2022-11-17T13:46:29,062 Created temporary directory: /tmp/pip-ephem-wheel-cache-by1u6rp9 2022-11-17T13:46:29,067 Created temporary directory: /tmp/pip-build-tracker-8o367l71 2022-11-17T13:46:29,067 Initialized build tracking at /tmp/pip-build-tracker-8o367l71 2022-11-17T13:46:29,068 Created build tracker: /tmp/pip-build-tracker-8o367l71 2022-11-17T13:46:29,068 Entered build tracker: /tmp/pip-build-tracker-8o367l71 2022-11-17T13:46:29,069 Created temporary directory: /tmp/pip-wheel-t2vokpfm 2022-11-17T13:46:29,077 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-17T13:46:29,082 Created temporary directory: /tmp/pip-ephem-wheel-cache-ump_fa0x 2022-11-17T13:46:29,133 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-17T13:46:29,140 2 location(s) to search for versions of atlas-densities: 2022-11-17T13:46:29,140 * https://pypi.org/simple/atlas-densities/ 2022-11-17T13:46:29,140 * https://www.piwheels.org/simple/atlas-densities/ 2022-11-17T13:46:29,142 Fetching project page and analyzing links: https://pypi.org/simple/atlas-densities/ 2022-11-17T13:46:29,143 Getting page https://pypi.org/simple/atlas-densities/ 2022-11-17T13:46:29,146 Found index url https://pypi.org/simple 2022-11-17T13:46:29,375 Fetched page https://pypi.org/simple/atlas-densities/ as application/vnd.pypi.simple.v1+json 2022-11-17T13:46:29,380 Found link https://files.pythonhosted.org/packages/75/a0/31e863dae4118b005ede7f6d9098a6910b9864be8a7912235629124fd1fe/atlas-densities-0.1.1.dev1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1.dev1 2022-11-17T13:46:29,381 Found link https://files.pythonhosted.org/packages/de/06/e8be8865b4bd500f567d873b884c95bc950e82d6b629daf4d2b51feee07f/atlas-densities-0.1.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1 2022-11-17T13:46:29,383 Found link https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.2 2022-11-17T13:46:29,384 Found link https://files.pythonhosted.org/packages/d4/ff/487cd59cb1c04b581dfba1c835112a7d148c70f90af88e968e5013cfd229/atlas-densities-0.1.3.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.3 2022-11-17T13:46:29,385 Fetching project page and analyzing links: https://www.piwheels.org/simple/atlas-densities/ 2022-11-17T13:46:29,386 Getting page https://www.piwheels.org/simple/atlas-densities/ 2022-11-17T13:46:29,388 Found index url https://www.piwheels.org/simple 2022-11-17T13:46:29,634 Fetched page https://www.piwheels.org/simple/atlas-densities/ as text/html 2022-11-17T13:46:29,639 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.2-py3-none-any.whl#sha256=8525ddeb5820cac5646a8e64609c379dfeda0ef3c1e0fddf611b904fe6717f9a (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2022-11-17T13:46:29,640 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1-py3-none-any.whl#sha256=0d8958b6a96c5a8bbb5f56954b074f97f56f62d4bf7d2feb02f324fdd9365ce4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2022-11-17T13:46:29,640 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1.dev1-py3-none-any.whl#sha256=d5e13258a7e5662c891cc5061dc517d14138a9ea76e72ad43d422c688c5c73b6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2022-11-17T13:46:29,641 Skipping link: not a file: https://www.piwheels.org/simple/atlas-densities/ 2022-11-17T13:46:29,641 Skipping link: not a file: https://pypi.org/simple/atlas-densities/ 2022-11-17T13:46:29,674 Given no hashes to check 1 links for project 'atlas-densities': discarding no candidates 2022-11-17T13:46:29,708 Collecting atlas-densities==0.1.3 2022-11-17T13:46:29,712 Created temporary directory: /tmp/pip-unpack-76vrn7ql 2022-11-17T13:46:30,930 Downloading atlas-densities-0.1.3.tar.gz (1.3 MB) 2022-11-17T13:46:32,270 Added atlas-densities==0.1.3 from https://files.pythonhosted.org/packages/d4/ff/487cd59cb1c04b581dfba1c835112a7d148c70f90af88e968e5013cfd229/atlas-densities-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-8o367l71' 2022-11-17T13:46:32,273 Running setup.py (path:/tmp/pip-wheel-t2vokpfm/atlas-densities_8d3737c08993484c9bbab83388191e1b/setup.py) egg_info for package atlas-densities 2022-11-17T13:46:32,274 Created temporary directory: /tmp/pip-pip-egg-info-y0z_b5i_ 2022-11-17T13:46:32,275 Preparing metadata (setup.py): started 2022-11-17T13:46:32,277 Running command python setup.py egg_info 2022-11-17T13:46:45,877 running egg_info 2022-11-17T13:46:45,885 creating /tmp/pip-pip-egg-info-y0z_b5i_/atlas_densities.egg-info 2022-11-17T13:46:45,956 writing /tmp/pip-pip-egg-info-y0z_b5i_/atlas_densities.egg-info/PKG-INFO 2022-11-17T13:46:45,962 writing dependency_links to /tmp/pip-pip-egg-info-y0z_b5i_/atlas_densities.egg-info/dependency_links.txt 2022-11-17T13:46:45,966 writing entry points to /tmp/pip-pip-egg-info-y0z_b5i_/atlas_densities.egg-info/entry_points.txt 2022-11-17T13:46:45,970 writing requirements to /tmp/pip-pip-egg-info-y0z_b5i_/atlas_densities.egg-info/requires.txt 2022-11-17T13:46:45,972 writing top-level names to /tmp/pip-pip-egg-info-y0z_b5i_/atlas_densities.egg-info/top_level.txt 2022-11-17T13:46:45,975 writing manifest file '/tmp/pip-pip-egg-info-y0z_b5i_/atlas_densities.egg-info/SOURCES.txt' 2022-11-17T13:46:46,330 /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. 2022-11-17T13:46:46,330 SetuptoolsDeprecationWarning, 2022-11-17T13:46:46,331 listing git files failed - pretending there aren't any 2022-11-17T13:46:46,353 reading manifest file '/tmp/pip-pip-egg-info-y0z_b5i_/atlas_densities.egg-info/SOURCES.txt' 2022-11-17T13:46:46,357 reading manifest template 'MANIFEST.in' 2022-11-17T13:46:46,459 adding license file 'LICENSE.txt' 2022-11-17T13:46:46,460 adding license file 'AUTHORS.txt' 2022-11-17T13:46:46,477 writing manifest file '/tmp/pip-pip-egg-info-y0z_b5i_/atlas_densities.egg-info/SOURCES.txt' 2022-11-17T13:46:46,713 Preparing metadata (setup.py): finished with status 'done' 2022-11-17T13:46:46,730 Source in /tmp/pip-wheel-t2vokpfm/atlas-densities_8d3737c08993484c9bbab83388191e1b has version 0.1.3, which satisfies requirement atlas-densities==0.1.3 from https://files.pythonhosted.org/packages/d4/ff/487cd59cb1c04b581dfba1c835112a7d148c70f90af88e968e5013cfd229/atlas-densities-0.1.3.tar.gz 2022-11-17T13:46:46,732 Removed atlas-densities==0.1.3 from https://files.pythonhosted.org/packages/d4/ff/487cd59cb1c04b581dfba1c835112a7d148c70f90af88e968e5013cfd229/atlas-densities-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-8o367l71' 2022-11-17T13:46:46,750 Created temporary directory: /tmp/pip-unpack-bbslq1kp 2022-11-17T13:46:46,751 Building wheels for collected packages: atlas-densities 2022-11-17T13:46:46,761 Created temporary directory: /tmp/pip-wheel-rldhvub8 2022-11-17T13:46:46,762 Building wheel for atlas-densities (setup.py): started 2022-11-17T13:46:46,764 Destination directory: /tmp/pip-wheel-rldhvub8 2022-11-17T13:46:46,764 Running command python setup.py bdist_wheel 2022-11-17T13:46:49,082 /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. 2022-11-17T13:46:49,083 SetuptoolsDeprecationWarning, 2022-11-17T13:46:50,940 running bdist_wheel 2022-11-17T13:46:51,737 running build 2022-11-17T13:46:51,737 running build_py 2022-11-17T13:46:51,815 creating build 2022-11-17T13:46:51,816 creating build/lib 2022-11-17T13:46:51,817 creating build/lib/tests 2022-11-17T13:46:51,819 copying tests/__init__.py -> build/lib/tests 2022-11-17T13:46:51,822 copying tests/mocking_tools.py -> build/lib/tests 2022-11-17T13:46:51,825 copying tests/test_utils.py -> build/lib/tests 2022-11-17T13:46:51,831 creating build/lib/atlas_densities 2022-11-17T13:46:51,832 copying atlas_densities/__init__.py -> build/lib/atlas_densities 2022-11-17T13:46:51,836 copying atlas_densities/utils.py -> build/lib/atlas_densities 2022-11-17T13:46:51,840 copying atlas_densities/exceptions.py -> build/lib/atlas_densities 2022-11-17T13:46:51,843 copying atlas_densities/version.py -> build/lib/atlas_densities 2022-11-17T13:46:51,848 creating build/lib/tests/app 2022-11-17T13:46:51,849 copying tests/app/__init__.py -> build/lib/tests/app 2022-11-17T13:46:51,852 copying tests/app/test_refined_inhibitory_neuron_densities.py -> build/lib/tests/app 2022-11-17T13:46:51,856 copying tests/app/test_combination.py -> build/lib/tests/app 2022-11-17T13:46:51,859 copying tests/app/test_cell_densities.py -> build/lib/tests/app 2022-11-17T13:46:51,864 copying tests/app/test_mtype_densities.py -> build/lib/tests/app 2022-11-17T13:46:51,871 creating build/lib/tests/densities 2022-11-17T13:46:51,872 copying tests/densities/__init__.py -> build/lib/tests/densities 2022-11-17T13:46:51,875 copying tests/densities/test_measurement_to_density.py -> build/lib/tests/densities 2022-11-17T13:46:51,879 copying tests/densities/test_utils.py -> build/lib/tests/densities 2022-11-17T13:46:51,884 copying tests/densities/test_glia_densities.py -> build/lib/tests/densities 2022-11-17T13:46:51,887 copying tests/densities/test_fitting.py -> build/lib/tests/densities 2022-11-17T13:46:51,892 copying tests/densities/test_inhibitory_neuron_density_optimization.py -> build/lib/tests/densities 2022-11-17T13:46:51,896 copying tests/densities/test_refined_inhibitory_neuron_density.py -> build/lib/tests/densities 2022-11-17T13:46:51,900 copying tests/densities/test_excitatory_inhibitory_splitting.py -> build/lib/tests/densities 2022-11-17T13:46:51,904 copying tests/densities/test_cell_counts.py -> build/lib/tests/densities 2022-11-17T13:46:51,908 copying tests/densities/test_mtype_densities_from_composition.py -> build/lib/tests/densities 2022-11-17T13:46:51,912 copying tests/densities/test_optimization_initialization.py -> build/lib/tests/densities 2022-11-17T13:46:51,917 copying tests/densities/test_inhibitory_neuron_density.py -> build/lib/tests/densities 2022-11-17T13:46:51,921 copying tests/densities/test_cell_density.py -> build/lib/tests/densities 2022-11-17T13:46:51,924 copying tests/densities/test_mtype_densities_from_profiles.py -> build/lib/tests/densities 2022-11-17T13:46:51,928 copying tests/densities/test_mtype_densities_from_map.py -> build/lib/tests/densities 2022-11-17T13:46:51,932 copying tests/densities/test_excel_reader.py -> build/lib/tests/densities 2022-11-17T13:46:51,937 copying tests/densities/test_inhibitory_neuron_densities_helper.py -> build/lib/tests/densities 2022-11-17T13:46:51,942 creating build/lib/tests/combination 2022-11-17T13:46:51,944 copying tests/combination/test_annotations_combinator.py -> build/lib/tests/combination 2022-11-17T13:46:51,948 copying tests/combination/__init__.py -> build/lib/tests/combination 2022-11-17T13:46:51,951 copying tests/combination/test_markers_combinator.py -> build/lib/tests/combination 2022-11-17T13:46:51,956 creating build/lib/atlas_densities/app 2022-11-17T13:46:51,957 copying atlas_densities/app/__init__.py -> build/lib/atlas_densities/app 2022-11-17T13:46:51,961 copying atlas_densities/app/cell_densities.py -> build/lib/atlas_densities/app 2022-11-17T13:46:51,966 copying atlas_densities/app/mtype_densities.py -> build/lib/atlas_densities/app 2022-11-17T13:46:51,971 copying atlas_densities/app/utils.py -> build/lib/atlas_densities/app 2022-11-17T13:46:51,974 copying atlas_densities/app/cli.py -> build/lib/atlas_densities/app 2022-11-17T13:46:51,977 copying atlas_densities/app/combination.py -> build/lib/atlas_densities/app 2022-11-17T13:46:51,984 creating build/lib/atlas_densities/densities 2022-11-17T13:46:51,985 copying atlas_densities/densities/__init__.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:51,988 copying atlas_densities/densities/fitting.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:51,993 copying atlas_densities/densities/inhibitory_neuron_density.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:51,997 copying atlas_densities/densities/utils.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,002 copying atlas_densities/densities/mtype_densities_from_map.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,006 copying atlas_densities/densities/cell_density.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,010 copying atlas_densities/densities/cell_counts.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,014 copying atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,018 copying atlas_densities/densities/mtype_densities_from_profiles.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,022 copying atlas_densities/densities/glia_densities.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,026 copying atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,032 copying atlas_densities/densities/excel_reader.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,037 copying atlas_densities/densities/mtype_densities_from_composition.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,040 copying atlas_densities/densities/measurement_to_density.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,045 copying atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,048 copying atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/lib/atlas_densities/densities 2022-11-17T13:46:52,054 creating build/lib/atlas_densities/combination 2022-11-17T13:46:52,056 copying atlas_densities/combination/__init__.py -> build/lib/atlas_densities/combination 2022-11-17T13:46:52,058 copying atlas_densities/combination/annotations_combinator.py -> build/lib/atlas_densities/combination 2022-11-17T13:46:52,062 copying atlas_densities/combination/markers_combinator.py -> build/lib/atlas_densities/combination 2022-11-17T13:46:52,067 creating build/lib/atlas_densities/app/data 2022-11-17T13:46:52,068 copying atlas_densities/app/data/__init__.py -> build/lib/atlas_densities/app/data 2022-11-17T13:46:52,071 running egg_info 2022-11-17T13:46:52,218 writing atlas_densities.egg-info/PKG-INFO 2022-11-17T13:46:52,223 writing dependency_links to atlas_densities.egg-info/dependency_links.txt 2022-11-17T13:46:52,227 writing entry points to atlas_densities.egg-info/entry_points.txt 2022-11-17T13:46:52,229 writing requirements to atlas_densities.egg-info/requires.txt 2022-11-17T13:46:52,231 writing top-level names to atlas_densities.egg-info/top_level.txt 2022-11-17T13:46:52,417 listing git files failed - pretending there aren't any 2022-11-17T13:46:52,435 reading manifest file 'atlas_densities.egg-info/SOURCES.txt' 2022-11-17T13:46:52,472 reading manifest template 'MANIFEST.in' 2022-11-17T13:46:52,534 adding license file 'LICENSE.txt' 2022-11-17T13:46:52,535 adding license file 'AUTHORS.txt' 2022-11-17T13:46:52,560 writing manifest file 'atlas_densities.egg-info/SOURCES.txt' 2022-11-17T13:46:52,567 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.markers' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,568 !! 2022-11-17T13:46:52,569 ############################ 2022-11-17T13:46:52,569 # Package would be ignored # 2022-11-17T13:46:52,569 ############################ 2022-11-17T13:46:52,570 Python recognizes 'atlas_densities.app.data.markers' as an importable package, 2022-11-17T13:46:52,570 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,571 'atlas_densities.app.data.markers' has been automatically added to the distribution only 2022-11-17T13:46:52,571 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,571 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,572 Please make sure that 'atlas_densities.app.data.markers' is included as a package by using 2022-11-17T13:46:52,572 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,573 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,573 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,574 documentation page. 2022-11-17T13:46:52,575 !! 2022-11-17T13:46:52,575 check.warn(importable) 2022-11-17T13:46:52,576 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.measurements' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,576 !! 2022-11-17T13:46:52,577 ############################ 2022-11-17T13:46:52,577 # Package would be ignored # 2022-11-17T13:46:52,577 ############################ 2022-11-17T13:46:52,578 Python recognizes 'atlas_densities.app.data.measurements' as an importable package, 2022-11-17T13:46:52,578 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,579 'atlas_densities.app.data.measurements' has been automatically added to the distribution only 2022-11-17T13:46:52,579 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,579 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,580 Please make sure that 'atlas_densities.app.data.measurements' is included as a package by using 2022-11-17T13:46:52,580 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,580 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,581 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,581 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,581 documentation page. 2022-11-17T13:46:52,582 !! 2022-11-17T13:46:52,583 check.warn(importable) 2022-11-17T13:46:52,583 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.metadata' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,583 !! 2022-11-17T13:46:52,584 ############################ 2022-11-17T13:46:52,585 # Package would be ignored # 2022-11-17T13:46:52,585 ############################ 2022-11-17T13:46:52,585 Python recognizes 'atlas_densities.app.data.metadata' as an importable package, 2022-11-17T13:46:52,585 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,586 'atlas_densities.app.data.metadata' has been automatically added to the distribution only 2022-11-17T13:46:52,586 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,587 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,587 Please make sure that 'atlas_densities.app.data.metadata' is included as a package by using 2022-11-17T13:46:52,587 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,588 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,588 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,588 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,589 documentation page. 2022-11-17T13:46:52,590 !! 2022-11-17T13:46:52,590 check.warn(importable) 2022-11-17T13:46:52,591 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,591 !! 2022-11-17T13:46:52,592 ############################ 2022-11-17T13:46:52,592 # Package would be ignored # 2022-11-17T13:46:52,592 ############################ 2022-11-17T13:46:52,593 Python recognizes 'atlas_densities.app.data.mtypes' as an importable package, 2022-11-17T13:46:52,593 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,593 'atlas_densities.app.data.mtypes' has been automatically added to the distribution only 2022-11-17T13:46:52,594 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,594 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,595 Please make sure that 'atlas_densities.app.data.mtypes' is included as a package by using 2022-11-17T13:46:52,595 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,595 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,595 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,596 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,596 documentation page. 2022-11-17T13:46:52,597 !! 2022-11-17T13:46:52,598 check.warn(importable) 2022-11-17T13:46:52,598 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.composition' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,598 !! 2022-11-17T13:46:52,599 ############################ 2022-11-17T13:46:52,599 # Package would be ignored # 2022-11-17T13:46:52,600 ############################ 2022-11-17T13:46:52,600 Python recognizes 'atlas_densities.app.data.mtypes.composition' as an importable package, 2022-11-17T13:46:52,600 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,601 'atlas_densities.app.data.mtypes.composition' has been automatically added to the distribution only 2022-11-17T13:46:52,601 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,601 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,602 Please make sure that 'atlas_densities.app.data.mtypes.composition' is included as a package by using 2022-11-17T13:46:52,602 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,602 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,603 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,603 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,604 documentation page. 2022-11-17T13:46:52,604 !! 2022-11-17T13:46:52,605 check.warn(importable) 2022-11-17T13:46:52,605 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.density_profiles' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,606 !! 2022-11-17T13:46:52,606 ############################ 2022-11-17T13:46:52,607 # Package would be ignored # 2022-11-17T13:46:52,607 ############################ 2022-11-17T13:46:52,607 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles' as an importable package, 2022-11-17T13:46:52,607 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,608 'atlas_densities.app.data.mtypes.density_profiles' has been automatically added to the distribution only 2022-11-17T13:46:52,609 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,609 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,610 Please make sure that 'atlas_densities.app.data.mtypes.density_profiles' is included as a package by using 2022-11-17T13:46:52,610 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,611 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,611 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,612 documentation page. 2022-11-17T13:46:52,613 !! 2022-11-17T13:46:52,613 check.warn(importable) 2022-11-17T13:46:52,613 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.density_profiles.meta' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,614 !! 2022-11-17T13:46:52,615 ############################ 2022-11-17T13:46:52,615 # Package would be ignored # 2022-11-17T13:46:52,615 ############################ 2022-11-17T13:46:52,615 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.meta' as an importable package, 2022-11-17T13:46:52,616 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,616 'atlas_densities.app.data.mtypes.density_profiles.meta' has been automatically added to the distribution only 2022-11-17T13:46:52,617 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,617 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,617 Please make sure that 'atlas_densities.app.data.mtypes.density_profiles.meta' is included as a package by using 2022-11-17T13:46:52,618 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,618 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,620 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,625 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,628 documentation page. 2022-11-17T13:46:52,633 !! 2022-11-17T13:46:52,634 check.warn(importable) 2022-11-17T13:46:52,634 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.density_profiles.profiles' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,635 !! 2022-11-17T13:46:52,636 ############################ 2022-11-17T13:46:52,636 # Package would be ignored # 2022-11-17T13:46:52,636 ############################ 2022-11-17T13:46:52,638 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.profiles' as an importable package, 2022-11-17T13:46:52,638 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,642 'atlas_densities.app.data.mtypes.density_profiles.profiles' has been automatically added to the distribution only 2022-11-17T13:46:52,642 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,643 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,644 Please make sure that 'atlas_densities.app.data.mtypes.density_profiles.profiles' is included as a package by using 2022-11-17T13:46:52,644 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,644 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,644 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,645 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,646 documentation page. 2022-11-17T13:46:52,647 !! 2022-11-17T13:46:52,648 check.warn(importable) 2022-11-17T13:46:52,648 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.probability_map' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,649 !! 2022-11-17T13:46:52,650 ############################ 2022-11-17T13:46:52,650 # Package would be ignored # 2022-11-17T13:46:52,651 ############################ 2022-11-17T13:46:52,651 Python recognizes 'atlas_densities.app.data.mtypes.probability_map' as an importable package, 2022-11-17T13:46:52,651 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,652 'atlas_densities.app.data.mtypes.probability_map' has been automatically added to the distribution only 2022-11-17T13:46:52,653 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,653 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,654 Please make sure that 'atlas_densities.app.data.mtypes.probability_map' is included as a package by using 2022-11-17T13:46:52,654 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,655 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,655 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,656 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,656 documentation page. 2022-11-17T13:46:52,657 !! 2022-11-17T13:46:52,658 check.warn(importable) 2022-11-17T13:46:52,659 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tests.densities.data.meta' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,659 !! 2022-11-17T13:46:52,660 ############################ 2022-11-17T13:46:52,661 # Package would be ignored # 2022-11-17T13:46:52,661 ############################ 2022-11-17T13:46:52,661 Python recognizes 'tests.densities.data.meta' as an importable package, 2022-11-17T13:46:52,662 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,663 'tests.densities.data.meta' has been automatically added to the distribution only 2022-11-17T13:46:52,663 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,664 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,664 Please make sure that 'tests.densities.data.meta' is included as a package by using 2022-11-17T13:46:52,665 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,665 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,666 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,666 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,667 documentation page. 2022-11-17T13:46:52,668 !! 2022-11-17T13:46:52,669 check.warn(importable) 2022-11-17T13:46:52,669 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tests.densities.data.mtypes' as data is deprecated, please list it in `packages`. 2022-11-17T13:46:52,670 !! 2022-11-17T13:46:52,671 ############################ 2022-11-17T13:46:52,671 # Package would be ignored # 2022-11-17T13:46:52,672 ############################ 2022-11-17T13:46:52,672 Python recognizes 'tests.densities.data.mtypes' as an importable package, 2022-11-17T13:46:52,673 but it is not listed in the `packages` configuration of setuptools. 2022-11-17T13:46:52,673 'tests.densities.data.mtypes' has been automatically added to the distribution only 2022-11-17T13:46:52,674 because it may contain data files, but this behavior is likely to change 2022-11-17T13:46:52,674 in future versions of setuptools (and therefore is considered deprecated). 2022-11-17T13:46:52,675 Please make sure that 'tests.densities.data.mtypes' is included as a package by using 2022-11-17T13:46:52,675 the `packages` configuration field or the proper discovery methods 2022-11-17T13:46:52,676 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-17T13:46:52,676 instead of `find_packages(...)`/`find:`). 2022-11-17T13:46:52,677 You can read more about "package discovery" and "data files" on setuptools 2022-11-17T13:46:52,677 documentation page. 2022-11-17T13:46:52,678 !! 2022-11-17T13:46:52,679 check.warn(importable) 2022-11-17T13:46:52,680 copying tests/1.json -> build/lib/tests 2022-11-17T13:46:52,680 copying tests/markers_config.yaml -> build/lib/tests 2022-11-17T13:46:52,681 creating build/lib/tests/densities/data 2022-11-17T13:46:52,681 creating build/lib/tests/densities/data/meta 2022-11-17T13:46:52,681 copying tests/densities/data/meta/layers.tsv -> build/lib/tests/densities/data/meta 2022-11-17T13:46:52,682 copying tests/densities/data/meta/mapping.tsv -> build/lib/tests/densities/data/meta 2022-11-17T13:46:52,682 copying tests/densities/data/meta/mapping_exc_only.tsv -> build/lib/tests/densities/data/meta 2022-11-17T13:46:52,683 creating build/lib/tests/densities/data/mtypes 2022-11-17T13:46:52,683 copying tests/densities/data/mtypes/BP.dat -> build/lib/tests/densities/data/mtypes 2022-11-17T13:46:52,683 copying tests/densities/data/mtypes/L2_IPC.dat -> build/lib/tests/densities/data/mtypes 2022-11-17T13:46:52,684 copying tests/densities/data/mtypes/L2_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2022-11-17T13:46:52,684 copying tests/densities/data/mtypes/L3_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2022-11-17T13:46:52,685 copying tests/densities/data/mtypes/L3_TPC-B.dat -> build/lib/tests/densities/data/mtypes 2022-11-17T13:46:52,688 copying tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/lib/tests/densities/data/mtypes 2022-11-17T13:46:52,692 copying atlas_densities/app/data/1.json -> build/lib/atlas_densities/app/data 2022-11-17T13:46:52,727 creating build/lib/atlas_densities/app/data/markers 2022-11-17T13:46:52,729 copying atlas_densities/app/data/markers/README.rst -> build/lib/atlas_densities/app/data/markers 2022-11-17T13:46:52,734 copying atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2022-11-17T13:46:52,738 copying atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2022-11-17T13:46:52,742 copying atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/lib/atlas_densities/app/data/markers 2022-11-17T13:46:52,746 copying atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/lib/atlas_densities/app/data/markers 2022-11-17T13:46:52,750 creating build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,752 copying atlas_densities/app/data/measurements/._std_cells.json -> build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,756 copying atlas_densities/app/data/measurements/README.rst -> build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,760 copying atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,767 copying atlas_densities/app/data/measurements/homogenous_regions.csv -> build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,772 copying atlas_densities/app/data/measurements/measurements.csv -> build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,820 copying atlas_densities/app/data/measurements/mmc1.xlsx -> build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,842 copying atlas_densities/app/data/measurements/mmc3.xlsx -> build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,861 copying atlas_densities/app/data/measurements/non_density_measurements.csv -> build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,866 copying atlas_densities/app/data/measurements/std_cells.json -> build/lib/atlas_densities/app/data/measurements 2022-11-17T13:46:52,880 creating build/lib/atlas_densities/app/data/metadata 2022-11-17T13:46:52,882 copying atlas_densities/app/data/metadata/ca1_metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-11-17T13:46:52,886 copying atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/lib/atlas_densities/app/data/metadata 2022-11-17T13:46:52,890 copying atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-11-17T13:46:52,894 copying atlas_densities/app/data/metadata/isocortex_metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-11-17T13:46:52,897 copying atlas_densities/app/data/metadata/metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-11-17T13:46:52,901 copying atlas_densities/app/data/metadata/thalamus_metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-11-17T13:46:52,905 creating build/lib/atlas_densities/app/data/mtypes 2022-11-17T13:46:52,906 copying atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/lib/atlas_densities/app/data/mtypes 2022-11-17T13:46:52,910 copying atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/lib/atlas_densities/app/data/mtypes 2022-11-17T13:46:52,914 creating build/lib/atlas_densities/app/data/mtypes/composition 2022-11-17T13:46:52,915 copying atlas_densities/app/data/mtypes/composition/README.rst -> build/lib/atlas_densities/app/data/mtypes/composition 2022-11-17T13:46:52,919 copying atlas_densities/app/data/mtypes/composition/composition.yaml -> build/lib/atlas_densities/app/data/mtypes/composition 2022-11-17T13:46:52,924 copying atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/lib/atlas_densities/app/data/mtypes/composition 2022-11-17T13:46:52,928 creating build/lib/atlas_densities/app/data/mtypes/density_profiles 2022-11-17T13:46:52,929 copying atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/lib/atlas_densities/app/data/mtypes/density_profiles 2022-11-17T13:46:52,934 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2022-11-17T13:46:52,935 copying atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2022-11-17T13:46:52,939 copying atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2022-11-17T13:46:52,943 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,945 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,949 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,953 copying atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,957 copying atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,963 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,967 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,971 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,975 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,978 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,983 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,986 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,990 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,994 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:52,998 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,003 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,013 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,017 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,021 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,026 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,030 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,035 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,039 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,043 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,048 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,053 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,057 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,062 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,067 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,071 copying atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,076 copying atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,081 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,085 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,090 copying atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,094 creating build/lib/atlas_densities/app/data/mtypes/probability_map 2022-11-17T13:46:53,095 copying atlas_densities/app/data/mtypes/probability_map/README.rst -> build/lib/atlas_densities/app/data/mtypes/probability_map 2022-11-17T13:46:53,099 copying atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/lib/atlas_densities/app/data/mtypes/probability_map 2022-11-17T13:46:53,200 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-17T13:46:53,201 setuptools.SetuptoolsDeprecationWarning, 2022-11-17T13:46:53,273 installing to build/bdist.linux-armv7l/wheel 2022-11-17T13:46:53,273 running install 2022-11-17T13:46:53,337 running install_lib 2022-11-17T13:46:53,412 creating build/bdist.linux-armv7l 2022-11-17T13:46:53,413 creating build/bdist.linux-armv7l/wheel 2022-11-17T13:46:53,416 creating build/bdist.linux-armv7l/wheel/tests 2022-11-17T13:46:53,418 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-17T13:46:53,422 copying build/lib/tests/mocking_tools.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-17T13:46:53,425 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-17T13:46:53,429 copying build/lib/tests/1.json -> build/bdist.linux-armv7l/wheel/tests 2022-11-17T13:46:53,467 creating build/bdist.linux-armv7l/wheel/tests/app 2022-11-17T13:46:53,468 copying build/lib/tests/app/__init__.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-11-17T13:46:53,471 copying build/lib/tests/app/test_refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-11-17T13:46:53,475 copying build/lib/tests/app/test_combination.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-11-17T13:46:53,478 copying build/lib/tests/app/test_cell_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-11-17T13:46:53,483 copying build/lib/tests/app/test_mtype_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-11-17T13:46:53,489 creating build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,491 copying build/lib/tests/densities/__init__.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,493 copying build/lib/tests/densities/test_measurement_to_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,498 copying build/lib/tests/densities/test_utils.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,502 copying build/lib/tests/densities/test_glia_densities.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,507 creating build/bdist.linux-armv7l/wheel/tests/densities/data 2022-11-17T13:46:53,509 creating build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2022-11-17T13:46:53,511 copying build/lib/tests/densities/data/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2022-11-17T13:46:53,515 copying build/lib/tests/densities/data/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2022-11-17T13:46:53,518 copying build/lib/tests/densities/data/meta/mapping_exc_only.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2022-11-17T13:46:53,522 creating build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-11-17T13:46:53,524 copying build/lib/tests/densities/data/mtypes/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-11-17T13:46:53,527 copying build/lib/tests/densities/data/mtypes/BP.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-11-17T13:46:53,530 copying build/lib/tests/densities/data/mtypes/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-11-17T13:46:53,534 copying build/lib/tests/densities/data/mtypes/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-11-17T13:46:53,537 copying build/lib/tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-11-17T13:46:53,540 copying build/lib/tests/densities/data/mtypes/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-11-17T13:46:53,544 copying build/lib/tests/densities/test_fitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,548 copying build/lib/tests/densities/test_inhibitory_neuron_density_optimization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,553 copying build/lib/tests/densities/test_refined_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,557 copying build/lib/tests/densities/test_excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,561 copying build/lib/tests/densities/test_cell_counts.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,565 copying build/lib/tests/densities/test_mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,568 copying build/lib/tests/densities/test_optimization_initialization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,573 copying build/lib/tests/densities/test_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,577 copying build/lib/tests/densities/test_cell_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,580 copying build/lib/tests/densities/test_mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,585 copying build/lib/tests/densities/test_mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,589 copying build/lib/tests/densities/test_excel_reader.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,593 copying build/lib/tests/densities/test_inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-11-17T13:46:53,597 copying build/lib/tests/markers_config.yaml -> build/bdist.linux-armv7l/wheel/tests 2022-11-17T13:46:53,601 creating build/bdist.linux-armv7l/wheel/tests/combination 2022-11-17T13:46:53,603 copying build/lib/tests/combination/test_annotations_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2022-11-17T13:46:53,607 copying build/lib/tests/combination/__init__.py -> build/bdist.linux-armv7l/wheel/tests/combination 2022-11-17T13:46:53,610 copying build/lib/tests/combination/test_markers_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2022-11-17T13:46:53,615 creating build/bdist.linux-armv7l/wheel/atlas_densities 2022-11-17T13:46:53,616 copying build/lib/atlas_densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2022-11-17T13:46:53,620 copying build/lib/atlas_densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2022-11-17T13:46:53,625 creating build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-11-17T13:46:53,626 copying build/lib/atlas_densities/app/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-11-17T13:46:53,630 copying build/lib/atlas_densities/app/cell_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-11-17T13:46:53,638 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2022-11-17T13:46:53,639 copying build/lib/atlas_densities/app/data/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2022-11-17T13:46:53,642 copying build/lib/atlas_densities/app/data/1.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2022-11-17T13:46:53,685 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-11-17T13:46:53,686 copying build/lib/atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-11-17T13:46:53,690 copying build/lib/atlas_densities/app/data/markers/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-11-17T13:46:53,694 copying build/lib/atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-11-17T13:46:53,697 copying build/lib/atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-11-17T13:46:53,700 copying build/lib/atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-11-17T13:46:53,704 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,705 copying build/lib/atlas_densities/app/data/measurements/non_density_measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,710 copying build/lib/atlas_densities/app/data/measurements/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,714 copying build/lib/atlas_densities/app/data/measurements/mmc1.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,734 copying build/lib/atlas_densities/app/data/measurements/mmc3.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,754 copying build/lib/atlas_densities/app/data/measurements/homogenous_regions.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,757 copying build/lib/atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,765 copying build/lib/atlas_densities/app/data/measurements/._std_cells.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,768 copying build/lib/atlas_densities/app/data/measurements/measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,816 copying build/lib/atlas_densities/app/data/measurements/std_cells.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-11-17T13:46:53,831 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-11-17T13:46:53,832 copying build/lib/atlas_densities/app/data/metadata/thalamus_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-11-17T13:46:53,836 copying build/lib/atlas_densities/app/data/metadata/metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-11-17T13:46:53,839 copying build/lib/atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-11-17T13:46:53,842 copying build/lib/atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-11-17T13:46:53,846 copying build/lib/atlas_densities/app/data/metadata/isocortex_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-11-17T13:46:53,849 copying build/lib/atlas_densities/app/data/metadata/ca1_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-11-17T13:46:53,853 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2022-11-17T13:46:53,855 copying build/lib/atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2022-11-17T13:46:53,859 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2022-11-17T13:46:53,861 copying build/lib/atlas_densities/app/data/mtypes/composition/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2022-11-17T13:46:53,864 copying build/lib/atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2022-11-17T13:46:53,868 copying build/lib/atlas_densities/app/data/mtypes/composition/composition.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2022-11-17T13:46:53,872 copying build/lib/atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2022-11-17T13:46:53,877 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2022-11-17T13:46:53,878 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2022-11-17T13:46:53,883 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2022-11-17T13:46:53,885 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2022-11-17T13:46:53,888 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2022-11-17T13:46:53,894 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,895 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,899 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,902 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,906 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,909 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,912 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,915 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,919 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,922 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,925 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,929 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,932 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,935 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,939 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,942 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,946 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,949 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,952 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,955 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,959 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,962 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,966 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,969 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,972 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,975 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,979 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,982 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,985 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,989 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,992 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,995 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:53,998 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:54,001 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-11-17T13:46:54,006 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2022-11-17T13:46:54,007 copying build/lib/atlas_densities/app/data/mtypes/probability_map/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2022-11-17T13:46:54,011 copying build/lib/atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2022-11-17T13:46:54,015 copying build/lib/atlas_densities/app/mtype_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-11-17T13:46:54,020 copying build/lib/atlas_densities/app/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-11-17T13:46:54,023 copying build/lib/atlas_densities/app/cli.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-11-17T13:46:54,027 copying build/lib/atlas_densities/app/combination.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-11-17T13:46:54,030 copying build/lib/atlas_densities/exceptions.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2022-11-17T13:46:54,034 copying build/lib/atlas_densities/version.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2022-11-17T13:46:54,038 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,039 copying build/lib/atlas_densities/densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,043 copying build/lib/atlas_densities/densities/fitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,047 copying build/lib/atlas_densities/densities/inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,052 copying build/lib/atlas_densities/densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,057 copying build/lib/atlas_densities/densities/mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,061 copying build/lib/atlas_densities/densities/cell_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,065 copying build/lib/atlas_densities/densities/cell_counts.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,069 copying build/lib/atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,073 copying build/lib/atlas_densities/densities/mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,078 copying build/lib/atlas_densities/densities/glia_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,083 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,089 copying build/lib/atlas_densities/densities/excel_reader.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,095 copying build/lib/atlas_densities/densities/mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,098 copying build/lib/atlas_densities/densities/measurement_to_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,103 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,107 copying build/lib/atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-11-17T13:46:54,113 creating build/bdist.linux-armv7l/wheel/atlas_densities/combination 2022-11-17T13:46:54,114 copying build/lib/atlas_densities/combination/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2022-11-17T13:46:54,117 copying build/lib/atlas_densities/combination/annotations_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2022-11-17T13:46:54,121 copying build/lib/atlas_densities/combination/markers_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2022-11-17T13:46:54,124 running install_egg_info 2022-11-17T13:46:54,199 Copying atlas_densities.egg-info to build/bdist.linux-armv7l/wheel/atlas_densities-0.1.3-py3.7.egg-info 2022-11-17T13:46:54,223 running install_scripts 2022-11-17T13:46:54,407 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-11-17T13:46:54,409 adding license file "AUTHORS.txt" (matched pattern "AUTHORS*") 2022-11-17T13:46:54,419 creating build/bdist.linux-armv7l/wheel/atlas_densities-0.1.3.dist-info/WHEEL 2022-11-17T13:46:54,424 creating '/tmp/pip-wheel-rldhvub8/atlas_densities-0.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-17T13:46:54,429 adding 'atlas_densities/__init__.py' 2022-11-17T13:46:54,432 adding 'atlas_densities/exceptions.py' 2022-11-17T13:46:54,436 adding 'atlas_densities/utils.py' 2022-11-17T13:46:54,438 adding 'atlas_densities/version.py' 2022-11-17T13:46:54,441 adding 'atlas_densities/app/__init__.py' 2022-11-17T13:46:54,453 adding 'atlas_densities/app/cell_densities.py' 2022-11-17T13:46:54,456 adding 'atlas_densities/app/cli.py' 2022-11-17T13:46:54,459 adding 'atlas_densities/app/combination.py' 2022-11-17T13:46:54,465 adding 'atlas_densities/app/mtype_densities.py' 2022-11-17T13:46:54,467 adding 'atlas_densities/app/utils.py' 2022-11-17T13:46:54,539 adding 'atlas_densities/app/data/1.json' 2022-11-17T13:46:54,553 adding 'atlas_densities/app/data/__init__.py' 2022-11-17T13:46:54,557 adding 'atlas_densities/app/data/markers/README.rst' 2022-11-17T13:46:54,560 adding 'atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml' 2022-11-17T13:46:54,562 adding 'atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml' 2022-11-17T13:46:54,565 adding 'atlas_densities/app/data/markers/realigned_slices_bbp.json' 2022-11-17T13:46:54,568 adding 'atlas_densities/app/data/markers/realigned_slices_ccfv2.json' 2022-11-17T13:46:54,571 adding 'atlas_densities/app/data/measurements/._std_cells.json' 2022-11-17T13:46:54,574 adding 'atlas_densities/app/data/measurements/README.rst' 2022-11-17T13:46:54,589 adding 'atlas_densities/app/data/measurements/gaba_papers.xlsx' 2022-11-17T13:46:54,593 adding 'atlas_densities/app/data/measurements/homogenous_regions.csv' 2022-11-17T13:46:54,695 adding 'atlas_densities/app/data/measurements/measurements.csv' 2022-11-17T13:46:54,818 adding 'atlas_densities/app/data/measurements/mmc1.xlsx' 2022-11-17T13:46:54,913 adding 'atlas_densities/app/data/measurements/mmc3.xlsx' 2022-11-17T13:46:54,922 adding 'atlas_densities/app/data/measurements/non_density_measurements.csv' 2022-11-17T13:46:54,955 adding 'atlas_densities/app/data/measurements/std_cells.json' 2022-11-17T13:46:54,962 adding 'atlas_densities/app/data/metadata/ca1_metadata.json' 2022-11-17T13:46:54,965 adding 'atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json' 2022-11-17T13:46:54,967 adding 'atlas_densities/app/data/metadata/isocortex_23_metadata.json' 2022-11-17T13:46:54,969 adding 'atlas_densities/app/data/metadata/isocortex_metadata.json' 2022-11-17T13:46:54,971 adding 'atlas_densities/app/data/metadata/metadata.json' 2022-11-17T13:46:54,973 adding 'atlas_densities/app/data/metadata/thalamus_metadata.json' 2022-11-17T13:46:54,977 adding 'atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv' 2022-11-17T13:46:54,979 adding 'atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml' 2022-11-17T13:46:54,982 adding 'atlas_densities/app/data/mtypes/composition/README.rst' 2022-11-17T13:46:54,985 adding 'atlas_densities/app/data/mtypes/composition/composition.yaml' 2022-11-17T13:46:54,988 adding 'atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv' 2022-11-17T13:46:54,991 adding 'atlas_densities/app/data/mtypes/density_profiles/README.rst' 2022-11-17T13:46:54,994 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv' 2022-11-17T13:46:54,997 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv' 2022-11-17T13:46:55,001 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat' 2022-11-17T13:46:55,003 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat' 2022-11-17T13:46:55,006 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat' 2022-11-17T13:46:55,008 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat' 2022-11-17T13:46:55,010 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat' 2022-11-17T13:46:55,012 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat' 2022-11-17T13:46:55,014 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat' 2022-11-17T13:46:55,016 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat' 2022-11-17T13:46:55,018 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat' 2022-11-17T13:46:55,020 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat' 2022-11-17T13:46:55,023 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat' 2022-11-17T13:46:55,025 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat' 2022-11-17T13:46:55,027 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat' 2022-11-17T13:46:55,029 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat' 2022-11-17T13:46:55,031 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat' 2022-11-17T13:46:55,033 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat' 2022-11-17T13:46:55,035 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat' 2022-11-17T13:46:55,037 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat' 2022-11-17T13:46:55,039 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat' 2022-11-17T13:46:55,041 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat' 2022-11-17T13:46:55,043 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat' 2022-11-17T13:46:55,045 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat' 2022-11-17T13:46:55,047 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat' 2022-11-17T13:46:55,050 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat' 2022-11-17T13:46:55,052 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat' 2022-11-17T13:46:55,054 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat' 2022-11-17T13:46:55,056 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat' 2022-11-17T13:46:55,058 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat' 2022-11-17T13:46:55,060 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat' 2022-11-17T13:46:55,062 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat' 2022-11-17T13:46:55,064 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat' 2022-11-17T13:46:55,067 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat' 2022-11-17T13:46:55,069 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat' 2022-11-17T13:46:55,072 adding 'atlas_densities/app/data/mtypes/probability_map/README.rst' 2022-11-17T13:46:55,077 adding 'atlas_densities/app/data/mtypes/probability_map/probability_map.csv' 2022-11-17T13:46:55,081 adding 'atlas_densities/combination/__init__.py' 2022-11-17T13:46:55,084 adding 'atlas_densities/combination/annotations_combinator.py' 2022-11-17T13:46:55,087 adding 'atlas_densities/combination/markers_combinator.py' 2022-11-17T13:46:55,091 adding 'atlas_densities/densities/__init__.py' 2022-11-17T13:46:55,095 adding 'atlas_densities/densities/cell_counts.py' 2022-11-17T13:46:55,098 adding 'atlas_densities/densities/cell_density.py' 2022-11-17T13:46:55,105 adding 'atlas_densities/densities/excel_reader.py' 2022-11-17T13:46:55,108 adding 'atlas_densities/densities/excitatory_inhibitory_splitting.py' 2022-11-17T13:46:55,116 adding 'atlas_densities/densities/fitting.py' 2022-11-17T13:46:55,120 adding 'atlas_densities/densities/glia_densities.py' 2022-11-17T13:46:55,123 adding 'atlas_densities/densities/inhibitory_neuron_densities_helper.py' 2022-11-17T13:46:55,133 adding 'atlas_densities/densities/inhibitory_neuron_densities_optimization.py' 2022-11-17T13:46:55,137 adding 'atlas_densities/densities/inhibitory_neuron_density.py' 2022-11-17T13:46:55,142 adding 'atlas_densities/densities/measurement_to_density.py' 2022-11-17T13:46:55,145 adding 'atlas_densities/densities/mtype_densities_from_composition.py' 2022-11-17T13:46:55,149 adding 'atlas_densities/densities/mtype_densities_from_map.py' 2022-11-17T13:46:55,155 adding 'atlas_densities/densities/mtype_densities_from_profiles.py' 2022-11-17T13:46:55,162 adding 'atlas_densities/densities/refined_inhibitory_neuron_densities.py' 2022-11-17T13:46:55,170 adding 'atlas_densities/densities/utils.py' 2022-11-17T13:46:55,244 adding 'tests/1.json' 2022-11-17T13:46:55,259 adding 'tests/__init__.py' 2022-11-17T13:46:55,261 adding 'tests/markers_config.yaml' 2022-11-17T13:46:55,264 adding 'tests/mocking_tools.py' 2022-11-17T13:46:55,267 adding 'tests/test_utils.py' 2022-11-17T13:46:55,270 adding 'tests/app/__init__.py' 2022-11-17T13:46:55,274 adding 'tests/app/test_cell_densities.py' 2022-11-17T13:46:55,277 adding 'tests/app/test_combination.py' 2022-11-17T13:46:55,282 adding 'tests/app/test_mtype_densities.py' 2022-11-17T13:46:55,285 adding 'tests/app/test_refined_inhibitory_neuron_densities.py' 2022-11-17T13:46:55,288 adding 'tests/combination/__init__.py' 2022-11-17T13:46:55,291 adding 'tests/combination/test_annotations_combinator.py' 2022-11-17T13:46:55,294 adding 'tests/combination/test_markers_combinator.py' 2022-11-17T13:46:55,298 adding 'tests/densities/__init__.py' 2022-11-17T13:46:55,300 adding 'tests/densities/test_cell_counts.py' 2022-11-17T13:46:55,303 adding 'tests/densities/test_cell_density.py' 2022-11-17T13:46:55,307 adding 'tests/densities/test_excel_reader.py' 2022-11-17T13:46:55,311 adding 'tests/densities/test_excitatory_inhibitory_splitting.py' 2022-11-17T13:46:55,317 adding 'tests/densities/test_fitting.py' 2022-11-17T13:46:55,320 adding 'tests/densities/test_glia_densities.py' 2022-11-17T13:46:55,323 adding 'tests/densities/test_inhibitory_neuron_densities_helper.py' 2022-11-17T13:46:55,326 adding 'tests/densities/test_inhibitory_neuron_density.py' 2022-11-17T13:46:55,330 adding 'tests/densities/test_inhibitory_neuron_density_optimization.py' 2022-11-17T13:46:55,334 adding 'tests/densities/test_measurement_to_density.py' 2022-11-17T13:46:55,337 adding 'tests/densities/test_mtype_densities_from_composition.py' 2022-11-17T13:46:55,340 adding 'tests/densities/test_mtype_densities_from_map.py' 2022-11-17T13:46:55,344 adding 'tests/densities/test_mtype_densities_from_profiles.py' 2022-11-17T13:46:55,349 adding 'tests/densities/test_optimization_initialization.py' 2022-11-17T13:46:55,353 adding 'tests/densities/test_refined_inhibitory_neuron_density.py' 2022-11-17T13:46:55,357 adding 'tests/densities/test_utils.py' 2022-11-17T13:46:55,362 adding 'tests/densities/data/meta/layers.tsv' 2022-11-17T13:46:55,364 adding 'tests/densities/data/meta/mapping.tsv' 2022-11-17T13:46:55,366 adding 'tests/densities/data/meta/mapping_exc_only.tsv' 2022-11-17T13:46:55,370 adding 'tests/densities/data/mtypes/BP.dat' 2022-11-17T13:46:55,372 adding 'tests/densities/data/mtypes/L2_IPC.dat' 2022-11-17T13:46:55,374 adding 'tests/densities/data/mtypes/L2_TPC-A.dat' 2022-11-17T13:46:55,376 adding 'tests/densities/data/mtypes/L3_TPC-A.dat' 2022-11-17T13:46:55,378 adding 'tests/densities/data/mtypes/L3_TPC-B.dat' 2022-11-17T13:46:55,380 adding 'tests/densities/data/mtypes/mtype-taxonomy.tsv' 2022-11-17T13:46:55,382 adding 'atlas_densities-0.1.3.dist-info/AUTHORS.txt' 2022-11-17T13:46:55,386 adding 'atlas_densities-0.1.3.dist-info/LICENSE.txt' 2022-11-17T13:46:55,391 adding 'atlas_densities-0.1.3.dist-info/METADATA' 2022-11-17T13:46:55,394 adding 'atlas_densities-0.1.3.dist-info/WHEEL' 2022-11-17T13:46:55,395 adding 'atlas_densities-0.1.3.dist-info/entry_points.txt' 2022-11-17T13:46:55,397 adding 'atlas_densities-0.1.3.dist-info/top_level.txt' 2022-11-17T13:46:55,403 adding 'atlas_densities-0.1.3.dist-info/RECORD' 2022-11-17T13:46:55,451 removing build/bdist.linux-armv7l/wheel 2022-11-17T13:46:55,807 Building wheel for atlas-densities (setup.py): finished with status 'done' 2022-11-17T13:46:55,876 Created wheel for atlas-densities: filename=atlas_densities-0.1.3-py3-none-any.whl size=1054818 sha256=e570061be8379bb89033a1cbbb97eb0754c41fe0214fa16447a01c7ec91a1a9f 2022-11-17T13:46:55,878 Stored in directory: /tmp/pip-ephem-wheel-cache-ump_fa0x/wheels/a7/fc/61/8d4583cc27f57b6ac745ccf27b6d2e084fa5843558260b26f9 2022-11-17T13:46:55,922 Successfully built atlas-densities 2022-11-17T13:46:56,011 Removed build tracker: '/tmp/pip-build-tracker-8o367l71'