2022-11-14T09:36:28,543 Created temporary directory: /tmp/pip-ephem-wheel-cache-i4sprjlx 2022-11-14T09:36:28,547 Created temporary directory: /tmp/pip-build-tracker-7w3a_brz 2022-11-14T09:36:28,548 Initialized build tracking at /tmp/pip-build-tracker-7w3a_brz 2022-11-14T09:36:28,548 Created build tracker: /tmp/pip-build-tracker-7w3a_brz 2022-11-14T09:36:28,549 Entered build tracker: /tmp/pip-build-tracker-7w3a_brz 2022-11-14T09:36:28,550 Created temporary directory: /tmp/pip-wheel-cztiu9g5 2022-11-14T09:36:28,558 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev4-py2.py3-none-any.whl#sha256=f8287860bf6f524db3bd2d9096b97595aecea1a1e321065d5e36d971f5cd7b79 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2022-11-14T09:36:29,216 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev3-py2.py3-none-any.whl#sha256=c11cefb2c969b6e74729ae125693e5bf5401218df9615d22a68b3a5d8ce68122 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2022-11-14T09:36:29,217 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev2-py2.py3-none-any.whl#sha256=62e79b75dc27fa398c1e33a336b253d18de3fc94880fe567b3ee01fd081c6d5c (from https://www.piwheels.org/simple/galaxy-tool-util/) 2022-11-14T09:36:29,217 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev1-py2.py3-none-any.whl#sha256=7ff286949cb2c87a462ef1360b4ff58a3d0fc953dfde646f2b23bc9438d63ada (from https://www.piwheels.org/simple/galaxy-tool-util/) 2022-11-14T09:36:29,218 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev0-py3-none-any.whl#sha256=f3257799e554be8d31f640710ed8672994323cbfda020a3648775c6d156fad4a (from https://www.piwheels.org/simple/galaxy-tool-util/) 2022-11-14T09:36:29,219 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-tool-util/ 2022-11-14T09:36:29,219 Skipping link: not a file: https://pypi.org/simple/galaxy-tool-util/ 2022-11-14T09:36:29,262 Given no hashes to check 1 links for project 'galaxy-tool-util': discarding no candidates 2022-11-14T09:36:29,293 Collecting galaxy-tool-util==22.1.5 2022-11-14T09:36:29,298 Created temporary directory: /tmp/pip-unpack-p_f9h79_ 2022-11-14T09:36:29,587 Downloading galaxy-tool-util-22.1.5.tar.gz (351 kB) 2022-11-14T09:36:30,632 Added galaxy-tool-util==22.1.5 from https://files.pythonhosted.org/packages/fd/a1/e4508ca44ba60b6d0ad1b78d8f4afc721a8b95f7cddedda97f5677b80ba8/galaxy-tool-util-22.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-7w3a_brz' 2022-11-14T09:36:30,635 Running setup.py (path:/tmp/pip-wheel-cztiu9g5/galaxy-tool-util_679e4d21b85b4919b0d7472c7e456e10/setup.py) egg_info for package galaxy-tool-util 2022-11-14T09:36:30,637 Created temporary directory: /tmp/pip-pip-egg-info-gnq52mjb 2022-11-14T09:36:30,637 Preparing metadata (setup.py): started 2022-11-14T09:36:30,639 Running command python setup.py egg_info 2022-11-14T09:36:38,752 running egg_info 2022-11-14T09:36:38,758 creating /tmp/pip-pip-egg-info-gnq52mjb/galaxy_tool_util.egg-info 2022-11-14T09:36:38,820 writing /tmp/pip-pip-egg-info-gnq52mjb/galaxy_tool_util.egg-info/PKG-INFO 2022-11-14T09:36:38,825 writing dependency_links to /tmp/pip-pip-egg-info-gnq52mjb/galaxy_tool_util.egg-info/dependency_links.txt 2022-11-14T09:36:38,830 writing entry points to /tmp/pip-pip-egg-info-gnq52mjb/galaxy_tool_util.egg-info/entry_points.txt 2022-11-14T09:36:38,832 writing requirements to /tmp/pip-pip-egg-info-gnq52mjb/galaxy_tool_util.egg-info/requires.txt 2022-11-14T09:36:38,834 writing top-level names to /tmp/pip-pip-egg-info-gnq52mjb/galaxy_tool_util.egg-info/top_level.txt 2022-11-14T09:36:38,837 writing manifest file '/tmp/pip-pip-egg-info-gnq52mjb/galaxy_tool_util.egg-info/SOURCES.txt' 2022-11-14T09:36:39,082 reading manifest file '/tmp/pip-pip-egg-info-gnq52mjb/galaxy_tool_util.egg-info/SOURCES.txt' 2022-11-14T09:36:39,085 reading manifest template 'MANIFEST.in' 2022-11-14T09:36:39,094 adding license file 'LICENSE' 2022-11-14T09:36:39,111 writing manifest file '/tmp/pip-pip-egg-info-gnq52mjb/galaxy_tool_util.egg-info/SOURCES.txt' 2022-11-14T09:36:39,320 Preparing metadata (setup.py): finished with status 'done' 2022-11-14T09:36:39,334 Source in /tmp/pip-wheel-cztiu9g5/galaxy-tool-util_679e4d21b85b4919b0d7472c7e456e10 has version 22.1.5, which satisfies requirement galaxy-tool-util==22.1.5 from https://files.pythonhosted.org/packages/fd/a1/e4508ca44ba60b6d0ad1b78d8f4afc721a8b95f7cddedda97f5677b80ba8/galaxy-tool-util-22.1.5.tar.gz 2022-11-14T09:36:39,336 Removed galaxy-tool-util==22.1.5 from https://files.pythonhosted.org/packages/fd/a1/e4508ca44ba60b6d0ad1b78d8f4afc721a8b95f7cddedda97f5677b80ba8/galaxy-tool-util-22.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-7w3a_brz' 2022-11-14T09:36:39,348 Created temporary directory: /tmp/pip-unpack-i8mr5x79 2022-11-14T09:36:39,349 Building wheels for collected packages: galaxy-tool-util 2022-11-14T09:36:39,359 Created temporary directory: /tmp/pip-wheel-n9q6fwyj 2022-11-14T09:36:39,359 Building wheel for galaxy-tool-util (setup.py): started 2022-11-14T09:36:39,361 Destination directory: /tmp/pip-wheel-n9q6fwyj 2022-11-14T09:36:39,362 Running command python setup.py bdist_wheel 2022-11-14T09:36:47,443 running bdist_wheel 2022-11-14T09:36:47,571 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-11-14T09:36:48,180 running build 2022-11-14T09:36:48,180 running build_py 2022-11-14T09:36:48,254 creating build 2022-11-14T09:36:48,255 creating build/lib 2022-11-14T09:36:48,256 creating build/lib/galaxy 2022-11-14T09:36:48,258 copying galaxy/__init__.py -> build/lib/galaxy 2022-11-14T09:36:48,262 copying galaxy/project_galaxy_tool_util.py -> build/lib/galaxy 2022-11-14T09:36:48,268 creating build/lib/galaxy/tool_util 2022-11-14T09:36:48,269 copying galaxy/tool_util/__init__.py -> build/lib/galaxy/tool_util 2022-11-14T09:36:48,273 copying galaxy/tool_util/loader.py -> build/lib/galaxy/tool_util 2022-11-14T09:36:48,276 copying galaxy/tool_util/edam_util.py -> build/lib/galaxy/tool_util 2022-11-14T09:36:48,280 copying galaxy/tool_util/provided_metadata.py -> build/lib/galaxy/tool_util 2022-11-14T09:36:48,285 copying galaxy/tool_util/fetcher.py -> build/lib/galaxy/tool_util 2022-11-14T09:36:48,288 copying galaxy/tool_util/lint.py -> build/lib/galaxy/tool_util 2022-11-14T09:36:48,294 copying galaxy/tool_util/loader_directory.py -> build/lib/galaxy/tool_util 2022-11-14T09:36:48,298 copying galaxy/tool_util/output_checker.py -> build/lib/galaxy/tool_util 2022-11-14T09:36:48,304 creating build/lib/galaxy/tool_util/biotools 2022-11-14T09:36:48,306 copying galaxy/tool_util/biotools/__init__.py -> build/lib/galaxy/tool_util/biotools 2022-11-14T09:36:48,310 copying galaxy/tool_util/biotools/source.py -> build/lib/galaxy/tool_util/biotools 2022-11-14T09:36:48,313 copying galaxy/tool_util/biotools/interface.py -> build/lib/galaxy/tool_util/biotools 2022-11-14T09:36:48,318 creating build/lib/galaxy/tool_util/client 2022-11-14T09:36:48,320 copying galaxy/tool_util/client/__init__.py -> build/lib/galaxy/tool_util/client 2022-11-14T09:36:48,323 copying galaxy/tool_util/client/staging.py -> build/lib/galaxy/tool_util/client 2022-11-14T09:36:48,330 creating build/lib/galaxy/tool_util/cwl 2022-11-14T09:36:48,331 copying galaxy/tool_util/cwl/parser.py -> build/lib/galaxy/tool_util/cwl 2022-11-14T09:36:48,338 copying galaxy/tool_util/cwl/__init__.py -> build/lib/galaxy/tool_util/cwl 2022-11-14T09:36:48,342 copying galaxy/tool_util/cwl/representation.py -> build/lib/galaxy/tool_util/cwl 2022-11-14T09:36:48,347 copying galaxy/tool_util/cwl/runtime_actions.py -> build/lib/galaxy/tool_util/cwl 2022-11-14T09:36:48,351 copying galaxy/tool_util/cwl/util.py -> build/lib/galaxy/tool_util/cwl 2022-11-14T09:36:48,356 copying galaxy/tool_util/cwl/runnable.py -> build/lib/galaxy/tool_util/cwl 2022-11-14T09:36:48,360 copying galaxy/tool_util/cwl/schema.py -> build/lib/galaxy/tool_util/cwl 2022-11-14T09:36:48,363 copying galaxy/tool_util/cwl/cwltool_deps.py -> build/lib/galaxy/tool_util/cwl 2022-11-14T09:36:48,370 creating build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,371 copying galaxy/tool_util/deps/dockerfiles.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,375 copying galaxy/tool_util/deps/__init__.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,379 copying galaxy/tool_util/deps/views.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,384 copying galaxy/tool_util/deps/requirements.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,388 copying galaxy/tool_util/deps/singularity_util.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,392 copying galaxy/tool_util/deps/installable.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,395 copying galaxy/tool_util/deps/containers.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,399 copying galaxy/tool_util/deps/conda_compat.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,403 copying galaxy/tool_util/deps/container_classes.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,408 copying galaxy/tool_util/deps/commands.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,411 copying galaxy/tool_util/deps/brew_exts.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,416 copying galaxy/tool_util/deps/conda_util.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,421 copying galaxy/tool_util/deps/dependencies.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,425 copying galaxy/tool_util/deps/docker_util.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,429 copying galaxy/tool_util/deps/brew_util.py -> build/lib/galaxy/tool_util/deps 2022-11-14T09:36:48,434 creating build/lib/galaxy/tool_util/deps/container_resolvers 2022-11-14T09:36:48,436 copying galaxy/tool_util/deps/container_resolvers/mulled.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2022-11-14T09:36:48,441 copying galaxy/tool_util/deps/container_resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2022-11-14T09:36:48,444 copying galaxy/tool_util/deps/container_resolvers/explicit.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2022-11-14T09:36:48,451 creating build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,453 copying galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,456 copying galaxy/tool_util/deps/mulled/__init__.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,459 copying galaxy/tool_util/deps/mulled/mulled_hash.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,463 copying galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,466 copying galaxy/tool_util/deps/mulled/util.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,471 copying galaxy/tool_util/deps/mulled/_cli.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,474 copying galaxy/tool_util/deps/mulled/get_tests.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,479 copying galaxy/tool_util/deps/mulled/mulled_search.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,484 copying galaxy/tool_util/deps/mulled/mulled_list.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,488 copying galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,491 copying galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,495 copying galaxy/tool_util/deps/mulled/mulled_build.py -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:48,502 creating build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,504 copying galaxy/tool_util/deps/resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,508 copying galaxy/tool_util/deps/resolvers/conda.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,513 copying galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,517 copying galaxy/tool_util/deps/resolvers/modules.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,521 copying galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,525 copying galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,528 copying galaxy/tool_util/deps/resolvers/lmod.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,532 copying galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,536 copying galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,540 copying galaxy/tool_util/deps/resolvers/homebrew.py -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:48,546 creating build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,547 copying galaxy/tool_util/linters/inputs.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,552 copying galaxy/tool_util/linters/citations.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,556 copying galaxy/tool_util/linters/stdio.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,559 copying galaxy/tool_util/linters/outputs.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,563 copying galaxy/tool_util/linters/__init__.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,566 copying galaxy/tool_util/linters/general.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,569 copying galaxy/tool_util/linters/tests.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,573 copying galaxy/tool_util/linters/command.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,577 copying galaxy/tool_util/linters/xml_order.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,580 copying galaxy/tool_util/linters/_util.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,584 copying galaxy/tool_util/linters/help.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,587 copying galaxy/tool_util/linters/cwl.py -> build/lib/galaxy/tool_util/linters 2022-11-14T09:36:48,592 creating build/lib/galaxy/tool_util/locations 2022-11-14T09:36:48,593 copying galaxy/tool_util/locations/__init__.py -> build/lib/galaxy/tool_util/locations 2022-11-14T09:36:48,597 copying galaxy/tool_util/locations/file.py -> build/lib/galaxy/tool_util/locations 2022-11-14T09:36:48,600 copying galaxy/tool_util/locations/http.py -> build/lib/galaxy/tool_util/locations 2022-11-14T09:36:48,604 copying galaxy/tool_util/locations/dockstore.py -> build/lib/galaxy/tool_util/locations 2022-11-14T09:36:48,609 creating build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,611 copying galaxy/tool_util/parser/output_actions.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,616 copying galaxy/tool_util/parser/stdio.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,620 copying galaxy/tool_util/parser/output_collection_def.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,624 copying galaxy/tool_util/parser/__init__.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,627 copying galaxy/tool_util/parser/util.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,631 copying galaxy/tool_util/parser/interface.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,635 copying galaxy/tool_util/parser/factory.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,639 copying galaxy/tool_util/parser/output_objects.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,644 copying galaxy/tool_util/parser/yaml.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,648 copying galaxy/tool_util/parser/xml.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,656 copying galaxy/tool_util/parser/cwl.py -> build/lib/galaxy/tool_util/parser 2022-11-14T09:36:48,662 creating build/lib/galaxy/tool_util/toolbox 2022-11-14T09:36:48,664 copying galaxy/tool_util/toolbox/parser.py -> build/lib/galaxy/tool_util/toolbox 2022-11-14T09:36:48,669 copying galaxy/tool_util/toolbox/integrated_panel.py -> build/lib/galaxy/tool_util/toolbox 2022-11-14T09:36:48,673 copying galaxy/tool_util/toolbox/__init__.py -> build/lib/galaxy/tool_util/toolbox 2022-11-14T09:36:48,677 copying galaxy/tool_util/toolbox/tags.py -> build/lib/galaxy/tool_util/toolbox 2022-11-14T09:36:48,681 copying galaxy/tool_util/toolbox/base.py -> build/lib/galaxy/tool_util/toolbox 2022-11-14T09:36:48,689 copying galaxy/tool_util/toolbox/panel.py -> build/lib/galaxy/tool_util/toolbox 2022-11-14T09:36:48,694 copying galaxy/tool_util/toolbox/watcher.py -> build/lib/galaxy/tool_util/toolbox 2022-11-14T09:36:48,700 creating build/lib/galaxy/tool_util/toolbox/filters 2022-11-14T09:36:48,702 copying galaxy/tool_util/toolbox/filters/__init__.py -> build/lib/galaxy/tool_util/toolbox/filters 2022-11-14T09:36:48,708 creating build/lib/galaxy/tool_util/toolbox/lineages 2022-11-14T09:36:48,710 copying galaxy/tool_util/toolbox/lineages/__init__.py -> build/lib/galaxy/tool_util/toolbox/lineages 2022-11-14T09:36:48,714 copying galaxy/tool_util/toolbox/lineages/interface.py -> build/lib/galaxy/tool_util/toolbox/lineages 2022-11-14T09:36:48,718 copying galaxy/tool_util/toolbox/lineages/factory.py -> build/lib/galaxy/tool_util/toolbox/lineages 2022-11-14T09:36:48,724 creating build/lib/galaxy/tool_util/toolbox/views 2022-11-14T09:36:48,726 copying galaxy/tool_util/toolbox/views/__init__.py -> build/lib/galaxy/tool_util/toolbox/views 2022-11-14T09:36:48,730 copying galaxy/tool_util/toolbox/views/interface.py -> build/lib/galaxy/tool_util/toolbox/views 2022-11-14T09:36:48,734 copying galaxy/tool_util/toolbox/views/sources.py -> build/lib/galaxy/tool_util/toolbox/views 2022-11-14T09:36:48,738 copying galaxy/tool_util/toolbox/views/edam.py -> build/lib/galaxy/tool_util/toolbox/views 2022-11-14T09:36:48,742 copying galaxy/tool_util/toolbox/views/definitions.py -> build/lib/galaxy/tool_util/toolbox/views 2022-11-14T09:36:48,746 copying galaxy/tool_util/toolbox/views/static.py -> build/lib/galaxy/tool_util/toolbox/views 2022-11-14T09:36:48,751 creating build/lib/galaxy/tool_util/unittest_utils 2022-11-14T09:36:48,753 copying galaxy/tool_util/unittest_utils/__init__.py -> build/lib/galaxy/tool_util/unittest_utils 2022-11-14T09:36:48,756 copying galaxy/tool_util/unittest_utils/sample_data.py -> build/lib/galaxy/tool_util/unittest_utils 2022-11-14T09:36:48,761 creating build/lib/galaxy/tool_util/verify 2022-11-14T09:36:48,763 copying galaxy/tool_util/verify/__init__.py -> build/lib/galaxy/tool_util/verify 2022-11-14T09:36:48,768 copying galaxy/tool_util/verify/wait.py -> build/lib/galaxy/tool_util/verify 2022-11-14T09:36:48,772 copying galaxy/tool_util/verify/interactor.py -> build/lib/galaxy/tool_util/verify 2022-11-14T09:36:48,780 copying galaxy/tool_util/verify/script.py -> build/lib/galaxy/tool_util/verify 2022-11-14T09:36:48,786 copying galaxy/tool_util/verify/test_data.py -> build/lib/galaxy/tool_util/verify 2022-11-14T09:36:48,791 creating build/lib/galaxy/tool_util/verify/asserts 2022-11-14T09:36:48,792 copying galaxy/tool_util/verify/asserts/__init__.py -> build/lib/galaxy/tool_util/verify/asserts 2022-11-14T09:36:48,797 copying galaxy/tool_util/verify/asserts/tabular.py -> build/lib/galaxy/tool_util/verify/asserts 2022-11-14T09:36:48,801 copying galaxy/tool_util/verify/asserts/text.py -> build/lib/galaxy/tool_util/verify/asserts 2022-11-14T09:36:48,805 copying galaxy/tool_util/verify/asserts/_util.py -> build/lib/galaxy/tool_util/verify/asserts 2022-11-14T09:36:48,809 copying galaxy/tool_util/verify/asserts/size.py -> build/lib/galaxy/tool_util/verify/asserts 2022-11-14T09:36:48,812 copying galaxy/tool_util/verify/asserts/hdf5.py -> build/lib/galaxy/tool_util/verify/asserts 2022-11-14T09:36:48,816 copying galaxy/tool_util/verify/asserts/archive.py -> build/lib/galaxy/tool_util/verify/asserts 2022-11-14T09:36:48,819 copying galaxy/tool_util/verify/asserts/xml.py -> build/lib/galaxy/tool_util/verify/asserts 2022-11-14T09:36:48,823 running egg_info 2022-11-14T09:36:48,973 writing galaxy_tool_util.egg-info/PKG-INFO 2022-11-14T09:36:48,976 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2022-11-14T09:36:48,981 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2022-11-14T09:36:48,984 writing requirements to galaxy_tool_util.egg-info/requires.txt 2022-11-14T09:36:48,986 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2022-11-14T09:36:49,096 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2022-11-14T09:36:49,130 reading manifest template 'MANIFEST.in' 2022-11-14T09:36:49,138 adding license file 'LICENSE' 2022-11-14T09:36:49,168 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2022-11-14T09:36:49,179 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'galaxy.tool_util.xsd' as data is deprecated, please list it in `packages`. 2022-11-14T09:36:49,180 !! 2022-11-14T09:36:49,180 ############################ 2022-11-14T09:36:49,181 # Package would be ignored # 2022-11-14T09:36:49,181 ############################ 2022-11-14T09:36:49,181 Python recognizes 'galaxy.tool_util.xsd' as an importable package, 2022-11-14T09:36:49,182 but it is not listed in the `packages` configuration of setuptools. 2022-11-14T09:36:49,182 'galaxy.tool_util.xsd' has been automatically added to the distribution only 2022-11-14T09:36:49,182 because it may contain data files, but this behavior is likely to change 2022-11-14T09:36:49,183 in future versions of setuptools (and therefore is considered deprecated). 2022-11-14T09:36:49,183 Please make sure that 'galaxy.tool_util.xsd' is included as a package by using 2022-11-14T09:36:49,184 the `packages` configuration field or the proper discovery methods 2022-11-14T09:36:49,184 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-14T09:36:49,184 instead of `find_packages(...)`/`find:`). 2022-11-14T09:36:49,185 You can read more about "package discovery" and "data files" on setuptools 2022-11-14T09:36:49,185 documentation page. 2022-11-14T09:36:49,186 !! 2022-11-14T09:36:49,187 check.warn(importable) 2022-11-14T09:36:49,192 copying galaxy/tool_util/deps/mulled/invfile.lua -> build/lib/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,196 copying galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/lib/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,200 creating build/lib/galaxy/tool_util/xsd 2022-11-14T09:36:49,202 copying galaxy/tool_util/xsd/galaxy.xsd -> build/lib/galaxy/tool_util/xsd 2022-11-14T09:36:49,225 copying galaxy/tool_util/xsd/LICENSE -> build/lib/galaxy/tool_util/xsd 2022-11-14T09:36:49,229 copying galaxy/tool_util/xsd/README.md -> build/lib/galaxy/tool_util/xsd 2022-11-14T09:36:49,233 copying galaxy/tool_util/xsd/galaxy.jxb -> build/lib/galaxy/tool_util/xsd 2022-11-14T09:36:49,240 copying galaxy/tool_util/toolbox/filters/examples.py.sample -> build/lib/galaxy/tool_util/toolbox/filters 2022-11-14T09:36:49,244 copying galaxy/tool_util/verify/test_config.sample.yml -> build/lib/galaxy/tool_util/verify 2022-11-14T09:36:49,349 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-14T09:36:49,349 setuptools.SetuptoolsDeprecationWarning, 2022-11-14T09:36:49,413 installing to build/bdist.linux-armv7l/wheel 2022-11-14T09:36:49,414 running install 2022-11-14T09:36:49,476 running install_lib 2022-11-14T09:36:49,544 creating build/bdist.linux-armv7l 2022-11-14T09:36:49,545 creating build/bdist.linux-armv7l/wheel 2022-11-14T09:36:49,548 creating build/bdist.linux-armv7l/wheel/galaxy 2022-11-14T09:36:49,550 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2022-11-14T09:36:49,556 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-11-14T09:36:49,558 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2022-11-14T09:36:49,560 copying build/lib/galaxy/tool_util/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2022-11-14T09:36:49,564 copying build/lib/galaxy/tool_util/unittest_utils/sample_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2022-11-14T09:36:49,568 copying build/lib/galaxy/tool_util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-11-14T09:36:49,572 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-11-14T09:36:49,573 copying build/lib/galaxy/tool_util/verify/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-11-14T09:36:49,580 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-11-14T09:36:49,582 copying build/lib/galaxy/tool_util/verify/asserts/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-11-14T09:36:49,586 copying build/lib/galaxy/tool_util/verify/asserts/tabular.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-11-14T09:36:49,590 copying build/lib/galaxy/tool_util/verify/asserts/text.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-11-14T09:36:49,594 copying build/lib/galaxy/tool_util/verify/asserts/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-11-14T09:36:49,598 copying build/lib/galaxy/tool_util/verify/asserts/size.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-11-14T09:36:49,602 copying build/lib/galaxy/tool_util/verify/asserts/hdf5.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-11-14T09:36:49,606 copying build/lib/galaxy/tool_util/verify/asserts/archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-11-14T09:36:49,610 copying build/lib/galaxy/tool_util/verify/asserts/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2022-11-14T09:36:49,615 copying build/lib/galaxy/tool_util/verify/wait.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-11-14T09:36:49,618 copying build/lib/galaxy/tool_util/verify/interactor.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-11-14T09:36:49,625 copying build/lib/galaxy/tool_util/verify/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-11-14T09:36:49,630 copying build/lib/galaxy/tool_util/verify/test_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-11-14T09:36:49,634 copying build/lib/galaxy/tool_util/verify/test_config.sample.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2022-11-14T09:36:49,637 copying build/lib/galaxy/tool_util/loader.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-11-14T09:36:49,641 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-11-14T09:36:49,642 copying build/lib/galaxy/tool_util/locations/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-11-14T09:36:49,646 copying build/lib/galaxy/tool_util/locations/file.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-11-14T09:36:49,649 copying build/lib/galaxy/tool_util/locations/http.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-11-14T09:36:49,652 copying build/lib/galaxy/tool_util/locations/dockstore.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2022-11-14T09:36:49,655 copying build/lib/galaxy/tool_util/edam_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-11-14T09:36:49,659 copying build/lib/galaxy/tool_util/provided_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-11-14T09:36:49,664 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2022-11-14T09:36:49,665 copying build/lib/galaxy/tool_util/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2022-11-14T09:36:49,668 copying build/lib/galaxy/tool_util/biotools/source.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2022-11-14T09:36:49,671 copying build/lib/galaxy/tool_util/biotools/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2022-11-14T09:36:49,676 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,677 copying build/lib/galaxy/tool_util/deps/dockerfiles.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,681 copying build/lib/galaxy/tool_util/deps/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,686 copying build/lib/galaxy/tool_util/deps/views.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,690 copying build/lib/galaxy/tool_util/deps/requirements.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,696 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,697 copying build/lib/galaxy/tool_util/deps/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,701 copying build/lib/galaxy/tool_util/deps/resolvers/conda.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,706 copying build/lib/galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,709 copying build/lib/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,713 copying build/lib/galaxy/tool_util/deps/resolvers/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,717 copying build/lib/galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,720 copying build/lib/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,724 copying build/lib/galaxy/tool_util/deps/resolvers/lmod.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,728 copying build/lib/galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,732 copying build/lib/galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,735 copying build/lib/galaxy/tool_util/deps/resolvers/homebrew.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2022-11-14T09:36:49,738 copying build/lib/galaxy/tool_util/deps/singularity_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,741 copying build/lib/galaxy/tool_util/deps/installable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,745 copying build/lib/galaxy/tool_util/deps/containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,749 copying build/lib/galaxy/tool_util/deps/conda_compat.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,752 copying build/lib/galaxy/tool_util/deps/container_classes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,758 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2022-11-14T09:36:49,760 copying build/lib/galaxy/tool_util/deps/container_resolvers/mulled.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2022-11-14T09:36:49,765 copying build/lib/galaxy/tool_util/deps/container_resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2022-11-14T09:36:49,769 copying build/lib/galaxy/tool_util/deps/container_resolvers/explicit.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2022-11-14T09:36:49,773 copying build/lib/galaxy/tool_util/deps/commands.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,776 copying build/lib/galaxy/tool_util/deps/brew_exts.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,781 copying build/lib/galaxy/tool_util/deps/conda_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,786 copying build/lib/galaxy/tool_util/deps/dependencies.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,791 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,792 copying build/lib/galaxy/tool_util/deps/mulled/invfile.lua -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,795 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,799 copying build/lib/galaxy/tool_util/deps/mulled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,801 copying build/lib/galaxy/tool_util/deps/mulled/mulled_hash.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,805 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,808 copying build/lib/galaxy/tool_util/deps/mulled/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,812 copying build/lib/galaxy/tool_util/deps/mulled/_cli.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,815 copying build/lib/galaxy/tool_util/deps/mulled/get_tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,819 copying build/lib/galaxy/tool_util/deps/mulled/mulled_search.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,824 copying build/lib/galaxy/tool_util/deps/mulled/mulled_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,827 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,830 copying build/lib/galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,834 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2022-11-14T09:36:49,839 copying build/lib/galaxy/tool_util/deps/docker_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,842 copying build/lib/galaxy/tool_util/deps/brew_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2022-11-14T09:36:49,847 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-11-14T09:36:49,848 copying build/lib/galaxy/tool_util/toolbox/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-11-14T09:36:49,852 copying build/lib/galaxy/tool_util/toolbox/integrated_panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-11-14T09:36:49,856 copying build/lib/galaxy/tool_util/toolbox/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-11-14T09:36:49,859 copying build/lib/galaxy/tool_util/toolbox/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-11-14T09:36:49,863 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2022-11-14T09:36:49,865 copying build/lib/galaxy/tool_util/toolbox/filters/examples.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2022-11-14T09:36:49,869 copying build/lib/galaxy/tool_util/toolbox/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2022-11-14T09:36:49,872 copying build/lib/galaxy/tool_util/toolbox/base.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-11-14T09:36:49,879 copying build/lib/galaxy/tool_util/toolbox/panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-11-14T09:36:49,883 copying build/lib/galaxy/tool_util/toolbox/watcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2022-11-14T09:36:49,888 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-11-14T09:36:49,889 copying build/lib/galaxy/tool_util/toolbox/views/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-11-14T09:36:49,892 copying build/lib/galaxy/tool_util/toolbox/views/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-11-14T09:36:49,895 copying build/lib/galaxy/tool_util/toolbox/views/sources.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-11-14T09:36:49,898 copying build/lib/galaxy/tool_util/toolbox/views/edam.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-11-14T09:36:49,902 copying build/lib/galaxy/tool_util/toolbox/views/definitions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-11-14T09:36:49,905 copying build/lib/galaxy/tool_util/toolbox/views/static.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2022-11-14T09:36:49,910 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2022-11-14T09:36:49,911 copying build/lib/galaxy/tool_util/toolbox/lineages/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2022-11-14T09:36:49,915 copying build/lib/galaxy/tool_util/toolbox/lineages/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2022-11-14T09:36:49,918 copying build/lib/galaxy/tool_util/toolbox/lineages/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2022-11-14T09:36:49,921 copying build/lib/galaxy/tool_util/fetcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-11-14T09:36:49,925 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2022-11-14T09:36:49,926 copying build/lib/galaxy/tool_util/client/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2022-11-14T09:36:49,929 copying build/lib/galaxy/tool_util/client/staging.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2022-11-14T09:36:49,934 copying build/lib/galaxy/tool_util/lint.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-11-14T09:36:49,940 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-11-14T09:36:49,941 copying build/lib/galaxy/tool_util/cwl/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-11-14T09:36:49,948 copying build/lib/galaxy/tool_util/cwl/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-11-14T09:36:49,951 copying build/lib/galaxy/tool_util/cwl/representation.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-11-14T09:36:49,955 copying build/lib/galaxy/tool_util/cwl/runtime_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-11-14T09:36:49,959 copying build/lib/galaxy/tool_util/cwl/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-11-14T09:36:49,964 copying build/lib/galaxy/tool_util/cwl/runnable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-11-14T09:36:49,967 copying build/lib/galaxy/tool_util/cwl/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-11-14T09:36:49,970 copying build/lib/galaxy/tool_util/cwl/cwltool_deps.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2022-11-14T09:36:49,975 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-11-14T09:36:49,976 copying build/lib/galaxy/tool_util/xsd/LICENSE -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-11-14T09:36:49,980 copying build/lib/galaxy/tool_util/xsd/README.md -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-11-14T09:36:49,983 copying build/lib/galaxy/tool_util/xsd/galaxy.jxb -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-11-14T09:36:49,986 copying build/lib/galaxy/tool_util/xsd/galaxy.xsd -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2022-11-14T09:36:50,007 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,008 copying build/lib/galaxy/tool_util/parser/output_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,013 copying build/lib/galaxy/tool_util/parser/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,017 copying build/lib/galaxy/tool_util/parser/output_collection_def.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,020 copying build/lib/galaxy/tool_util/parser/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,023 copying build/lib/galaxy/tool_util/parser/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,026 copying build/lib/galaxy/tool_util/parser/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,031 copying build/lib/galaxy/tool_util/parser/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,035 copying build/lib/galaxy/tool_util/parser/output_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,039 copying build/lib/galaxy/tool_util/parser/yaml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,043 copying build/lib/galaxy/tool_util/parser/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,049 copying build/lib/galaxy/tool_util/parser/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2022-11-14T09:36:50,054 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,055 copying build/lib/galaxy/tool_util/linters/inputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,060 copying build/lib/galaxy/tool_util/linters/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,064 copying build/lib/galaxy/tool_util/linters/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,067 copying build/lib/galaxy/tool_util/linters/outputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,071 copying build/lib/galaxy/tool_util/linters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,074 copying build/lib/galaxy/tool_util/linters/general.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,077 copying build/lib/galaxy/tool_util/linters/tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,081 copying build/lib/galaxy/tool_util/linters/command.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,085 copying build/lib/galaxy/tool_util/linters/xml_order.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,088 copying build/lib/galaxy/tool_util/linters/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,091 copying build/lib/galaxy/tool_util/linters/help.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,095 copying build/lib/galaxy/tool_util/linters/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2022-11-14T09:36:50,098 copying build/lib/galaxy/tool_util/loader_directory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-11-14T09:36:50,102 copying build/lib/galaxy/tool_util/output_checker.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2022-11-14T09:36:50,106 copying build/lib/galaxy/project_galaxy_tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy 2022-11-14T09:36:50,109 running install_egg_info 2022-11-14T09:36:50,184 Copying galaxy_tool_util.egg-info to build/bdist.linux-armv7l/wheel/galaxy_tool_util-22.1.5-py3.7.egg-info 2022-11-14T09:36:50,210 running install_scripts 2022-11-14T09:36:50,398 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-11-14T09:36:50,408 creating build/bdist.linux-armv7l/wheel/galaxy_tool_util-22.1.5.dist-info/WHEEL 2022-11-14T09:36:50,412 creating '/tmp/pip-wheel-n9q6fwyj/galaxy_tool_util-22.1.5-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-14T09:36:50,417 adding 'galaxy/__init__.py' 2022-11-14T09:36:50,419 adding 'galaxy/project_galaxy_tool_util.py' 2022-11-14T09:36:50,423 adding 'galaxy/tool_util/__init__.py' 2022-11-14T09:36:50,425 adding 'galaxy/tool_util/edam_util.py' 2022-11-14T09:36:50,428 adding 'galaxy/tool_util/fetcher.py' 2022-11-14T09:36:50,432 adding 'galaxy/tool_util/lint.py' 2022-11-14T09:36:50,434 adding 'galaxy/tool_util/loader.py' 2022-11-14T09:36:50,438 adding 'galaxy/tool_util/loader_directory.py' 2022-11-14T09:36:50,442 adding 'galaxy/tool_util/output_checker.py' 2022-11-14T09:36:50,446 adding 'galaxy/tool_util/provided_metadata.py' 2022-11-14T09:36:50,449 adding 'galaxy/tool_util/biotools/__init__.py' 2022-11-14T09:36:50,451 adding 'galaxy/tool_util/biotools/interface.py' 2022-11-14T09:36:50,454 adding 'galaxy/tool_util/biotools/source.py' 2022-11-14T09:36:50,457 adding 'galaxy/tool_util/client/__init__.py' 2022-11-14T09:36:50,461 adding 'galaxy/tool_util/client/staging.py' 2022-11-14T09:36:50,465 adding 'galaxy/tool_util/cwl/__init__.py' 2022-11-14T09:36:50,468 adding 'galaxy/tool_util/cwl/cwltool_deps.py' 2022-11-14T09:36:50,482 adding 'galaxy/tool_util/cwl/parser.py' 2022-11-14T09:36:50,488 adding 'galaxy/tool_util/cwl/representation.py' 2022-11-14T09:36:50,491 adding 'galaxy/tool_util/cwl/runnable.py' 2022-11-14T09:36:50,495 adding 'galaxy/tool_util/cwl/runtime_actions.py' 2022-11-14T09:36:50,497 adding 'galaxy/tool_util/cwl/schema.py' 2022-11-14T09:36:50,504 adding 'galaxy/tool_util/cwl/util.py' 2022-11-14T09:36:50,511 adding 'galaxy/tool_util/deps/__init__.py' 2022-11-14T09:36:50,517 adding 'galaxy/tool_util/deps/brew_exts.py' 2022-11-14T09:36:50,520 adding 'galaxy/tool_util/deps/brew_util.py' 2022-11-14T09:36:50,522 adding 'galaxy/tool_util/deps/commands.py' 2022-11-14T09:36:50,525 adding 'galaxy/tool_util/deps/conda_compat.py' 2022-11-14T09:36:50,531 adding 'galaxy/tool_util/deps/conda_util.py' 2022-11-14T09:36:50,537 adding 'galaxy/tool_util/deps/container_classes.py' 2022-11-14T09:36:50,541 adding 'galaxy/tool_util/deps/containers.py' 2022-11-14T09:36:50,545 adding 'galaxy/tool_util/deps/dependencies.py' 2022-11-14T09:36:50,548 adding 'galaxy/tool_util/deps/docker_util.py' 2022-11-14T09:36:50,551 adding 'galaxy/tool_util/deps/dockerfiles.py' 2022-11-14T09:36:50,553 adding 'galaxy/tool_util/deps/installable.py' 2022-11-14T09:36:50,557 adding 'galaxy/tool_util/deps/requirements.py' 2022-11-14T09:36:50,559 adding 'galaxy/tool_util/deps/singularity_util.py' 2022-11-14T09:36:50,564 adding 'galaxy/tool_util/deps/views.py' 2022-11-14T09:36:50,568 adding 'galaxy/tool_util/deps/container_resolvers/__init__.py' 2022-11-14T09:36:50,571 adding 'galaxy/tool_util/deps/container_resolvers/explicit.py' 2022-11-14T09:36:50,578 adding 'galaxy/tool_util/deps/container_resolvers/mulled.py' 2022-11-14T09:36:50,582 adding 'galaxy/tool_util/deps/mulled/__init__.py' 2022-11-14T09:36:50,584 adding 'galaxy/tool_util/deps/mulled/_cli.py' 2022-11-14T09:36:50,588 adding 'galaxy/tool_util/deps/mulled/get_tests.py' 2022-11-14T09:36:50,591 adding 'galaxy/tool_util/deps/mulled/invfile.lua' 2022-11-14T09:36:50,597 adding 'galaxy/tool_util/deps/mulled/mulled_build.py' 2022-11-14T09:36:50,600 adding 'galaxy/tool_util/deps/mulled/mulled_build_channel.py' 2022-11-14T09:36:50,603 adding 'galaxy/tool_util/deps/mulled/mulled_build_files.py' 2022-11-14T09:36:50,606 adding 'galaxy/tool_util/deps/mulled/mulled_build_tool.py' 2022-11-14T09:36:50,608 adding 'galaxy/tool_util/deps/mulled/mulled_hash.py' 2022-11-14T09:36:50,611 adding 'galaxy/tool_util/deps/mulled/mulled_list.py' 2022-11-14T09:36:50,616 adding 'galaxy/tool_util/deps/mulled/mulled_search.py' 2022-11-14T09:36:50,619 adding 'galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py' 2022-11-14T09:36:50,624 adding 'galaxy/tool_util/deps/mulled/util.py' 2022-11-14T09:36:50,630 adding 'galaxy/tool_util/deps/resolvers/__init__.py' 2022-11-14T09:36:50,633 adding 'galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py' 2022-11-14T09:36:50,638 adding 'galaxy/tool_util/deps/resolvers/conda.py' 2022-11-14T09:36:50,641 adding 'galaxy/tool_util/deps/resolvers/default_conda_mapping.yml' 2022-11-14T09:36:50,644 adding 'galaxy/tool_util/deps/resolvers/galaxy_packages.py' 2022-11-14T09:36:50,646 adding 'galaxy/tool_util/deps/resolvers/homebrew.py' 2022-11-14T09:36:50,650 adding 'galaxy/tool_util/deps/resolvers/lmod.py' 2022-11-14T09:36:50,653 adding 'galaxy/tool_util/deps/resolvers/modules.py' 2022-11-14T09:36:50,656 adding 'galaxy/tool_util/deps/resolvers/resolver_mixins.py' 2022-11-14T09:36:50,658 adding 'galaxy/tool_util/deps/resolvers/tool_shed_packages.py' 2022-11-14T09:36:50,662 adding 'galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py' 2022-11-14T09:36:50,665 adding 'galaxy/tool_util/linters/__init__.py' 2022-11-14T09:36:50,667 adding 'galaxy/tool_util/linters/_util.py' 2022-11-14T09:36:50,670 adding 'galaxy/tool_util/linters/citations.py' 2022-11-14T09:36:50,672 adding 'galaxy/tool_util/linters/command.py' 2022-11-14T09:36:50,674 adding 'galaxy/tool_util/linters/cwl.py' 2022-11-14T09:36:50,677 adding 'galaxy/tool_util/linters/general.py' 2022-11-14T09:36:50,679 adding 'galaxy/tool_util/linters/help.py' 2022-11-14T09:36:50,684 adding 'galaxy/tool_util/linters/inputs.py' 2022-11-14T09:36:50,687 adding 'galaxy/tool_util/linters/outputs.py' 2022-11-14T09:36:50,690 adding 'galaxy/tool_util/linters/stdio.py' 2022-11-14T09:36:50,693 adding 'galaxy/tool_util/linters/tests.py' 2022-11-14T09:36:50,696 adding 'galaxy/tool_util/linters/xml_order.py' 2022-11-14T09:36:50,699 adding 'galaxy/tool_util/locations/__init__.py' 2022-11-14T09:36:50,701 adding 'galaxy/tool_util/locations/dockstore.py' 2022-11-14T09:36:50,704 adding 'galaxy/tool_util/locations/file.py' 2022-11-14T09:36:50,706 adding 'galaxy/tool_util/locations/http.py' 2022-11-14T09:36:50,709 adding 'galaxy/tool_util/parser/__init__.py' 2022-11-14T09:36:50,712 adding 'galaxy/tool_util/parser/cwl.py' 2022-11-14T09:36:50,715 adding 'galaxy/tool_util/parser/factory.py' 2022-11-14T09:36:50,720 adding 'galaxy/tool_util/parser/interface.py' 2022-11-14T09:36:50,726 adding 'galaxy/tool_util/parser/output_actions.py' 2022-11-14T09:36:50,729 adding 'galaxy/tool_util/parser/output_collection_def.py' 2022-11-14T09:36:50,734 adding 'galaxy/tool_util/parser/output_objects.py' 2022-11-14T09:36:50,736 adding 'galaxy/tool_util/parser/stdio.py' 2022-11-14T09:36:50,739 adding 'galaxy/tool_util/parser/util.py' 2022-11-14T09:36:50,752 adding 'galaxy/tool_util/parser/xml.py' 2022-11-14T09:36:50,757 adding 'galaxy/tool_util/parser/yaml.py' 2022-11-14T09:36:50,761 adding 'galaxy/tool_util/toolbox/__init__.py' 2022-11-14T09:36:50,779 adding 'galaxy/tool_util/toolbox/base.py' 2022-11-14T09:36:50,784 adding 'galaxy/tool_util/toolbox/integrated_panel.py' 2022-11-14T09:36:50,787 adding 'galaxy/tool_util/toolbox/panel.py' 2022-11-14T09:36:50,790 adding 'galaxy/tool_util/toolbox/parser.py' 2022-11-14T09:36:50,792 adding 'galaxy/tool_util/toolbox/tags.py' 2022-11-14T09:36:50,796 adding 'galaxy/tool_util/toolbox/watcher.py' 2022-11-14T09:36:50,799 adding 'galaxy/tool_util/toolbox/filters/__init__.py' 2022-11-14T09:36:50,802 adding 'galaxy/tool_util/toolbox/filters/examples.py.sample' 2022-11-14T09:36:50,805 adding 'galaxy/tool_util/toolbox/lineages/__init__.py' 2022-11-14T09:36:50,808 adding 'galaxy/tool_util/toolbox/lineages/factory.py' 2022-11-14T09:36:50,810 adding 'galaxy/tool_util/toolbox/lineages/interface.py' 2022-11-14T09:36:50,813 adding 'galaxy/tool_util/toolbox/views/__init__.py' 2022-11-14T09:36:50,816 adding 'galaxy/tool_util/toolbox/views/definitions.py' 2022-11-14T09:36:50,819 adding 'galaxy/tool_util/toolbox/views/edam.py' 2022-11-14T09:36:50,822 adding 'galaxy/tool_util/toolbox/views/interface.py' 2022-11-14T09:36:50,824 adding 'galaxy/tool_util/toolbox/views/sources.py' 2022-11-14T09:36:50,827 adding 'galaxy/tool_util/toolbox/views/static.py' 2022-11-14T09:36:50,831 adding 'galaxy/tool_util/unittest_utils/__init__.py' 2022-11-14T09:36:50,833 adding 'galaxy/tool_util/unittest_utils/sample_data.py' 2022-11-14T09:36:50,839 adding 'galaxy/tool_util/verify/__init__.py' 2022-11-14T09:36:50,857 adding 'galaxy/tool_util/verify/interactor.py' 2022-11-14T09:36:50,865 adding 'galaxy/tool_util/verify/script.py' 2022-11-14T09:36:50,867 adding 'galaxy/tool_util/verify/test_config.sample.yml' 2022-11-14T09:36:50,870 adding 'galaxy/tool_util/verify/test_data.py' 2022-11-14T09:36:50,872 adding 'galaxy/tool_util/verify/wait.py' 2022-11-14T09:36:50,876 adding 'galaxy/tool_util/verify/asserts/__init__.py' 2022-11-14T09:36:50,879 adding 'galaxy/tool_util/verify/asserts/_util.py' 2022-11-14T09:36:50,881 adding 'galaxy/tool_util/verify/asserts/archive.py' 2022-11-14T09:36:50,884 adding 'galaxy/tool_util/verify/asserts/hdf5.py' 2022-11-14T09:36:50,886 adding 'galaxy/tool_util/verify/asserts/size.py' 2022-11-14T09:36:50,888 adding 'galaxy/tool_util/verify/asserts/tabular.py' 2022-11-14T09:36:50,890 adding 'galaxy/tool_util/verify/asserts/text.py' 2022-11-14T09:36:50,893 adding 'galaxy/tool_util/verify/asserts/xml.py' 2022-11-14T09:36:50,897 adding 'galaxy/tool_util/xsd/LICENSE' 2022-11-14T09:36:50,899 adding 'galaxy/tool_util/xsd/README.md' 2022-11-14T09:36:50,901 adding 'galaxy/tool_util/xsd/galaxy.jxb' 2022-11-14T09:36:50,983 adding 'galaxy/tool_util/xsd/galaxy.xsd' 2022-11-14T09:36:50,997 adding 'galaxy_tool_util-22.1.5.dist-info/LICENSE' 2022-11-14T09:36:51,000 adding 'galaxy_tool_util-22.1.5.dist-info/METADATA' 2022-11-14T09:36:51,001 adding 'galaxy_tool_util-22.1.5.dist-info/WHEEL' 2022-11-14T09:36:51,003 adding 'galaxy_tool_util-22.1.5.dist-info/entry_points.txt' 2022-11-14T09:36:51,005 adding 'galaxy_tool_util-22.1.5.dist-info/top_level.txt' 2022-11-14T09:36:51,011 adding 'galaxy_tool_util-22.1.5.dist-info/RECORD' 2022-11-14T09:36:51,032 removing build/bdist.linux-armv7l/wheel 2022-11-14T09:36:51,368 Building wheel for galaxy-tool-util (setup.py): finished with status 'done' 2022-11-14T09:36:51,386 Created wheel for galaxy-tool-util: filename=galaxy_tool_util-22.1.5-py2.py3-none-any.whl size=344744 sha256=9894efec3fbc3f98e89685fb42a2fc7daa67cdce0e0e6dfb79905269e2ed3e45 2022-11-14T09:36:51,388 Stored in directory: /tmp/pip-ephem-wheel-cache-oslq6frz/wheels/f4/5b/62/7e4d3f33b9d6882d0b127619e653d0f625b9bcc9039ebdc8d4 2022-11-14T09:36:51,427 Successfully built galaxy-tool-util 2022-11-14T09:36:51,456 Removed build tracker: '/tmp/pip-build-tracker-7w3a_brz'