2022-11-21T16:48:48,089 Created temporary directory: /tmp/pip-ephem-wheel-cache-k4au4edd 2022-11-21T16:48:48,094 Created temporary directory: /tmp/pip-build-tracker-j09lsx9l 2022-11-21T16:48:48,094 Initialized build tracking at /tmp/pip-build-tracker-j09lsx9l 2022-11-21T16:48:48,095 Created build tracker: /tmp/pip-build-tracker-j09lsx9l 2022-11-21T16:48:48,095 Entered build tracker: /tmp/pip-build-tracker-j09lsx9l 2022-11-21T16:48:48,096 Created temporary directory: /tmp/pip-wheel-2qweoi6d 2022-11-21T16:48:48,105 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-21T16:48:48,111 Created temporary directory: /tmp/pip-ephem-wheel-cache-t57t7un0 2022-11-21T16:48:48,160 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-21T16:48:48,167 2 location(s) to search for versions of graph-kmer-index: 2022-11-21T16:48:48,167 * https://pypi.org/simple/graph-kmer-index/ 2022-11-21T16:48:48,167 * https://www.piwheels.org/simple/graph-kmer-index/ 2022-11-21T16:48:48,168 Fetching project page and analyzing links: https://pypi.org/simple/graph-kmer-index/ 2022-11-21T16:48:48,169 Getting page https://pypi.org/simple/graph-kmer-index/ 2022-11-21T16:48:48,173 Found index url https://pypi.org/simple 2022-11-21T16:48:48,399 Fetched page https://pypi.org/simple/graph-kmer-index/ as application/vnd.pypi.simple.v1+json 2022-11-21T16:48:48,411 Found link https://files.pythonhosted.org/packages/22/28/073dac85e58f120518da39474ea7deccf63213155be5a582b1bd81066772/graph_kmer_index-0.0.1.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.1 2022-11-21T16:48:48,412 Found link https://files.pythonhosted.org/packages/24/82/ba5c1ef118dd114b49176f93bcb1c81df93f4bf9a79ec80e4df1dc14e22f/graph_kmer_index-0.0.2.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.2 2022-11-21T16:48:48,413 Found link https://files.pythonhosted.org/packages/60/ca/4d0e2d0f514cbcbe4ecbc08cdc89099b022f2a9bb22cfd21c2e1b1d5f997/graph_kmer_index-0.0.3.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.3 2022-11-21T16:48:48,413 Found link https://files.pythonhosted.org/packages/c3/ba/2055ec6cba0b68d9428f265b0443bb80e5c938d50418c8f2729966697cfa/graph_kmer_index-0.0.4.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.4 2022-11-21T16:48:48,414 Found link https://files.pythonhosted.org/packages/30/b6/63b5f1fe1f8dbca4d015ff101973f98ba1eecd818ffc37c71a574748fe43/graph_kmer_index-0.0.5.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.5 2022-11-21T16:48:48,415 Found link https://files.pythonhosted.org/packages/85/6f/cf637460304f4cd7740ba75ef6757b336161054f5ed9dc4f1c827ddb49ae/graph_kmer_index-0.0.6.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.6 2022-11-21T16:48:48,415 Found link https://files.pythonhosted.org/packages/1d/9d/3b77d6cd5b8f37cde4a8e7e2d29748eb989c5ed3525d4d36b5cb42c30924/graph_kmer_index-0.0.7.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.7 2022-11-21T16:48:48,416 Found link https://files.pythonhosted.org/packages/a3/8a/47497953ba83e88c711d662ba18dc3f9b7e2478f906951a74ea1f8149194/graph_kmer_index-0.0.8.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.8 2022-11-21T16:48:48,417 Found link https://files.pythonhosted.org/packages/d5/9e/92a9b1aec3f373edd60a2ce878dcd5f1552348870debd55a22ab8117210d/graph_kmer_index-0.0.9.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.9 2022-11-21T16:48:48,418 Found link https://files.pythonhosted.org/packages/da/bc/64e9caae13205d9e13803263f74e750cb29d352a4b12b3c12d0aa38c6996/graph_kmer_index-0.0.10.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.10 2022-11-21T16:48:48,418 Found link https://files.pythonhosted.org/packages/e0/95/4ca6b15e4f0a6298d449d7849f825fdd04e89348e4075b902cd6e64ec9db/graph_kmer_index-0.0.11.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.11 2022-11-21T16:48:48,419 Found link https://files.pythonhosted.org/packages/aa/8e/ad3825d2eb988a9ff4ef5acc2f6675940175d2b4f90c9aa812260d58e6b9/graph_kmer_index-0.0.12.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.12 2022-11-21T16:48:48,420 Found link https://files.pythonhosted.org/packages/3c/84/8abc45636caad9aa94ed28ad8c84c946feb90faec9e6df307aee237b2ab1/graph_kmer_index-0.0.13.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.13 2022-11-21T16:48:48,420 Found link https://files.pythonhosted.org/packages/d0/20/e59a4ef5a32c054a65ad8e913fdcbde57d090a3a5c080fee0bc3cb8998fb/graph_kmer_index-0.0.14.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.14 2022-11-21T16:48:48,421 Found link https://files.pythonhosted.org/packages/3b/44/34098e4c755c368e492c2d8d4d8a387370f0504b64cce465ae8a8ba5897e/graph_kmer_index-0.0.15.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.15 2022-11-21T16:48:48,422 Found link https://files.pythonhosted.org/packages/47/f5/64b7237dff7941673607af7a3a3dc53b98cf2de639d065770cf3b5562e1e/graph_kmer_index-0.0.16.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.16 2022-11-21T16:48:48,423 Found link https://files.pythonhosted.org/packages/22/f8/7d9be5b298f4b5c4ef513ff22a07a8003a2b73dcb94cda119499200a46ca/graph_kmer_index-0.0.18.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.18 2022-11-21T16:48:48,423 Found link https://files.pythonhosted.org/packages/cf/d5/26807df9b58b43ab503c7ac00ebc2ef2140697bbc44f1f23306454eb5cb5/graph_kmer_index-0.0.19.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.19 2022-11-21T16:48:48,424 Found link https://files.pythonhosted.org/packages/e7/c6/df8f8d38ba597b78f1818060313117233a79883ad13aaa9677f00d477921/graph_kmer_index-0.0.20.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.20 2022-11-21T16:48:48,425 Found link https://files.pythonhosted.org/packages/f5/9a/1d55be038974880bc09627566280eb526ff86935f207485326e50e029d65/graph_kmer_index-0.0.21.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.21 2022-11-21T16:48:48,425 Found link https://files.pythonhosted.org/packages/12/f4/b291282a70e450384f237f9669c0120a983431d04c3383f04e491c90c7df/graph_kmer_index-0.0.22.tar.gz (from https://pypi.org/simple/graph-kmer-index/), version: 0.0.22 2022-11-21T16:48:48,426 Fetching project page and analyzing links: https://www.piwheels.org/simple/graph-kmer-index/ 2022-11-21T16:48:48,427 Getting page https://www.piwheels.org/simple/graph-kmer-index/ 2022-11-21T16:48:48,429 Found index url https://www.piwheels.org/simple 2022-11-21T16:48:48,704 Fetched page https://www.piwheels.org/simple/graph-kmer-index/ as text/html 2022-11-21T16:48:48,720 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.21-py3-none-any.whl#sha256=843e921f08fffd994913c70e34722c14d8b6ee5282f5833a9c375da305c2be53 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,720 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.20-py3-none-any.whl#sha256=cf046f765e1cec9806e5a89266d57853e9a12f94546eaec219bdeff2b5282f74 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,721 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.19-py3-none-any.whl#sha256=a99410255a362846c47c9a354df2dc0c2b5041f8b8fd5457140fa1224378833d (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,721 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.18-py3-none-any.whl#sha256=87240583d8d8b55cd263e35547839e2b35e6d0c7661022267b3e317b35d603ca (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,722 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.16-py3-none-any.whl#sha256=6cb933856e8c73bad695162a88af521351b58c561c5acd14b39d17b47ad9687c (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,723 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.15-py3-none-any.whl#sha256=3aef9f4070f224ccac25e210d7d320743feab601b3e08ebe252b792c6555f582 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,723 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.14-py3-none-any.whl#sha256=cfdae906b792030ebc37942398b4d1aed7020ccbf68865908a01171ebdfcac13 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,724 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.13-py3-none-any.whl#sha256=46d06e310dcf8df4b1e200f323bdcc369033c38274b4c16b21771f0fcd3bcb65 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,724 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.12-py3-none-any.whl#sha256=de0d7ac9eb5aa548f4ca72368c5838728d213c18828eba7fdc5fc2ceb1c33462 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,725 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.11-py3-none-any.whl#sha256=b9ca99aac381a53f67f6568d644adbe578667bf71eb2f2a452782d0aba108a09 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,725 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.10-py3-none-any.whl#sha256=217299b677243dbf47960dfae10fb0ad1e38ea19a379242f1fe2a6b37d074470 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,726 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.9-py3-none-any.whl#sha256=6e324ca7e7bb2fa9b8f38f6c5a475ca611ebdef9c1d83b9e8bb200b162617e45 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,726 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.8-py3-none-any.whl#sha256=bc3ec2df15bea3743862a1c87fedff16a27cb09c16c19964766c6165ebb89cb4 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,727 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.7-py3-none-any.whl#sha256=06b0d0327eaea13e4c5560c1b31a351c6394d9e768a9208defe61e9dd6b00d48 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,727 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.6-py3-none-any.whl#sha256=17200ce1fb06eef1b992e6379ceba026dda139105111e57d38115d96ae9507d0 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,728 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.5-py3-none-any.whl#sha256=0e099425d740bd591080101db0b15c9e1ef158806b646d48c0469388e35161a3 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,729 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.4-py3-none-any.whl#sha256=76e34c73570892a46bd5dbafb6455be3784c8d65c74424eb68bbd46b82775ca4 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,729 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.3-py3-none-any.whl#sha256=54e306642c6d6f6a5f900211c32309643d7a447c8b00bc13a7019f37d3697e9c (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,730 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.2-py3-none-any.whl#sha256=541694b0a41504c60e3d8ccc60056e8b5c70606adaf0a9513bc4825b618f33dd (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,730 Skipping link: No binaries permitted for graph-kmer-index: https://www.piwheels.org/simple/graph-kmer-index/graph_kmer_index-0.0.1-py3-none-any.whl#sha256=bca31796832664fc5c980ff21d4852daacd99184492a30c0e575f144eec8d3c9 (from https://www.piwheels.org/simple/graph-kmer-index/) 2022-11-21T16:48:48,731 Skipping link: not a file: https://www.piwheels.org/simple/graph-kmer-index/ 2022-11-21T16:48:48,731 Skipping link: not a file: https://pypi.org/simple/graph-kmer-index/ 2022-11-21T16:48:48,772 Given no hashes to check 1 links for project 'graph-kmer-index': discarding no candidates 2022-11-21T16:48:48,802 Collecting graph-kmer-index==0.0.22 2022-11-21T16:48:48,807 Created temporary directory: /tmp/pip-unpack-uq_55keo 2022-11-21T16:48:49,040 Downloading graph_kmer_index-0.0.22.tar.gz (33 kB) 2022-11-21T16:48:49,194 Added graph-kmer-index==0.0.22 from https://files.pythonhosted.org/packages/12/f4/b291282a70e450384f237f9669c0120a983431d04c3383f04e491c90c7df/graph_kmer_index-0.0.22.tar.gz to build tracker '/tmp/pip-build-tracker-j09lsx9l' 2022-11-21T16:48:49,196 Running setup.py (path:/tmp/pip-wheel-2qweoi6d/graph-kmer-index_a123ac3bffc44bffb453bb92a2d553fd/setup.py) egg_info for package graph-kmer-index 2022-11-21T16:48:49,197 Created temporary directory: /tmp/pip-pip-egg-info-valj0dog 2022-11-21T16:48:49,198 Preparing metadata (setup.py): started 2022-11-21T16:48:49,200 Running command python setup.py egg_info 2022-11-21T16:48:51,922 running egg_info 2022-11-21T16:48:51,927 creating /tmp/pip-pip-egg-info-valj0dog/graph_kmer_index.egg-info 2022-11-21T16:48:52,018 writing /tmp/pip-pip-egg-info-valj0dog/graph_kmer_index.egg-info/PKG-INFO 2022-11-21T16:48:52,024 writing dependency_links to /tmp/pip-pip-egg-info-valj0dog/graph_kmer_index.egg-info/dependency_links.txt 2022-11-21T16:48:52,027 writing entry points to /tmp/pip-pip-egg-info-valj0dog/graph_kmer_index.egg-info/entry_points.txt 2022-11-21T16:48:52,030 writing requirements to /tmp/pip-pip-egg-info-valj0dog/graph_kmer_index.egg-info/requires.txt 2022-11-21T16:48:52,032 writing top-level names to /tmp/pip-pip-egg-info-valj0dog/graph_kmer_index.egg-info/top_level.txt 2022-11-21T16:48:52,034 writing manifest file '/tmp/pip-pip-egg-info-valj0dog/graph_kmer_index.egg-info/SOURCES.txt' 2022-11-21T16:48:52,319 reading manifest file '/tmp/pip-pip-egg-info-valj0dog/graph_kmer_index.egg-info/SOURCES.txt' 2022-11-21T16:48:52,328 writing manifest file '/tmp/pip-pip-egg-info-valj0dog/graph_kmer_index.egg-info/SOURCES.txt' 2022-11-21T16:48:52,488 Preparing metadata (setup.py): finished with status 'done' 2022-11-21T16:48:52,501 Source in /tmp/pip-wheel-2qweoi6d/graph-kmer-index_a123ac3bffc44bffb453bb92a2d553fd has version 0.0.22, which satisfies requirement graph-kmer-index==0.0.22 from https://files.pythonhosted.org/packages/12/f4/b291282a70e450384f237f9669c0120a983431d04c3383f04e491c90c7df/graph_kmer_index-0.0.22.tar.gz 2022-11-21T16:48:52,503 Removed graph-kmer-index==0.0.22 from https://files.pythonhosted.org/packages/12/f4/b291282a70e450384f237f9669c0120a983431d04c3383f04e491c90c7df/graph_kmer_index-0.0.22.tar.gz from build tracker '/tmp/pip-build-tracker-j09lsx9l' 2022-11-21T16:48:52,513 Created temporary directory: /tmp/pip-unpack-izycv61a 2022-11-21T16:48:52,514 Building wheels for collected packages: graph-kmer-index 2022-11-21T16:48:52,523 Created temporary directory: /tmp/pip-wheel-qeyuuc52 2022-11-21T16:48:52,524 Building wheel for graph-kmer-index (setup.py): started 2022-11-21T16:48:52,526 Destination directory: /tmp/pip-wheel-qeyuuc52 2022-11-21T16:48:52,526 Running command python setup.py bdist_wheel 2022-11-21T16:48:55,278 running bdist_wheel 2022-11-21T16:48:56,124 running build 2022-11-21T16:48:56,124 running build_py 2022-11-21T16:48:56,230 creating build 2022-11-21T16:48:56,230 creating build/lib 2022-11-21T16:48:56,232 creating build/lib/graph_kmer_index 2022-11-21T16:48:56,234 copying graph_kmer_index/kmer_finder.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,240 copying graph_kmer_index/kmer_counter.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,243 copying graph_kmer_index/flat_kmers.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,247 copying graph_kmer_index/count_min_sketch_kmer_counter.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,250 copying graph_kmer_index/npset.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,253 copying graph_kmer_index/index_bundle.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,257 copying graph_kmer_index/kmer_frequency_index.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,260 copying graph_kmer_index/unique_kmer_index.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,263 copying graph_kmer_index/reference_kmer_index.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,267 copying graph_kmer_index/kmer_hashing.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,270 copying graph_kmer_index/structural_variants.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,273 copying graph_kmer_index/read_kmers.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,277 copying graph_kmer_index/collision_free_kmer_index.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,282 copying graph_kmer_index/variant_nodes_index.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,285 copying graph_kmer_index/unique_variant_kmers.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,289 copying graph_kmer_index/shared_mem.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,293 copying graph_kmer_index/logn_hash_map.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,297 copying graph_kmer_index/nplist.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,300 copying graph_kmer_index/__init__.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,303 copying graph_kmer_index/multi_value_hashtable.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,306 copying graph_kmer_index/reverse_kmer_index.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,310 copying graph_kmer_index/indel_kmer_finder.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,313 copying graph_kmer_index/bionumpy_wrapper.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,316 copying graph_kmer_index/critical_graph_paths.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,320 copying graph_kmer_index/command_line_interface.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,326 copying graph_kmer_index/snp_kmer_finder.py -> build/lib/graph_kmer_index 2022-11-21T16:48:56,476 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-21T16:48:56,476 setuptools.SetuptoolsDeprecationWarning, 2022-11-21T16:48:56,569 installing to build/bdist.linux-armv7l/wheel 2022-11-21T16:48:56,570 running install 2022-11-21T16:48:56,632 running install_lib 2022-11-21T16:48:56,729 creating build/bdist.linux-armv7l 2022-11-21T16:48:56,730 creating build/bdist.linux-armv7l/wheel 2022-11-21T16:48:56,735 creating build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,737 copying build/lib/graph_kmer_index/kmer_finder.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,744 copying build/lib/graph_kmer_index/kmer_counter.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,748 copying build/lib/graph_kmer_index/flat_kmers.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,753 copying build/lib/graph_kmer_index/count_min_sketch_kmer_counter.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,757 copying build/lib/graph_kmer_index/npset.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,762 copying build/lib/graph_kmer_index/index_bundle.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,766 copying build/lib/graph_kmer_index/kmer_frequency_index.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,770 copying build/lib/graph_kmer_index/unique_kmer_index.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,774 copying build/lib/graph_kmer_index/reference_kmer_index.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,778 copying build/lib/graph_kmer_index/kmer_hashing.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,781 copying build/lib/graph_kmer_index/structural_variants.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,785 copying build/lib/graph_kmer_index/read_kmers.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,789 copying build/lib/graph_kmer_index/collision_free_kmer_index.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,794 copying build/lib/graph_kmer_index/variant_nodes_index.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,797 copying build/lib/graph_kmer_index/unique_variant_kmers.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,802 copying build/lib/graph_kmer_index/shared_mem.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,806 copying build/lib/graph_kmer_index/logn_hash_map.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,810 copying build/lib/graph_kmer_index/nplist.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,813 copying build/lib/graph_kmer_index/__init__.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,817 copying build/lib/graph_kmer_index/multi_value_hashtable.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,820 copying build/lib/graph_kmer_index/reverse_kmer_index.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,824 copying build/lib/graph_kmer_index/indel_kmer_finder.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,827 copying build/lib/graph_kmer_index/bionumpy_wrapper.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,830 copying build/lib/graph_kmer_index/critical_graph_paths.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,834 copying build/lib/graph_kmer_index/command_line_interface.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,839 copying build/lib/graph_kmer_index/snp_kmer_finder.py -> build/bdist.linux-armv7l/wheel/graph_kmer_index 2022-11-21T16:48:56,843 running install_egg_info 2022-11-21T16:48:57,065 running egg_info 2022-11-21T16:48:57,066 creating graph_kmer_index.egg-info 2022-11-21T16:48:57,156 writing graph_kmer_index.egg-info/PKG-INFO 2022-11-21T16:48:57,161 writing dependency_links to graph_kmer_index.egg-info/dependency_links.txt 2022-11-21T16:48:57,164 writing entry points to graph_kmer_index.egg-info/entry_points.txt 2022-11-21T16:48:57,166 writing requirements to graph_kmer_index.egg-info/requires.txt 2022-11-21T16:48:57,168 writing top-level names to graph_kmer_index.egg-info/top_level.txt 2022-11-21T16:48:57,170 writing manifest file 'graph_kmer_index.egg-info/SOURCES.txt' 2022-11-21T16:48:57,268 reading manifest file 'graph_kmer_index.egg-info/SOURCES.txt' 2022-11-21T16:48:57,277 writing manifest file 'graph_kmer_index.egg-info/SOURCES.txt' 2022-11-21T16:48:57,280 Copying graph_kmer_index.egg-info to build/bdist.linux-armv7l/wheel/graph_kmer_index-0.0.22-py3.7.egg-info 2022-11-21T16:48:57,307 running install_scripts 2022-11-21T16:48:57,477 creating build/bdist.linux-armv7l/wheel/graph_kmer_index-0.0.22.dist-info/WHEEL 2022-11-21T16:48:57,481 creating '/tmp/pip-wheel-qeyuuc52/graph_kmer_index-0.0.22-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-21T16:48:57,487 adding 'graph_kmer_index/__init__.py' 2022-11-21T16:48:57,489 adding 'graph_kmer_index/bionumpy_wrapper.py' 2022-11-21T16:48:57,494 adding 'graph_kmer_index/collision_free_kmer_index.py' 2022-11-21T16:48:57,503 adding 'graph_kmer_index/command_line_interface.py' 2022-11-21T16:48:57,505 adding 'graph_kmer_index/count_min_sketch_kmer_counter.py' 2022-11-21T16:48:57,508 adding 'graph_kmer_index/critical_graph_paths.py' 2022-11-21T16:48:57,511 adding 'graph_kmer_index/flat_kmers.py' 2022-11-21T16:48:57,514 adding 'graph_kmer_index/indel_kmer_finder.py' 2022-11-21T16:48:57,516 adding 'graph_kmer_index/index_bundle.py' 2022-11-21T16:48:57,518 adding 'graph_kmer_index/kmer_counter.py' 2022-11-21T16:48:57,524 adding 'graph_kmer_index/kmer_finder.py' 2022-11-21T16:48:57,527 adding 'graph_kmer_index/kmer_frequency_index.py' 2022-11-21T16:48:57,529 adding 'graph_kmer_index/kmer_hashing.py' 2022-11-21T16:48:57,532 adding 'graph_kmer_index/logn_hash_map.py' 2022-11-21T16:48:57,534 adding 'graph_kmer_index/multi_value_hashtable.py' 2022-11-21T16:48:57,537 adding 'graph_kmer_index/nplist.py' 2022-11-21T16:48:57,539 adding 'graph_kmer_index/npset.py' 2022-11-21T16:48:57,542 adding 'graph_kmer_index/read_kmers.py' 2022-11-21T16:48:57,545 adding 'graph_kmer_index/reference_kmer_index.py' 2022-11-21T16:48:57,547 adding 'graph_kmer_index/reverse_kmer_index.py' 2022-11-21T16:48:57,550 adding 'graph_kmer_index/shared_mem.py' 2022-11-21T16:48:57,555 adding 'graph_kmer_index/snp_kmer_finder.py' 2022-11-21T16:48:57,558 adding 'graph_kmer_index/structural_variants.py' 2022-11-21T16:48:57,561 adding 'graph_kmer_index/unique_kmer_index.py' 2022-11-21T16:48:57,565 adding 'graph_kmer_index/unique_variant_kmers.py' 2022-11-21T16:48:57,567 adding 'graph_kmer_index/variant_nodes_index.py' 2022-11-21T16:48:57,572 adding 'graph_kmer_index-0.0.22.dist-info/METADATA' 2022-11-21T16:48:57,573 adding 'graph_kmer_index-0.0.22.dist-info/WHEEL' 2022-11-21T16:48:57,575 adding 'graph_kmer_index-0.0.22.dist-info/entry_points.txt' 2022-11-21T16:48:57,576 adding 'graph_kmer_index-0.0.22.dist-info/top_level.txt' 2022-11-21T16:48:57,579 adding 'graph_kmer_index-0.0.22.dist-info/RECORD' 2022-11-21T16:48:57,582 removing build/bdist.linux-armv7l/wheel 2022-11-21T16:48:57,791 Building wheel for graph-kmer-index (setup.py): finished with status 'done' 2022-11-21T16:48:57,799 Created wheel for graph-kmer-index: filename=graph_kmer_index-0.0.22-py3-none-any.whl size=43120 sha256=4a28453842416326b882ce21fb925006e81fc18fdedc254c26df19452247b55e 2022-11-21T16:48:57,801 Stored in directory: /tmp/pip-ephem-wheel-cache-t57t7un0/wheels/60/00/c3/6d61af471cbfb4254631840cafab275f95746ae674b35eadc9 2022-11-21T16:48:57,828 Successfully built graph-kmer-index 2022-11-21T16:48:57,839 Removed build tracker: '/tmp/pip-build-tracker-j09lsx9l'