2022-11-15T11:19:46,951 Created temporary directory: /tmp/pip-ephem-wheel-cache-991okvor 2022-11-15T11:19:46,956 Created temporary directory: /tmp/pip-build-tracker-0cgt1xaq 2022-11-15T11:19:46,957 Initialized build tracking at /tmp/pip-build-tracker-0cgt1xaq 2022-11-15T11:19:46,957 Created build tracker: /tmp/pip-build-tracker-0cgt1xaq 2022-11-15T11:19:46,957 Entered build tracker: /tmp/pip-build-tracker-0cgt1xaq 2022-11-15T11:19:46,959 Created temporary directory: /tmp/pip-wheel-03splhlw 2022-11-15T11:19:46,966 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-15T11:19:46,971 Created temporary directory: /tmp/pip-ephem-wheel-cache-fln_oj8_ 2022-11-15T11:19:47,022 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-15T11:19:47,030 2 location(s) to search for versions of polyply: 2022-11-15T11:19:47,030 * https://pypi.org/simple/polyply/ 2022-11-15T11:19:47,030 * https://www.piwheels.org/simple/polyply/ 2022-11-15T11:19:47,031 Fetching project page and analyzing links: https://pypi.org/simple/polyply/ 2022-11-15T11:19:47,032 Getting page https://pypi.org/simple/polyply/ 2022-11-15T11:19:47,035 Found index url https://pypi.org/simple 2022-11-15T11:19:47,259 Fetched page https://pypi.org/simple/polyply/ as application/vnd.pypi.simple.v1+json 2022-11-15T11:19:47,268 Found link https://files.pythonhosted.org/packages/27/d1/df68703f3e73c235e05823b59a5271657847bcccdd392075b1b1da4aa701/polyply-0.0.1.tar.gz (from https://pypi.org/simple/polyply/), version: 0.0.1 2022-11-15T11:19:47,269 Found link https://files.pythonhosted.org/packages/3f/35/d6ad36f78a4d71aac92d47e2831c4b3b339c6801c6dac6c3334a73a164c2/polyply-1.0.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.0.0 2022-11-15T11:19:47,270 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/61/c4/9393a7f82554a6c494f4c09776d48e4b83650cb2065930bcf63f0a04b3f2/polyply-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2022-11-15T11:19:47,270 Found link https://files.pythonhosted.org/packages/07/50/e2bedb4e92e97d38a55c48bb46ccdb71c31980679e7c62a756daf8ac0556/polyply-1.1.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.1.0 2022-11-15T11:19:47,271 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/b6/73/dae457005e36caeed515e0ddd6575f97b7b7ef0fa10ea58080b214f28bcb/polyply-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2022-11-15T11:19:47,271 Found link https://files.pythonhosted.org/packages/18/8e/2f4345b5870703a292c4a6935f371b133bf4296fb0c27277fc2b0e82b84a/polyply-1.2.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.2.0 2022-11-15T11:19:47,272 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/30/09/9a2dd9e4a932367c34dab96daa3358f525caf79281b782cc999c5d23e739/polyply-1.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2022-11-15T11:19:47,273 Found link https://files.pythonhosted.org/packages/44/2e/5a1f0589f61f2adf682da196f365578969be49e70bb5c462b804378574b8/polyply-1.2.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.2.1 2022-11-15T11:19:47,273 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/8b/5a/54052dbde396df09dd9d81aeb3c5e1b3873d7a81e387f4c45cc3e9a9aaf7/polyply-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2022-11-15T11:19:47,274 Found link https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.3.0 2022-11-15T11:19:47,275 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/5b/42/27a59dec4af56f87c3f93920f6021fb31bb9885d2bc7b3e0f9efe883db01/polyply-1.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2022-11-15T11:19:47,275 Found link https://files.pythonhosted.org/packages/08/9b/e76f6659ecf63a5d1f11951ce10b248e4c13669aa8ca03fa9e766f21043b/polyply-1.3.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.3.1 2022-11-15T11:19:47,276 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/0f/cb/16b130082c96795791589934b925937530f9c909c544bf295069135003ca/polyply-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2022-11-15T11:19:47,276 Found link https://files.pythonhosted.org/packages/72/da/305294dabd9e3a6123018e8adabe7312ea474b0bbf45eb38c30ac96dcdd4/polyply-1.4.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.4.0 2022-11-15T11:19:47,277 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/f0/d9/5bf083840a5ca0f136f65a78f0cc725ef04c8c887c445d7814c97318b074/polyply-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2022-11-15T11:19:47,278 Found link https://files.pythonhosted.org/packages/ed/5f/c96ca2049310872af23fc84d0e686211d543915676f4f07fa6107956115f/polyply-1.4.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.4.1 2022-11-15T11:19:47,279 Fetching project page and analyzing links: https://www.piwheels.org/simple/polyply/ 2022-11-15T11:19:47,279 Getting page https://www.piwheels.org/simple/polyply/ 2022-11-15T11:19:47,281 Found index url https://www.piwheels.org/simple 2022-11-15T11:19:47,488 Fetched page https://www.piwheels.org/simple/polyply/ as text/html 2022-11-15T11:19:47,496 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.4.0-py2.py3-none-any.whl#sha256=ff46e65cc574f03b487c291c2f039559c7ae9915d832e65d1c2f5fa064c7c4f7 (from https://www.piwheels.org/simple/polyply/) 2022-11-15T11:19:47,496 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.1-py2.py3-none-any.whl#sha256=b0b3e19fb070225282deb01f6a7ecb6ee818e5ea427d82671643c3cdfe77d223 (from https://www.piwheels.org/simple/polyply/) 2022-11-15T11:19:47,497 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.0-py2.py3-none-any.whl#sha256=6ba24bf0e5816a4bbca620557f3da0c72223845d343dc2aef98b62c4d82dd3bb (from https://www.piwheels.org/simple/polyply/) 2022-11-15T11:19:47,497 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.1-py2.py3-none-any.whl#sha256=477478cf7f4d673782ed4e85fc97d32eaf0f5c1d5aa5af96d33ef496c1325007 (from https://www.piwheels.org/simple/polyply/) 2022-11-15T11:19:47,498 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.0-py2.py3-none-any.whl#sha256=672ceb8c03418bf79a0c31ab912adb5e0767df776a7d5d867a516ea0652e6362 (from https://www.piwheels.org/simple/polyply/) 2022-11-15T11:19:47,498 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://www.piwheels.org/simple/polyply/) 2022-11-15T11:19:47,499 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.0.0-py2.py3-none-any.whl#sha256=e44f0272c9e93e8e46bed997db28dd0205d709cebd40090747e2758358abdb8c (from https://www.piwheels.org/simple/polyply/) 2022-11-15T11:19:47,499 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-0.0.1-py2.py3-none-any.whl#sha256=165e22dfd4680f03fe8b6a49a8d3f38918049d263c57c0e82b5fddb4bc8b294b (from https://www.piwheels.org/simple/polyply/) 2022-11-15T11:19:47,500 Skipping link: not a file: https://www.piwheels.org/simple/polyply/ 2022-11-15T11:19:47,500 Skipping link: not a file: https://pypi.org/simple/polyply/ 2022-11-15T11:19:47,540 Given no hashes to check 1 links for project 'polyply': discarding no candidates 2022-11-15T11:19:47,570 Collecting polyply==1.4.1 2022-11-15T11:19:47,574 Created temporary directory: /tmp/pip-unpack-vwow07gl 2022-11-15T11:19:47,947 Downloading polyply-1.4.1.tar.gz (533 kB) 2022-11-15T11:19:49,415 Added polyply==1.4.1 from https://files.pythonhosted.org/packages/ed/5f/c96ca2049310872af23fc84d0e686211d543915676f4f07fa6107956115f/polyply-1.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-0cgt1xaq' 2022-11-15T11:19:49,425 Created temporary directory: /tmp/pip-build-env-d8dqlyau 2022-11-15T11:19:49,437 Installing build dependencies: started 2022-11-15T11:19:49,439 Running command pip subprocess to install build dependencies 2022-11-15T11:19:52,096 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-11-15T11:19:52,893 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-15T11:19:52,947 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-15T11:19:53,813 Collecting wheel 2022-11-15T11:19:53,850 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-11-15T11:19:57,480 Collecting setuptools>=30.3.0 2022-11-15T11:19:57,806 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.1-py3-none-any.whl (1.2 MB) 2022-11-15T11:19:58,433 Collecting pbr 2022-11-15T11:19:58,504 Using cached https://www.piwheels.org/simple/pbr/pbr-5.11.0-py2.py3-none-any.whl (112 kB) 2022-11-15T11:20:03,974 Installing collected packages: wheel, setuptools, pbr 2022-11-15T11:20:04,253 Creating /tmp/pip-build-env-d8dqlyau/overlay/bin 2022-11-15T11:20:04,257 changing mode of /tmp/pip-build-env-d8dqlyau/overlay/bin/wheel to 755 2022-11-15T11:20:09,735 changing mode of /tmp/pip-build-env-d8dqlyau/overlay/bin/pbr to 755 2022-11-15T11:20:09,769 Successfully installed pbr-5.11.0 setuptools-65.5.1 wheel-0.38.4 2022-11-15T11:20:09,800 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-11-15T11:20:09,801 [notice] To update, run: python3 -m pip install --upgrade pip 2022-11-15T11:20:10,245 Installing build dependencies: finished with status 'done' 2022-11-15T11:20:10,273 Getting requirements to build wheel: started 2022-11-15T11:20:10,275 Running command Getting requirements to build wheel 2022-11-15T11:20:12,633 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-11-15T11:20:12,635 % (opt, underscore_opt) 2022-11-15T11:20:12,635 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-11-15T11:20:12,635 % (opt, underscore_opt) 2022-11-15T11:20:12,636 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-11-15T11:20:12,636 % (opt, underscore_opt) 2022-11-15T11:20:12,637 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-11-15T11:20:12,637 % (opt, underscore_opt) 2022-11-15T11:20:12,825 Getting requirements to build wheel: finished with status 'done' 2022-11-15T11:20:12,852 Created temporary directory: /tmp/pip-modern-metadata-oa2x7_4n 2022-11-15T11:20:12,859 Preparing metadata (pyproject.toml): started 2022-11-15T11:20:12,861 Running command Preparing metadata (pyproject.toml) 2022-11-15T11:20:15,309 running dist_info 2022-11-15T11:20:15,317 creating /tmp/pip-modern-metadata-oa2x7_4n/polyply.egg-info 2022-11-15T11:20:15,381 writing /tmp/pip-modern-metadata-oa2x7_4n/polyply.egg-info/PKG-INFO 2022-11-15T11:20:15,388 writing dependency_links to /tmp/pip-modern-metadata-oa2x7_4n/polyply.egg-info/dependency_links.txt 2022-11-15T11:20:15,393 writing requirements to /tmp/pip-modern-metadata-oa2x7_4n/polyply.egg-info/requires.txt 2022-11-15T11:20:15,395 writing top-level names to /tmp/pip-modern-metadata-oa2x7_4n/polyply.egg-info/top_level.txt 2022-11-15T11:20:15,397 [pbr] Processing SOURCES.txt 2022-11-15T11:20:15,397 writing manifest file '/tmp/pip-modern-metadata-oa2x7_4n/polyply.egg-info/SOURCES.txt' 2022-11-15T11:20:15,644 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-11-15T11:20:15,644 EasyInstallDeprecationWarning, 2022-11-15T11:20:15,645 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-15T11:20:15,645 setuptools.SetuptoolsDeprecationWarning, 2022-11-15T11:20:15,645 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-11-15T11:20:15,646 % (opt, underscore_opt) 2022-11-15T11:20:15,646 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-11-15T11:20:15,646 % (opt, underscore_opt) 2022-11-15T11:20:15,647 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-11-15T11:20:15,647 % (opt, underscore_opt) 2022-11-15T11:20:15,647 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-11-15T11:20:15,647 % (opt, underscore_opt) 2022-11-15T11:20:15,648 warning: no previously-included files found matching '.gitignore' 2022-11-15T11:20:15,648 warning: no previously-included files found matching '.gitreview' 2022-11-15T11:20:15,649 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2022-11-15T11:20:15,768 adding license file 'LICENSE' 2022-11-15T11:20:15,769 adding license file 'AUTHORS' 2022-11-15T11:20:15,795 writing manifest file '/tmp/pip-modern-metadata-oa2x7_4n/polyply.egg-info/SOURCES.txt' 2022-11-15T11:20:15,798 creating '/tmp/pip-modern-metadata-oa2x7_4n/polyply-1.4.1.dist-info' 2022-11-15T11:20:15,909 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-11-15T11:20:16,235 Preparing metadata (pyproject.toml): finished with status 'done' 2022-11-15T11:20:16,251 Source in /tmp/pip-wheel-03splhlw/polyply_cfbd9a1b2b1942b4a7181fefd36e6eb9 has version 1.4.1, which satisfies requirement polyply==1.4.1 from https://files.pythonhosted.org/packages/ed/5f/c96ca2049310872af23fc84d0e686211d543915676f4f07fa6107956115f/polyply-1.4.1.tar.gz 2022-11-15T11:20:16,253 Removed polyply==1.4.1 from https://files.pythonhosted.org/packages/ed/5f/c96ca2049310872af23fc84d0e686211d543915676f4f07fa6107956115f/polyply-1.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-0cgt1xaq' 2022-11-15T11:20:16,263 Created temporary directory: /tmp/pip-unpack-inx2k3py 2022-11-15T11:20:16,265 Building wheels for collected packages: polyply 2022-11-15T11:20:16,274 Created temporary directory: /tmp/pip-wheel-0vsmxbc9 2022-11-15T11:20:16,275 Destination directory: /tmp/pip-wheel-0vsmxbc9 2022-11-15T11:20:16,279 Building wheel for polyply (pyproject.toml): started 2022-11-15T11:20:16,282 Running command Building wheel for polyply (pyproject.toml) 2022-11-15T11:20:18,535 running bdist_wheel 2022-11-15T11:20:18,558 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-11-15T11:20:18,558 EasyInstallDeprecationWarning, 2022-11-15T11:20:18,559 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-11-15T11:20:18,559 % (opt, underscore_opt) 2022-11-15T11:20:18,559 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-11-15T11:20:18,560 % (opt, underscore_opt) 2022-11-15T11:20:18,560 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-11-15T11:20:18,560 % (opt, underscore_opt) 2022-11-15T11:20:18,561 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-11-15T11:20:18,561 % (opt, underscore_opt) 2022-11-15T11:20:18,562 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-11-15T11:20:18,594 running build 2022-11-15T11:20:18,595 running build_py 2022-11-15T11:20:18,613 creating build 2022-11-15T11:20:18,613 creating build/lib 2022-11-15T11:20:18,615 creating build/lib/polyply 2022-11-15T11:20:18,616 creating build/lib/polyply/data 2022-11-15T11:20:18,618 copying polyply/data/__init__.py -> build/lib/polyply/data 2022-11-15T11:20:18,626 creating build/lib/polyply/tests 2022-11-15T11:20:18,627 copying polyply/tests/test_persistence.py -> build/lib/polyply/tests 2022-11-15T11:20:18,632 copying polyply/tests/test_backmap.py -> build/lib/polyply/tests 2022-11-15T11:20:18,635 copying polyply/tests/test_generate_templates.py -> build/lib/polyply/tests 2022-11-15T11:20:18,640 copying polyply/tests/test_gen_seq.py -> build/lib/polyply/tests 2022-11-15T11:20:18,644 copying polyply/tests/test_apply_links.py -> build/lib/polyply/tests 2022-11-15T11:20:18,650 copying polyply/tests/test_gen_params.py -> build/lib/polyply/tests 2022-11-15T11:20:18,654 copying polyply/tests/test_load_library.py -> build/lib/polyply/tests 2022-11-15T11:20:18,657 copying polyply/tests/test_linalg.py -> build/lib/polyply/tests 2022-11-15T11:20:18,661 copying polyply/tests/test_annotate_lingads.py -> build/lib/polyply/tests 2022-11-15T11:20:18,665 copying polyply/tests/test_random_walk.py -> build/lib/polyply/tests 2022-11-15T11:20:18,670 copying polyply/tests/test_build_system.py -> build/lib/polyply/tests 2022-11-15T11:20:18,674 copying polyply/tests/test_residue_check.py -> build/lib/polyply/tests 2022-11-15T11:20:18,678 copying polyply/tests/__init__.py -> build/lib/polyply/tests 2022-11-15T11:20:18,681 copying polyply/tests/test_top_parser.py -> build/lib/polyply/tests 2022-11-15T11:20:18,685 copying polyply/tests/test_simple_seq_parsers.py -> build/lib/polyply/tests 2022-11-15T11:20:18,689 copying polyply/tests/test_lib_files.py -> build/lib/polyply/tests 2022-11-15T11:20:18,694 copying polyply/tests/test_polyply_input.py -> build/lib/polyply/tests 2022-11-15T11:20:18,697 copying polyply/tests/example_fixtures.py -> build/lib/polyply/tests 2022-11-15T11:20:18,701 copying polyply/tests/test_itp_files.py -> build/lib/polyply/tests 2022-11-15T11:20:18,705 copying polyply/tests/test_logging.py -> build/lib/polyply/tests 2022-11-15T11:20:18,709 copying polyply/tests/test_graph_utils.py -> build/lib/polyply/tests 2022-11-15T11:20:18,712 copying polyply/tests/test_optimize_geometry.py -> build/lib/polyply/tests 2022-11-15T11:20:18,717 copying polyply/tests/test_restraints.py -> build/lib/polyply/tests 2022-11-15T11:20:18,720 copying polyply/tests/test_ff_parser.py -> build/lib/polyply/tests 2022-11-15T11:20:18,723 copying polyply/tests/test_nb_engine.py -> build/lib/polyply/tests 2022-11-15T11:20:18,728 copying polyply/tests/test_vs_builder.py -> build/lib/polyply/tests 2022-11-15T11:20:18,731 copying polyply/tests/test_gen_coords.py -> build/lib/polyply/tests 2022-11-15T11:20:18,735 copying polyply/tests/test_gen_coords_logic.py -> build/lib/polyply/tests 2022-11-15T11:20:18,738 copying polyply/tests/test_meta_molecule.py -> build/lib/polyply/tests 2022-11-15T11:20:18,743 copying polyply/tests/test_topology.py -> build/lib/polyply/tests 2022-11-15T11:20:18,748 copying polyply/tests/test_build_file_parser.py -> build/lib/polyply/tests 2022-11-15T11:20:18,753 copying polyply/tests/test_map_to_molecule.py -> build/lib/polyply/tests 2022-11-15T11:20:18,758 copying polyply/__init__.py -> build/lib/polyply 2022-11-15T11:20:18,765 creating build/lib/polyply/src 2022-11-15T11:20:18,767 copying polyply/src/apply_modifications.py -> build/lib/polyply/src 2022-11-15T11:20:18,771 copying polyply/src/polyply_parser.py -> build/lib/polyply/src 2022-11-15T11:20:18,775 copying polyply/src/generate_templates.py -> build/lib/polyply/src 2022-11-15T11:20:18,779 copying polyply/src/meta_molecule.py -> build/lib/polyply/src 2022-11-15T11:20:18,783 copying polyply/src/logging.py -> build/lib/polyply/src 2022-11-15T11:20:18,787 copying polyply/src/annotate_ligands.py -> build/lib/polyply/src 2022-11-15T11:20:18,791 copying polyply/src/topology.py -> build/lib/polyply/src 2022-11-15T11:20:18,796 copying polyply/src/processor.py -> build/lib/polyply/src 2022-11-15T11:20:18,799 copying polyply/src/build_system.py -> build/lib/polyply/src 2022-11-15T11:20:18,804 copying polyply/src/gen_seq.py -> build/lib/polyply/src 2022-11-15T11:20:18,808 copying polyply/src/top_parser.py -> build/lib/polyply/src 2022-11-15T11:20:18,813 copying polyply/src/__init__.py -> build/lib/polyply/src 2022-11-15T11:20:18,816 copying polyply/src/persistence.py -> build/lib/polyply/src 2022-11-15T11:20:18,820 copying polyply/src/check_residue_equivalence.py -> build/lib/polyply/src 2022-11-15T11:20:18,823 copying polyply/src/load_library.py -> build/lib/polyply/src 2022-11-15T11:20:18,827 copying polyply/src/virtual_site_builder.py -> build/lib/polyply/src 2022-11-15T11:20:18,832 copying polyply/src/nonbond_engine.py -> build/lib/polyply/src 2022-11-15T11:20:18,836 copying polyply/src/apply_links.py -> build/lib/polyply/src 2022-11-15T11:20:18,841 copying polyply/src/minimizer.py -> build/lib/polyply/src 2022-11-15T11:20:18,845 copying polyply/src/graph_utils.py -> build/lib/polyply/src 2022-11-15T11:20:18,849 copying polyply/src/random_walk.py -> build/lib/polyply/src 2022-11-15T11:20:18,853 copying polyply/src/map_to_molecule.py -> build/lib/polyply/src 2022-11-15T11:20:18,857 copying polyply/src/ff_parser_sub.py -> build/lib/polyply/src 2022-11-15T11:20:18,861 copying polyply/src/gen_coords.py -> build/lib/polyply/src 2022-11-15T11:20:18,866 copying polyply/src/simple_seq_parsers.py -> build/lib/polyply/src 2022-11-15T11:20:18,872 copying polyply/src/backmap.py -> build/lib/polyply/src 2022-11-15T11:20:18,877 copying polyply/src/gen_itp.py -> build/lib/polyply/src 2022-11-15T11:20:18,881 copying polyply/src/linalg_functions.py -> build/lib/polyply/src 2022-11-15T11:20:18,885 copying polyply/src/build_file_parser.py -> build/lib/polyply/src 2022-11-15T11:20:18,890 copying polyply/src/restraints.py -> build/lib/polyply/src 2022-11-15T11:20:18,896 running egg_info 2022-11-15T11:20:18,963 writing polyply.egg-info/PKG-INFO 2022-11-15T11:20:18,969 writing dependency_links to polyply.egg-info/dependency_links.txt 2022-11-15T11:20:18,974 writing requirements to polyply.egg-info/requires.txt 2022-11-15T11:20:18,976 writing top-level names to polyply.egg-info/top_level.txt 2022-11-15T11:20:18,978 [pbr] Reusing existing SOURCES.txt 2022-11-15T11:20:19,063 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.gromos53A6' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,063 !! 2022-11-15T11:20:19,064 ############################ 2022-11-15T11:20:19,065 # Package would be ignored # 2022-11-15T11:20:19,065 ############################ 2022-11-15T11:20:19,065 Python recognizes 'polyply.data.gromos53A6' as an importable package, 2022-11-15T11:20:19,066 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,066 'polyply.data.gromos53A6' has been automatically added to the distribution only 2022-11-15T11:20:19,066 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,067 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,067 Please make sure that 'polyply.data.gromos53A6' is included as a package by using 2022-11-15T11:20:19,068 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,068 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,068 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,069 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,069 documentation page. 2022-11-15T11:20:19,070 !! 2022-11-15T11:20:19,071 check.warn(importable) 2022-11-15T11:20:19,071 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.martini2' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,071 !! 2022-11-15T11:20:19,072 ############################ 2022-11-15T11:20:19,072 # Package would be ignored # 2022-11-15T11:20:19,073 ############################ 2022-11-15T11:20:19,073 Python recognizes 'polyply.data.martini2' as an importable package, 2022-11-15T11:20:19,073 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,074 'polyply.data.martini2' has been automatically added to the distribution only 2022-11-15T11:20:19,074 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,074 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,075 Please make sure that 'polyply.data.martini2' is included as a package by using 2022-11-15T11:20:19,075 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,076 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,076 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,076 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,077 documentation page. 2022-11-15T11:20:19,078 !! 2022-11-15T11:20:19,078 check.warn(importable) 2022-11-15T11:20:19,079 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.martini3' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,079 !! 2022-11-15T11:20:19,080 ############################ 2022-11-15T11:20:19,080 # Package would be ignored # 2022-11-15T11:20:19,080 ############################ 2022-11-15T11:20:19,081 Python recognizes 'polyply.data.martini3' as an importable package, 2022-11-15T11:20:19,081 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,081 'polyply.data.martini3' has been automatically added to the distribution only 2022-11-15T11:20:19,082 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,082 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,083 Please make sure that 'polyply.data.martini3' is included as a package by using 2022-11-15T11:20:19,083 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,083 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,084 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,084 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,084 documentation page. 2022-11-15T11:20:19,085 !! 2022-11-15T11:20:19,086 check.warn(importable) 2022-11-15T11:20:19,086 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.martini3_beta' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,086 !! 2022-11-15T11:20:19,087 ############################ 2022-11-15T11:20:19,088 # Package would be ignored # 2022-11-15T11:20:19,088 ############################ 2022-11-15T11:20:19,088 Python recognizes 'polyply.data.martini3_beta' as an importable package, 2022-11-15T11:20:19,089 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,089 'polyply.data.martini3_beta' has been automatically added to the distribution only 2022-11-15T11:20:19,089 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,090 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,090 Please make sure that 'polyply.data.martini3_beta' is included as a package by using 2022-11-15T11:20:19,091 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,091 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,091 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,092 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,092 documentation page. 2022-11-15T11:20:19,093 !! 2022-11-15T11:20:19,093 check.warn(importable) 2022-11-15T11:20:19,094 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.oplsaaLigParGen' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,094 !! 2022-11-15T11:20:19,095 ############################ 2022-11-15T11:20:19,095 # Package would be ignored # 2022-11-15T11:20:19,095 ############################ 2022-11-15T11:20:19,096 Python recognizes 'polyply.data.oplsaaLigParGen' as an importable package, 2022-11-15T11:20:19,096 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,097 'polyply.data.oplsaaLigParGen' has been automatically added to the distribution only 2022-11-15T11:20:19,097 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,097 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,098 Please make sure that 'polyply.data.oplsaaLigParGen' is included as a package by using 2022-11-15T11:20:19,098 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,098 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,099 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,099 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,100 documentation page. 2022-11-15T11:20:19,100 !! 2022-11-15T11:20:19,101 check.warn(importable) 2022-11-15T11:20:19,101 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.parmbsc1' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,102 !! 2022-11-15T11:20:19,102 ############################ 2022-11-15T11:20:19,103 # Package would be ignored # 2022-11-15T11:20:19,103 ############################ 2022-11-15T11:20:19,103 Python recognizes 'polyply.data.parmbsc1' as an importable package, 2022-11-15T11:20:19,104 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,104 'polyply.data.parmbsc1' has been automatically added to the distribution only 2022-11-15T11:20:19,104 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,105 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,105 Please make sure that 'polyply.data.parmbsc1' is included as a package by using 2022-11-15T11:20:19,106 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,106 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,106 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,107 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,107 documentation page. 2022-11-15T11:20:19,108 !! 2022-11-15T11:20:19,108 check.warn(importable) 2022-11-15T11:20:19,109 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.ff' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,109 !! 2022-11-15T11:20:19,110 ############################ 2022-11-15T11:20:19,110 # Package would be ignored # 2022-11-15T11:20:19,110 ############################ 2022-11-15T11:20:19,111 Python recognizes 'polyply.tests.test_data.ff' as an importable package, 2022-11-15T11:20:19,111 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,112 'polyply.tests.test_data.ff' has been automatically added to the distribution only 2022-11-15T11:20:19,112 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,112 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,113 Please make sure that 'polyply.tests.test_data.ff' is included as a package by using 2022-11-15T11:20:19,113 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,114 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,114 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,114 documentation page. 2022-11-15T11:20:19,115 !! 2022-11-15T11:20:19,116 check.warn(importable) 2022-11-15T11:20:19,116 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_params.input' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,117 !! 2022-11-15T11:20:19,117 ############################ 2022-11-15T11:20:19,118 # Package would be ignored # 2022-11-15T11:20:19,118 ############################ 2022-11-15T11:20:19,118 Python recognizes 'polyply.tests.test_data.gen_params.input' as an importable package, 2022-11-15T11:20:19,119 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,119 'polyply.tests.test_data.gen_params.input' has been automatically added to the distribution only 2022-11-15T11:20:19,119 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,120 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,120 Please make sure that 'polyply.tests.test_data.gen_params.input' is included as a package by using 2022-11-15T11:20:19,121 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,121 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,121 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,122 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,122 documentation page. 2022-11-15T11:20:19,123 !! 2022-11-15T11:20:19,123 check.warn(importable) 2022-11-15T11:20:19,124 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_params.output' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,124 !! 2022-11-15T11:20:19,125 ############################ 2022-11-15T11:20:19,125 # Package would be ignored # 2022-11-15T11:20:19,125 ############################ 2022-11-15T11:20:19,126 Python recognizes 'polyply.tests.test_data.gen_params.output' as an importable package, 2022-11-15T11:20:19,126 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,126 'polyply.tests.test_data.gen_params.output' has been automatically added to the distribution only 2022-11-15T11:20:19,127 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,127 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,128 Please make sure that 'polyply.tests.test_data.gen_params.output' is included as a package by using 2022-11-15T11:20:19,128 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,129 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,129 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,129 documentation page. 2022-11-15T11:20:19,130 !! 2022-11-15T11:20:19,131 check.warn(importable) 2022-11-15T11:20:19,131 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_params.ref' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,131 !! 2022-11-15T11:20:19,132 ############################ 2022-11-15T11:20:19,133 # Package would be ignored # 2022-11-15T11:20:19,133 ############################ 2022-11-15T11:20:19,133 Python recognizes 'polyply.tests.test_data.gen_params.ref' as an importable package, 2022-11-15T11:20:19,133 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,134 'polyply.tests.test_data.gen_params.ref' has been automatically added to the distribution only 2022-11-15T11:20:19,134 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,134 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,135 Please make sure that 'polyply.tests.test_data.gen_params.ref' is included as a package by using 2022-11-15T11:20:19,135 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,136 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,136 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,137 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,137 documentation page. 2022-11-15T11:20:19,138 !! 2022-11-15T11:20:19,138 check.warn(importable) 2022-11-15T11:20:19,139 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_seq.input' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,139 !! 2022-11-15T11:20:19,140 ############################ 2022-11-15T11:20:19,140 # Package would be ignored # 2022-11-15T11:20:19,140 ############################ 2022-11-15T11:20:19,141 Python recognizes 'polyply.tests.test_data.gen_seq.input' as an importable package, 2022-11-15T11:20:19,141 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,141 'polyply.tests.test_data.gen_seq.input' has been automatically added to the distribution only 2022-11-15T11:20:19,142 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,142 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,142 Please make sure that 'polyply.tests.test_data.gen_seq.input' is included as a package by using 2022-11-15T11:20:19,143 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,143 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,143 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,144 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,144 documentation page. 2022-11-15T11:20:19,145 !! 2022-11-15T11:20:19,146 check.warn(importable) 2022-11-15T11:20:19,146 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_seq.output' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,146 !! 2022-11-15T11:20:19,147 ############################ 2022-11-15T11:20:19,147 # Package would be ignored # 2022-11-15T11:20:19,148 ############################ 2022-11-15T11:20:19,148 Python recognizes 'polyply.tests.test_data.gen_seq.output' as an importable package, 2022-11-15T11:20:19,148 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,149 'polyply.tests.test_data.gen_seq.output' has been automatically added to the distribution only 2022-11-15T11:20:19,149 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,149 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,150 Please make sure that 'polyply.tests.test_data.gen_seq.output' is included as a package by using 2022-11-15T11:20:19,150 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,150 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,151 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,151 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,152 documentation page. 2022-11-15T11:20:19,152 !! 2022-11-15T11:20:19,153 check.warn(importable) 2022-11-15T11:20:19,153 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_seq.ref' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,154 !! 2022-11-15T11:20:19,154 ############################ 2022-11-15T11:20:19,155 # Package would be ignored # 2022-11-15T11:20:19,155 ############################ 2022-11-15T11:20:19,155 Python recognizes 'polyply.tests.test_data.gen_seq.ref' as an importable package, 2022-11-15T11:20:19,156 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,156 'polyply.tests.test_data.gen_seq.ref' has been automatically added to the distribution only 2022-11-15T11:20:19,156 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,157 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,157 Please make sure that 'polyply.tests.test_data.gen_seq.ref' is included as a package by using 2022-11-15T11:20:19,157 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,158 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,158 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,159 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,159 documentation page. 2022-11-15T11:20:19,160 !! 2022-11-15T11:20:19,160 check.warn(importable) 2022-11-15T11:20:19,161 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.itp' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,161 !! 2022-11-15T11:20:19,162 ############################ 2022-11-15T11:20:19,162 # Package would be ignored # 2022-11-15T11:20:19,162 ############################ 2022-11-15T11:20:19,163 Python recognizes 'polyply.tests.test_data.itp' as an importable package, 2022-11-15T11:20:19,163 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,163 'polyply.tests.test_data.itp' has been automatically added to the distribution only 2022-11-15T11:20:19,164 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,164 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,165 Please make sure that 'polyply.tests.test_data.itp' is included as a package by using 2022-11-15T11:20:19,165 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,165 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,165 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,166 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,166 documentation page. 2022-11-15T11:20:19,167 !! 2022-11-15T11:20:19,168 check.warn(importable) 2022-11-15T11:20:19,168 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.json' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,168 !! 2022-11-15T11:20:19,169 ############################ 2022-11-15T11:20:19,169 # Package would be ignored # 2022-11-15T11:20:19,170 ############################ 2022-11-15T11:20:19,170 Python recognizes 'polyply.tests.test_data.json' as an importable package, 2022-11-15T11:20:19,170 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,171 'polyply.tests.test_data.json' has been automatically added to the distribution only 2022-11-15T11:20:19,171 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,171 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,172 Please make sure that 'polyply.tests.test_data.json' is included as a package by using 2022-11-15T11:20:19,172 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,173 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,173 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,173 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,174 documentation page. 2022-11-15T11:20:19,175 !! 2022-11-15T11:20:19,175 check.warn(importable) 2022-11-15T11:20:19,175 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,176 !! 2022-11-15T11:20:19,176 ############################ 2022-11-15T11:20:19,177 # Package would be ignored # 2022-11-15T11:20:19,177 ############################ 2022-11-15T11:20:19,177 Python recognizes 'polyply.tests.test_data.library_tests' as an importable package, 2022-11-15T11:20:19,178 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,178 'polyply.tests.test_data.library_tests' has been automatically added to the distribution only 2022-11-15T11:20:19,179 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,179 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,179 Please make sure that 'polyply.tests.test_data.library_tests' is included as a package by using 2022-11-15T11:20:19,180 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,180 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,180 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,181 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,181 documentation page. 2022-11-15T11:20:19,182 !! 2022-11-15T11:20:19,182 check.warn(importable) 2022-11-15T11:20:19,183 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,183 !! 2022-11-15T11:20:19,184 ############################ 2022-11-15T11:20:19,184 # Package would be ignored # 2022-11-15T11:20:19,184 ############################ 2022-11-15T11:20:19,185 Python recognizes 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' as an importable package, 2022-11-15T11:20:19,185 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,186 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,186 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,186 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,187 Please make sure that 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' is included as a package by using 2022-11-15T11:20:19,187 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,187 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,188 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,188 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,188 documentation page. 2022-11-15T11:20:19,189 !! 2022-11-15T11:20:19,190 check.warn(importable) 2022-11-15T11:20:19,190 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEL' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,190 !! 2022-11-15T11:20:19,191 ############################ 2022-11-15T11:20:19,192 # Package would be ignored # 2022-11-15T11:20:19,192 ############################ 2022-11-15T11:20:19,192 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL' as an importable package, 2022-11-15T11:20:19,192 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,193 'polyply.tests.test_data.library_tests.martini2.PEL' has been automatically added to the distribution only 2022-11-15T11:20:19,193 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,194 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,194 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL' is included as a package by using 2022-11-15T11:20:19,194 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,195 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,195 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,196 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,196 documentation page. 2022-11-15T11:20:19,197 !! 2022-11-15T11:20:19,197 check.warn(importable) 2022-11-15T11:20:19,198 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,198 !! 2022-11-15T11:20:19,199 ############################ 2022-11-15T11:20:19,199 # Package would be ignored # 2022-11-15T11:20:19,199 ############################ 2022-11-15T11:20:19,200 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' as an importable package, 2022-11-15T11:20:19,200 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,200 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,201 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,201 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,201 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' is included as a package by using 2022-11-15T11:20:19,202 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,202 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,202 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,203 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,203 documentation page. 2022-11-15T11:20:19,204 !! 2022-11-15T11:20:19,205 check.warn(importable) 2022-11-15T11:20:19,205 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,205 !! 2022-11-15T11:20:19,206 ############################ 2022-11-15T11:20:19,206 # Package would be ignored # 2022-11-15T11:20:19,207 ############################ 2022-11-15T11:20:19,207 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' as an importable package, 2022-11-15T11:20:19,207 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,208 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,208 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,208 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,209 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' is included as a package by using 2022-11-15T11:20:19,209 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,209 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,210 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,210 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,211 documentation page. 2022-11-15T11:20:19,211 !! 2022-11-15T11:20:19,212 check.warn(importable) 2022-11-15T11:20:19,212 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEO_PE' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,213 !! 2022-11-15T11:20:19,213 ############################ 2022-11-15T11:20:19,214 # Package would be ignored # 2022-11-15T11:20:19,214 ############################ 2022-11-15T11:20:19,214 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE' as an importable package, 2022-11-15T11:20:19,214 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,215 'polyply.tests.test_data.library_tests.martini2.PEO_PE' has been automatically added to the distribution only 2022-11-15T11:20:19,215 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,216 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,216 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE' is included as a package by using 2022-11-15T11:20:19,217 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,217 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,217 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,218 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,218 documentation page. 2022-11-15T11:20:19,219 !! 2022-11-15T11:20:19,219 check.warn(importable) 2022-11-15T11:20:19,220 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,220 !! 2022-11-15T11:20:19,221 ############################ 2022-11-15T11:20:19,221 # Package would be ignored # 2022-11-15T11:20:19,221 ############################ 2022-11-15T11:20:19,222 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' as an importable package, 2022-11-15T11:20:19,222 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,222 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,223 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,223 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,224 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' is included as a package by using 2022-11-15T11:20:19,224 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,224 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,224 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,225 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,225 documentation page. 2022-11-15T11:20:19,226 !! 2022-11-15T11:20:19,227 check.warn(importable) 2022-11-15T11:20:19,227 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PS.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,227 !! 2022-11-15T11:20:19,228 ############################ 2022-11-15T11:20:19,228 # Package would be ignored # 2022-11-15T11:20:19,229 ############################ 2022-11-15T11:20:19,229 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PS.polyply' as an importable package, 2022-11-15T11:20:19,229 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,230 'polyply.tests.test_data.library_tests.martini2.PS.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,230 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,230 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,231 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PS.polyply' is included as a package by using 2022-11-15T11:20:19,231 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,231 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,232 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,232 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,233 documentation page. 2022-11-15T11:20:19,233 !! 2022-11-15T11:20:19,234 check.warn(importable) 2022-11-15T11:20:19,234 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.ssDNA' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,234 !! 2022-11-15T11:20:19,235 ############################ 2022-11-15T11:20:19,236 # Package would be ignored # 2022-11-15T11:20:19,236 ############################ 2022-11-15T11:20:19,236 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA' as an importable package, 2022-11-15T11:20:19,236 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,237 'polyply.tests.test_data.library_tests.martini2.ssDNA' has been automatically added to the distribution only 2022-11-15T11:20:19,237 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,238 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,238 Please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA' is included as a package by using 2022-11-15T11:20:19,238 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,239 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,239 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,239 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,240 documentation page. 2022-11-15T11:20:19,241 !! 2022-11-15T11:20:19,241 check.warn(importable) 2022-11-15T11:20:19,241 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,242 !! 2022-11-15T11:20:19,243 ############################ 2022-11-15T11:20:19,243 # Package would be ignored # 2022-11-15T11:20:19,243 ############################ 2022-11-15T11:20:19,243 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' as an importable package, 2022-11-15T11:20:19,244 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,244 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,245 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,245 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,245 Please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' is included as a package by using 2022-11-15T11:20:19,246 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,246 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,247 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,247 documentation page. 2022-11-15T11:20:19,248 !! 2022-11-15T11:20:19,249 check.warn(importable) 2022-11-15T11:20:19,249 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,249 !! 2022-11-15T11:20:19,250 ############################ 2022-11-15T11:20:19,250 # Package would be ignored # 2022-11-15T11:20:19,251 ############################ 2022-11-15T11:20:19,251 Python recognizes 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' as an importable package, 2022-11-15T11:20:19,251 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,252 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,252 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,252 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,253 Please make sure that 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' is included as a package by using 2022-11-15T11:20:19,253 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,253 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,254 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,254 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,254 documentation page. 2022-11-15T11:20:19,255 !! 2022-11-15T11:20:19,256 check.warn(importable) 2022-11-15T11:20:19,256 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,256 !! 2022-11-15T11:20:19,257 ############################ 2022-11-15T11:20:19,257 # Package would be ignored # 2022-11-15T11:20:19,258 ############################ 2022-11-15T11:20:19,258 Python recognizes 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' as an importable package, 2022-11-15T11:20:19,258 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,259 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,259 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,260 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,260 Please make sure that 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' is included as a package by using 2022-11-15T11:20:19,260 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,261 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,262 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,263 documentation page. 2022-11-15T11:20:19,264 !! 2022-11-15T11:20:19,265 check.warn(importable) 2022-11-15T11:20:19,266 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,267 !! 2022-11-15T11:20:19,268 ############################ 2022-11-15T11:20:19,269 # Package would be ignored # 2022-11-15T11:20:19,269 ############################ 2022-11-15T11:20:19,269 Python recognizes 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' as an importable package, 2022-11-15T11:20:19,270 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,271 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,271 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,272 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,273 Please make sure that 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' is included as a package by using 2022-11-15T11:20:19,273 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,273 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,274 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,275 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,275 documentation page. 2022-11-15T11:20:19,277 !! 2022-11-15T11:20:19,278 check.warn(importable) 2022-11-15T11:20:19,279 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PE.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,279 !! 2022-11-15T11:20:19,280 ############################ 2022-11-15T11:20:19,281 # Package would be ignored # 2022-11-15T11:20:19,281 ############################ 2022-11-15T11:20:19,282 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PE.polyply' as an importable package, 2022-11-15T11:20:19,282 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,283 'polyply.tests.test_data.library_tests.martini3.PE.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,283 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,284 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,285 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PE.polyply' is included as a package by using 2022-11-15T11:20:19,286 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,286 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,287 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,289 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,290 documentation page. 2022-11-15T11:20:19,291 !! 2022-11-15T11:20:19,292 check.warn(importable) 2022-11-15T11:20:19,292 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,294 !! 2022-11-15T11:20:19,295 ############################ 2022-11-15T11:20:19,295 # Package would be ignored # 2022-11-15T11:20:19,296 ############################ 2022-11-15T11:20:19,296 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' as an importable package, 2022-11-15T11:20:19,297 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,298 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,298 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,299 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,300 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' is included as a package by using 2022-11-15T11:20:19,300 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,300 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,301 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,302 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,302 documentation page. 2022-11-15T11:20:19,304 !! 2022-11-15T11:20:19,305 check.warn(importable) 2022-11-15T11:20:19,305 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,306 !! 2022-11-15T11:20:19,307 ############################ 2022-11-15T11:20:19,308 # Package would be ignored # 2022-11-15T11:20:19,308 ############################ 2022-11-15T11:20:19,309 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' as an importable package, 2022-11-15T11:20:19,309 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,310 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,311 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,311 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,312 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' is included as a package by using 2022-11-15T11:20:19,313 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,314 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,315 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,316 documentation page. 2022-11-15T11:20:19,318 !! 2022-11-15T11:20:19,319 check.warn(importable) 2022-11-15T11:20:19,319 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PROT' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,319 !! 2022-11-15T11:20:19,321 ############################ 2022-11-15T11:20:19,321 # Package would be ignored # 2022-11-15T11:20:19,322 ############################ 2022-11-15T11:20:19,322 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT' as an importable package, 2022-11-15T11:20:19,323 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,323 'polyply.tests.test_data.library_tests.martini3.PROT' has been automatically added to the distribution only 2022-11-15T11:20:19,325 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,326 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,326 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT' is included as a package by using 2022-11-15T11:20:19,327 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,327 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,328 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,329 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,330 documentation page. 2022-11-15T11:20:19,331 !! 2022-11-15T11:20:19,332 check.warn(importable) 2022-11-15T11:20:19,333 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,333 !! 2022-11-15T11:20:19,335 ############################ 2022-11-15T11:20:19,335 # Package would be ignored # 2022-11-15T11:20:19,335 ############################ 2022-11-15T11:20:19,336 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' as an importable package, 2022-11-15T11:20:19,336 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,338 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,338 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,339 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,340 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' is included as a package by using 2022-11-15T11:20:19,340 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,341 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,342 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,342 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,343 documentation page. 2022-11-15T11:20:19,344 !! 2022-11-15T11:20:19,346 check.warn(importable) 2022-11-15T11:20:19,346 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PS.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,347 !! 2022-11-15T11:20:19,348 ############################ 2022-11-15T11:20:19,348 # Package would be ignored # 2022-11-15T11:20:19,349 ############################ 2022-11-15T11:20:19,350 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PS.polyply' as an importable package, 2022-11-15T11:20:19,350 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,351 'polyply.tests.test_data.library_tests.martini3.PS.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,352 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,352 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,354 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PS.polyply' is included as a package by using 2022-11-15T11:20:19,354 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,355 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,355 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,356 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,357 documentation page. 2022-11-15T11:20:19,359 !! 2022-11-15T11:20:19,359 check.warn(importable) 2022-11-15T11:20:19,360 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,360 !! 2022-11-15T11:20:19,362 ############################ 2022-11-15T11:20:19,363 # Package would be ignored # 2022-11-15T11:20:19,363 ############################ 2022-11-15T11:20:19,364 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' as an importable package, 2022-11-15T11:20:19,364 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,365 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,365 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,366 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,367 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' is included as a package by using 2022-11-15T11:20:19,368 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,368 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,369 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,370 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,370 documentation page. 2022-11-15T11:20:19,372 !! 2022-11-15T11:20:19,373 check.warn(importable) 2022-11-15T11:20:19,373 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:19,374 !! 2022-11-15T11:20:19,375 ############################ 2022-11-15T11:20:19,376 # Package would be ignored # 2022-11-15T11:20:19,377 ############################ 2022-11-15T11:20:19,377 Python recognizes 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' as an importable package, 2022-11-15T11:20:19,377 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:19,379 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' has been automatically added to the distribution only 2022-11-15T11:20:19,379 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:19,380 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:19,381 Please make sure that 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' is included as a package by using 2022-11-15T11:20:19,381 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:19,382 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:19,382 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:19,383 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:19,384 documentation page. 2022-11-15T11:20:19,385 !! 2022-11-15T11:20:19,386 check.warn(importable) 2022-11-15T11:20:19,386 creating build/lib/polyply/data/2016H66 2022-11-15T11:20:19,387 copying polyply/data/2016H66/chiral_links.ff -> build/lib/polyply/data/2016H66 2022-11-15T11:20:19,387 copying polyply/data/2016H66/citation.bib -> build/lib/polyply/data/2016H66 2022-11-15T11:20:19,388 copying polyply/data/2016H66/polyether_blocks.ff -> build/lib/polyply/data/2016H66 2022-11-15T11:20:19,388 copying polyply/data/2016H66/polyether_links.ff -> build/lib/polyply/data/2016H66 2022-11-15T11:20:19,389 copying polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2022-11-15T11:20:19,389 copying polyply/data/2016H66/polyvinyl_blocks.ff -> build/lib/polyply/data/2016H66 2022-11-15T11:20:19,390 copying polyply/data/2016H66/polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2022-11-15T11:20:19,390 copying polyply/data/2016H66/terminal_blocks.ff -> build/lib/polyply/data/2016H66 2022-11-15T11:20:19,391 creating build/lib/polyply/data/gromos53A6 2022-11-15T11:20:19,392 copying polyply/data/gromos53A6/Hter.ff -> build/lib/polyply/data/gromos53A6 2022-11-15T11:20:19,392 copying polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/lib/polyply/data/gromos53A6 2022-11-15T11:20:19,393 copying polyply/data/gromos53A6/citations.bib -> build/lib/polyply/data/gromos53A6 2022-11-15T11:20:19,393 copying polyply/data/gromos53A6/links.ff -> build/lib/polyply/data/gromos53A6 2022-11-15T11:20:19,393 creating build/lib/polyply/data/martini2 2022-11-15T11:20:19,394 copying polyply/data/martini2/DNA_M2.ff -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,394 copying polyply/data/martini2/P3HT.martini.2.itp -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,395 copying polyply/data/martini2/PDADMA.martini.2.itp -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,395 copying polyply/data/martini2/PE.martini.2.itp -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,396 copying polyply/data/martini2/PEO.martini.2.itp -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,396 copying polyply/data/martini2/PP.martini.2.itp -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,397 copying polyply/data/martini2/PS.martini.2.itp -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,397 copying polyply/data/martini2/PSS.martini.2.itp -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,398 copying polyply/data/martini2/citations.bib -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,398 copying polyply/data/martini2/links.ff -> build/lib/polyply/data/martini2 2022-11-15T11:20:19,399 creating build/lib/polyply/data/martini3 2022-11-15T11:20:19,399 copying polyply/data/martini3/P3HT.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,400 copying polyply/data/martini3/PE.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,400 copying polyply/data/martini3/PEL_link.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,400 copying polyply/data/martini3/PEO.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,401 copying polyply/data/martini3/PMA.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,401 copying polyply/data/martini3/PMMA.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,402 copying polyply/data/martini3/PPE.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,402 copying polyply/data/martini3/PS.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,403 copying polyply/data/martini3/PSS.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,403 copying polyply/data/martini3/PS_PEO_link.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,405 copying polyply/data/martini3/PTMA.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,409 copying polyply/data/martini3/PVA.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,413 copying polyply/data/martini3/aminoacids.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,419 copying polyply/data/martini3/cellulose.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,423 copying polyply/data/martini3/citations.bib -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,428 copying polyply/data/martini3/dextran.martini3.ff -> build/lib/polyply/data/martini3 2022-11-15T11:20:19,432 creating build/lib/polyply/data/martini3_beta 2022-11-15T11:20:19,434 copying polyply/data/martini3_beta/PEO.martini.3.itp -> build/lib/polyply/data/martini3_beta 2022-11-15T11:20:19,439 copying polyply/data/martini3_beta/citations.bib -> build/lib/polyply/data/martini3_beta 2022-11-15T11:20:19,442 creating build/lib/polyply/data/oplsaaLigParGen 2022-11-15T11:20:19,443 copying polyply/data/oplsaaLigParGen/OHter.ff -> build/lib/polyply/data/oplsaaLigParGen 2022-11-15T11:20:19,447 copying polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/lib/polyply/data/oplsaaLigParGen 2022-11-15T11:20:19,451 copying polyply/data/oplsaaLigParGen/citations.bib -> build/lib/polyply/data/oplsaaLigParGen 2022-11-15T11:20:19,454 copying polyply/data/oplsaaLigParGen/links.ff -> build/lib/polyply/data/oplsaaLigParGen 2022-11-15T11:20:19,458 creating build/lib/polyply/data/parmbsc1 2022-11-15T11:20:19,460 copying polyply/data/parmbsc1/citations.bib -> build/lib/polyply/data/parmbsc1 2022-11-15T11:20:19,463 copying polyply/data/parmbsc1/dna_final.ff -> build/lib/polyply/data/parmbsc1 2022-11-15T11:20:19,471 creating build/lib/polyply/tests/test_data 2022-11-15T11:20:19,472 creating build/lib/polyply/tests/test_data/ff 2022-11-15T11:20:19,474 copying polyply/tests/test_data/ff/aminoacids.ff -> build/lib/polyply/tests/test_data/ff 2022-11-15T11:20:19,481 creating build/lib/polyply/tests/test_data/gen_params 2022-11-15T11:20:19,482 creating build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,484 copying polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,489 copying polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,493 copying polyply/tests/test_data/gen_params/input/PPI.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,497 copying polyply/tests/test_data/gen_params/input/PPI.json -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,501 copying polyply/tests/test_data/gen_params/input/PS.json -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,505 copying polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,510 copying polyply/tests/test_data/gen_params/input/removal.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,514 copying polyply/tests/test_data/gen_params/input/test.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,518 copying polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,523 copying polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/lib/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:19,527 creating build/lib/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:19,529 copying polyply/tests/test_data/gen_params/output/P3HT_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:19,534 copying polyply/tests/test_data/gen_params/output/PEO_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:19,538 copying polyply/tests/test_data/gen_params/output/PPI_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:19,543 copying polyply/tests/test_data/gen_params/output/PS_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:19,548 copying polyply/tests/test_data/gen_params/output/removal.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:19,552 copying polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:19,557 copying polyply/tests/test_data/gen_params/output/test_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:19,561 creating build/lib/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:19,563 copying polyply/tests/test_data/gen_params/ref/G3.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:19,567 copying polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:19,573 copying polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:19,577 copying polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:19,582 copying polyply/tests/test_data/gen_params/ref/end.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:19,587 copying polyply/tests/test_data/gen_params/ref/removal.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:19,591 copying polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:19,595 copying polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:19,599 creating build/lib/polyply/tests/test_data/gen_seq 2022-11-15T11:20:19,600 creating build/lib/polyply/tests/test_data/gen_seq/input 2022-11-15T11:20:19,603 copying polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/lib/polyply/tests/test_data/gen_seq/input 2022-11-15T11:20:19,610 creating build/lib/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:19,612 copying polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:19,616 copying polyply/tests/test_data/gen_seq/output/PPI.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:19,621 copying polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:19,630 copying polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:19,639 copying polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:19,643 creating build/lib/polyply/tests/test_data/gen_seq/ref 2022-11-15T11:20:19,644 copying polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2022-11-15T11:20:19,648 copying polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2022-11-15T11:20:19,652 copying polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2022-11-15T11:20:19,659 creating build/lib/polyply/tests/test_data/itp 2022-11-15T11:20:19,660 copying polyply/tests/test_data/itp/PEO.itp -> build/lib/polyply/tests/test_data/itp 2022-11-15T11:20:19,664 creating build/lib/polyply/tests/test_data/json 2022-11-15T11:20:19,665 copying polyply/tests/test_data/json/double_branch.json -> build/lib/polyply/tests/test_data/json 2022-11-15T11:20:19,669 copying polyply/tests/test_data/json/fail.json -> build/lib/polyply/tests/test_data/json 2022-11-15T11:20:19,673 copying polyply/tests/test_data/json/hyperbranched.json -> build/lib/polyply/tests/test_data/json 2022-11-15T11:20:19,676 copying polyply/tests/test_data/json/linear.json -> build/lib/polyply/tests/test_data/json 2022-11-15T11:20:19,680 copying polyply/tests/test_data/json/linear_rev.json -> build/lib/polyply/tests/test_data/json 2022-11-15T11:20:19,683 copying polyply/tests/test_data/json/single_branch.json -> build/lib/polyply/tests/test_data/json 2022-11-15T11:20:19,687 creating build/lib/polyply/tests/test_data/library_tests 2022-11-15T11:20:19,688 creating build/lib/polyply/tests/test_data/library_tests/2016H66 2022-11-15T11:20:19,689 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4 2022-11-15T11:20:19,690 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-11-15T11:20:19,692 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-11-15T11:20:19,697 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-11-15T11:20:19,700 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2022-11-15T11:20:19,702 copying polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2022-11-15T11:20:19,705 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-11-15T11:20:19,707 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-11-15T11:20:19,711 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-11-15T11:20:19,715 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2022-11-15T11:20:19,716 copying polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2022-11-15T11:20:19,720 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-11-15T11:20:19,721 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-11-15T11:20:19,726 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-11-15T11:20:19,730 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2022-11-15T11:20:19,731 copying polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2022-11-15T11:20:19,735 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-11-15T11:20:19,737 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-11-15T11:20:19,741 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-11-15T11:20:19,744 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2022-11-15T11:20:19,746 copying polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2022-11-15T11:20:19,750 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-11-15T11:20:19,751 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-11-15T11:20:19,756 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-11-15T11:20:19,760 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2022-11-15T11:20:19,762 copying polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2022-11-15T11:20:19,767 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-11-15T11:20:19,769 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-11-15T11:20:19,774 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-11-15T11:20:19,778 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6 2022-11-15T11:20:19,779 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2022-11-15T11:20:19,781 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-11-15T11:20:19,783 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-11-15T11:20:19,790 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-11-15T11:20:19,794 creating build/lib/polyply/tests/test_data/library_tests/martini2 2022-11-15T11:20:19,795 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2022-11-15T11:20:19,798 copying polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2022-11-15T11:20:19,802 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-11-15T11:20:19,805 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-11-15T11:20:19,811 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-11-15T11:20:19,815 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO 2022-11-15T11:20:19,816 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-11-15T11:20:19,819 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-11-15T11:20:19,824 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-11-15T11:20:19,828 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-11-15T11:20:19,830 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-11-15T11:20:19,835 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-11-15T11:20:19,837 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-11-15T11:20:19,841 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-11-15T11:20:19,845 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS 2022-11-15T11:20:19,847 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-11-15T11:20:19,849 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-11-15T11:20:19,854 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-11-15T11:20:19,858 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-11-15T11:20:19,860 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-11-15T11:20:19,874 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-11-15T11:20:19,879 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-11-15T11:20:19,880 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-11-15T11:20:19,884 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-11-15T11:20:19,912 creating build/lib/polyply/tests/test_data/library_tests/martini3 2022-11-15T11:20:19,913 creating build/lib/polyply/tests/test_data/library_tests/martini3/CEL 2022-11-15T11:20:19,913 creating build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2022-11-15T11:20:19,915 copying polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2022-11-15T11:20:19,922 copying polyply/tests/test_data/library_tests/martini3/CEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2022-11-15T11:20:19,926 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX 2022-11-15T11:20:19,927 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-11-15T11:20:19,929 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-11-15T11:20:19,933 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-11-15T11:20:19,937 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT 2022-11-15T11:20:19,938 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-11-15T11:20:19,940 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-11-15T11:20:19,945 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-11-15T11:20:19,949 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE 2022-11-15T11:20:19,950 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-11-15T11:20:19,952 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-11-15T11:20:19,957 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-11-15T11:20:19,961 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO 2022-11-15T11:20:19,961 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-11-15T11:20:19,963 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-11-15T11:20:19,967 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-11-15T11:20:19,971 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE 2022-11-15T11:20:19,971 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-11-15T11:20:19,973 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-11-15T11:20:19,978 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-11-15T11:20:19,982 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2022-11-15T11:20:19,983 copying polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2022-11-15T11:20:19,989 copying polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2022-11-15T11:20:19,994 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-11-15T11:20:19,995 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-11-15T11:20:20,001 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-11-15T11:20:20,005 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS 2022-11-15T11:20:20,006 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-11-15T11:20:20,007 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-11-15T11:20:20,011 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-11-15T11:20:20,015 creating build/lib/polyply/tests/test_data/library_tests/martini3/PTMA 2022-11-15T11:20:20,016 creating build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2022-11-15T11:20:20,017 copying polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2022-11-15T11:20:20,023 copying polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2022-11-15T11:20:20,026 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen 2022-11-15T11:20:20,027 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2022-11-15T11:20:20,028 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-11-15T11:20:20,030 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-11-15T11:20:20,036 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-11-15T11:20:20,040 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1 2022-11-15T11:20:20,040 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-11-15T11:20:20,042 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-11-15T11:20:20,052 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-11-15T11:20:20,055 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-11-15T11:20:20,057 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-11-15T11:20:20,076 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-11-15T11:20:20,080 creating build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,081 copying polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,085 copying polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,089 copying polyply/tests/test_data/polyply/PE.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,092 copying polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,096 copying polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,100 copying polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,103 copying polyply/tests/test_data/polyply/PP.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,107 copying polyply/tests/test_data/polyply/PS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,112 copying polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-11-15T11:20:20,116 creating build/lib/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:20,118 copying polyply/tests/test_data/simple_seq_files/test.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:20,123 copying polyply/tests/test_data/simple_seq_files/test.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:20,127 copying polyply/tests/test_data/simple_seq_files/test.txt -> build/lib/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:20,131 copying polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:20,135 copying polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:20,138 copying polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:20,142 copying polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:20,146 creating build/lib/polyply/tests/test_data/struc_build 2022-11-15T11:20:20,147 copying polyply/tests/test_data/struc_build/PEO.itp -> build/lib/polyply/tests/test_data/struc_build 2022-11-15T11:20:20,151 copying polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/lib/polyply/tests/test_data/struc_build 2022-11-15T11:20:20,159 copying polyply/tests/test_data/struc_build/system.top -> build/lib/polyply/tests/test_data/struc_build 2022-11-15T11:20:20,163 creating build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,164 copying polyply/tests/test_data/topology_test/W.itp -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,168 copying polyply/tests/test_data/topology_test/cog.gro -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,171 copying polyply/tests/test_data/topology_test/cog_missing.gro -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,175 copying polyply/tests/test_data/topology_test/complete.gro -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,179 copying polyply/tests/test_data/topology_test/fail.gro -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,182 copying polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,207 copying polyply/tests/test_data/topology_test/meta.gro -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,211 copying polyply/tests/test_data/topology_test/molecule_0.itp -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,221 copying polyply/tests/test_data/topology_test/pdb.top -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,225 copying polyply/tests/test_data/topology_test/system.top -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,228 copying polyply/tests/test_data/topology_test/test.gro -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,232 copying polyply/tests/test_data/topology_test/test.itp -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,236 copying polyply/tests/test_data/topology_test/test.pdb -> build/lib/polyply/tests/test_data/topology_test 2022-11-15T11:20:20,407 running build_scripts 2022-11-15T11:20:20,408 creating build/scripts-3.7 2022-11-15T11:20:20,409 copying and adjusting bin/polyply -> build/scripts-3.7 2022-11-15T11:20:20,414 changing mode of build/scripts-3.7/polyply from 644 to 755 2022-11-15T11:20:20,416 installing to build/bdist.linux-armv7l/wheel 2022-11-15T11:20:20,416 running install 2022-11-15T11:20:20,533 [pbr] Generating AUTHORS 2022-11-15T11:20:20,559 [pbr] AUTHORS complete (0.0s) 2022-11-15T11:20:20,560 running install_lib 2022-11-15T11:20:20,582 creating build/bdist.linux-armv7l 2022-11-15T11:20:20,582 creating build/bdist.linux-armv7l/wheel 2022-11-15T11:20:20,585 creating build/bdist.linux-armv7l/wheel/polyply 2022-11-15T11:20:20,589 creating build/bdist.linux-armv7l/wheel/polyply/data 2022-11-15T11:20:20,591 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2022-11-15T11:20:20,593 copying build/lib/polyply/data/martini3_beta/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2022-11-15T11:20:20,597 copying build/lib/polyply/data/martini3_beta/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2022-11-15T11:20:20,601 copying build/lib/polyply/data/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/data 2022-11-15T11:20:20,605 creating build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-11-15T11:20:20,607 copying build/lib/polyply/data/oplsaaLigParGen/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-11-15T11:20:20,612 copying build/lib/polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-11-15T11:20:20,615 copying build/lib/polyply/data/oplsaaLigParGen/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-11-15T11:20:20,619 copying build/lib/polyply/data/oplsaaLigParGen/OHter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-11-15T11:20:20,623 creating build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-11-15T11:20:20,624 copying build/lib/polyply/data/2016H66/polyether_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-11-15T11:20:20,628 copying build/lib/polyply/data/2016H66/polyvinyl_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-11-15T11:20:20,632 copying build/lib/polyply/data/2016H66/citation.bib -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-11-15T11:20:20,635 copying build/lib/polyply/data/2016H66/chiral_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-11-15T11:20:20,638 copying build/lib/polyply/data/2016H66/terminal_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-11-15T11:20:20,641 copying build/lib/polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-11-15T11:20:20,645 copying build/lib/polyply/data/2016H66/polyether_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-11-15T11:20:20,649 copying build/lib/polyply/data/2016H66/polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-11-15T11:20:20,654 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,655 copying build/lib/polyply/data/martini3/PTMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,659 copying build/lib/polyply/data/martini3/PS_PEO_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,662 copying build/lib/polyply/data/martini3/PS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,665 copying build/lib/polyply/data/martini3/PMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,668 copying build/lib/polyply/data/martini3/PSS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,671 copying build/lib/polyply/data/martini3/dextran.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,675 copying build/lib/polyply/data/martini3/PE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,678 copying build/lib/polyply/data/martini3/cellulose.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,681 copying build/lib/polyply/data/martini3/PPE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,685 copying build/lib/polyply/data/martini3/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,689 copying build/lib/polyply/data/martini3/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,692 copying build/lib/polyply/data/martini3/PVA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,696 copying build/lib/polyply/data/martini3/PEO.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,699 copying build/lib/polyply/data/martini3/P3HT.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,702 copying build/lib/polyply/data/martini3/PMMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,705 copying build/lib/polyply/data/martini3/PEL_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-11-15T11:20:20,709 creating build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,711 copying build/lib/polyply/data/martini2/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,714 copying build/lib/polyply/data/martini2/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,717 copying build/lib/polyply/data/martini2/DNA_M2.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,721 copying build/lib/polyply/data/martini2/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,724 copying build/lib/polyply/data/martini2/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,727 copying build/lib/polyply/data/martini2/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,731 copying build/lib/polyply/data/martini2/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,734 copying build/lib/polyply/data/martini2/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,737 copying build/lib/polyply/data/martini2/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,740 copying build/lib/polyply/data/martini2/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-11-15T11:20:20,744 creating build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2022-11-15T11:20:20,746 copying build/lib/polyply/data/parmbsc1/dna_final.ff -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2022-11-15T11:20:20,754 copying build/lib/polyply/data/parmbsc1/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2022-11-15T11:20:20,758 creating build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-11-15T11:20:20,760 copying build/lib/polyply/data/gromos53A6/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-11-15T11:20:20,763 copying build/lib/polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-11-15T11:20:20,767 copying build/lib/polyply/data/gromos53A6/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-11-15T11:20:20,770 copying build/lib/polyply/data/gromos53A6/Hter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-11-15T11:20:20,773 copying build/lib/polyply/__init__.py -> build/bdist.linux-armv7l/wheel/polyply 2022-11-15T11:20:20,778 creating build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,780 copying build/lib/polyply/src/apply_modifications.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,783 copying build/lib/polyply/src/polyply_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,787 copying build/lib/polyply/src/generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,792 copying build/lib/polyply/src/meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,796 copying build/lib/polyply/src/logging.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,799 copying build/lib/polyply/src/annotate_ligands.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,803 copying build/lib/polyply/src/topology.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,808 copying build/lib/polyply/src/processor.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,812 copying build/lib/polyply/src/build_system.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,816 copying build/lib/polyply/src/gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,820 copying build/lib/polyply/src/top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,825 copying build/lib/polyply/src/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,828 copying build/lib/polyply/src/persistence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,832 copying build/lib/polyply/src/check_residue_equivalence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,835 copying build/lib/polyply/src/load_library.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,838 copying build/lib/polyply/src/virtual_site_builder.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,842 copying build/lib/polyply/src/nonbond_engine.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,846 copying build/lib/polyply/src/apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,850 copying build/lib/polyply/src/minimizer.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,854 copying build/lib/polyply/src/graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,858 copying build/lib/polyply/src/random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,862 copying build/lib/polyply/src/map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,866 copying build/lib/polyply/src/ff_parser_sub.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,869 copying build/lib/polyply/src/gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,873 copying build/lib/polyply/src/simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,877 copying build/lib/polyply/src/backmap.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,881 copying build/lib/polyply/src/gen_itp.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,884 copying build/lib/polyply/src/linalg_functions.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,888 copying build/lib/polyply/src/build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,892 copying build/lib/polyply/src/restraints.py -> build/bdist.linux-armv7l/wheel/polyply/src 2022-11-15T11:20:20,898 creating build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,900 copying build/lib/polyply/tests/test_persistence.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,904 copying build/lib/polyply/tests/test_backmap.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,907 copying build/lib/polyply/tests/test_generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,911 copying build/lib/polyply/tests/test_gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,915 copying build/lib/polyply/tests/test_apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,938 copying build/lib/polyply/tests/test_gen_params.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,942 copying build/lib/polyply/tests/test_load_library.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,945 copying build/lib/polyply/tests/test_linalg.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,957 copying build/lib/polyply/tests/test_annotate_lingads.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,961 copying build/lib/polyply/tests/test_random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,966 copying build/lib/polyply/tests/test_build_system.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,970 copying build/lib/polyply/tests/test_residue_check.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,973 copying build/lib/polyply/tests/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,977 copying build/lib/polyply/tests/test_top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,981 copying build/lib/polyply/tests/test_simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,985 copying build/lib/polyply/tests/test_lib_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,989 copying build/lib/polyply/tests/test_polyply_input.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,993 copying build/lib/polyply/tests/example_fixtures.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:20,997 copying build/lib/polyply/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,003 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data 2022-11-15T11:20:21,005 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:21,007 copying build/lib/polyply/tests/test_data/simple_seq_files/test.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:21,011 copying build/lib/polyply/tests/test_data/simple_seq_files/test.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:21,015 copying build/lib/polyply/tests/test_data/simple_seq_files/test.txt -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:21,018 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:21,022 copying build/lib/polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:21,025 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:21,029 copying build/lib/polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-11-15T11:20:21,033 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2022-11-15T11:20:21,034 copying build/lib/polyply/tests/test_data/struc_build/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2022-11-15T11:20:21,038 copying build/lib/polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2022-11-15T11:20:21,045 copying build/lib/polyply/tests/test_data/struc_build/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2022-11-15T11:20:21,050 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq 2022-11-15T11:20:21,052 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2022-11-15T11:20:21,054 copying build/lib/polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2022-11-15T11:20:21,062 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2022-11-15T11:20:21,064 copying build/lib/polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2022-11-15T11:20:21,068 copying build/lib/polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2022-11-15T11:20:21,073 copying build/lib/polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2022-11-15T11:20:21,081 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:21,084 copying build/lib/polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:21,094 copying build/lib/polyply/tests/test_data/gen_seq/output/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:21,099 copying build/lib/polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:21,109 copying build/lib/polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:21,113 copying build/lib/polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-11-15T11:20:21,119 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests 2022-11-15T11:20:21,122 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen 2022-11-15T11:20:21,126 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2022-11-15T11:20:21,129 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-11-15T11:20:21,132 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-11-15T11:20:21,136 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-11-15T11:20:21,143 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66 2022-11-15T11:20:21,146 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2022-11-15T11:20:21,148 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2022-11-15T11:20:21,154 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-11-15T11:20:21,156 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-11-15T11:20:21,161 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-11-15T11:20:21,166 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4 2022-11-15T11:20:21,169 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-11-15T11:20:21,171 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-11-15T11:20:21,177 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-11-15T11:20:21,181 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2022-11-15T11:20:21,183 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2022-11-15T11:20:21,188 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-11-15T11:20:21,189 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-11-15T11:20:21,193 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-11-15T11:20:21,199 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2022-11-15T11:20:21,201 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-11-15T11:20:21,203 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-11-15T11:20:21,206 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-11-15T11:20:21,210 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2022-11-15T11:20:21,215 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2022-11-15T11:20:21,217 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-11-15T11:20:21,219 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-11-15T11:20:21,223 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-11-15T11:20:21,227 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2022-11-15T11:20:21,232 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2022-11-15T11:20:21,235 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-11-15T11:20:21,236 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-11-15T11:20:21,241 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-11-15T11:20:21,244 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2022-11-15T11:20:21,249 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3 2022-11-15T11:20:21,252 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2022-11-15T11:20:21,254 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2022-11-15T11:20:21,259 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2022-11-15T11:20:21,266 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-11-15T11:20:21,267 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-11-15T11:20:21,273 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-11-15T11:20:21,278 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA 2022-11-15T11:20:21,280 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2022-11-15T11:20:21,282 copying build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2022-11-15T11:20:21,287 copying build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2022-11-15T11:20:21,292 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE 2022-11-15T11:20:21,294 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-11-15T11:20:21,296 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-11-15T11:20:21,301 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2022-11-15T11:20:21,305 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS 2022-11-15T11:20:21,308 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-11-15T11:20:21,309 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-11-15T11:20:21,313 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-11-15T11:20:21,318 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX 2022-11-15T11:20:21,321 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-11-15T11:20:21,323 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-11-15T11:20:21,326 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-11-15T11:20:21,332 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT 2022-11-15T11:20:21,334 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-11-15T11:20:21,336 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-11-15T11:20:21,340 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-11-15T11:20:21,345 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO 2022-11-15T11:20:21,347 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-11-15T11:20:21,349 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-11-15T11:20:21,353 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-11-15T11:20:21,358 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE 2022-11-15T11:20:21,360 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-11-15T11:20:21,362 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-11-15T11:20:21,366 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-11-15T11:20:21,370 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL 2022-11-15T11:20:21,373 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2022-11-15T11:20:21,375 copying build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2022-11-15T11:20:21,381 copying build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2022-11-15T11:20:21,386 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2 2022-11-15T11:20:21,389 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-11-15T11:20:21,390 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-11-15T11:20:21,396 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-11-15T11:20:21,398 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-11-15T11:20:21,402 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-11-15T11:20:21,424 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-11-15T11:20:21,439 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS 2022-11-15T11:20:21,442 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-11-15T11:20:21,445 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-11-15T11:20:21,449 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-11-15T11:20:21,454 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO 2022-11-15T11:20:21,457 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-11-15T11:20:21,459 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-11-15T11:20:21,463 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-11-15T11:20:21,469 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2022-11-15T11:20:21,471 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2022-11-15T11:20:21,476 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-11-15T11:20:21,478 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-11-15T11:20:21,484 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-11-15T11:20:21,489 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-11-15T11:20:21,492 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-11-15T11:20:21,494 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-11-15T11:20:21,498 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-11-15T11:20:21,502 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-11-15T11:20:21,507 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1 2022-11-15T11:20:21,510 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-11-15T11:20:21,512 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-11-15T11:20:21,517 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-11-15T11:20:21,520 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-11-15T11:20:21,535 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-11-15T11:20:21,539 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-11-15T11:20:21,550 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6 2022-11-15T11:20:21,553 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2022-11-15T11:20:21,556 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-11-15T11:20:21,559 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-11-15T11:20:21,565 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-11-15T11:20:21,570 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,572 copying build/lib/polyply/tests/test_data/polyply/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,576 copying build/lib/polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,580 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,584 copying build/lib/polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,588 copying build/lib/polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,592 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,596 copying build/lib/polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,600 copying build/lib/polyply/tests/test_data/polyply/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,604 copying build/lib/polyply/tests/test_data/polyply/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-11-15T11:20:21,609 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2022-11-15T11:20:21,611 copying build/lib/polyply/tests/test_data/ff/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2022-11-15T11:20:21,618 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,620 copying build/lib/polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,645 copying build/lib/polyply/tests/test_data/topology_test/test.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,649 copying build/lib/polyply/tests/test_data/topology_test/test.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,652 copying build/lib/polyply/tests/test_data/topology_test/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,656 copying build/lib/polyply/tests/test_data/topology_test/test.pdb -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,663 copying build/lib/polyply/tests/test_data/topology_test/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,674 copying build/lib/polyply/tests/test_data/topology_test/complete.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,677 copying build/lib/polyply/tests/test_data/topology_test/cog.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,680 copying build/lib/polyply/tests/test_data/topology_test/fail.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,683 copying build/lib/polyply/tests/test_data/topology_test/meta.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,686 copying build/lib/polyply/tests/test_data/topology_test/cog_missing.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,690 copying build/lib/polyply/tests/test_data/topology_test/W.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,693 copying build/lib/polyply/tests/test_data/topology_test/pdb.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-11-15T11:20:21,697 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params 2022-11-15T11:20:21,699 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,701 copying build/lib/polyply/tests/test_data/gen_params/input/test.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,704 copying build/lib/polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,708 copying build/lib/polyply/tests/test_data/gen_params/input/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,711 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,714 copying build/lib/polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,717 copying build/lib/polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,721 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,724 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,727 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,730 copying build/lib/polyply/tests/test_data/gen_params/input/removal.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-11-15T11:20:21,735 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:21,736 copying build/lib/polyply/tests/test_data/gen_params/ref/end.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:21,740 copying build/lib/polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:21,743 copying build/lib/polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:21,746 copying build/lib/polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:21,750 copying build/lib/polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:21,753 copying build/lib/polyply/tests/test_data/gen_params/ref/G3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:21,757 copying build/lib/polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:21,760 copying build/lib/polyply/tests/test_data/gen_params/ref/removal.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-11-15T11:20:21,765 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:21,766 copying build/lib/polyply/tests/test_data/gen_params/output/test_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:21,770 copying build/lib/polyply/tests/test_data/gen_params/output/PPI_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:21,773 copying build/lib/polyply/tests/test_data/gen_params/output/PS_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:21,777 copying build/lib/polyply/tests/test_data/gen_params/output/PEO_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:21,780 copying build/lib/polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:21,783 copying build/lib/polyply/tests/test_data/gen_params/output/P3HT_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:21,787 copying build/lib/polyply/tests/test_data/gen_params/output/removal.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-11-15T11:20:21,791 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2022-11-15T11:20:21,792 copying build/lib/polyply/tests/test_data/itp/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2022-11-15T11:20:21,797 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-11-15T11:20:21,798 copying build/lib/polyply/tests/test_data/json/linear.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-11-15T11:20:21,801 copying build/lib/polyply/tests/test_data/json/double_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-11-15T11:20:21,805 copying build/lib/polyply/tests/test_data/json/single_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-11-15T11:20:21,808 copying build/lib/polyply/tests/test_data/json/linear_rev.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-11-15T11:20:21,811 copying build/lib/polyply/tests/test_data/json/hyperbranched.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-11-15T11:20:21,814 copying build/lib/polyply/tests/test_data/json/fail.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-11-15T11:20:21,817 copying build/lib/polyply/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,821 copying build/lib/polyply/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,824 copying build/lib/polyply/tests/test_optimize_geometry.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,828 copying build/lib/polyply/tests/test_restraints.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,831 copying build/lib/polyply/tests/test_ff_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,834 copying build/lib/polyply/tests/test_nb_engine.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,838 copying build/lib/polyply/tests/test_vs_builder.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,841 copying build/lib/polyply/tests/test_gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,845 copying build/lib/polyply/tests/test_gen_coords_logic.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,848 copying build/lib/polyply/tests/test_meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,852 copying build/lib/polyply/tests/test_topology.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,857 copying build/lib/polyply/tests/test_build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,861 copying build/lib/polyply/tests/test_map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2022-11-15T11:20:21,865 running install_egg_info 2022-11-15T11:20:21,879 Copying polyply.egg-info to build/bdist.linux-armv7l/wheel/polyply-1.4.1-py3.7.egg-info 2022-11-15T11:20:21,906 running install_scripts 2022-11-15T11:20:21,908 creating build/bdist.linux-armv7l/wheel/polyply-1.4.1.data 2022-11-15T11:20:21,909 creating build/bdist.linux-armv7l/wheel/polyply-1.4.1.data/scripts 2022-11-15T11:20:21,911 copying build/scripts-3.7/polyply -> build/bdist.linux-armv7l/wheel/polyply-1.4.1.data/scripts 2022-11-15T11:20:21,915 changing mode of build/bdist.linux-armv7l/wheel/polyply-1.4.1.data/scripts/polyply to 755 2022-11-15T11:20:21,977 creating build/bdist.linux-armv7l/wheel/polyply-1.4.1.dist-info/WHEEL 2022-11-15T11:20:21,982 creating '/tmp/pip-wheel-0vsmxbc9/tmps53021we/polyply-1.4.1-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-15T11:20:21,987 adding 'polyply/__init__.py' 2022-11-15T11:20:21,991 adding 'polyply/data/__init__.py' 2022-11-15T11:20:21,995 adding 'polyply/data/2016H66/chiral_links.ff' 2022-11-15T11:20:21,998 adding 'polyply/data/2016H66/citation.bib' 2022-11-15T11:20:22,000 adding 'polyply/data/2016H66/polyether_blocks.ff' 2022-11-15T11:20:22,003 adding 'polyply/data/2016H66/polyether_links.ff' 2022-11-15T11:20:22,006 adding 'polyply/data/2016H66/polyether_polyvinyl_links.ff' 2022-11-15T11:20:22,010 adding 'polyply/data/2016H66/polyvinyl_blocks.ff' 2022-11-15T11:20:22,013 adding 'polyply/data/2016H66/polyvinyl_links.ff' 2022-11-15T11:20:22,015 adding 'polyply/data/2016H66/terminal_blocks.ff' 2022-11-15T11:20:22,019 adding 'polyply/data/gromos53A6/Hter.ff' 2022-11-15T11:20:22,023 adding 'polyply/data/gromos53A6/P3HT.gromos.53A6.ff' 2022-11-15T11:20:22,025 adding 'polyply/data/gromos53A6/citations.bib' 2022-11-15T11:20:22,028 adding 'polyply/data/gromos53A6/links.ff' 2022-11-15T11:20:22,033 adding 'polyply/data/martini2/DNA_M2.ff' 2022-11-15T11:20:22,036 adding 'polyply/data/martini2/P3HT.martini.2.itp' 2022-11-15T11:20:22,039 adding 'polyply/data/martini2/PDADMA.martini.2.itp' 2022-11-15T11:20:22,042 adding 'polyply/data/martini2/PE.martini.2.itp' 2022-11-15T11:20:22,044 adding 'polyply/data/martini2/PEO.martini.2.itp' 2022-11-15T11:20:22,046 adding 'polyply/data/martini2/PP.martini.2.itp' 2022-11-15T11:20:22,049 adding 'polyply/data/martini2/PS.martini.2.itp' 2022-11-15T11:20:22,052 adding 'polyply/data/martini2/PSS.martini.2.itp' 2022-11-15T11:20:22,055 adding 'polyply/data/martini2/citations.bib' 2022-11-15T11:20:22,057 adding 'polyply/data/martini2/links.ff' 2022-11-15T11:20:22,062 adding 'polyply/data/martini3/P3HT.martini3.ff' 2022-11-15T11:20:22,064 adding 'polyply/data/martini3/PE.martini3.ff' 2022-11-15T11:20:22,067 adding 'polyply/data/martini3/PEL_link.ff' 2022-11-15T11:20:22,069 adding 'polyply/data/martini3/PEO.martini3.ff' 2022-11-15T11:20:22,072 adding 'polyply/data/martini3/PMA.martini3.ff' 2022-11-15T11:20:22,074 adding 'polyply/data/martini3/PMMA.martini3.ff' 2022-11-15T11:20:22,077 adding 'polyply/data/martini3/PPE.martini3.ff' 2022-11-15T11:20:22,080 adding 'polyply/data/martini3/PS.martini3.ff' 2022-11-15T11:20:22,083 adding 'polyply/data/martini3/PSS.martini3.ff' 2022-11-15T11:20:22,085 adding 'polyply/data/martini3/PS_PEO_link.ff' 2022-11-15T11:20:22,088 adding 'polyply/data/martini3/PTMA.martini3.ff' 2022-11-15T11:20:22,090 adding 'polyply/data/martini3/PVA.martini3.ff' 2022-11-15T11:20:22,095 adding 'polyply/data/martini3/aminoacids.ff' 2022-11-15T11:20:22,098 adding 'polyply/data/martini3/cellulose.martini3.ff' 2022-11-15T11:20:22,101 adding 'polyply/data/martini3/citations.bib' 2022-11-15T11:20:22,104 adding 'polyply/data/martini3/dextran.martini3.ff' 2022-11-15T11:20:22,108 adding 'polyply/data/martini3_beta/PEO.martini.3.itp' 2022-11-15T11:20:22,110 adding 'polyply/data/martini3_beta/citations.bib' 2022-11-15T11:20:22,114 adding 'polyply/data/oplsaaLigParGen/OHter.ff' 2022-11-15T11:20:22,117 adding 'polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff' 2022-11-15T11:20:22,120 adding 'polyply/data/oplsaaLigParGen/citations.bib' 2022-11-15T11:20:22,123 adding 'polyply/data/oplsaaLigParGen/links.ff' 2022-11-15T11:20:22,126 adding 'polyply/data/parmbsc1/citations.bib' 2022-11-15T11:20:22,141 adding 'polyply/data/parmbsc1/dna_final.ff' 2022-11-15T11:20:22,147 adding 'polyply/src/__init__.py' 2022-11-15T11:20:22,151 adding 'polyply/src/annotate_ligands.py' 2022-11-15T11:20:22,158 adding 'polyply/src/apply_links.py' 2022-11-15T11:20:22,161 adding 'polyply/src/apply_modifications.py' 2022-11-15T11:20:22,165 adding 'polyply/src/backmap.py' 2022-11-15T11:20:22,170 adding 'polyply/src/build_file_parser.py' 2022-11-15T11:20:22,174 adding 'polyply/src/build_system.py' 2022-11-15T11:20:22,177 adding 'polyply/src/check_residue_equivalence.py' 2022-11-15T11:20:22,180 adding 'polyply/src/ff_parser_sub.py' 2022-11-15T11:20:22,185 adding 'polyply/src/gen_coords.py' 2022-11-15T11:20:22,188 adding 'polyply/src/gen_itp.py' 2022-11-15T11:20:22,193 adding 'polyply/src/gen_seq.py' 2022-11-15T11:20:22,198 adding 'polyply/src/generate_templates.py' 2022-11-15T11:20:22,202 adding 'polyply/src/graph_utils.py' 2022-11-15T11:20:22,206 adding 'polyply/src/linalg_functions.py' 2022-11-15T11:20:22,209 adding 'polyply/src/load_library.py' 2022-11-15T11:20:22,211 adding 'polyply/src/logging.py' 2022-11-15T11:20:22,216 adding 'polyply/src/map_to_molecule.py' 2022-11-15T11:20:22,221 adding 'polyply/src/meta_molecule.py' 2022-11-15T11:20:22,225 adding 'polyply/src/minimizer.py' 2022-11-15T11:20:22,230 adding 'polyply/src/nonbond_engine.py' 2022-11-15T11:20:22,234 adding 'polyply/src/persistence.py' 2022-11-15T11:20:22,238 adding 'polyply/src/polyply_parser.py' 2022-11-15T11:20:22,241 adding 'polyply/src/processor.py' 2022-11-15T11:20:22,246 adding 'polyply/src/random_walk.py' 2022-11-15T11:20:22,249 adding 'polyply/src/restraints.py' 2022-11-15T11:20:22,253 adding 'polyply/src/simple_seq_parsers.py' 2022-11-15T11:20:22,259 adding 'polyply/src/top_parser.py' 2022-11-15T11:20:22,266 adding 'polyply/src/topology.py' 2022-11-15T11:20:22,269 adding 'polyply/src/virtual_site_builder.py' 2022-11-15T11:20:22,274 adding 'polyply/tests/__init__.py' 2022-11-15T11:20:22,277 adding 'polyply/tests/example_fixtures.py' 2022-11-15T11:20:22,280 adding 'polyply/tests/test_annotate_lingads.py' 2022-11-15T11:20:22,286 adding 'polyply/tests/test_apply_links.py' 2022-11-15T11:20:22,290 adding 'polyply/tests/test_backmap.py' 2022-11-15T11:20:22,294 adding 'polyply/tests/test_build_file_parser.py' 2022-11-15T11:20:22,298 adding 'polyply/tests/test_build_system.py' 2022-11-15T11:20:22,301 adding 'polyply/tests/test_ff_parser.py' 2022-11-15T11:20:22,304 adding 'polyply/tests/test_gen_coords.py' 2022-11-15T11:20:22,307 adding 'polyply/tests/test_gen_coords_logic.py' 2022-11-15T11:20:22,310 adding 'polyply/tests/test_gen_params.py' 2022-11-15T11:20:22,314 adding 'polyply/tests/test_gen_seq.py' 2022-11-15T11:20:22,317 adding 'polyply/tests/test_generate_templates.py' 2022-11-15T11:20:22,320 adding 'polyply/tests/test_graph_utils.py' 2022-11-15T11:20:22,324 adding 'polyply/tests/test_itp_files.py' 2022-11-15T11:20:22,329 adding 'polyply/tests/test_lib_files.py' 2022-11-15T11:20:22,332 adding 'polyply/tests/test_linalg.py' 2022-11-15T11:20:22,334 adding 'polyply/tests/test_load_library.py' 2022-11-15T11:20:22,337 adding 'polyply/tests/test_logging.py' 2022-11-15T11:20:22,341 adding 'polyply/tests/test_map_to_molecule.py' 2022-11-15T11:20:22,345 adding 'polyply/tests/test_meta_molecule.py' 2022-11-15T11:20:22,349 adding 'polyply/tests/test_nb_engine.py' 2022-11-15T11:20:22,353 adding 'polyply/tests/test_optimize_geometry.py' 2022-11-15T11:20:22,357 adding 'polyply/tests/test_persistence.py' 2022-11-15T11:20:22,361 adding 'polyply/tests/test_polyply_input.py' 2022-11-15T11:20:22,365 adding 'polyply/tests/test_random_walk.py' 2022-11-15T11:20:22,369 adding 'polyply/tests/test_residue_check.py' 2022-11-15T11:20:22,371 adding 'polyply/tests/test_restraints.py' 2022-11-15T11:20:22,374 adding 'polyply/tests/test_simple_seq_parsers.py' 2022-11-15T11:20:22,379 adding 'polyply/tests/test_top_parser.py' 2022-11-15T11:20:22,384 adding 'polyply/tests/test_topology.py' 2022-11-15T11:20:22,387 adding 'polyply/tests/test_vs_builder.py' 2022-11-15T11:20:22,396 adding 'polyply/tests/test_data/ff/aminoacids.ff' 2022-11-15T11:20:22,402 adding 'polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp' 2022-11-15T11:20:22,404 adding 'polyply/tests/test_data/gen_params/input/PEO.martini.3.itp' 2022-11-15T11:20:22,407 adding 'polyply/tests/test_data/gen_params/input/PPI.ff' 2022-11-15T11:20:22,410 adding 'polyply/tests/test_data/gen_params/input/PPI.json' 2022-11-15T11:20:22,413 adding 'polyply/tests/test_data/gen_params/input/PS.json' 2022-11-15T11:20:22,416 adding 'polyply/tests/test_data/gen_params/input/PS.martini.2.itp' 2022-11-15T11:20:22,419 adding 'polyply/tests/test_data/gen_params/input/removal.ff' 2022-11-15T11:20:22,422 adding 'polyply/tests/test_data/gen_params/input/test.ff' 2022-11-15T11:20:22,426 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.ff' 2022-11-15T11:20:22,429 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.json' 2022-11-15T11:20:22,434 adding 'polyply/tests/test_data/gen_params/output/P3HT_out.itp' 2022-11-15T11:20:22,437 adding 'polyply/tests/test_data/gen_params/output/PEO_out.itp' 2022-11-15T11:20:22,439 adding 'polyply/tests/test_data/gen_params/output/PPI_out.itp' 2022-11-15T11:20:22,443 adding 'polyply/tests/test_data/gen_params/output/PS_out.itp' 2022-11-15T11:20:22,445 adding 'polyply/tests/test_data/gen_params/output/removal.itp' 2022-11-15T11:20:22,448 adding 'polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp' 2022-11-15T11:20:22,451 adding 'polyply/tests/test_data/gen_params/output/test_out.itp' 2022-11-15T11:20:22,454 adding 'polyply/tests/test_data/gen_params/ref/G3.itp' 2022-11-15T11:20:22,458 adding 'polyply/tests/test_data/gen_params/ref/P3HT_10.itp' 2022-11-15T11:20:22,462 adding 'polyply/tests/test_data/gen_params/ref/PEO_10.itp' 2022-11-15T11:20:22,466 adding 'polyply/tests/test_data/gen_params/ref/PS_10.itp' 2022-11-15T11:20:22,470 adding 'polyply/tests/test_data/gen_params/ref/end.itp' 2022-11-15T11:20:22,474 adding 'polyply/tests/test_data/gen_params/ref/removal.itp' 2022-11-15T11:20:22,476 adding 'polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp' 2022-11-15T11:20:22,479 adding 'polyply/tests/test_data/gen_params/ref/test_rev.itp' 2022-11-15T11:20:22,500 adding 'polyply/tests/test_data/gen_seq/input/molecule_0.itp' 2022-11-15T11:20:22,504 adding 'polyply/tests/test_data/gen_seq/output/PEO_PS.json' 2022-11-15T11:20:22,507 adding 'polyply/tests/test_data/gen_seq/output/PPI.json' 2022-11-15T11:20:22,523 adding 'polyply/tests/test_data/gen_seq/output/lysoPEG.json' 2022-11-15T11:20:22,538 adding 'polyply/tests/test_data/gen_seq/output/lyso_PEG.json' 2022-11-15T11:20:22,543 adding 'polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json' 2022-11-15T11:20:22,546 adding 'polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json' 2022-11-15T11:20:22,549 adding 'polyply/tests/test_data/gen_seq/ref/PPI_ref.json' 2022-11-15T11:20:22,555 adding 'polyply/tests/test_data/gen_seq/ref/lyso_PEG.json' 2022-11-15T11:20:22,559 adding 'polyply/tests/test_data/itp/PEO.itp' 2022-11-15T11:20:22,563 adding 'polyply/tests/test_data/json/double_branch.json' 2022-11-15T11:20:22,565 adding 'polyply/tests/test_data/json/fail.json' 2022-11-15T11:20:22,568 adding 'polyply/tests/test_data/json/hyperbranched.json' 2022-11-15T11:20:22,570 adding 'polyply/tests/test_data/json/linear.json' 2022-11-15T11:20:22,572 adding 'polyply/tests/test_data/json/linear_rev.json' 2022-11-15T11:20:22,575 adding 'polyply/tests/test_data/json/single_branch.json' 2022-11-15T11:20:22,582 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp' 2022-11-15T11:20:22,585 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command' 2022-11-15T11:20:22,588 adding 'polyply/tests/test_data/library_tests/2016H66/PE/PE.json' 2022-11-15T11:20:22,592 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp' 2022-11-15T11:20:22,594 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/command' 2022-11-15T11:20:22,598 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json' 2022-11-15T11:20:22,602 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp' 2022-11-15T11:20:22,605 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command' 2022-11-15T11:20:22,608 adding 'polyply/tests/test_data/library_tests/2016H66/PP/PP.json' 2022-11-15T11:20:22,612 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp' 2022-11-15T11:20:22,615 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/command' 2022-11-15T11:20:22,618 adding 'polyply/tests/test_data/library_tests/2016H66/PS/PS.json' 2022-11-15T11:20:22,624 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp' 2022-11-15T11:20:22,626 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/command' 2022-11-15T11:20:22,630 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json' 2022-11-15T11:20:22,635 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp' 2022-11-15T11:20:22,637 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command' 2022-11-15T11:20:22,649 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp' 2022-11-15T11:20:22,652 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command' 2022-11-15T11:20:22,657 adding 'polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp' 2022-11-15T11:20:22,663 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp' 2022-11-15T11:20:22,665 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/command' 2022-11-15T11:20:22,672 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp' 2022-11-15T11:20:22,674 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/command' 2022-11-15T11:20:22,678 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json' 2022-11-15T11:20:22,681 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp' 2022-11-15T11:20:22,684 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command' 2022-11-15T11:20:22,688 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp' 2022-11-15T11:20:22,691 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/command' 2022-11-15T11:20:22,779 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp' 2022-11-15T11:20:22,788 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json' 2022-11-15T11:20:22,792 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command' 2022-11-15T11:20:22,895 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp' 2022-11-15T11:20:22,915 adding 'polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp' 2022-11-15T11:20:22,918 adding 'polyply/tests/test_data/library_tests/martini3/CEL/polyply/command' 2022-11-15T11:20:22,924 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp' 2022-11-15T11:20:22,926 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/command' 2022-11-15T11:20:22,931 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp' 2022-11-15T11:20:22,934 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command' 2022-11-15T11:20:22,939 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp' 2022-11-15T11:20:22,941 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/command' 2022-11-15T11:20:22,946 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp' 2022-11-15T11:20:22,949 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/command' 2022-11-15T11:20:22,956 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp' 2022-11-15T11:20:22,959 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/command' 2022-11-15T11:20:22,969 adding 'polyply/tests/test_data/library_tests/martini3/PROT/init.itp' 2022-11-15T11:20:22,973 adding 'polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json' 2022-11-15T11:20:22,984 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp' 2022-11-15T11:20:22,987 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/command' 2022-11-15T11:20:22,992 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp' 2022-11-15T11:20:22,995 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/command' 2022-11-15T11:20:23,001 adding 'polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp' 2022-11-15T11:20:23,003 adding 'polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command' 2022-11-15T11:20:23,012 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp' 2022-11-15T11:20:23,015 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command' 2022-11-15T11:20:23,076 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp' 2022-11-15T11:20:23,081 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json' 2022-11-15T11:20:23,145 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp' 2022-11-15T11:20:23,151 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command' 2022-11-15T11:20:23,156 adding 'polyply/tests/test_data/polyply/P3HT.martini.2.itp' 2022-11-15T11:20:23,159 adding 'polyply/tests/test_data/polyply/PDADMA.martini.2.itp' 2022-11-15T11:20:23,161 adding 'polyply/tests/test_data/polyply/PE.martini.2.itp' 2022-11-15T11:20:23,164 adding 'polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp' 2022-11-15T11:20:23,167 adding 'polyply/tests/test_data/polyply/PEO.martini.2.itp' 2022-11-15T11:20:23,170 adding 'polyply/tests/test_data/polyply/PEO.martini.3.itp' 2022-11-15T11:20:23,172 adding 'polyply/tests/test_data/polyply/PP.martini.2.itp' 2022-11-15T11:20:23,175 adding 'polyply/tests/test_data/polyply/PS.martini.2.itp' 2022-11-15T11:20:23,178 adding 'polyply/tests/test_data/polyply/PSS.martini.2.itp' 2022-11-15T11:20:23,182 adding 'polyply/tests/test_data/simple_seq_files/test.fasta' 2022-11-15T11:20:23,185 adding 'polyply/tests/test_data/simple_seq_files/test.ig' 2022-11-15T11:20:23,187 adding 'polyply/tests/test_data/simple_seq_files/test.txt' 2022-11-15T11:20:23,190 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.fasta' 2022-11-15T11:20:23,192 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.ig' 2022-11-15T11:20:23,194 adding 'polyply/tests/test_data/simple_seq_files/test_circle.ig' 2022-11-15T11:20:23,197 adding 'polyply/tests/test_data/simple_seq_files/test_fail.ig' 2022-11-15T11:20:23,201 adding 'polyply/tests/test_data/struc_build/PEO.itp' 2022-11-15T11:20:23,213 adding 'polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp' 2022-11-15T11:20:23,216 adding 'polyply/tests/test_data/struc_build/system.top' 2022-11-15T11:20:23,221 adding 'polyply/tests/test_data/topology_test/W.itp' 2022-11-15T11:20:23,223 adding 'polyply/tests/test_data/topology_test/cog.gro' 2022-11-15T11:20:23,226 adding 'polyply/tests/test_data/topology_test/cog_missing.gro' 2022-11-15T11:20:23,229 adding 'polyply/tests/test_data/topology_test/complete.gro' 2022-11-15T11:20:23,231 adding 'polyply/tests/test_data/topology_test/fail.gro' 2022-11-15T11:20:23,317 adding 'polyply/tests/test_data/topology_test/ffnonbonded.itp' 2022-11-15T11:20:23,327 adding 'polyply/tests/test_data/topology_test/meta.gro' 2022-11-15T11:20:23,369 adding 'polyply/tests/test_data/topology_test/molecule_0.itp' 2022-11-15T11:20:23,374 adding 'polyply/tests/test_data/topology_test/pdb.top' 2022-11-15T11:20:23,377 adding 'polyply/tests/test_data/topology_test/system.top' 2022-11-15T11:20:23,379 adding 'polyply/tests/test_data/topology_test/test.gro' 2022-11-15T11:20:23,382 adding 'polyply/tests/test_data/topology_test/test.itp' 2022-11-15T11:20:23,413 adding 'polyply/tests/test_data/topology_test/test.pdb' 2022-11-15T11:20:23,422 adding 'polyply-1.4.1.data/scripts/polyply' 2022-11-15T11:20:23,427 adding 'polyply-1.4.1.dist-info/AUTHORS' 2022-11-15T11:20:23,432 adding 'polyply-1.4.1.dist-info/LICENSE' 2022-11-15T11:20:23,435 adding 'polyply-1.4.1.dist-info/METADATA' 2022-11-15T11:20:23,437 adding 'polyply-1.4.1.dist-info/WHEEL' 2022-11-15T11:20:23,439 adding 'polyply-1.4.1.dist-info/pbr.json' 2022-11-15T11:20:23,441 adding 'polyply-1.4.1.dist-info/top_level.txt' 2022-11-15T11:20:23,451 adding 'polyply-1.4.1.dist-info/RECORD' 2022-11-15T11:20:23,491 removing build/bdist.linux-armv7l/wheel 2022-11-15T11:20:23,665 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.parmbsc1.DNA' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:23,666 !! 2022-11-15T11:20:23,667 ############################ 2022-11-15T11:20:23,667 # Package would be ignored # 2022-11-15T11:20:23,668 ############################ 2022-11-15T11:20:23,668 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA' as an importable package, 2022-11-15T11:20:23,668 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:23,669 'polyply.tests.test_data.library_tests.parmbsc1.DNA' has been automatically added to the distribution only 2022-11-15T11:20:23,669 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:23,670 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:23,670 Please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA' is included as a package by using 2022-11-15T11:20:23,671 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:23,671 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:23,671 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:23,672 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:23,672 documentation page. 2022-11-15T11:20:23,673 !! 2022-11-15T11:20:23,674 check.warn(importable) 2022-11-15T11:20:23,674 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:23,674 !! 2022-11-15T11:20:23,675 ############################ 2022-11-15T11:20:23,675 # Package would be ignored # 2022-11-15T11:20:23,676 ############################ 2022-11-15T11:20:23,676 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' as an importable package, 2022-11-15T11:20:23,676 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:23,677 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' has been automatically added to the distribution only 2022-11-15T11:20:23,677 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:23,678 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:23,678 Please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' is included as a package by using 2022-11-15T11:20:23,679 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:23,679 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:23,679 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:23,680 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:23,680 documentation page. 2022-11-15T11:20:23,681 !! 2022-11-15T11:20:23,682 check.warn(importable) 2022-11-15T11:20:23,683 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.polyply' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:23,683 !! 2022-11-15T11:20:23,685 ############################ 2022-11-15T11:20:23,685 # Package would be ignored # 2022-11-15T11:20:23,686 ############################ 2022-11-15T11:20:23,686 Python recognizes 'polyply.tests.test_data.polyply' as an importable package, 2022-11-15T11:20:23,686 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:23,687 'polyply.tests.test_data.polyply' has been automatically added to the distribution only 2022-11-15T11:20:23,688 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:23,688 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:23,689 Please make sure that 'polyply.tests.test_data.polyply' is included as a package by using 2022-11-15T11:20:23,689 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:23,690 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:23,690 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:23,691 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:23,691 documentation page. 2022-11-15T11:20:23,692 !! 2022-11-15T11:20:23,693 check.warn(importable) 2022-11-15T11:20:23,694 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.simple_seq_files' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:23,694 !! 2022-11-15T11:20:23,695 ############################ 2022-11-15T11:20:23,696 # Package would be ignored # 2022-11-15T11:20:23,696 ############################ 2022-11-15T11:20:23,697 Python recognizes 'polyply.tests.test_data.simple_seq_files' as an importable package, 2022-11-15T11:20:23,697 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:23,698 'polyply.tests.test_data.simple_seq_files' has been automatically added to the distribution only 2022-11-15T11:20:23,699 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:23,699 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:23,700 Please make sure that 'polyply.tests.test_data.simple_seq_files' is included as a package by using 2022-11-15T11:20:23,700 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:23,701 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:23,701 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:23,702 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:23,702 documentation page. 2022-11-15T11:20:23,703 !! 2022-11-15T11:20:23,704 check.warn(importable) 2022-11-15T11:20:23,705 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.struc_build' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:23,705 !! 2022-11-15T11:20:23,706 ############################ 2022-11-15T11:20:23,706 # Package would be ignored # 2022-11-15T11:20:23,707 ############################ 2022-11-15T11:20:23,707 Python recognizes 'polyply.tests.test_data.struc_build' as an importable package, 2022-11-15T11:20:23,708 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:23,708 'polyply.tests.test_data.struc_build' has been automatically added to the distribution only 2022-11-15T11:20:23,709 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:23,709 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:23,710 Please make sure that 'polyply.tests.test_data.struc_build' is included as a package by using 2022-11-15T11:20:23,710 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:23,711 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:23,711 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:23,712 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:23,712 documentation page. 2022-11-15T11:20:23,713 !! 2022-11-15T11:20:23,714 check.warn(importable) 2022-11-15T11:20:23,714 /tmp/pip-build-env-d8dqlyau/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.topology_test' as data is deprecated, please list it in `packages`. 2022-11-15T11:20:23,715 !! 2022-11-15T11:20:23,716 ############################ 2022-11-15T11:20:23,716 # Package would be ignored # 2022-11-15T11:20:23,717 ############################ 2022-11-15T11:20:23,717 Python recognizes 'polyply.tests.test_data.topology_test' as an importable package, 2022-11-15T11:20:23,718 but it is not listed in the `packages` configuration of setuptools. 2022-11-15T11:20:23,718 'polyply.tests.test_data.topology_test' has been automatically added to the distribution only 2022-11-15T11:20:23,719 because it may contain data files, but this behavior is likely to change 2022-11-15T11:20:23,719 in future versions of setuptools (and therefore is considered deprecated). 2022-11-15T11:20:23,720 Please make sure that 'polyply.tests.test_data.topology_test' is included as a package by using 2022-11-15T11:20:23,720 the `packages` configuration field or the proper discovery methods 2022-11-15T11:20:23,720 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-15T11:20:23,721 instead of `find_packages(...)`/`find:`). 2022-11-15T11:20:23,721 You can read more about "package discovery" and "data files" on setuptools 2022-11-15T11:20:23,722 documentation page. 2022-11-15T11:20:23,723 !! 2022-11-15T11:20:23,724 check.warn(importable) 2022-11-15T11:20:23,927 Building wheel for polyply (pyproject.toml): finished with status 'done' 2022-11-15T11:20:23,975 Created wheel for polyply: filename=polyply-1.4.1-py2.py3-none-any.whl size=631725 sha256=90886eb9dd59380a2544798fec37eb01f98a13be0438dc8a2437fd98770abb8f 2022-11-15T11:20:23,977 Stored in directory: /tmp/pip-ephem-wheel-cache-fln_oj8_/wheels/35/d2/e9/d5bc21d9b7fb3dd25503c31d7189272a123fbea183af1563b7 2022-11-15T11:20:24,025 Successfully built polyply 2022-11-15T11:20:24,080 Removed build tracker: '/tmp/pip-build-tracker-0cgt1xaq'