475ceedb85a8ef357af5b5394e9ef4ae0a317de651ff9ac6307e6f527b2d/pysam-0.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,648 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/fb/347f914e5873ec7405b95891fa605c3330d24462f00e7d230b7eb8e3df4c/pysam-0.19.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,648 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/31/570861d7b2eb6d605454a80ded377a0945bcc0cd19e804f29503d0f38aca/pysam-0.19.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,649 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/86/c40d02c99a7da3026ed69add5b2581a31f8d18676f2401811df227d17655/pysam-0.19.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,649 Found link https://files.pythonhosted.org/packages/ee/95/aef9a843807c00bb6b4e6c0cad0e69aa161ecc0591f3ece985fd24298f21/pysam-0.19.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.0 2022-11-08T22:34:25,649 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a7/82/968480f3e29bcc8dfd8b0a70654eb9e68f6b4d1e82e2a097615a8fa23d1a/pysam-0.19.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,649 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/fd/ff98658c0ca63a18269937330229447bcecda36845b896bc53b0ccf0e3c8/pysam-0.19.1-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,650 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/fd/2a054df7bed8080b6e973d5cece0c1a0b2b29fc7caec305bd74a957a4694/pysam-0.19.1-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,650 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/85/74/25e9707eca858bd1d838673798da26388e4bb70b5055e6a932857e8d7193/pysam-0.19.1-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,650 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/42/b8/22dca6472627ca6db890b8b96fe3072c1664bcc8dea0de72bc4ad5d5c06d/pysam-0.19.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,650 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4e/80/6a74aa85894649e1fe6c54cc967b34c5038184504b30babb2dfa4e659aca/pysam-0.19.1-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,650 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/16/9698f98a5158e6a54af67a690791e96de5e7bec25fc0a85c71f07562d4dc/pysam-0.19.1-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,651 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/76/a240c320d38f7b1b0276ec813a86b62706d0889e10e45a3b75199d46d21d/pysam-0.19.1-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,651 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/9a/b5331a776d809d480ae8de43e3dfd4f4f95e0c8fde2ae7ba1834f55541c1/pysam-0.19.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,651 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/3f/19b41f46e1d3d87c436953561d58b13cd7cb0d1cb427dab43219ac772d21/pysam-0.19.1-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,651 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/df/d21eb45113df10eed4643a3dccc88dcc9ffaaaa68b05cc64c95224e17682/pysam-0.19.1-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,651 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/aa/8d3f39218e6195306226bde4501ca472ea6a949bffaae3ed524a0979d197/pysam-0.19.1-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,652 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f5/b8/0d014ca37b39e082de98c8e663082ffc2dae5ee96ce9781527f5f8e1339d/pysam-0.19.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,652 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/d6/3dcb9d0304c265e95bf2f75e1f3caa1c9994569215f513f164bef22b8ff6/pysam-0.19.1-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,652 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/16/3a/c8705be2ef8c58abf5acd99d9acc4da2b4587db883622fbbe4064d79cd7d/pysam-0.19.1-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,652 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/69/4618c6f6fc55fc014f32b273d572244244180dd2c38c21b3a4bd4b7db482/pysam-0.19.1-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,652 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c2/ba/ad4f8bf3c1040c383480315dc95430c191ae5efc90e425498b84f7b277d5/pysam-0.19.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,652 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/18/87/deed4855181dd5c2ebd0781aa80e8d2978d43b0ce0faefec609b45bd2767/pysam-0.19.1-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,653 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/21/97ca4f1e0766aae90bce672581edfbd791656f7b65689dc38de6c906ee86/pysam-0.19.1-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,653 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a6/b8/ca778d0daaf989a10afac71db2427784b430b2b73c586cb9a0bfa408afd4/pysam-0.19.1-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,653 Found link https://files.pythonhosted.org/packages/a0/10/f6d705984838f8620ff597dd99d3904aea7727b4824bee22de8f44b4ebd4/pysam-0.19.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.1 2022-11-08T22:34:25,653 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/e8/1157591647bef8afbdda82b3a9aeeacc3b57dcff22ec546b2b7dc03641a2/pysam-0.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,654 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/10/b5/1fe09bbff3ea6bbb6d8211758736327144c00505204a942bb312f5a869c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,654 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/67/42f8148cdc23559593023a4394b3043c280efc1439dd2f5f414f38e6f2c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,654 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/90/6408a9015530685cc76182605ffc3ec5ecf20c194ef2fcca287b289d36e2/pysam-0.20.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,654 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d4/48/35ffba4dcfda138c0722fefa986584d53614c2d049ab1fb67d9d87a00c0a/pysam-0.20.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,654 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/76/2d/0d56cdb2b0a8a9823a3a221a551d6c630815f0c407a33d5ce1c47910029a/pysam-0.20.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,654 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/23/7091e3182e685a7832425178f6b6e73593f9cff0ba51b5a71b43ef2525b9/pysam-0.20.0-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,655 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e8/2c/f989a55927eb416520e64ee711665ef589b8095a385c2564e1e15226e597/pysam-0.20.0-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,655 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/6a/8d73eda449bede59734254688ccb182493667467aa8c2be0dbf64fa68689/pysam-0.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,655 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/65/e69e94905ea18ee478066b96863ef2d91f026661f4bb18106f6b0a532f24/pysam-0.20.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,655 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d9/49/a5d747be0e8f0044f52610ceed25b27a15a419b3f46f425507636f137484/pysam-0.20.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,655 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/f1/05fa22e7917afa8b0506d9dadc885324544f759d8a25cdd331bdad47d580/pysam-0.20.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,656 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/2c/23e8e5cdd6a91a50923653a77c05db872f865a43becac463f0b2963a8199/pysam-0.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,656 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/31/e7/019194574aa007c7dd6fe7ac1558d540fb397da4e8eb765542fdb92ec25b/pysam-0.20.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,656 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/3a/b0d850cfd1fc16ebfd44015af3dfe300eb3f7a39f495629b30685daa9e50/pysam-0.20.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,656 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/58/3f/746463a52b7e43ccd7ace167a4c64f96cb8a5fcd14a3cdae9c36deb28d41/pysam-0.20.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,656 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/db158ef30ca895c78c9265f70be9c8e225857d2aa62825d879c775879cf7/pysam-0.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,657 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fd/97/91a89da0db78e9f60d9107131b5725dd114d6c109cd78728b1c793dd884d/pysam-0.20.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,657 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2c/22/85a2be2a21e3c31657b6c4726237dd1335faff64aeadb999f31671a3cbb5/pysam-0.20.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,657 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ad/dc/93c92f425e61b22ae175cf4a83d8ba192bc82e9671f1cce262a92ae86911/pysam-0.20.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2022-11-08T22:34:25,657 Found link https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.20.0 2022-11-08T22:34:25,658 Fetching project page and analyzing links: https://www.piwheels.org/simple/pysam/ 2022-11-08T22:34:25,658 Getting page https://www.piwheels.org/simple/pysam/ 2022-11-08T22:34:25,659 Found index url https://www.piwheels.org/simple 2022-11-08T22:34:25,846 Fetched page https://www.piwheels.org/simple/pysam/ as text/html 2022-11-08T22:34:25,886 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=4081475d7ce179d2af0551894162bc12f3ebc2a9b5972cc673d6544ca9e2ceee (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,886 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=4081475d7ce179d2af0551894162bc12f3ebc2a9b5972cc673d6544ca9e2ceee (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,887 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv7l.whl#sha256=048151df693a8d132abc090b4b7c148deb484684316e3a945d7771fb140740b1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,887 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv6l.whl#sha256=048151df693a8d132abc090b4b7c148deb484684316e3a945d7771fb140740b1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,887 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,887 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,887 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=ff1cdd21402402c39bafb46fe2a8a7ce876b42357bca356a304320b873cb2282 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,888 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp35-cp35m-linux_armv6l.whl#sha256=ff1cdd21402402c39bafb46fe2a8a7ce876b42357bca356a304320b873cb2282 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,888 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp39-cp39-linux_armv7l.whl#sha256=abc5f7ca00dd7854f7f5be295b785c43b5b3c29f155ad73f0da2e75af9bbd0b6 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,888 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp39-cp39-linux_armv6l.whl#sha256=abc5f7ca00dd7854f7f5be295b785c43b5b3c29f155ad73f0da2e75af9bbd0b6 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,888 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,888 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,889 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv7l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,889 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv6l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,889 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,889 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,889 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,890 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,890 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv7l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,890 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv6l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,890 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,891 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,891 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,891 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,891 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv7l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,891 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv6l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,892 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv7l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,892 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv6l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,892 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv6l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,892 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv7l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,892 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv7l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,893 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv6l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,893 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv7l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,893 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv6l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,893 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,893 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,893 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,894 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,894 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv7l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,894 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv6l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,894 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv7l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,894 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv6l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,895 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv7l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,895 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv6l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,895 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv6l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,895 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv7l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,895 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv7l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,896 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv6l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,896 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv7l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,896 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv6l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,896 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv6l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,896 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv7l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,897 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv7l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,897 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv6l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,897 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv7l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,897 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv6l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,897 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv6l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,898 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv7l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,898 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv6l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,898 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv7l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,898 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,898 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,899 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,899 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,899 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,899 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,899 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv6l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,900 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv7l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,900 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv6l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,900 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv7l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,900 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv7l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,900 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv6l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,901 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv6l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,901 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv7l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,901 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp34-cp34m-linux_armv7l.whl#sha256=448531babc920f3709eac98ea2cf570cc10d0f7aa1b1e9be63ae30ed486e9b2c (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,901 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv7l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,901 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv6l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,902 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp34-cp34m-linux_armv7l.whl#sha256=c94eb91b2a476b0f28dffe6194d72d1853055291b9453996e0414cf39391af23 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,902 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv7l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,902 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv6l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,902 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv7l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,902 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv6l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,903 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv6l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,903 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv7l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,903 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv6l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,903 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv7l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,903 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv6l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,904 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv7l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,904 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv6l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,904 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv7l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,904 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv6l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,904 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv7l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,905 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv7l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,905 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv6l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,905 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv7l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,905 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv6l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,905 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv6l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,905 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv7l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,906 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv6l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,906 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv7l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,906 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv6l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,906 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv7l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,906 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv6l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,907 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv7l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,907 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv6l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,907 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv7l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,907 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv7l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,907 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,908 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv7l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,908 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv6l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,909 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv7l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,909 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv6l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,909 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv7l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,909 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv7l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,909 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv6l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,910 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv6l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,910 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv7l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,910 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,910 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,910 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv6l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,911 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv7l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,911 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv6l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,911 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv7l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,911 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv6l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,911 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv7l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,912 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv6l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,912 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv7l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,912 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv7l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,912 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv6l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,912 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv7l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,913 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv6l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,913 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv6l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,913 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv7l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,913 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,913 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,914 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv6l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,914 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv7l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,914 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,914 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,914 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,915 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,915 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,915 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,915 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,915 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,916 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,916 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,916 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,916 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2022-11-08T22:34:25,916 Skipping link: not a file: https://www.piwheels.org/simple/pysam/ 2022-11-08T22:34:25,917 Skipping link: not a file: https://pypi.org/simple/pysam/ 2022-11-08T22:34:25,940 Given no hashes to check 1 links for project 'pysam': discarding no candidates 2022-11-08T22:34:25,957 Collecting pysam==0.20.0 2022-11-08T22:34:25,960 Created temporary directory: /tmp/pip-unpack-4zgs5pzw 2022-11-08T22:34:26,066 Downloading pysam-0.20.0.tar.gz (4.0 MB) 2022-11-08T22:34:28,692 Added pysam==0.20.0 from https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz to build tracker '/tmp/pip-build-tracker-yh06a4cd' 2022-11-08T22:34:28,694 Running setup.py (path:/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/setup.py) egg_info for package pysam 2022-11-08T22:34:28,695 Created temporary directory: /tmp/pip-pip-egg-info-gnioz4h4 2022-11-08T22:34:28,695 Preparing metadata (setup.py): started 2022-11-08T22:34:28,696 Running command python setup.py egg_info 2022-11-08T22:34:29,718 # pysam: cython is available - using cythonize if necessary 2022-11-08T22:34:29,719 # pysam: htslib mode is shared 2022-11-08T22:34:29,719 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2022-11-08T22:34:29,719 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread 2022-11-08T22:34:29,719 # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-11-08T22:34:29,719 # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2 2022-11-08T22:34:30,180 checking for gcc... arm-linux-gnueabihf-gcc -pthread 2022-11-08T22:34:30,490 checking whether the C compiler works... yes 2022-11-08T22:34:30,491 checking for C compiler default output file name... a.out 2022-11-08T22:34:30,674 checking for suffix of executables... 2022-11-08T22:34:30,923 checking whether we are cross compiling... no 2022-11-08T22:34:31,026 checking for suffix of object files... o 2022-11-08T22:34:31,117 checking whether we are using the GNU C compiler... yes 2022-11-08T22:34:31,206 checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes 2022-11-08T22:34:31,346 checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed 2022-11-08T22:34:31,350 checking for ranlib... ranlib 2022-11-08T22:34:31,361 checking for grep that handles long lines and -e... /usr/bin/grep 2022-11-08T22:34:31,428 checking for C compiler warning flags... unknown 2022-11-08T22:34:31,490 checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no 2022-11-08T22:34:31,548 checking whether C compiler accepts -mavx2... no 2022-11-08T22:34:31,609 checking whether C compiler accepts -mavx512f... no 2022-11-08T22:34:32,027 checking whether C compiler supports ARM Neon... no 2022-11-08T22:34:32,030 checking for pkg-config... /usr/bin/pkg-config 2022-11-08T22:34:32,037 checking pkg-config is at least version 0.9.0... yes 2022-11-08T22:34:32,039 checking for special C compiler options needed for large files... no 2022-11-08T22:34:32,256 checking for _FILE_OFFSET_BITS value needed for large files... 64 2022-11-08T22:34:32,273 checking shared library type for unknown-Linux... plain .so 2022-11-08T22:34:32,483 checking whether the compiler accepts -fvisibility=hidden... yes 2022-11-08T22:34:32,615 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E 2022-11-08T22:34:32,742 checking for egrep... /usr/bin/grep -E 2022-11-08T22:34:33,258 checking for ANSI C header files... yes 2022-11-08T22:34:33,456 checking for sys/types.h... yes 2022-11-08T22:34:33,615 checking for sys/stat.h... yes 2022-11-08T22:34:33,775 checking for stdlib.h... yes 2022-11-08T22:34:33,941 checking for string.h... yes 2022-11-08T22:34:34,110 checking for memory.h... yes 2022-11-08T22:34:34,310 checking for strings.h... yes 2022-11-08T22:34:34,478 checking for inttypes.h... yes 2022-11-08T22:34:34,645 checking for stdint.h... yes 2022-11-08T22:34:34,824 checking for unistd.h... yes 2022-11-08T22:34:34,854 checking for stdlib.h... (cached) yes 2022-11-08T22:34:34,883 checking for unistd.h... (cached) yes 2022-11-08T22:34:35,188 checking for sys/param.h... yes 2022-11-08T22:34:35,408 checking for getpagesize... yes 2022-11-08T22:34:35,770 checking for working mmap... yes 2022-11-08T22:34:36,043 checking for gmtime_r... yes 2022-11-08T22:34:36,279 checking for fsync... yes 2022-11-08T22:34:36,515 checking for drand48... yes 2022-11-08T22:34:36,771 checking for srand48_deterministic... no 2022-11-08T22:34:36,965 checking whether fdatasync is declared... yes 2022-11-08T22:34:37,164 checking for fdatasync... yes 2022-11-08T22:34:37,644 checking for library containing log... -lm 2022-11-08T22:34:37,785 checking for zlib.h... yes 2022-11-08T22:34:37,991 checking for inflate in -lz... yes 2022-11-08T22:34:38,216 checking for library containing recv... none required 2022-11-08T22:34:38,374 checking for bzlib.h... yes 2022-11-08T22:34:38,577 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2022-11-08T22:34:38,749 checking for lzma.h... yes 2022-11-08T22:34:38,981 checking for lzma_easy_buffer_encode in -llzma... yes 2022-11-08T22:34:38,987 checking whether htscodecs files are present... yes 2022-11-08T22:34:39,082 checking for libdeflate.h... yes 2022-11-08T22:34:39,321 checking for libdeflate_deflate_compress in -ldeflate... yes 2022-11-08T22:34:39,515 checking for curl/curl.h... yes 2022-11-08T22:34:39,950 checking for curl_easy_pause in -lcurl... yes 2022-11-08T22:34:40,211 checking for CCHmac... no 2022-11-08T22:34:40,848 checking for library containing HMAC... -lcrypto 2022-11-08T22:34:41,057 checking for library containing regcomp... none required 2022-11-08T22:34:41,197 checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes 2022-11-08T22:34:41,282 configure: creating ./config.status 2022-11-08T22:34:41,741 config.status: creating config.mk 2022-11-08T22:34:41,812 config.status: creating htslib.pc.tmp 2022-11-08T22:34:41,891 config.status: creating config.h 2022-11-08T22:34:41,950 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2022-11-08T22:34:42,498 # pysam: htslib configure options: --enable-libcurl 2022-11-08T22:34:42,498 # pysam: htslib_config HTS_CFLAGS_AVX2= 2022-11-08T22:34:42,498 # pysam: htslib_config HTS_CFLAGS_AVX512= 2022-11-08T22:34:42,499 # pysam: htslib_config HTS_CFLAGS_SSE4= 2022-11-08T22:34:42,499 # pysam: htslib_config HTS_HAVE_NEON= 2022-11-08T22:34:42,499 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2022-11-08T22:34:42,499 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2022-11-08T22:34:42,499 # pysam: htslib_config PLATFORM=default 2022-11-08T22:34:42,499 # pysam: config_option: ENABLE_GCS=1 2022-11-08T22:34:42,499 # pysam: config_option: ENABLE_PLUGINS=0 2022-11-08T22:34:42,500 # pysam: config_option: ENABLE_S3=1 2022-11-08T22:34:42,500 # pysam: config_option: HAVE_COMMONCRYPTO=0 2022-11-08T22:34:42,500 # pysam: config_option: HAVE_HMAC=1 2022-11-08T22:34:42,500 # pysam: config_option: HAVE_LIBBZ2=1 2022-11-08T22:34:42,500 # pysam: config_option: HAVE_LIBCURL=1 2022-11-08T22:34:42,500 # pysam: config_option: HAVE_LIBDEFLATE=1 2022-11-08T22:34:42,500 # pysam: config_option: HAVE_LIBLZMA=1 2022-11-08T22:34:42,500 # pysam: config_option: HAVE_MMAP=1 2022-11-08T22:34:42,501 running egg_info 2022-11-08T22:34:42,502 creating /tmp/pip-pip-egg-info-gnioz4h4/pysam.egg-info 2022-11-08T22:34:42,524 writing /tmp/pip-pip-egg-info-gnioz4h4/pysam.egg-info/PKG-INFO 2022-11-08T22:34:42,527 writing dependency_links to /tmp/pip-pip-egg-info-gnioz4h4/pysam.egg-info/dependency_links.txt 2022-11-08T22:34:42,530 writing top-level names to /tmp/pip-pip-egg-info-gnioz4h4/pysam.egg-info/top_level.txt 2022-11-08T22:34:42,532 writing manifest file '/tmp/pip-pip-egg-info-gnioz4h4/pysam.egg-info/SOURCES.txt' 2022-11-08T22:34:42,612 reading manifest file '/tmp/pip-pip-egg-info-gnioz4h4/pysam.egg-info/SOURCES.txt' 2022-11-08T22:34:42,614 reading manifest template 'MANIFEST.in' 2022-11-08T22:34:42,616 warning: no files found matching 'KNOWN_BUGS' 2022-11-08T22:34:42,616 warning: no files found matching 'THANKS' 2022-11-08T22:34:42,625 no previously-included directories found matching 'tests/' 2022-11-08T22:34:42,759 adding license file 'COPYING' 2022-11-08T22:34:42,759 adding license file 'AUTHORS' 2022-11-08T22:34:42,781 writing manifest file '/tmp/pip-pip-egg-info-gnioz4h4/pysam.egg-info/SOURCES.txt' 2022-11-08T22:34:42,910 Preparing metadata (setup.py): finished with status 'done' 2022-11-08T22:34:42,915 Source in /tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 has version 0.20.0, which satisfies requirement pysam==0.20.0 from https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz 2022-11-08T22:34:42,916 Removed pysam==0.20.0 from https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz from build tracker '/tmp/pip-build-tracker-yh06a4cd' 2022-11-08T22:34:42,921 Created temporary directory: /tmp/pip-unpack-65mvatck 2022-11-08T22:34:42,922 Building wheels for collected packages: pysam 2022-11-08T22:34:42,927 Created temporary directory: /tmp/pip-wheel-4k_ooexn 2022-11-08T22:34:42,927 Building wheel for pysam (setup.py): started 2022-11-08T22:34:42,928 Destination directory: /tmp/pip-wheel-4k_ooexn 2022-11-08T22:34:42,928 Running command python setup.py bdist_wheel 2022-11-08T22:34:43,912 # pysam: cython is available - using cythonize if necessary 2022-11-08T22:34:43,912 # pysam: htslib mode is shared 2022-11-08T22:34:43,913 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2022-11-08T22:34:43,913 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread 2022-11-08T22:34:43,913 # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-11-08T22:34:43,913 # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2 2022-11-08T22:34:44,291 checking for gcc... arm-linux-gnueabihf-gcc -pthread 2022-11-08T22:34:44,617 checking whether the C compiler works... yes 2022-11-08T22:34:44,618 checking for C compiler default output file name... a.out 2022-11-08T22:34:44,803 checking for suffix of executables... 2022-11-08T22:34:45,022 checking whether we are cross compiling... no 2022-11-08T22:34:45,125 checking for suffix of object files... o 2022-11-08T22:34:45,219 checking whether we are using the GNU C compiler... yes 2022-11-08T22:34:45,347 checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes 2022-11-08T22:34:45,487 checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed 2022-11-08T22:34:45,489 checking for ranlib... ranlib 2022-11-08T22:34:45,499 checking for grep that handles long lines and -e... /usr/bin/grep 2022-11-08T22:34:45,565 checking for C compiler warning flags... unknown 2022-11-08T22:34:45,629 checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no 2022-11-08T22:34:45,687 checking whether C compiler accepts -mavx2... no 2022-11-08T22:34:45,746 checking whether C compiler accepts -mavx512f... no 2022-11-08T22:34:46,121 checking whether C compiler supports ARM Neon... no 2022-11-08T22:34:46,123 checking for pkg-config... /usr/bin/pkg-config 2022-11-08T22:34:46,131 checking pkg-config is at least version 0.9.0... yes 2022-11-08T22:34:46,133 checking for special C compiler options needed for large files... no 2022-11-08T22:34:46,347 checking for _FILE_OFFSET_BITS value needed for large files... 64 2022-11-08T22:34:46,364 checking shared library type for unknown-Linux... plain .so 2022-11-08T22:34:46,558 checking whether the compiler accepts -fvisibility=hidden... yes 2022-11-08T22:34:46,679 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E 2022-11-08T22:34:46,821 checking for egrep... /usr/bin/grep -E 2022-11-08T22:34:47,380 checking for ANSI C header files... yes 2022-11-08T22:34:47,518 checking for sys/types.h... yes 2022-11-08T22:34:47,678 checking for sys/stat.h... yes 2022-11-08T22:34:47,898 checking for stdlib.h... yes 2022-11-08T22:34:48,065 checking for string.h... yes 2022-11-08T22:34:48,231 checking for memory.h... yes 2022-11-08T22:34:48,400 checking for strings.h... yes 2022-11-08T22:34:48,571 checking for inttypes.h... yes 2022-11-08T22:34:48,804 checking for stdint.h... yes 2022-11-08T22:34:48,985 checking for unistd.h... yes 2022-11-08T22:34:49,016 checking for stdlib.h... (cached) yes 2022-11-08T22:34:49,045 checking for unistd.h... (cached) yes 2022-11-08T22:34:49,244 checking for sys/param.h... yes 2022-11-08T22:34:49,458 checking for getpagesize... yes 2022-11-08T22:34:49,853 checking for working mmap... yes 2022-11-08T22:34:50,074 checking for gmtime_r... yes 2022-11-08T22:34:50,313 checking for fsync... yes 2022-11-08T22:34:50,605 checking for drand48... yes 2022-11-08T22:34:50,861 checking for srand48_deterministic... no 2022-11-08T22:34:51,054 checking whether fdatasync is declared... yes 2022-11-08T22:34:51,280 checking for fdatasync... yes 2022-11-08T22:34:51,744 checking for library containing log... -lm 2022-11-08T22:34:51,867 checking for zlib.h... yes 2022-11-08T22:34:52,102 checking for inflate in -lz... yes 2022-11-08T22:34:52,313 checking for library containing recv... none required 2022-11-08T22:34:52,414 checking for bzlib.h... yes 2022-11-08T22:34:52,615 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2022-11-08T22:34:52,737 checking for lzma.h... yes 2022-11-08T22:34:52,987 checking for lzma_easy_buffer_encode in -llzma... yes 2022-11-08T22:34:52,993 checking whether htscodecs files are present... yes 2022-11-08T22:34:53,088 checking for libdeflate.h... yes 2022-11-08T22:34:53,295 checking for libdeflate_deflate_compress in -ldeflate... yes 2022-11-08T22:34:53,455 checking for curl/curl.h... yes 2022-11-08T22:34:53,864 checking for curl_easy_pause in -lcurl... yes 2022-11-08T22:34:54,111 checking for CCHmac... no 2022-11-08T22:34:54,758 checking for library containing HMAC... -lcrypto 2022-11-08T22:34:54,972 checking for library containing regcomp... none required 2022-11-08T22:34:55,116 checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes 2022-11-08T22:34:55,192 configure: creating ./config.status 2022-11-08T22:34:55,573 config.status: creating config.mk 2022-11-08T22:34:55,626 config.status: creating htslib.pc.tmp 2022-11-08T22:34:55,686 config.status: creating config.h 2022-11-08T22:34:55,709 config.status: config.h is unchanged 2022-11-08T22:34:55,717 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2022-11-08T22:34:55,819 # pysam: htslib configure options: --enable-libcurl 2022-11-08T22:34:55,928 # pysam: htslib_config HTS_CFLAGS_AVX2= 2022-11-08T22:34:55,928 # pysam: htslib_config HTS_CFLAGS_AVX512= 2022-11-08T22:34:55,928 # pysam: htslib_config HTS_CFLAGS_SSE4= 2022-11-08T22:34:55,928 # pysam: htslib_config HTS_HAVE_NEON= 2022-11-08T22:34:55,928 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2022-11-08T22:34:55,928 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2022-11-08T22:34:55,928 # pysam: htslib_config PLATFORM=default 2022-11-08T22:34:55,931 # pysam: config_option: ENABLE_GCS=1 2022-11-08T22:34:55,931 # pysam: config_option: ENABLE_PLUGINS=0 2022-11-08T22:34:55,932 # pysam: config_option: ENABLE_S3=1 2022-11-08T22:34:55,932 # pysam: config_option: HAVE_COMMONCRYPTO=0 2022-11-08T22:34:55,932 # pysam: config_option: HAVE_HMAC=1 2022-11-08T22:34:55,932 # pysam: config_option: HAVE_LIBBZ2=1 2022-11-08T22:34:55,932 # pysam: config_option: HAVE_LIBCURL=1 2022-11-08T22:34:55,932 # pysam: config_option: HAVE_LIBDEFLATE=1 2022-11-08T22:34:55,932 # pysam: config_option: HAVE_LIBLZMA=1 2022-11-08T22:34:55,932 # pysam: config_option: HAVE_MMAP=1 2022-11-08T22:34:56,191 running bdist_wheel 2022-11-08T22:34:56,236 running build 2022-11-08T22:34:56,236 running build_py 2022-11-08T22:34:56,262 creating build 2022-11-08T22:34:56,263 creating build/lib.linux-armv7l-cpython-39 2022-11-08T22:34:56,264 creating build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,265 copying pysam/__init__.py -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,268 copying pysam/utils.py -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,270 copying pysam/config.py -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,272 copying pysam/bcftools.py -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,274 copying pysam/samtools.py -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,277 copying pysam/Pileup.py -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,279 copying pysam/version.py -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,282 creating build/lib.linux-armv7l-cpython-39/pysam/include 2022-11-08T22:34:56,283 copying pysam/include/__init__.py -> build/lib.linux-armv7l-cpython-39/pysam/include 2022-11-08T22:34:56,327 copying pysam/libcutils.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,329 copying pysam/libchtslib.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,335 copying pysam/libcbcftools.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,338 copying pysam/libcbcf.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,341 copying pysam/libcalignedsegment.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,343 copying pysam/libcalignmentfile.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,346 copying pysam/libcsamfile.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,349 copying pysam/libcvcf.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,351 copying pysam/libctabix.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,354 copying pysam/libctabixproxies.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,356 copying pysam/libcfaidx.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,359 copying pysam/libcsamtools.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,361 copying pysam/cbcftools_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,363 copying pysam/htslib_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,366 copying pysam/pysam_stream.h -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,369 copying pysam/pysam_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,371 copying pysam/version.h -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,374 copying pysam/csamtools_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,376 copying pysam/py.typed -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,378 copying pysam/libctabix.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,381 copying pysam/libcalignedsegment.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,384 copying pysam/libchtslib.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,387 copying pysam/libctabixproxies.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,389 copying pysam/libcsamfile.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,392 copying pysam/libcbcf.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,395 copying pysam/libcbcftools.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,397 copying pysam/libcvcf.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,400 copying pysam/libcfaidx.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,402 copying pysam/libcalignmentfile.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,405 copying pysam/libcutils.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,407 copying pysam/version.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,410 copying pysam/libcbgzf.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,412 copying pysam/libcsamtools.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2022-11-08T22:34:56,415 creating build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,416 copying samtools/bam_ampliconclip.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,419 copying samtools/bam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,421 copying samtools/sample.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,424 copying samtools/config.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,426 copying samtools/sam_opts.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,429 copying samtools/tmp_file.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,432 copying samtools/splaysort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,435 copying samtools/bam_plbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,438 copying samtools/bam_lpileup.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,440 copying samtools/samtools.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,443 copying samtools/consensus_pileup.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,446 copying samtools/stats_isize.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,448 copying samtools/samtools.pysam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,451 copying samtools/bedidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2022-11-08T22:34:56,453 creating build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,455 copying bcftools/vcmp.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,457 copying bcftools/call.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,460 copying bcftools/tsv2vcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,463 copying bcftools/convert.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,466 copying bcftools/rbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,469 copying bcftools/config.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,471 copying bcftools/prob1.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,474 copying bcftools/vcfbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,476 copying bcftools/kmin.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,479 copying bcftools/hclust.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,482 copying bcftools/khash_str2str.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,485 copying bcftools/bcftools.pysam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,487 copying bcftools/gvcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,490 copying bcftools/extsort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,492 copying bcftools/utlist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,496 copying bcftools/cols.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,499 copying bcftools/bin.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,502 copying bcftools/hex.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,505 copying bcftools/bam_sample.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,507 copying bcftools/str_finder.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,510 copying bcftools/dist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,512 copying bcftools/mw.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,517 copying bcftools/bcftools.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,520 copying bcftools/abuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,523 copying bcftools/HMM.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,526 copying bcftools/filter.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,529 copying bcftools/bam2bcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,532 copying bcftools/regidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,535 copying bcftools/dbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,538 copying bcftools/kheap.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,541 copying bcftools/variantkey.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,544 copying bcftools/smpl_ilist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,547 copying bcftools/ploidy.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2022-11-08T22:34:56,550 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,551 copying htslib/thread_pool_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,554 copying htslib/hfile_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,557 copying htslib/config.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,560 copying htslib/bcf_sr_sort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,563 copying htslib/textutils_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,566 copying htslib/header.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,569 copying htslib/hts_time_funcs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,572 copying htslib/hts_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,575 copying htslib/sam_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2022-11-08T22:34:56,577 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,578 copying htslib/htslib/klist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,582 copying htslib/htslib/bgzf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,585 copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,588 copying htslib/htslib/vcfutils.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,591 copying htslib/htslib/hts_log.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,594 copying htslib/htslib/kbitset.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,597 copying htslib/htslib/kroundup.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,599 copying htslib/htslib/hts_endian.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,602 copying htslib/htslib/sam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,607 copying htslib/htslib/hfile.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,610 copying htslib/htslib/khash_str2int.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,613 copying htslib/htslib/hts.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,617 copying htslib/htslib/hts_expr.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,620 copying htslib/htslib/faidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,624 copying htslib/htslib/tbx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,626 copying htslib/htslib/khash.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,630 copying htslib/htslib/hts_os.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,632 copying htslib/htslib/knetfile.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,635 copying htslib/htslib/ksort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,638 copying htslib/htslib/kstring.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,641 copying htslib/htslib/vcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,646 copying htslib/htslib/cram.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,649 copying htslib/htslib/kseq.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,653 copying htslib/htslib/hts_defs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,656 copying htslib/htslib/regidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,659 copying htslib/htslib/thread_pool.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,662 copying htslib/htslib/vcf_sweep.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,664 copying htslib/htslib/kfunc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2022-11-08T22:34:56,671 running build_ext 2022-11-08T22:34:56,750 skipping 'pysam/libchtslib.c' Cython extension (up-to-date) 2022-11-08T22:34:56,752 skipping 'pysam/libcsamtools.c' Cython extension (up-to-date) 2022-11-08T22:34:56,753 skipping 'pysam/libcbcftools.c' Cython extension (up-to-date) 2022-11-08T22:34:56,754 skipping 'pysam/libcutils.c' Cython extension (up-to-date) 2022-11-08T22:34:56,755 skipping 'pysam/libcalignmentfile.c' Cython extension (up-to-date) 2022-11-08T22:34:56,756 skipping 'pysam/libcsamfile.c' Cython extension (up-to-date) 2022-11-08T22:34:56,757 skipping 'pysam/libcalignedsegment.c' Cython extension (up-to-date) 2022-11-08T22:34:56,758 skipping 'pysam/libctabix.c' Cython extension (up-to-date) 2022-11-08T22:34:56,759 skipping 'pysam/libcfaidx.c' Cython extension (up-to-date) 2022-11-08T22:34:56,760 skipping 'pysam/libcbcf.c' Cython extension (up-to-date) 2022-11-08T22:34:56,762 skipping 'pysam/libcbgzf.c' Cython extension (up-to-date) 2022-11-08T22:34:56,763 skipping 'pysam/libctabixproxies.c' Cython extension (up-to-date) 2022-11-08T22:34:56,764 skipping 'pysam/libcvcf.c' Cython extension (up-to-date) 2022-11-08T22:34:56,765 creating htslib/config_vars.h for 'pysam.libchtslib' extension 2022-11-08T22:34:56,767 building 'libhts.a' 2022-11-08T22:34:56,859 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c 2022-11-08T22:34:57,374 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c 2022-11-08T22:34:58,150 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c 2022-11-08T22:35:00,226 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c 2022-11-08T22:35:03,057 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c 2022-11-08T22:35:03,641 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c 2022-11-08T22:35:05,279 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c 2022-11-08T22:35:09,133 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c 2022-11-08T22:35:10,588 echo '#define HTS_VERSION_TEXT "1.16"' > version.h 2022-11-08T22:35:10,595 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c 2022-11-08T22:35:17,964 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c 2022-11-08T22:35:19,545 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c 2022-11-08T22:35:19,665 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c 2022-11-08T22:35:20,233 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c 2022-11-08T22:35:20,767 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c 2022-11-08T22:35:21,419 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c 2022-11-08T22:35:22,242 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat 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-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c 2022-11-08T22:35:38,201 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c 2022-11-08T22:35:38,530 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c 2022-11-08T22:35:39,285 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c 2022-11-08T22:35:40,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c 2022-11-08T22:35:40,951 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c 2022-11-08T22:35:52,848 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c 2022-11-08T22:35:55,650 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c 2022-11-08T22:36:00,356 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c 2022-11-08T22:36:06,059 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c 2022-11-08T22:36:13,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g 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arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c 2022-11-08T22:36:30,539 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c 2022-11-08T22:36:31,197 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. 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-Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c 2022-11-08T22:36:40,110 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c 2022-11-08T22:36:40,577 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c 2022-11-08T22:36:42,868 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c 2022-11-08T22:36:43,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_libcurl.o hfile_libcurl.c 2022-11-08T22:36:45,354 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_gcs.o hfile_gcs.c 2022-11-08T22:36:45,832 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3.o hfile_s3.c 2022-11-08T22:36:48,502 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3_write.o hfile_s3_write.c 2022-11-08T22:36:49,777 ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2022-11-08T22:36:50,018 ranlib libhts.a 2022-11-08T22:36:50,317 building 'pysam.libchtslib' extension 2022-11-08T22:36:50,318 creating build/temp.linux-armv7l-cpython-39 2022-11-08T22:36:50,319 creating build/temp.linux-armv7l-cpython-39/pysam 2022-11-08T22:36:50,320 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/htslib_util.c -o build/temp.linux-armv7l-cpython-39/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:36:50,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libchtslib.c -o build/temp.linux-armv7l-cpython-39/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:03,873 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/htslib_util.o build/temp.linux-armv7l-cpython-39/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o htslib/hfile_libcurl.o htslib/hfile_gcs.o htslib/hfile_s3.o htslib/hfile_s3_write.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -o build/lib.linux-armv7l-cpython-39/pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:37:04,613 creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension 2022-11-08T22:37:04,615 building 'pysam.libcsamtools' extension 2022-11-08T22:37:04,617 creating build/temp.linux-armv7l-cpython-39/samtools 2022-11-08T22:37:04,619 creating build/temp.linux-armv7l-cpython-39/samtools/lz4 2022-11-08T22:37:04,620 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcsamtools.c -o build/temp.linux-armv7l-cpython-39/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:05,488 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:09,065 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:09,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:11,653 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:12,329 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:14,057 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:14,293 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:15,007 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_color.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:15,285 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:17,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:18,418 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:18,654 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_import.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:19,554 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_index.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:20,006 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:20,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:24,178 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:25,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_md.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:26,038 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:26,266 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:28,402 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:28,747 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:29,473 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:30,730 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:31,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:32,541 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:40,431 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_split.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:41,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:42,361 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:44,371 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bamtk.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:44,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bedcov.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:45,818 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/bedidx.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:47,344 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:47,926 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/coverage.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:48,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/cut_target.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:49,576 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/dict.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:50,509 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/faidx.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:51,071 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/lz4/lz4.c -o build/temp.linux-armv7l-cpython-39/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:56,309 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/padding.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:37:57,489 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/phase.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:00,119 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/reference.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:00,999 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:01,305 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:01,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/sam_view.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:04,351 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/sample.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:05,062 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/samtools.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:05,280 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/stats.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:09,710 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:10,282 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:10,719 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcsamtools.o build/temp.linux-armv7l-cpython-39/samtools/amplicon_stats.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam2depth.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_addrprg.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_aux.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_cat.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_color.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_consensus.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_fastq.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_flags.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_import.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_index.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_lpileup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_markdup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_mate.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_md.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_plbuf.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_plcmd.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_quickcheck.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_reheader.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdupse.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_samples.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_sort.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_split.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_stat.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bamshuf.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bamtk.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bedcov.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bedidx.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/consensus_pileup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/coverage.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/cut_target.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/dict.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/faidx.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/lz4/lz4.o build/temp.linux-armv7l-cpython-39/samtools/padding.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/phase.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/reference.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sam_opts.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sam_utils.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sam_view.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sample.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/samtools.pysam.o build/temp.linux-armv7l-cpython-39/samtools/stats.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/stats_isize.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/tmp_file.c.pysam.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:38:11,192 building 'pysam.libcbcftools' extension 2022-11-08T22:38:11,195 creating build/temp.linux-armv7l-cpython-39/bcftools 2022-11-08T22:38:11,198 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/HMM.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:12,084 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/abuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:14,496 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:16,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:18,725 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:20,427 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/bcftools.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:20,636 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/bin.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:20,944 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/ccall.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:21,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/cols.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:21,861 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:24,019 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/convert.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:29,233 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/csq.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:37,041 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/dist.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:37,314 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/em.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:37,882 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/extsort.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:38,370 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/filter.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:50,559 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:51,090 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/hclust.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:51,660 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/kmin.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:52,083 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/main.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:52,423 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/mcall.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:55,745 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:57,879 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:38:58,833 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/prob1.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:00,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/regidx.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:01,434 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:04,216 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:04,647 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:05,040 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/tabix.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:05,405 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:05,790 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:13,959 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:15,121 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:17,516 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:19,431 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:21,799 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:24,992 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:26,415 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:29,114 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:29,461 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:30,101 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:31,681 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:33,572 bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: 2022-11-08T22:39:33,572 bcftools/vcfmerge.c.pysam.c:751:34: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2022-11-08T22:39:33,572 751 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n 2022-11-08T22:39:33,572 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-11-08T22:39:33,573 In file included from /tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib/htslib/kstring.h:30, 2022-11-08T22:39:33,573 from /tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib/htslib/hts.h:37, 2022-11-08T22:39:33,573 from /tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib/htslib/vcf.h:39, 2022-11-08T22:39:33,573 from bcftools/vcfmerge.c.pysam.c:35: 2022-11-08T22:39:33,574 /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 2022-11-08T22:39:33,574 542 | extern void *calloc (size_t __nmemb, size_t __size) 2022-11-08T22:39:33,574 | ^~~~~~ 2022-11-08T22:39:41,344 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:48,671 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:48,923 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:50,092 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:52,355 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:53,574 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:54,291 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:58,165 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:39:59,921 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:40:00,329 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c bcftools/version.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:40:00,661 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcbcftools.c -o build/temp.linux-armv7l-cpython-39/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:40:01,541 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bcftools/HMM.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/abuf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam_sample.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bcftools.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bin.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/ccall.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/cols.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/consensus.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/convert.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/csq.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/dist.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/em.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/extsort.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/filter.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/gvcf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/hclust.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/kmin.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/main.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/mcall.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/mpileup.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/ploidy.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/prob1.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/regidx.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/reheader.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/smpl_ilist.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/str_finder.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/tabix.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/tsv2vcf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfannotate.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfbuf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfcall.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfcnv.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfconcat.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfconvert.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcffilter.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfhead.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfindex.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfisec.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfmerge.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfnorm.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfplugin.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfquery.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfroh.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfsom.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfsort.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfstats.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfview.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcmp.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/version.c.pysam.o build/temp.linux-armv7l-cpython-39/pysam/libcbcftools.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:40:02,083 building 'pysam.libcutils' extension 2022-11-08T22:40:02,085 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcutils.c -o build/temp.linux-armv7l-cpython-39/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:40:12,932 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/pysam_util.c -o build/temp.linux-armv7l-cpython-39/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:40:13,099 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcutils.o build/temp.linux-armv7l-cpython-39/pysam/pysam_util.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcsamtools.cpython-39-arm-linux-gnueabihf -lcbcftools.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcutils.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:40:13,303 building 'pysam.libcalignmentfile' extension 2022-11-08T22:40:13,304 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcalignmentfile.c -o build/temp.linux-armv7l-cpython-39/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:40:55,030 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcalignmentfile.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:40:55,341 building 'pysam.libcsamfile' extension 2022-11-08T22:40:55,344 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcsamfile.c -o build/temp.linux-armv7l-cpython-39/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:40:57,501 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcsamfile.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:40:57,664 building 'pysam.libcalignedsegment' extension 2022-11-08T22:40:57,666 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcalignedsegment.c -o build/temp.linux-armv7l-cpython-39/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:41:52,361 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcalignedsegment.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:41:52,746 building 'pysam.libctabix' extension 2022-11-08T22:41:52,746 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libctabix.c -o build/temp.linux-armv7l-cpython-39/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:42:12,507 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libctabix.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libctabix.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:42:12,739 building 'pysam.libcfaidx' extension 2022-11-08T22:42:12,740 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcfaidx.c -o build/temp.linux-armv7l-cpython-39/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:42:24,595 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcfaidx.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:42:24,798 building 'pysam.libcbcf' extension 2022-11-08T22:42:24,800 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcbcf.c -o build/temp.linux-armv7l-cpython-39/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:43:40,684 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcbcf.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:43:41,143 building 'pysam.libcbgzf' extension 2022-11-08T22:43:41,144 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcbgzf.c -o build/temp.linux-armv7l-cpython-39/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:43:46,271 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcbgzf.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:43:46,457 building 'pysam.libctabixproxies' extension 2022-11-08T22:43:46,458 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libctabixproxies.c -o build/temp.linux-armv7l-cpython-39/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:44:04,626 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libctabixproxies.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:44:04,851 building 'pysam.libcvcf' extension 2022-11-08T22:44:04,851 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/htslib -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/samtools/lz4 -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/bcftools -I/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -I/usr/include/python3.9 -c pysam/libcvcf.c -o build/temp.linux-armv7l-cpython-39/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2022-11-08T22:44:48,167 pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.constprop’: 2022-11-08T22:44:48,183 pysam/libcvcf.c:25285:16: warning: ‘__pyx_v_qual’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-11-08T22:44:48,183 25285 | __pyx_t_12 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 873, __pyx_L1_error) 2022-11-08T22:44:48,184 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-11-08T22:45:06,864 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcvcf.o -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1/pysam -L/tmp/pip-wheel-z6dnntuu/pysam_f906789a7cae48139045e715e7533cd1 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2022-11-08T22:45:07,652 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-08T22:45:07,652 warnings.warn( 2022-11-08T22:45:07,676 installing to build/bdist.linux-armv7l/wheel 2022-11-08T22:45:07,677 running install 2022-11-08T22:45:07,703 running install_lib 2022-11-08T22:45:07,727 creating build/bdist.linux-armv7l 2022-11-08T22:45:07,728 creating build/bdist.linux-armv7l/wheel 2022-11-08T22:45:07,730 creating build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,732 copying build/lib.linux-armv7l-cpython-39/pysam/__init__.py -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,734 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,737 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,739 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,741 copying build/lib.linux-armv7l-cpython-39/pysam/cbcftools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,743 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,764 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,868 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,870 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,872 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,874 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,876 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,877 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,879 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,906 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,955 copying build/lib.linux-armv7l-cpython-39/pysam/utils.py -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,957 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,973 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,978 copying build/lib.linux-armv7l-cpython-39/pysam/config.py -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:07,980 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,064 copying build/lib.linux-armv7l-cpython-39/pysam/bcftools.py -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,066 copying build/lib.linux-armv7l-cpython-39/pysam/htslib_util.h -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,068 copying build/lib.linux-armv7l-cpython-39/pysam/py.typed -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,069 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,075 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,137 copying build/lib.linux-armv7l-cpython-39/pysam/samtools.py -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,139 copying build/lib.linux-armv7l-cpython-39/pysam/pysam_stream.h -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,141 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,142 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,144 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,246 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,248 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,250 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,252 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,254 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,256 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,258 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,351 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,353 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,355 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,364 copying build/lib.linux-armv7l-cpython-39/pysam/pysam_util.h -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,366 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,368 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,425 creating build/bdist.linux-armv7l/wheel/pysam/include 2022-11-08T22:45:08,426 copying build/lib.linux-armv7l-cpython-39/pysam/include/__init__.py -> build/bdist.linux-armv7l/wheel/pysam/include 2022-11-08T22:45:08,428 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,429 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,431 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,434 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,436 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,439 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,439 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,442 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,444 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,447 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,449 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,451 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,453 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,455 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,458 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,462 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,464 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,466 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,470 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,472 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,475 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,477 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,479 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,481 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,483 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,486 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,488 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,492 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,494 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,496 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,498 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,501 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,503 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,505 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2022-11-08T22:45:08,507 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,509 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/header.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,512 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_time_funcs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,514 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,516 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/sam_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2022-11-08T22:45:08,519 creating build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,520 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcmp.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,522 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/call.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,524 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,526 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/convert.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,528 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/rbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,530 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,532 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/prob1.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,534 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,536 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kmin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,538 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hclust.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,540 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,541 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,543 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gvcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,545 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/extsort.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,547 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/utlist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,550 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/cols.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,552 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,554 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hex.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,556 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,558 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/str_finder.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,560 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,562 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mw.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,566 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bcftools.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,568 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/abuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,570 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/HMM.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,573 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/filter.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,574 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,577 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,579 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,581 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kheap.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,583 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/variantkey.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,586 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,588 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ploidy.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2022-11-08T22:45:08,591 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,592 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,594 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,596 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,597 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,599 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_opts.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,601 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/tmp_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,603 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/splaysort.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,605 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,607 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,609 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,611 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/consensus_pileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,613 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats_isize.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,615 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,617 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2022-11-08T22:45:08,619 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,621 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,622 copying build/lib.linux-armv7l-cpython-39/pysam/version.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,624 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,626 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,654 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,656 copying build/lib.linux-armv7l-cpython-39/pysam/Pileup.py -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,658 copying build/lib.linux-armv7l-cpython-39/pysam/version.h -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,660 copying build/lib.linux-armv7l-cpython-39/pysam/csamtools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,662 copying build/lib.linux-armv7l-cpython-39/pysam/version.py -> build/bdist.linux-armv7l/wheel/pysam 2022-11-08T22:45:08,663 running install_egg_info 2022-11-08T22:45:08,722 running egg_info 2022-11-08T22:45:08,742 writing pysam.egg-info/PKG-INFO 2022-11-08T22:45:08,744 writing dependency_links to pysam.egg-info/dependency_links.txt 2022-11-08T22:45:08,747 writing top-level names to pysam.egg-info/top_level.txt 2022-11-08T22:45:08,827 reading manifest file 'pysam.egg-info/SOURCES.txt' 2022-11-08T22:45:08,865 reading manifest template 'MANIFEST.in' 2022-11-08T22:45:08,866 warning: no files found matching 'KNOWN_BUGS' 2022-11-08T22:45:08,866 warning: no files found matching 'THANKS' 2022-11-08T22:45:08,875 no previously-included directories found matching 'tests/' 2022-11-08T22:45:09,030 adding license file 'COPYING' 2022-11-08T22:45:09,030 adding license file 'AUTHORS' 2022-11-08T22:45:09,058 writing manifest file 'pysam.egg-info/SOURCES.txt' 2022-11-08T22:45:09,060 Copying pysam.egg-info to build/bdist.linux-armv7l/wheel/pysam-0.20.0-py3.9.egg-info 2022-11-08T22:45:09,072 running install_scripts 2022-11-08T22:45:09,145 adding license file "COPYING" (matched pattern "COPYING*") 2022-11-08T22:45:09,146 adding license file "AUTHORS" (matched pattern "AUTHORS*") 2022-11-08T22:45:09,151 creating build/bdist.linux-armv7l/wheel/pysam-0.20.0.dist-info/WHEEL 2022-11-08T22:45:09,154 creating '/tmp/pip-wheel-4k_ooexn/pysam-0.20.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-08T22:45:09,158 adding 'pysam/Pileup.py' 2022-11-08T22:45:09,160 adding 'pysam/__init__.py' 2022-11-08T22:45:09,161 adding 'pysam/bcftools.py' 2022-11-08T22:45:09,163 adding 'pysam/cbcftools_util.h' 2022-11-08T22:45:09,164 adding 'pysam/config.py' 2022-11-08T22:45:09,165 adding 'pysam/csamtools_util.h' 2022-11-08T22:45:09,166 adding 'pysam/htslib_util.h' 2022-11-08T22:45:09,802 adding 'pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:09,825 adding 'pysam/libcalignedsegment.pxd' 2022-11-08T22:45:09,826 adding 'pysam/libcalignedsegment.pyi' 2022-11-08T22:45:10,315 adding 'pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:10,332 adding 'pysam/libcalignmentfile.pxd' 2022-11-08T22:45:10,334 adding 'pysam/libcalignmentfile.pyi' 2022-11-08T22:45:11,153 adding 'pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:11,184 adding 'pysam/libcbcf.pxd' 2022-11-08T22:45:11,186 adding 'pysam/libcbcf.pyi' 2022-11-08T22:45:12,087 adding 'pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:12,112 adding 'pysam/libcbcftools.pxd' 2022-11-08T22:45:12,113 adding 'pysam/libcbcftools.pyi' 2022-11-08T22:45:12,188 adding 'pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:12,191 adding 'pysam/libcbgzf.pyi' 2022-11-08T22:45:12,358 adding 'pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:12,365 adding 'pysam/libcfaidx.pxd' 2022-11-08T22:45:12,366 adding 'pysam/libcfaidx.pyi' 2022-11-08T22:45:13,573 adding 'pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:13,620 adding 'pysam/libchtslib.pxd' 2022-11-08T22:45:13,622 adding 'pysam/libchtslib.pyi' 2022-11-08T22:45:13,650 adding 'pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:13,652 adding 'pysam/libcsamfile.pxd' 2022-11-08T22:45:13,654 adding 'pysam/libcsamfile.pyi' 2022-11-08T22:45:14,245 adding 'pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:14,263 adding 'pysam/libcsamtools.pxd' 2022-11-08T22:45:14,264 adding 'pysam/libcsamtools.pyi' 2022-11-08T22:45:14,507 adding 'pysam/libctabix.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:14,517 adding 'pysam/libctabix.pxd' 2022-11-08T22:45:14,518 adding 'pysam/libctabix.pyi' 2022-11-08T22:45:14,773 adding 'pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:14,782 adding 'pysam/libctabixproxies.pxd' 2022-11-08T22:45:14,784 adding 'pysam/libctabixproxies.pyi' 2022-11-08T22:45:14,924 adding 'pysam/libcutils.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:14,929 adding 'pysam/libcutils.pxd' 2022-11-08T22:45:14,931 adding 'pysam/libcutils.pyi' 2022-11-08T22:45:15,487 adding 'pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so' 2022-11-08T22:45:15,505 adding 'pysam/libcvcf.pxd' 2022-11-08T22:45:15,507 adding 'pysam/libcvcf.pyi' 2022-11-08T22:45:15,508 adding 'pysam/py.typed' 2022-11-08T22:45:15,509 adding 'pysam/pysam_stream.h' 2022-11-08T22:45:15,510 adding 'pysam/pysam_util.h' 2022-11-08T22:45:15,512 adding 'pysam/samtools.py' 2022-11-08T22:45:15,513 adding 'pysam/utils.py' 2022-11-08T22:45:15,515 adding 'pysam/version.h' 2022-11-08T22:45:15,516 adding 'pysam/version.py' 2022-11-08T22:45:15,517 adding 'pysam/version.pyi' 2022-11-08T22:45:15,519 adding 'pysam/include/__init__.py' 2022-11-08T22:45:15,521 adding 'pysam/include/bcftools/HMM.h' 2022-11-08T22:45:15,523 adding 'pysam/include/bcftools/abuf.h' 2022-11-08T22:45:15,525 adding 'pysam/include/bcftools/bam2bcf.h' 2022-11-08T22:45:15,526 adding 'pysam/include/bcftools/bam_sample.h' 2022-11-08T22:45:15,527 adding 'pysam/include/bcftools/bcftools.h' 2022-11-08T22:45:15,529 adding 'pysam/include/bcftools/bcftools.pysam.h' 2022-11-08T22:45:15,530 adding 'pysam/include/bcftools/bin.h' 2022-11-08T22:45:15,531 adding 'pysam/include/bcftools/call.h' 2022-11-08T22:45:15,533 adding 'pysam/include/bcftools/cols.h' 2022-11-08T22:45:15,534 adding 'pysam/include/bcftools/config.h' 2022-11-08T22:45:15,535 adding 'pysam/include/bcftools/convert.h' 2022-11-08T22:45:15,536 adding 'pysam/include/bcftools/dbuf.h' 2022-11-08T22:45:15,538 adding 'pysam/include/bcftools/dist.h' 2022-11-08T22:45:15,539 adding 'pysam/include/bcftools/extsort.h' 2022-11-08T22:45:15,540 adding 'pysam/include/bcftools/filter.h' 2022-11-08T22:45:15,542 adding 'pysam/include/bcftools/gvcf.h' 2022-11-08T22:45:15,543 adding 'pysam/include/bcftools/hclust.h' 2022-11-08T22:45:15,544 adding 'pysam/include/bcftools/hex.h' 2022-11-08T22:45:15,546 adding 'pysam/include/bcftools/khash_str2str.h' 2022-11-08T22:45:15,547 adding 'pysam/include/bcftools/kheap.h' 2022-11-08T22:45:15,549 adding 'pysam/include/bcftools/kmin.h' 2022-11-08T22:45:15,551 adding 'pysam/include/bcftools/mw.h' 2022-11-08T22:45:15,553 adding 'pysam/include/bcftools/ploidy.h' 2022-11-08T22:45:15,555 adding 'pysam/include/bcftools/prob1.h' 2022-11-08T22:45:15,557 adding 'pysam/include/bcftools/rbuf.h' 2022-11-08T22:45:15,559 adding 'pysam/include/bcftools/regidx.h' 2022-11-08T22:45:15,560 adding 'pysam/include/bcftools/smpl_ilist.h' 2022-11-08T22:45:15,562 adding 'pysam/include/bcftools/str_finder.h' 2022-11-08T22:45:15,563 adding 'pysam/include/bcftools/tsv2vcf.h' 2022-11-08T22:45:15,566 adding 'pysam/include/bcftools/utlist.h' 2022-11-08T22:45:15,569 adding 'pysam/include/bcftools/variantkey.h' 2022-11-08T22:45:15,571 adding 'pysam/include/bcftools/vcfbuf.h' 2022-11-08T22:45:15,573 adding 'pysam/include/bcftools/vcmp.h' 2022-11-08T22:45:15,575 adding 'pysam/include/htslib/bcf_sr_sort.h' 2022-11-08T22:45:15,576 adding 'pysam/include/htslib/config.h' 2022-11-08T22:45:15,578 adding 'pysam/include/htslib/header.h' 2022-11-08T22:45:15,580 adding 'pysam/include/htslib/hfile_internal.h' 2022-11-08T22:45:15,581 adding 'pysam/include/htslib/hts_internal.h' 2022-11-08T22:45:15,583 adding 'pysam/include/htslib/hts_time_funcs.h' 2022-11-08T22:45:15,584 adding 'pysam/include/htslib/sam_internal.h' 2022-11-08T22:45:15,587 adding 'pysam/include/htslib/textutils_internal.h' 2022-11-08T22:45:15,588 adding 'pysam/include/htslib/thread_pool_internal.h' 2022-11-08T22:45:15,592 adding 'pysam/include/htslib/htslib/bgzf.h' 2022-11-08T22:45:15,594 adding 'pysam/include/htslib/htslib/cram.h' 2022-11-08T22:45:15,596 adding 'pysam/include/htslib/htslib/faidx.h' 2022-11-08T22:45:15,599 adding 'pysam/include/htslib/htslib/hfile.h' 2022-11-08T22:45:15,607 adding 'pysam/include/htslib/htslib/hts.h' 2022-11-08T22:45:15,609 adding 'pysam/include/htslib/htslib/hts_defs.h' 2022-11-08T22:45:15,611 adding 'pysam/include/htslib/htslib/hts_endian.h' 2022-11-08T22:45:15,613 adding 'pysam/include/htslib/htslib/hts_expr.h' 2022-11-08T22:45:15,614 adding 'pysam/include/htslib/htslib/hts_log.h' 2022-11-08T22:45:15,615 adding 'pysam/include/htslib/htslib/hts_os.h' 2022-11-08T22:45:15,617 adding 'pysam/include/htslib/htslib/kbitset.h' 2022-11-08T22:45:15,619 adding 'pysam/include/htslib/htslib/kfunc.h' 2022-11-08T22:45:15,622 adding 'pysam/include/htslib/htslib/khash.h' 2022-11-08T22:45:15,623 adding 'pysam/include/htslib/htslib/khash_str2int.h' 2022-11-08T22:45:15,625 adding 'pysam/include/htslib/htslib/klist.h' 2022-11-08T22:45:15,626 adding 'pysam/include/htslib/htslib/knetfile.h' 2022-11-08T22:45:15,627 adding 'pysam/include/htslib/htslib/kroundup.h' 2022-11-08T22:45:15,629 adding 'pysam/include/htslib/htslib/kseq.h' 2022-11-08T22:45:15,631 adding 'pysam/include/htslib/htslib/ksort.h' 2022-11-08T22:45:15,633 adding 'pysam/include/htslib/htslib/kstring.h' 2022-11-08T22:45:15,635 adding 'pysam/include/htslib/htslib/regidx.h' 2022-11-08T22:45:15,647 adding 'pysam/include/htslib/htslib/sam.h' 2022-11-08T22:45:15,650 adding 'pysam/include/htslib/htslib/synced_bcf_reader.h' 2022-11-08T22:45:15,652 adding 'pysam/include/htslib/htslib/tbx.h' 2022-11-08T22:45:15,654 adding 'pysam/include/htslib/htslib/thread_pool.h' 2022-11-08T22:45:15,662 adding 'pysam/include/htslib/htslib/vcf.h' 2022-11-08T22:45:15,664 adding 'pysam/include/htslib/htslib/vcf_sweep.h' 2022-11-08T22:45:15,666 adding 'pysam/include/htslib/htslib/vcfutils.h' 2022-11-08T22:45:15,668 adding 'pysam/include/samtools/bam.h' 2022-11-08T22:45:15,669 adding 'pysam/include/samtools/bam_ampliconclip.h' 2022-11-08T22:45:15,670 adding 'pysam/include/samtools/bam_lpileup.h' 2022-11-08T22:45:15,672 adding 'pysam/include/samtools/bam_plbuf.h' 2022-11-08T22:45:15,673 adding 'pysam/include/samtools/bedidx.h' 2022-11-08T22:45:15,674 adding 'pysam/include/samtools/config.h' 2022-11-08T22:45:15,675 adding 'pysam/include/samtools/consensus_pileup.h' 2022-11-08T22:45:15,677 adding 'pysam/include/samtools/sam_opts.h' 2022-11-08T22:45:15,678 adding 'pysam/include/samtools/sample.h' 2022-11-08T22:45:15,679 adding 'pysam/include/samtools/samtools.h' 2022-11-08T22:45:15,680 adding 'pysam/include/samtools/samtools.pysam.h' 2022-11-08T22:45:15,682 adding 'pysam/include/samtools/splaysort.h' 2022-11-08T22:45:15,684 adding 'pysam/include/samtools/stats_isize.h' 2022-11-08T22:45:15,685 adding 'pysam/include/samtools/tmp_file.h' 2022-11-08T22:45:15,687 adding 'pysam-0.20.0.dist-info/AUTHORS' 2022-11-08T22:45:15,688 adding 'pysam-0.20.0.dist-info/COPYING' 2022-11-08T22:45:15,689 adding 'pysam-0.20.0.dist-info/METADATA' 2022-11-08T22:45:15,690 adding 'pysam-0.20.0.dist-info/WHEEL' 2022-11-08T22:45:15,691 adding 'pysam-0.20.0.dist-info/top_level.txt' 2022-11-08T22:45:15,693 adding 'pysam-0.20.0.dist-info/RECORD' 2022-11-08T22:45:15,874 removing build/bdist.linux-armv7l/wheel 2022-11-08T22:45:16,085 Building wheel for pysam (setup.py): finished with status 'done' 2022-11-08T22:45:16,237 Created wheel for pysam: filename=pysam-0.20.0-cp39-cp39-linux_armv7l.whl size=11557170 sha256=02833470b689b5f0801b783b4d39663d1fd225749f8246f0e0e22c31894a30ee 2022-11-08T22:45:16,239 Stored in directory: /tmp/pip-ephem-wheel-cache-pg4s6u8k/wheels/4f/74/21/41864a15534e1b71c8e6495213c65f114fb9d2743c6a58dc23 2022-11-08T22:45:16,267 Successfully built pysam 2022-11-08T22:45:16,609 Removed build tracker: '/tmp/pip-build-tracker-yh06a4cd'