2022-11-18T16:32:58,401 Created temporary directory: /tmp/pip-ephem-wheel-cache-t06exshx 2022-11-18T16:32:58,405 Created temporary directory: /tmp/pip-build-tracker-z5kg1e5l 2022-11-18T16:32:58,406 Initialized build tracking at /tmp/pip-build-tracker-z5kg1e5l 2022-11-18T16:32:58,406 Created build tracker: /tmp/pip-build-tracker-z5kg1e5l 2022-11-18T16:32:58,407 Entered build tracker: /tmp/pip-build-tracker-z5kg1e5l 2022-11-18T16:32:58,408 Created temporary directory: /tmp/pip-wheel-fm3n9a_n 2022-11-18T16:32:58,416 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-18T16:32:58,421 Created temporary directory: /tmp/pip-ephem-wheel-cache-uth8zdoh 2022-11-18T16:32:58,472 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-18T16:32:58,479 2 location(s) to search for versions of hca-ingest: 2022-11-18T16:32:58,479 * https://pypi.org/simple/hca-ingest/ 2022-11-18T16:32:58,479 * https://www.piwheels.org/simple/hca-ingest/ 2022-11-18T16:32:58,481 Fetching project page and analyzing links: https://pypi.org/simple/hca-ingest/ 2022-11-18T16:32:58,482 Getting page https://pypi.org/simple/hca-ingest/ 2022-11-18T16:32:58,485 Found index url https://pypi.org/simple 2022-11-18T16:32:58,673 Fetched page https://pypi.org/simple/hca-ingest/ as application/vnd.pypi.simple.v1+json 2022-11-18T16:32:58,690 Found link https://files.pythonhosted.org/packages/40/63/cd35e918909d6794645b3ed42242746abf8234ee9098032801b4a8696647/hca_ingest-0.1a0.tar.gz (from 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https://files.pythonhosted.org/packages/ea/f8/e853309bcea77de81c907a57a1d182fd63fe8988d36323e73f0beb74335d/hca-ingest-2.2.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.2.0 2022-11-18T16:32:58,709 Found link https://files.pythonhosted.org/packages/06/34/714bd7236a162de34b1e6425619dd1c0f5ebaaf3b47ea346154131f91f64/hca-ingest-2.3.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.3.0 2022-11-18T16:32:58,710 Found link https://files.pythonhosted.org/packages/10/94/bc2ac0c789c040d0dd27e3cdcac6be5c652cdb9d131663d859b0377240cd/hca-ingest-2.4.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.4.0 2022-11-18T16:32:58,711 Found link https://files.pythonhosted.org/packages/0b/0e/3d67ff3248cee1dc38c09d7b796de62a2087db5a7d8151a42ac2a16bcc4c/hca-ingest-2.4.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.4.1 2022-11-18T16:32:58,712 Found link https://files.pythonhosted.org/packages/cf/69/f435d36acdbd6a6a09bdb75e3c95a03529b2e63295e948ba2e8540f4e4b8/hca-ingest-2.5.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.5.0 2022-11-18T16:32:58,712 Found link https://files.pythonhosted.org/packages/50/25/30209a19a93fad1ea989e32b08fb16511370f592df05cb9a081b18713a93/hca-ingest-2.5.1.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.5.1 2022-11-18T16:32:58,713 Found link https://files.pythonhosted.org/packages/c0/6f/16c46bfc33e685c69be769239a1189c3e0604e6652a726be2616dcf16202/hca-ingest-2.5.2.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.5.2 2022-11-18T16:32:58,714 Found link https://files.pythonhosted.org/packages/26/bd/5966bcf7b5d54a5d90363b613b58878108affcb85d23f17163e1b507ce9e/hca-ingest-2.6.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.6.0 2022-11-18T16:32:58,715 Found link https://files.pythonhosted.org/packages/a5/97/7478625881120f6ecb80ff32e55147e6ed0561ee32d789fccf23892ee222/hca-ingest-2.7.0.tar.gz (from https://pypi.org/simple/hca-ingest/), version: 2.7.0 2022-11-18T16:32:58,715 Fetching project page and analyzing links: https://www.piwheels.org/simple/hca-ingest/ 2022-11-18T16:32:58,716 Getting page https://www.piwheels.org/simple/hca-ingest/ 2022-11-18T16:32:58,718 Found index url https://www.piwheels.org/simple 2022-11-18T16:32:58,954 Fetched page https://www.piwheels.org/simple/hca-ingest/ as text/html 2022-11-18T16:32:58,982 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-2.6.0-py3-none-any.whl#sha256=3c61f254c41cbcf0ba3a5f82a9d1700570a3808993d3d0efeb240b987846acab (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,983 Skipping link: No binaries permitted for hca-ingest: 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https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,985 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-2.3.0-py3-none-any.whl#sha256=103dcb3051e038eb4f1f2bc3f4529b1064eb56d9d7e9045982bb3ff6228dd98f (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,986 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-2.2.0-py3-none-any.whl#sha256=26ca7dbf6aa3199d143a88ccdaf6531f3c5f472aced275411c224afc9535dd49 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,986 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-2.1.0-py3-none-any.whl#sha256=aee8037737c977bc687a68e6978e44365027cf11f79e417f29313df74567b01d (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,987 Skipping link: No binaries permitted for hca-ingest: 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https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,989 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.12-py3-none-any.whl#sha256=b062dbbbcc37a8eccfd9787d5171ac2957a013a5c50854ee9f46483bc8ea41c4 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,990 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.11-py3-none-any.whl#sha256=fd20d11e11a4daaeefaa64a1aeebee37633057b5c4fb95cfabca028364a607d1 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,990 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.10-py3-none-any.whl#sha256=6cd93d7cb72e01b83c98aef05f8111fa1b7f77ca3842744a8f2a2683a67372ef (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,991 Skipping link: No binaries permitted for hca-ingest: 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https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,993 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.5-py3-none-any.whl#sha256=bff8bd53c6bc8db093541b995f4d68c4f8bbd2f0f7807e6d085a494ad3eb694d (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,994 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.4-py3-none-any.whl#sha256=0c0e8392f10639c420fe99860ce1f887e126cceb736f825c460bef5b0177d794 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,994 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.3-py3-none-any.whl#sha256=4a4e3a3736962adf29b2e8cc6c91653a59bd1905a7adba3e8ee8dc1ddcf8a938 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,995 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.2-py3-none-any.whl#sha256=e8644f48e1f25e56576aba61795619351fa2c70ec823aeeef366f8d095176fc3 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,995 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6.1-py3-none-any.whl#sha256=e7fe7a4ace5e875c4255093eb731e80f0016f5dfaba0c7f33004287c1d69217a (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,996 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.6-py3-none-any.whl#sha256=e81911e7b849f5653a6928790fd1c67620605f431583b58a048715a159847fc8 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,996 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.5.1-py3-none-any.whl#sha256=8d4457964d19276cb0bc0da4c45fa732dc6a5f2d3a3e177f3c4224efea4eec31 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,997 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.5-py3-none-any.whl#sha256=14a52ab3b55189ee2c1b7614e63431d4064329889aff5f3c4180f3630d1793c3 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,997 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.4-py3-none-any.whl#sha256=787d60683e649c0640bf74a4bd815b9c65b29bf2633bae4eda88dd911d21302a (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,998 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.3b0-py3-none-any.whl#sha256=8d4197cff39216ee46c8b1a81a0c5bd2abdca3bec0a246a899cdf98bcb4e1c2f (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,998 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.3a0-py3-none-any.whl#sha256=4fb9a524da075589f7558ffde7785146d3c40d4d3d60d562041dc5dca4d16875 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,999 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.1b0-py3-none-any.whl#sha256=86caf7d6ae3fd26aee7f1a1ae29bf2fae4b66916e7e0fd9eda35aa21805926b3 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:58,999 Skipping link: No binaries permitted for hca-ingest: https://www.piwheels.org/simple/hca-ingest/hca_ingest-0.1a0-py3-none-any.whl#sha256=7ba155e45589b5e7e4b67cc98a2ed75aa67938cd2c2b31d8f0eb7ecea769c7c4 (from https://www.piwheels.org/simple/hca-ingest/) 2022-11-18T16:32:59,000 Skipping link: not a file: https://www.piwheels.org/simple/hca-ingest/ 2022-11-18T16:32:59,001 Skipping link: not a file: https://pypi.org/simple/hca-ingest/ 2022-11-18T16:32:59,044 Given no hashes to check 1 links for project 'hca-ingest': discarding no candidates 2022-11-18T16:32:59,075 Collecting hca-ingest==2.7.0 2022-11-18T16:32:59,080 Created temporary directory: /tmp/pip-unpack-h_fwi5n8 2022-11-18T16:32:59,331 Downloading hca-ingest-2.7.0.tar.gz (57 kB) 2022-11-18T16:32:59,656 Added hca-ingest==2.7.0 from https://files.pythonhosted.org/packages/a5/97/7478625881120f6ecb80ff32e55147e6ed0561ee32d789fccf23892ee222/hca-ingest-2.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-z5kg1e5l' 2022-11-18T16:32:59,659 Running setup.py (path:/tmp/pip-wheel-fm3n9a_n/hca-ingest_953eeed581194ad199b2ad7b0391bcbd/setup.py) egg_info for package hca-ingest 2022-11-18T16:32:59,660 Created temporary directory: /tmp/pip-pip-egg-info-mb2h6486 2022-11-18T16:32:59,661 Preparing metadata (setup.py): started 2022-11-18T16:32:59,663 Running command python setup.py egg_info 2022-11-18T16:33:02,130 running egg_info 2022-11-18T16:33:02,135 creating /tmp/pip-pip-egg-info-mb2h6486/hca_ingest.egg-info 2022-11-18T16:33:02,197 writing /tmp/pip-pip-egg-info-mb2h6486/hca_ingest.egg-info/PKG-INFO 2022-11-18T16:33:02,201 writing dependency_links to /tmp/pip-pip-egg-info-mb2h6486/hca_ingest.egg-info/dependency_links.txt 2022-11-18T16:33:02,205 writing requirements to /tmp/pip-pip-egg-info-mb2h6486/hca_ingest.egg-info/requires.txt 2022-11-18T16:33:02,207 writing top-level names to /tmp/pip-pip-egg-info-mb2h6486/hca_ingest.egg-info/top_level.txt 2022-11-18T16:33:02,210 writing manifest file '/tmp/pip-pip-egg-info-mb2h6486/hca_ingest.egg-info/SOURCES.txt' 2022-11-18T16:33:02,412 reading manifest file '/tmp/pip-pip-egg-info-mb2h6486/hca_ingest.egg-info/SOURCES.txt' 2022-11-18T16:33:02,415 reading manifest template 'MANIFEST.in' 2022-11-18T16:33:02,417 adding license file 'LICENSE' 2022-11-18T16:33:02,426 writing manifest file '/tmp/pip-pip-egg-info-mb2h6486/hca_ingest.egg-info/SOURCES.txt' 2022-11-18T16:33:02,629 Preparing metadata (setup.py): finished with status 'done' 2022-11-18T16:33:02,643 Source in /tmp/pip-wheel-fm3n9a_n/hca-ingest_953eeed581194ad199b2ad7b0391bcbd has version 2.7.0, which satisfies requirement hca-ingest==2.7.0 from https://files.pythonhosted.org/packages/a5/97/7478625881120f6ecb80ff32e55147e6ed0561ee32d789fccf23892ee222/hca-ingest-2.7.0.tar.gz 2022-11-18T16:33:02,645 Removed hca-ingest==2.7.0 from https://files.pythonhosted.org/packages/a5/97/7478625881120f6ecb80ff32e55147e6ed0561ee32d789fccf23892ee222/hca-ingest-2.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-z5kg1e5l' 2022-11-18T16:33:02,656 Created temporary directory: /tmp/pip-unpack-vev7yi98 2022-11-18T16:33:02,657 Building wheels for collected packages: hca-ingest 2022-11-18T16:33:02,666 Created temporary directory: /tmp/pip-wheel-_4kzfkz6 2022-11-18T16:33:02,667 Building wheel for hca-ingest (setup.py): started 2022-11-18T16:33:02,669 Destination directory: /tmp/pip-wheel-_4kzfkz6 2022-11-18T16:33:02,669 Running command python setup.py bdist_wheel 2022-11-18T16:33:05,155 running bdist_wheel 2022-11-18T16:33:05,879 running build 2022-11-18T16:33:05,880 running build_py 2022-11-18T16:33:05,947 creating build 2022-11-18T16:33:05,947 creating build/lib 2022-11-18T16:33:05,948 creating build/lib/hca_ingest 2022-11-18T16:33:05,950 copying hca_ingest/__init__.py -> build/lib/hca_ingest 2022-11-18T16:33:05,955 creating build/lib/hca_ingest/downloader 2022-11-18T16:33:05,956 copying hca_ingest/downloader/__init__.py -> build/lib/hca_ingest/downloader 2022-11-18T16:33:05,959 copying hca_ingest/downloader/workbook.py -> build/lib/hca_ingest/downloader 2022-11-18T16:33:05,963 copying hca_ingest/downloader/data_collector.py -> build/lib/hca_ingest/downloader 2022-11-18T16:33:05,966 copying hca_ingest/downloader/entity.py -> build/lib/hca_ingest/downloader 2022-11-18T16:33:05,970 copying hca_ingest/downloader/flattener.py -> build/lib/hca_ingest/downloader 2022-11-18T16:33:05,974 copying hca_ingest/downloader/downloader.py -> build/lib/hca_ingest/downloader 2022-11-18T16:33:05,979 creating build/lib/hca_ingest/api 2022-11-18T16:33:05,980 copying hca_ingest/api/__init__.py -> build/lib/hca_ingest/api 2022-11-18T16:33:05,983 copying hca_ingest/api/ingestapi.py -> build/lib/hca_ingest/api 2022-11-18T16:33:05,988 copying hca_ingest/api/requests_utils.py -> build/lib/hca_ingest/api 2022-11-18T16:33:05,991 copying hca_ingest/api/stagingapi.py -> build/lib/hca_ingest/api 2022-11-18T16:33:05,998 creating build/lib/hca_ingest/utils 2022-11-18T16:33:05,999 copying hca_ingest/utils/token_manager.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,003 copying hca_ingest/utils/doctict.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,006 copying hca_ingest/utils/IngestError.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,009 copying hca_ingest/utils/validationreport.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,013 copying hca_ingest/utils/errorreport.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,016 copying hca_ingest/utils/generate_redaction_manifest.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,020 copying hca_ingest/utils/__init__.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,024 copying hca_ingest/utils/bundlevalidator.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,030 copying hca_ingest/utils/spreadsheet.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,034 copying hca_ingest/utils/date.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,037 copying hca_ingest/utils/s2s_token_client.py -> build/lib/hca_ingest/utils 2022-11-18T16:33:06,042 creating build/lib/hca_ingest/importer 2022-11-18T16:33:06,044 copying hca_ingest/importer/importer.py -> build/lib/hca_ingest/importer 2022-11-18T16:33:06,049 copying hca_ingest/importer/__init__.py -> build/lib/hca_ingest/importer 2022-11-18T16:33:06,052 copying hca_ingest/importer/data_node.py -> build/lib/hca_ingest/importer 2022-11-18T16:33:06,057 creating build/lib/hca_ingest/template 2022-11-18T16:33:06,059 copying hca_ingest/template/schema_template.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,064 copying hca_ingest/template/__init__.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,067 copying hca_ingest/template/schema_parser.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,072 copying hca_ingest/template/tab_config.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,076 copying hca_ingest/template/exceptions.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,080 copying hca_ingest/template/spreadsheet_builder.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,085 copying hca_ingest/template/migration_parser.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,089 copying hca_ingest/template/linked_spreadsheet_builder.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,095 copying hca_ingest/template/descriptor.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,099 copying hca_ingest/template/vanilla_spreadsheet_builder.py -> build/lib/hca_ingest/template 2022-11-18T16:33:06,106 creating build/lib/hca_ingest/importer/conversion 2022-11-18T16:33:06,109 copying hca_ingest/importer/conversion/metadata_entity.py -> build/lib/hca_ingest/importer/conversion 2022-11-18T16:33:06,113 copying hca_ingest/importer/conversion/__init__.py -> build/lib/hca_ingest/importer/conversion 2022-11-18T16:33:06,117 copying hca_ingest/importer/conversion/template_manager.py -> build/lib/hca_ingest/importer/conversion 2022-11-18T16:33:06,123 copying hca_ingest/importer/conversion/utils.py -> build/lib/hca_ingest/importer/conversion 2022-11-18T16:33:06,126 copying hca_ingest/importer/conversion/data_converter.py -> build/lib/hca_ingest/importer/conversion 2022-11-18T16:33:06,129 copying hca_ingest/importer/conversion/exceptions.py -> build/lib/hca_ingest/importer/conversion 2022-11-18T16:33:06,133 copying hca_ingest/importer/conversion/conversion_strategy.py -> build/lib/hca_ingest/importer/conversion 2022-11-18T16:33:06,137 copying hca_ingest/importer/conversion/column_specification.py -> build/lib/hca_ingest/importer/conversion 2022-11-18T16:33:06,143 creating build/lib/hca_ingest/importer/submission 2022-11-18T16:33:06,145 copying hca_ingest/importer/submission/ingest_submitter.py -> build/lib/hca_ingest/importer/submission 2022-11-18T16:33:06,149 copying hca_ingest/importer/submission/__init__.py -> build/lib/hca_ingest/importer/submission 2022-11-18T16:33:06,152 copying hca_ingest/importer/submission/submission.py -> build/lib/hca_ingest/importer/submission 2022-11-18T16:33:06,155 copying hca_ingest/importer/submission/errors.py -> build/lib/hca_ingest/importer/submission 2022-11-18T16:33:06,159 copying hca_ingest/importer/submission/entity_map.py -> build/lib/hca_ingest/importer/submission 2022-11-18T16:33:06,163 copying hca_ingest/importer/submission/entity_linker.py -> build/lib/hca_ingest/importer/submission 2022-11-18T16:33:06,167 copying hca_ingest/importer/submission/entity.py -> build/lib/hca_ingest/importer/submission 2022-11-18T16:33:06,172 creating build/lib/hca_ingest/importer/spreadsheet 2022-11-18T16:33:06,173 copying hca_ingest/importer/spreadsheet/__init__.py -> build/lib/hca_ingest/importer/spreadsheet 2022-11-18T16:33:06,177 copying hca_ingest/importer/spreadsheet/ingest_worksheet.py -> build/lib/hca_ingest/importer/spreadsheet 2022-11-18T16:33:06,180 copying hca_ingest/importer/spreadsheet/ingest_workbook.py -> build/lib/hca_ingest/importer/spreadsheet 2022-11-18T16:33:06,183 running egg_info 2022-11-18T16:33:06,328 writing hca_ingest.egg-info/PKG-INFO 2022-11-18T16:33:06,332 writing dependency_links to hca_ingest.egg-info/dependency_links.txt 2022-11-18T16:33:06,336 writing requirements to hca_ingest.egg-info/requires.txt 2022-11-18T16:33:06,338 writing top-level names to hca_ingest.egg-info/top_level.txt 2022-11-18T16:33:06,418 reading manifest file 'hca_ingest.egg-info/SOURCES.txt' 2022-11-18T16:33:06,425 reading manifest template 'MANIFEST.in' 2022-11-18T16:33:06,426 adding license file 'LICENSE' 2022-11-18T16:33:06,438 writing manifest file 'hca_ingest.egg-info/SOURCES.txt' 2022-11-18T16:33:06,530 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-18T16:33:06,530 setuptools.SetuptoolsDeprecationWarning, 2022-11-18T16:33:06,637 installing to build/bdist.linux-armv7l/wheel 2022-11-18T16:33:06,638 running install 2022-11-18T16:33:06,700 running install_lib 2022-11-18T16:33:06,765 creating build/bdist.linux-armv7l 2022-11-18T16:33:06,766 creating build/bdist.linux-armv7l/wheel 2022-11-18T16:33:06,770 creating build/bdist.linux-armv7l/wheel/hca_ingest 2022-11-18T16:33:06,773 creating build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-11-18T16:33:06,775 copying build/lib/hca_ingest/downloader/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-11-18T16:33:06,778 copying build/lib/hca_ingest/downloader/workbook.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-11-18T16:33:06,781 copying build/lib/hca_ingest/downloader/data_collector.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-11-18T16:33:06,785 copying build/lib/hca_ingest/downloader/entity.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-11-18T16:33:06,789 copying build/lib/hca_ingest/downloader/flattener.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-11-18T16:33:06,793 copying build/lib/hca_ingest/downloader/downloader.py -> build/bdist.linux-armv7l/wheel/hca_ingest/downloader 2022-11-18T16:33:06,797 creating build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-11-18T16:33:06,799 copying build/lib/hca_ingest/api/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-11-18T16:33:06,802 copying build/lib/hca_ingest/api/ingestapi.py -> build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-11-18T16:33:06,807 copying build/lib/hca_ingest/api/requests_utils.py -> build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-11-18T16:33:06,811 copying build/lib/hca_ingest/api/stagingapi.py -> build/bdist.linux-armv7l/wheel/hca_ingest/api 2022-11-18T16:33:06,815 copying build/lib/hca_ingest/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest 2022-11-18T16:33:06,819 creating build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,820 copying build/lib/hca_ingest/utils/token_manager.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,824 copying build/lib/hca_ingest/utils/doctict.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,827 copying build/lib/hca_ingest/utils/IngestError.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,831 copying build/lib/hca_ingest/utils/validationreport.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,834 copying build/lib/hca_ingest/utils/errorreport.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,837 copying build/lib/hca_ingest/utils/generate_redaction_manifest.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,841 copying build/lib/hca_ingest/utils/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,844 copying build/lib/hca_ingest/utils/bundlevalidator.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,847 copying build/lib/hca_ingest/utils/spreadsheet.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,850 copying build/lib/hca_ingest/utils/date.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,854 copying build/lib/hca_ingest/utils/s2s_token_client.py -> build/bdist.linux-armv7l/wheel/hca_ingest/utils 2022-11-18T16:33:06,858 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer 2022-11-18T16:33:06,862 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-11-18T16:33:06,864 copying build/lib/hca_ingest/importer/conversion/metadata_entity.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-11-18T16:33:06,868 copying build/lib/hca_ingest/importer/conversion/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-11-18T16:33:06,872 copying build/lib/hca_ingest/importer/conversion/template_manager.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-11-18T16:33:06,876 copying build/lib/hca_ingest/importer/conversion/utils.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-11-18T16:33:06,880 copying build/lib/hca_ingest/importer/conversion/data_converter.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-11-18T16:33:06,884 copying build/lib/hca_ingest/importer/conversion/exceptions.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-11-18T16:33:06,887 copying build/lib/hca_ingest/importer/conversion/conversion_strategy.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-11-18T16:33:06,892 copying build/lib/hca_ingest/importer/conversion/column_specification.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/conversion 2022-11-18T16:33:06,897 copying build/lib/hca_ingest/importer/importer.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer 2022-11-18T16:33:06,902 copying build/lib/hca_ingest/importer/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer 2022-11-18T16:33:06,906 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-11-18T16:33:06,908 copying build/lib/hca_ingest/importer/submission/ingest_submitter.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-11-18T16:33:06,913 copying build/lib/hca_ingest/importer/submission/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-11-18T16:33:06,916 copying build/lib/hca_ingest/importer/submission/submission.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-11-18T16:33:06,920 copying build/lib/hca_ingest/importer/submission/errors.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-11-18T16:33:06,924 copying build/lib/hca_ingest/importer/submission/entity_map.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-11-18T16:33:06,928 copying build/lib/hca_ingest/importer/submission/entity_linker.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-11-18T16:33:06,933 copying build/lib/hca_ingest/importer/submission/entity.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/submission 2022-11-18T16:33:06,938 creating build/bdist.linux-armv7l/wheel/hca_ingest/importer/spreadsheet 2022-11-18T16:33:06,940 copying build/lib/hca_ingest/importer/spreadsheet/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/spreadsheet 2022-11-18T16:33:06,942 copying build/lib/hca_ingest/importer/spreadsheet/ingest_worksheet.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/spreadsheet 2022-11-18T16:33:06,946 copying build/lib/hca_ingest/importer/spreadsheet/ingest_workbook.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer/spreadsheet 2022-11-18T16:33:06,949 copying build/lib/hca_ingest/importer/data_node.py -> build/bdist.linux-armv7l/wheel/hca_ingest/importer 2022-11-18T16:33:06,953 creating build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,954 copying build/lib/hca_ingest/template/schema_template.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,959 copying build/lib/hca_ingest/template/__init__.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,961 copying build/lib/hca_ingest/template/schema_parser.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,965 copying build/lib/hca_ingest/template/tab_config.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,968 copying build/lib/hca_ingest/template/exceptions.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,972 copying build/lib/hca_ingest/template/spreadsheet_builder.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,976 copying build/lib/hca_ingest/template/migration_parser.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,979 copying build/lib/hca_ingest/template/linked_spreadsheet_builder.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,983 copying build/lib/hca_ingest/template/descriptor.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,987 copying build/lib/hca_ingest/template/vanilla_spreadsheet_builder.py -> build/bdist.linux-armv7l/wheel/hca_ingest/template 2022-11-18T16:33:06,990 running install_egg_info 2022-11-18T16:33:07,062 Copying hca_ingest.egg-info to build/bdist.linux-armv7l/wheel/hca_ingest-2.7.0-py3.7.egg-info 2022-11-18T16:33:07,081 running install_scripts 2022-11-18T16:33:07,243 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-11-18T16:33:07,252 creating build/bdist.linux-armv7l/wheel/hca_ingest-2.7.0.dist-info/WHEEL 2022-11-18T16:33:07,256 creating '/tmp/pip-wheel-_4kzfkz6/hca_ingest-2.7.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-18T16:33:07,260 adding 'hca_ingest/__init__.py' 2022-11-18T16:33:07,264 adding 'hca_ingest/api/__init__.py' 2022-11-18T16:33:07,269 adding 'hca_ingest/api/ingestapi.py' 2022-11-18T16:33:07,272 adding 'hca_ingest/api/requests_utils.py' 2022-11-18T16:33:07,275 adding 'hca_ingest/api/stagingapi.py' 2022-11-18T16:33:07,278 adding 'hca_ingest/downloader/__init__.py' 2022-11-18T16:33:07,281 adding 'hca_ingest/downloader/data_collector.py' 2022-11-18T16:33:07,283 adding 'hca_ingest/downloader/downloader.py' 2022-11-18T16:33:07,285 adding 'hca_ingest/downloader/entity.py' 2022-11-18T16:33:07,289 adding 'hca_ingest/downloader/flattener.py' 2022-11-18T16:33:07,291 adding 'hca_ingest/downloader/workbook.py' 2022-11-18T16:33:07,294 adding 'hca_ingest/importer/__init__.py' 2022-11-18T16:33:07,296 adding 'hca_ingest/importer/data_node.py' 2022-11-18T16:33:07,302 adding 'hca_ingest/importer/importer.py' 2022-11-18T16:33:07,305 adding 'hca_ingest/importer/conversion/__init__.py' 2022-11-18T16:33:07,308 adding 'hca_ingest/importer/conversion/column_specification.py' 2022-11-18T16:33:07,311 adding 'hca_ingest/importer/conversion/conversion_strategy.py' 2022-11-18T16:33:07,314 adding 'hca_ingest/importer/conversion/data_converter.py' 2022-11-18T16:33:07,316 adding 'hca_ingest/importer/conversion/exceptions.py' 2022-11-18T16:33:07,319 adding 'hca_ingest/importer/conversion/metadata_entity.py' 2022-11-18T16:33:07,322 adding 'hca_ingest/importer/conversion/template_manager.py' 2022-11-18T16:33:07,324 adding 'hca_ingest/importer/conversion/utils.py' 2022-11-18T16:33:07,328 adding 'hca_ingest/importer/spreadsheet/__init__.py' 2022-11-18T16:33:07,330 adding 'hca_ingest/importer/spreadsheet/ingest_workbook.py' 2022-11-18T16:33:07,333 adding 'hca_ingest/importer/spreadsheet/ingest_worksheet.py' 2022-11-18T16:33:07,336 adding 'hca_ingest/importer/submission/__init__.py' 2022-11-18T16:33:07,339 adding 'hca_ingest/importer/submission/entity.py' 2022-11-18T16:33:07,342 adding 'hca_ingest/importer/submission/entity_linker.py' 2022-11-18T16:33:07,345 adding 'hca_ingest/importer/submission/entity_map.py' 2022-11-18T16:33:07,347 adding 'hca_ingest/importer/submission/errors.py' 2022-11-18T16:33:07,350 adding 'hca_ingest/importer/submission/ingest_submitter.py' 2022-11-18T16:33:07,352 adding 'hca_ingest/importer/submission/submission.py' 2022-11-18T16:33:07,356 adding 'hca_ingest/template/__init__.py' 2022-11-18T16:33:07,359 adding 'hca_ingest/template/descriptor.py' 2022-11-18T16:33:07,361 adding 'hca_ingest/template/exceptions.py' 2022-11-18T16:33:07,365 adding 'hca_ingest/template/linked_spreadsheet_builder.py' 2022-11-18T16:33:07,368 adding 'hca_ingest/template/migration_parser.py' 2022-11-18T16:33:07,371 adding 'hca_ingest/template/schema_parser.py' 2022-11-18T16:33:07,376 adding 'hca_ingest/template/schema_template.py' 2022-11-18T16:33:07,380 adding 'hca_ingest/template/spreadsheet_builder.py' 2022-11-18T16:33:07,382 adding 'hca_ingest/template/tab_config.py' 2022-11-18T16:33:07,385 adding 'hca_ingest/template/vanilla_spreadsheet_builder.py' 2022-11-18T16:33:07,388 adding 'hca_ingest/utils/IngestError.py' 2022-11-18T16:33:07,390 adding 'hca_ingest/utils/__init__.py' 2022-11-18T16:33:07,392 adding 'hca_ingest/utils/bundlevalidator.py' 2022-11-18T16:33:07,395 adding 'hca_ingest/utils/date.py' 2022-11-18T16:33:07,397 adding 'hca_ingest/utils/doctict.py' 2022-11-18T16:33:07,399 adding 'hca_ingest/utils/errorreport.py' 2022-11-18T16:33:07,402 adding 'hca_ingest/utils/generate_redaction_manifest.py' 2022-11-18T16:33:07,405 adding 'hca_ingest/utils/s2s_token_client.py' 2022-11-18T16:33:07,407 adding 'hca_ingest/utils/spreadsheet.py' 2022-11-18T16:33:07,409 adding 'hca_ingest/utils/token_manager.py' 2022-11-18T16:33:07,411 adding 'hca_ingest/utils/validationreport.py' 2022-11-18T16:33:07,417 adding 'hca_ingest-2.7.0.dist-info/LICENSE' 2022-11-18T16:33:07,420 adding 'hca_ingest-2.7.0.dist-info/METADATA' 2022-11-18T16:33:07,422 adding 'hca_ingest-2.7.0.dist-info/WHEEL' 2022-11-18T16:33:07,424 adding 'hca_ingest-2.7.0.dist-info/top_level.txt' 2022-11-18T16:33:07,427 adding 'hca_ingest-2.7.0.dist-info/RECORD' 2022-11-18T16:33:07,433 removing build/bdist.linux-armv7l/wheel 2022-11-18T16:33:07,711 Building wheel for hca-ingest (setup.py): finished with status 'done' 2022-11-18T16:33:07,720 Created wheel for hca-ingest: filename=hca_ingest-2.7.0-py3-none-any.whl size=71311 sha256=a279a27f74fc706e19a00ca928a07d0cf774a6942a141d5c056744811937d00d 2022-11-18T16:33:07,722 Stored in directory: /tmp/pip-ephem-wheel-cache-uth8zdoh/wheels/5a/e9/ea/513f46de173b91fe97998e230fd6147303bdc33461d529d1b0 2022-11-18T16:33:07,753 Successfully built hca-ingest 2022-11-18T16:33:07,765 Removed build tracker: '/tmp/pip-build-tracker-z5kg1e5l'