2022-11-21T19:08:27,214 Created temporary directory: /tmp/pip-ephem-wheel-cache-8ynly2li 2022-11-21T19:08:27,219 Created temporary directory: /tmp/pip-build-tracker-wxl_g1n3 2022-11-21T19:08:27,219 Initialized build tracking at /tmp/pip-build-tracker-wxl_g1n3 2022-11-21T19:08:27,220 Created build tracker: /tmp/pip-build-tracker-wxl_g1n3 2022-11-21T19:08:27,220 Entered build tracker: /tmp/pip-build-tracker-wxl_g1n3 2022-11-21T19:08:27,222 Created temporary directory: /tmp/pip-wheel-c1tf9jqt 2022-11-21T19:08:27,229 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-21T19:08:27,234 Created temporary directory: /tmp/pip-ephem-wheel-cache-nh6mjs56 2022-11-21T19:08:27,289 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-21T19:08:27,296 2 location(s) to search for versions of sequana: 2022-11-21T19:08:27,296 * https://pypi.org/simple/sequana/ 2022-11-21T19:08:27,296 * https://www.piwheels.org/simple/sequana/ 2022-11-21T19:08:27,297 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2022-11-21T19:08:27,298 Getting page https://pypi.org/simple/sequana/ 2022-11-21T19:08:27,302 Found index url https://pypi.org/simple 2022-11-21T19:08:27,492 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2022-11-21T19:08:27,530 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from 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https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.20 2022-11-21T19:08:27,549 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.21 2022-11-21T19:08:27,550 Found link https://files.pythonhosted.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.0 2022-11-21T19:08:27,551 Found link https://files.pythonhosted.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.1 2022-11-21T19:08:27,552 Found link https://files.pythonhosted.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.3.0 2022-11-21T19:08:27,552 Found link https://files.pythonhosted.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.0 2022-11-21T19:08:27,553 Found link https://files.pythonhosted.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.1 2022-11-21T19:08:27,554 Found link https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.2 2022-11-21T19:08:27,554 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.0 2022-11-21T19:08:27,555 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.1 2022-11-21T19:08:27,556 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.2 2022-11-21T19:08:27,556 Found link https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.0 2022-11-21T19:08:27,557 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.1 2022-11-21T19:08:27,558 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.2 2022-11-21T19:08:27,559 Found link https://files.pythonhosted.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3 2022-11-21T19:08:27,559 Found link https://files.pythonhosted.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3.post1 2022-11-21T19:08:27,560 Found link https://files.pythonhosted.org/packages/0b/4b/d9ffbc2b826fc1c9bd8059fb44e4965ad05668650dd9ff495e21a57b1fd0/sequana-0.6.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.4 2022-11-21T19:08:27,561 Found link https://files.pythonhosted.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post1 2022-11-21T19:08:27,561 Found link https://files.pythonhosted.org/packages/da/5e/2859c6bfd78c5abb2bbb72a432e052678829511a166524da97c37d776c9a/sequana-0.6.5.post2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post2 2022-11-21T19:08:27,562 Found link https://files.pythonhosted.org/packages/74/dd/db06102f885ecc1ac569b3d0bf40798402cfe2d0ed0162c363580aff9979/sequana-0.6.5.post3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post3 2022-11-21T19:08:27,563 Found link https://files.pythonhosted.org/packages/b8/5a/0e69348ba763eeed3686ee64c13b31b3b418c3d365488dc225ad7063bd87/sequana-0.7.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.0 2022-11-21T19:08:27,563 Found link https://files.pythonhosted.org/packages/3e/6f/642ff17496d724c79e63165f22215043153fdeca7272e7c2bb2d0f7d00b7/sequana-0.7.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.1 2022-11-21T19:08:27,564 Found link https://files.pythonhosted.org/packages/5a/0b/12b137f2edaaabd10323ac0a66af7b8aa2cf2af2c8a5b18e2d1467644eb2/sequana-0.8.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.0 2022-11-21T19:08:27,565 Found link https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.1 2022-11-21T19:08:27,565 Found link 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https://files.pythonhosted.org/packages/28/9c/16feabf3ddcf6c2ecd71eebfba708d6f7c875af4a3584fecd2cbbef8f434/sequana-0.14.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.4 2022-11-21T19:08:27,588 Found link https://files.pythonhosted.org/packages/6d/74/98493274ca25359800e8f4ca53f49e968ef1a1c0d47fc5eaeb40f09829b2/sequana-0.14.5.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.5 2022-11-21T19:08:27,589 Fetching project page and analyzing links: https://www.piwheels.org/simple/sequana/ 2022-11-21T19:08:27,590 Getting page https://www.piwheels.org/simple/sequana/ 2022-11-21T19:08:27,592 Found index url https://www.piwheels.org/simple 2022-11-21T19:08:27,824 Fetched page https://www.piwheels.org/simple/sequana/ as text/html 2022-11-21T19:08:27,878 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.14.4-py3-none-any.whl#sha256=bae35993a96119dfaa53882cd7b2e58217af54247efe50e55da042393f694792 (from 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2022-11-21T19:08:27,904 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.3.0-py3-none-any.whl#sha256=784c45559b3813a77c854c88c7f87f069fc80854dab49c4ce554d9e8d955bfee (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,905 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.2.1-py3-none-any.whl#sha256=6c243101661c5b7e001970929b3f0854775ff25ec464016bac56bed727d1af42 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,905 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.2.0-py3-none-any.whl#sha256=3f93bab506968797bfa09bd546a7890f00035664062d87d06c5cc0cae18ae47d (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,906 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.21-py3-none-any.whl#sha256=39c81be55199636ec0613bef138ee06c6484b7fe1fe77cfecd372a3c757a1060 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,906 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.20-py3-none-any.whl#sha256=443bc96ad7fb6fd2e4f68246cd5e0d14513ec95d0b41dcad255eff04d5ec5448 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,907 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.19-py3-none-any.whl#sha256=072add6f657fd5ba0c484c282d0eae596f1b81bbbe5d73d01ee428afd896b26e (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,907 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.18-py3-none-any.whl#sha256=325c4e727752bdcd6411fc583c6c67f5c153ccefe6a6fa61a5bb136c4cacb24f (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,908 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.17.1-py3-none-any.whl#sha256=42ab5898af408588dff9d91d1e90f24ce831d1fc6c6298c2ab58efd248995a84 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,908 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.16-py3-none-any.whl#sha256=8f1f80eb30386474322cbc9cb6d8ccb98397b4ebefa290886f2631f3b3540d56 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,909 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.15-py3-none-any.whl#sha256=d285757bc8a46c7b331b3a27a79a559517e57b337e0d1381e8049e125f91b558 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,909 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.14-py3-none-any.whl#sha256=ced50d95b3a00f2f8103c06a1cb6bb4097d8d4a08c461bf26525f6afe8ff75e0 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,910 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.13-py3-none-any.whl#sha256=d79163ff3005e50c03bd3d241bd28c77fc27b149ca3cafcaac73dd11f3da756a (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,910 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.12-py3-none-any.whl#sha256=3f04e8007283308a1ca403222a81dfa0b39e862fc4b273b877ac7c0515aa1bed (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,911 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.11-py3-none-any.whl#sha256=0514b5d913fc13bc5bd0581143c312ce0e8962bd493655d11666cd1ffc4cae27 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,911 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.10-py3-none-any.whl#sha256=407656fa50b3fc2277e6d63fcd545fc4e9c13092a89a2a5cc782f84d008725b5 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,912 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.9-py3-none-any.whl#sha256=d388a5c84fd9f1adb5094860b47e54b8ec1fc5dd60da99b5b7a4bd92471e1e5b (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,912 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.8-py3-none-any.whl#sha256=25d68d94847d23aecd8d532f01ab95b7a8318fb5dc9ad5bbc87731b0968dc4ea (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,913 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.7-py3-none-any.whl#sha256=ccad69fd14b518346bb120b0790f15e4e949a563a0b1e560b9410a9d10d00f42 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,913 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.6-py3-none-any.whl#sha256=610326506e644e9df180931d8a20a48852a8196ba9c4d0e9aa6d1acb88d4e615 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,914 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.5-py3-none-any.whl#sha256=6fba4d02c27c802f9371c940699ef0ece1e24bffb7553bcb9720cc07ca2a66aa (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,914 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.4-py3-none-any.whl#sha256=8f3002523e9b7584a718eb2f1282a811eee489863f47e56aff0094be65fd04d0 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,915 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.2-py3-none-any.whl#sha256=489f87ea4af5d8111aaf0b2603e4dbc8d44a47ad6a14eb44b2157490ccc4513c (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,915 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,916 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,916 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,917 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2022-11-21T19:08:27,918 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2022-11-21T19:08:27,918 Skipping link: not a file: https://pypi.org/simple/sequana/ 2022-11-21T19:08:27,980 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2022-11-21T19:08:28,011 Collecting sequana==0.14.5 2022-11-21T19:08:28,015 Created temporary directory: /tmp/pip-unpack-voefybdn 2022-11-21T19:08:28,116 Downloading sequana-0.14.5.tar.gz (1.5 MB) 2022-11-21T19:08:30,332 Added sequana==0.14.5 from https://files.pythonhosted.org/packages/6d/74/98493274ca25359800e8f4ca53f49e968ef1a1c0d47fc5eaeb40f09829b2/sequana-0.14.5.tar.gz to build tracker '/tmp/pip-build-tracker-wxl_g1n3' 2022-11-21T19:08:30,335 Running setup.py (path:/tmp/pip-wheel-c1tf9jqt/sequana_3a0f9b2642e34ddbb54385c88235c6c9/setup.py) egg_info for package sequana 2022-11-21T19:08:30,336 Created temporary directory: /tmp/pip-pip-egg-info-y179wcny 2022-11-21T19:08:30,337 Preparing metadata (setup.py): started 2022-11-21T19:08:30,339 Running command python setup.py egg_info 2022-11-21T19:08:33,277 running egg_info 2022-11-21T19:08:33,282 creating /tmp/pip-pip-egg-info-y179wcny/sequana.egg-info 2022-11-21T19:08:33,337 writing /tmp/pip-pip-egg-info-y179wcny/sequana.egg-info/PKG-INFO 2022-11-21T19:08:33,344 writing dependency_links to /tmp/pip-pip-egg-info-y179wcny/sequana.egg-info/dependency_links.txt 2022-11-21T19:08:33,349 writing entry points to /tmp/pip-pip-egg-info-y179wcny/sequana.egg-info/entry_points.txt 2022-11-21T19:08:33,353 writing requirements to /tmp/pip-pip-egg-info-y179wcny/sequana.egg-info/requires.txt 2022-11-21T19:08:33,355 writing top-level names to /tmp/pip-pip-egg-info-y179wcny/sequana.egg-info/top_level.txt 2022-11-21T19:08:33,357 writing manifest file '/tmp/pip-pip-egg-info-y179wcny/sequana.egg-info/SOURCES.txt' 2022-11-21T19:08:34,048 reading manifest file '/tmp/pip-pip-egg-info-y179wcny/sequana.egg-info/SOURCES.txt' 2022-11-21T19:08:34,051 reading manifest template 'MANIFEST.in' 2022-11-21T19:08:34,057 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-11-21T19:08:34,060 warning: no previously-included files matching '*pyc' found under directory '*' 2022-11-21T19:08:34,439 warning: no files found matching 'test/requirements*txt' 2022-11-21T19:08:34,443 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-11-21T19:08:34,446 warning: no previously-included files matching '*' found under directory 'test' 2022-11-21T19:08:34,448 warning: no previously-included files matching '*' found under directory 'doc' 2022-11-21T19:08:34,451 warning: no previously-included files found matching 'sequana/rm2.py' 2022-11-21T19:08:34,452 adding license file 'LICENSE' 2022-11-21T19:08:34,492 writing manifest file '/tmp/pip-pip-egg-info-y179wcny/sequana.egg-info/SOURCES.txt' 2022-11-21T19:08:34,696 Preparing metadata (setup.py): finished with status 'done' 2022-11-21T19:08:34,713 Source in /tmp/pip-wheel-c1tf9jqt/sequana_3a0f9b2642e34ddbb54385c88235c6c9 has version 0.14.5, which satisfies requirement sequana==0.14.5 from https://files.pythonhosted.org/packages/6d/74/98493274ca25359800e8f4ca53f49e968ef1a1c0d47fc5eaeb40f09829b2/sequana-0.14.5.tar.gz 2022-11-21T19:08:34,715 Removed sequana==0.14.5 from https://files.pythonhosted.org/packages/6d/74/98493274ca25359800e8f4ca53f49e968ef1a1c0d47fc5eaeb40f09829b2/sequana-0.14.5.tar.gz from build tracker '/tmp/pip-build-tracker-wxl_g1n3' 2022-11-21T19:08:34,729 Created temporary directory: /tmp/pip-unpack-s2bh60ml 2022-11-21T19:08:34,730 Building wheels for collected packages: sequana 2022-11-21T19:08:34,740 Created temporary directory: /tmp/pip-wheel-av1nn0e6 2022-11-21T19:08:34,741 Building wheel for sequana (setup.py): started 2022-11-21T19:08:34,743 Destination directory: /tmp/pip-wheel-av1nn0e6 2022-11-21T19:08:34,743 Running command python setup.py bdist_wheel 2022-11-21T19:08:37,617 running bdist_wheel 2022-11-21T19:08:38,340 running build 2022-11-21T19:08:38,341 running build_py 2022-11-21T19:08:38,411 creating build 2022-11-21T19:08:38,412 creating build/lib 2022-11-21T19:08:38,413 creating build/lib/sequana 2022-11-21T19:08:38,415 copying sequana/phred.py -> build/lib/sequana 2022-11-21T19:08:38,420 copying sequana/snpeff.py -> build/lib/sequana 2022-11-21T19:08:38,424 copying sequana/bamtools.py -> build/lib/sequana 2022-11-21T19:08:38,430 copying sequana/vcftools.py -> build/lib/sequana 2022-11-21T19:08:38,434 copying sequana/__init__.py -> build/lib/sequana 2022-11-21T19:08:38,437 copying sequana/coverage.py -> build/lib/sequana 2022-11-21T19:08:38,442 copying sequana/cnv.py -> build/lib/sequana 2022-11-21T19:08:38,445 copying sequana/bedtools.py -> build/lib/sequana 2022-11-21T19:08:38,452 copying sequana/iem.py -> build/lib/sequana 2022-11-21T19:08:38,457 copying sequana/lazy.py -> build/lib/sequana 2022-11-21T19:08:38,460 copying sequana/trf.py -> build/lib/sequana 2022-11-21T19:08:38,464 copying sequana/assembly.py -> build/lib/sequana 2022-11-21T19:08:38,468 copying sequana/genbank.py -> build/lib/sequana 2022-11-21T19:08:38,472 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2022-11-21T19:08:38,476 copying sequana/summary.py -> build/lib/sequana 2022-11-21T19:08:38,480 copying sequana/kmer.py -> build/lib/sequana 2022-11-21T19:08:38,484 copying sequana/sequence.py -> build/lib/sequana 2022-11-21T19:08:38,489 copying sequana/running_median.py -> build/lib/sequana 2022-11-21T19:08:38,493 copying sequana/featurecounts.py -> build/lib/sequana 2022-11-21T19:08:38,498 copying sequana/macs3.py -> build/lib/sequana 2022-11-21T19:08:38,502 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2022-11-21T19:08:38,506 copying sequana/itol.py -> build/lib/sequana 2022-11-21T19:08:38,510 copying sequana/krona.py -> build/lib/sequana 2022-11-21T19:08:38,514 copying sequana/ribodesigner.py -> build/lib/sequana 2022-11-21T19:08:38,518 copying sequana/errors.py -> build/lib/sequana 2022-11-21T19:08:38,521 copying sequana/fastqc.py -> build/lib/sequana 2022-11-21T19:08:38,525 copying sequana/lazyimports.py -> build/lib/sequana 2022-11-21T19:08:38,529 copying sequana/sniffer.py -> build/lib/sequana 2022-11-21T19:08:38,532 copying sequana/chipseq.py -> build/lib/sequana 2022-11-21T19:08:38,537 copying sequana/mgi.py -> build/lib/sequana 2022-11-21T19:08:38,540 copying sequana/compare.py -> build/lib/sequana 2022-11-21T19:08:38,545 copying sequana/taxonomy.py -> build/lib/sequana 2022-11-21T19:08:38,549 copying sequana/vcf_filter.py -> build/lib/sequana 2022-11-21T19:08:38,553 copying sequana/misc.py -> build/lib/sequana 2022-11-21T19:08:38,556 copying sequana/mixture.py -> build/lib/sequana 2022-11-21T19:08:38,561 copying sequana/vst.py -> build/lib/sequana 2022-11-21T19:08:38,564 copying sequana/gtf.py -> build/lib/sequana 2022-11-21T19:08:38,567 copying sequana/tools.py -> build/lib/sequana 2022-11-21T19:08:38,572 copying sequana/jsontool.py -> build/lib/sequana 2022-11-21T19:08:38,575 copying sequana/fastq.py -> build/lib/sequana 2022-11-21T19:08:38,580 copying sequana/protein.py -> build/lib/sequana 2022-11-21T19:08:38,583 copying sequana/iuapc.py -> build/lib/sequana 2022-11-21T19:08:38,586 copying sequana/gff3.py -> build/lib/sequana 2022-11-21T19:08:38,591 copying sequana/databases.py -> build/lib/sequana 2022-11-21T19:08:38,595 copying sequana/cigar.py -> build/lib/sequana 2022-11-21T19:08:38,599 copying sequana/demultiplex.py -> build/lib/sequana 2022-11-21T19:08:38,603 copying sequana/pacbio.py -> build/lib/sequana 2022-11-21T19:08:38,609 copying sequana/isoseq.py -> build/lib/sequana 2022-11-21T19:08:38,613 copying sequana/mh.py -> build/lib/sequana 2022-11-21T19:08:38,617 copying sequana/fasta.py -> build/lib/sequana 2022-11-21T19:08:38,621 copying sequana/kegg.py -> build/lib/sequana 2022-11-21T19:08:38,624 copying sequana/canu_scanner.py -> build/lib/sequana 2022-11-21T19:08:38,628 copying sequana/datatools.py -> build/lib/sequana 2022-11-21T19:08:38,631 copying sequana/stats.py -> build/lib/sequana 2022-11-21T19:08:38,634 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2022-11-21T19:08:38,638 copying sequana/criteria.py -> build/lib/sequana 2022-11-21T19:08:38,642 copying sequana/salmon.py -> build/lib/sequana 2022-11-21T19:08:38,646 copying sequana/find_motif.py -> build/lib/sequana 2022-11-21T19:08:38,650 copying sequana/contigs.py -> build/lib/sequana 2022-11-21T19:08:38,654 copying sequana/cpg_islands.py -> build/lib/sequana 2022-11-21T19:08:38,657 copying sequana/bed.py -> build/lib/sequana 2022-11-21T19:08:38,661 copying sequana/rnadiff.py -> build/lib/sequana 2022-11-21T19:08:38,669 creating build/lib/sequana/multiqc 2022-11-21T19:08:38,671 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,675 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,678 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,682 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,686 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,689 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,693 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,696 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,700 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,703 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,707 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,710 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2022-11-21T19:08:38,715 creating build/lib/sequana/plots 2022-11-21T19:08:38,716 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2022-11-21T19:08:38,719 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2022-11-21T19:08:38,723 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2022-11-21T19:08:38,727 creating build/lib/sequana/kraken 2022-11-21T19:08:38,729 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2022-11-21T19:08:38,732 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2022-11-21T19:08:38,736 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2022-11-21T19:08:38,743 creating build/lib/sequana/utils 2022-11-21T19:08:38,745 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2022-11-21T19:08:38,748 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2022-11-21T19:08:38,752 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2022-11-21T19:08:38,755 copying sequana/utils/config.py -> build/lib/sequana/utils 2022-11-21T19:08:38,759 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2022-11-21T19:08:38,762 copying sequana/utils/tree.py -> build/lib/sequana/utils 2022-11-21T19:08:38,767 creating build/lib/sequana/resources 2022-11-21T19:08:38,768 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2022-11-21T19:08:38,773 creating build/lib/sequana/scripts 2022-11-21T19:08:38,774 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2022-11-21T19:08:38,777 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2022-11-21T19:08:38,782 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2022-11-21T19:08:38,786 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2022-11-21T19:08:38,793 creating build/lib/sequana/modules_report 2022-11-21T19:08:38,795 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,798 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,803 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,806 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,810 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,814 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,817 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,821 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,824 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,828 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,832 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,837 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,840 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,844 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,847 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,850 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,854 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,857 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,861 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,864 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,869 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2022-11-21T19:08:38,874 creating build/lib/sequana/rules 2022-11-21T19:08:38,876 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2022-11-21T19:08:38,880 creating build/lib/sequana/enrichment 2022-11-21T19:08:38,882 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2022-11-21T19:08:38,885 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2022-11-21T19:08:38,889 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2022-11-21T19:08:38,894 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2022-11-21T19:08:38,897 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2022-11-21T19:08:38,900 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2022-11-21T19:08:38,904 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2022-11-21T19:08:38,909 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2022-11-21T19:08:38,912 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2022-11-21T19:08:38,919 creating build/lib/sequana/viz 2022-11-21T19:08:38,921 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2022-11-21T19:08:38,925 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2022-11-21T19:08:38,928 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2022-11-21T19:08:38,932 copying sequana/viz/anova.py -> build/lib/sequana/viz 2022-11-21T19:08:38,936 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2022-11-21T19:08:38,939 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2022-11-21T19:08:38,943 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2022-11-21T19:08:38,948 copying sequana/viz/pca.py -> build/lib/sequana/viz 2022-11-21T19:08:38,952 copying sequana/viz/core.py -> build/lib/sequana/viz 2022-11-21T19:08:38,955 copying sequana/viz/mds.py -> build/lib/sequana/viz 2022-11-21T19:08:38,958 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2022-11-21T19:08:38,962 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2022-11-21T19:08:38,967 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2022-11-21T19:08:38,971 copying sequana/viz/venn.py -> build/lib/sequana/viz 2022-11-21T19:08:38,974 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2022-11-21T19:08:38,979 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2022-11-21T19:08:38,982 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2022-11-21T19:08:38,986 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2022-11-21T19:08:38,991 creating build/lib/sequana/resources/examples 2022-11-21T19:08:38,992 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2022-11-21T19:08:38,996 creating build/lib/sequana/resources/css 2022-11-21T19:08:38,997 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2022-11-21T19:08:39,002 creating build/lib/sequana/resources/images 2022-11-21T19:08:39,003 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2022-11-21T19:08:39,007 creating build/lib/sequana/resources/js 2022-11-21T19:08:39,008 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2022-11-21T19:08:39,012 creating build/lib/sequana/resources/data 2022-11-21T19:08:39,014 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2022-11-21T19:08:39,018 creating build/lib/sequana/resources/doc 2022-11-21T19:08:39,019 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2022-11-21T19:08:39,024 creating build/lib/sequana/resources/snpeff 2022-11-21T19:08:39,025 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2022-11-21T19:08:39,029 creating build/lib/sequana/resources/templates 2022-11-21T19:08:39,031 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2022-11-21T19:08:39,035 creating build/lib/sequana/resources/canvas 2022-11-21T19:08:39,036 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2022-11-21T19:08:39,039 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2022-11-21T19:08:39,044 creating build/lib/sequana/resources/testing 2022-11-21T19:08:39,045 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2022-11-21T19:08:39,049 creating build/lib/sequana/resources/doc/rnaseq_0 2022-11-21T19:08:39,051 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2022-11-21T19:08:39,054 creating build/lib/sequana/resources/doc/rnadiff_compare 2022-11-21T19:08:39,056 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2022-11-21T19:08:39,060 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2022-11-21T19:08:39,062 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2022-11-21T19:08:39,065 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-11-21T19:08:39,067 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-11-21T19:08:39,071 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-11-21T19:08:39,072 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-11-21T19:08:39,076 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-11-21T19:08:39,077 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-11-21T19:08:39,084 creating build/lib/sequana/scripts/main 2022-11-21T19:08:39,085 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,089 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,092 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,096 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,099 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,103 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,106 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,111 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,114 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,117 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,121 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,124 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,128 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,133 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,136 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,141 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,144 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,147 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,151 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,154 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,158 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,162 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2022-11-21T19:08:39,167 creating build/lib/sequana/rules/deeptools 2022-11-21T19:08:39,168 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2022-11-21T19:08:39,172 creating build/lib/sequana/rules/Utils 2022-11-21T19:08:39,174 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2022-11-21T19:08:39,178 creating build/lib/sequana/rules/codecs 2022-11-21T19:08:39,179 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2022-11-21T19:08:39,183 creating build/lib/sequana/rules/SnpEff 2022-11-21T19:08:39,185 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2022-11-21T19:08:39,189 creating build/lib/sequana/rules/picard-tools 2022-11-21T19:08:39,190 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2022-11-21T19:08:39,194 creating build/lib/sequana/rules/sambamba 2022-11-21T19:08:39,195 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2022-11-21T19:08:39,199 creating build/lib/sequana/rules/idr 2022-11-21T19:08:39,201 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2022-11-21T19:08:39,205 creating build/lib/sequana/rules/Pacbio 2022-11-21T19:08:39,206 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2022-11-21T19:08:39,630 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2022-11-21T19:08:39,635 copying sequana/rules/README.rst -> build/lib/sequana/rules 2022-11-21T19:08:39,638 creating build/lib/sequana/rules/fastq_screen 2022-11-21T19:08:39,640 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2022-11-21T19:08:39,644 creating build/lib/sequana/rules/fastp 2022-11-21T19:08:39,645 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2022-11-21T19:08:39,649 creating build/lib/sequana/rules/bwa_index 2022-11-21T19:08:39,650 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2022-11-21T19:08:39,655 creating build/lib/sequana/rules/revcomp_rule 2022-11-21T19:08:39,656 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2022-11-21T19:08:39,660 creating build/lib/sequana/rules/spp 2022-11-21T19:08:39,661 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2022-11-21T19:08:39,665 creating build/lib/sequana/rules/multiqc 2022-11-21T19:08:39,667 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2022-11-21T19:08:39,671 creating build/lib/sequana/rules/falco 2022-11-21T19:08:39,673 copying sequana/rules/falco/falco.rules -> build/lib/sequana/rules/falco 2022-11-21T19:08:39,677 creating build/lib/sequana/rules/indel_realigner 2022-11-21T19:08:39,678 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2022-11-21T19:08:39,682 creating build/lib/sequana/rules/salmon_index 2022-11-21T19:08:39,684 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2022-11-21T19:08:39,688 creating build/lib/sequana/rules/pacbio_quality 2022-11-21T19:08:39,689 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2022-11-21T19:08:39,693 creating build/lib/sequana/rules/canu 2022-11-21T19:08:39,695 copying sequana/rules/canu/canu.rules -> build/lib/sequana/rules/canu 2022-11-21T19:08:39,699 creating build/lib/sequana/rules/rulegraph 2022-11-21T19:08:39,701 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2022-11-21T19:08:39,705 creating build/lib/sequana/rules/spikes_counting 2022-11-21T19:08:39,706 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2022-11-21T19:08:39,710 creating build/lib/sequana/rules/bowtie2_index 2022-11-21T19:08:39,712 copying sequana/rules/bowtie2_index/bowtie2_index.rules -> build/lib/sequana/rules/bowtie2_index 2022-11-21T19:08:39,716 creating build/lib/sequana/rules/freebayes_bcf_filter 2022-11-21T19:08:39,717 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2022-11-21T19:08:39,722 creating build/lib/sequana/rules/summary_pipeline 2022-11-21T19:08:39,723 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2022-11-21T19:08:39,727 creating build/lib/sequana/rules/spades 2022-11-21T19:08:39,729 copying sequana/rules/spades/spades.rules -> build/lib/sequana/rules/spades 2022-11-21T19:08:39,733 creating build/lib/sequana/rules/rnaseqc 2022-11-21T19:08:39,734 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2022-11-21T19:08:39,738 creating build/lib/sequana/rules/sequana_coverage 2022-11-21T19:08:39,740 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2022-11-21T19:08:39,744 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-11-21T19:08:39,746 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-11-21T19:08:39,750 creating build/lib/sequana/rules/bwa_bam_to_fastq 2022-11-21T19:08:39,751 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2022-11-21T19:08:39,755 creating build/lib/sequana/rules/freebayes 2022-11-21T19:08:39,756 copying sequana/rules/freebayes/freebayes.rules -> build/lib/sequana/rules/freebayes 2022-11-21T19:08:39,761 creating build/lib/sequana/rules/preSARTools 2022-11-21T19:08:39,762 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2022-11-21T19:08:39,766 creating build/lib/sequana/rules/fastq_screen_report 2022-11-21T19:08:39,768 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2022-11-21T19:08:39,772 creating build/lib/sequana/rules/bam_quality_filter 2022-11-21T19:08:39,774 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2022-11-21T19:08:39,778 creating build/lib/sequana/rules/star_mapping 2022-11-21T19:08:39,779 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2022-11-21T19:08:39,783 creating build/lib/sequana/rules/mapping_analysis 2022-11-21T19:08:39,785 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2022-11-21T19:08:39,789 creating build/lib/sequana/rules/quast 2022-11-21T19:08:39,790 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2022-11-21T19:08:39,794 creating build/lib/sequana/rules/bamCoverage 2022-11-21T19:08:39,796 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2022-11-21T19:08:39,800 creating build/lib/sequana/rules/freebayes_vcf_filter 2022-11-21T19:08:39,801 copying sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/freebayes_vcf_filter 2022-11-21T19:08:39,805 creating build/lib/sequana/rules/extract_fasta_from_bed 2022-11-21T19:08:39,807 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2022-11-21T19:08:39,811 creating build/lib/sequana/rules/fastq_sampling 2022-11-21T19:08:39,813 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2022-11-21T19:08:39,816 creating build/lib/sequana/rules/SARTools 2022-11-21T19:08:39,818 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2022-11-21T19:08:39,823 creating build/lib/sequana/rules/copy_multiple_files 2022-11-21T19:08:39,824 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2022-11-21T19:08:39,828 creating build/lib/sequana/rules/salmon_mapping 2022-11-21T19:08:39,829 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2022-11-21T19:08:39,834 creating build/lib/sequana/rules/multiqc2 2022-11-21T19:08:39,835 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2022-11-21T19:08:39,839 creating build/lib/sequana/rules/tophat_mapping 2022-11-21T19:08:39,841 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2022-11-21T19:08:39,845 creating build/lib/sequana/rules/cutadapt 2022-11-21T19:08:39,846 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2022-11-21T19:08:39,851 creating build/lib/sequana/rules/miRNA_count_dynamic 2022-11-21T19:08:39,852 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2022-11-21T19:08:39,856 creating build/lib/sequana/rules/format_contigs 2022-11-21T19:08:39,858 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2022-11-21T19:08:39,862 creating build/lib/sequana/rules/star_index 2022-11-21T19:08:39,863 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2022-11-21T19:08:39,867 creating build/lib/sequana/rules/igvtools 2022-11-21T19:08:39,868 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2022-11-21T19:08:39,872 creating build/lib/sequana/rules/spades_get_fastq 2022-11-21T19:08:39,874 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2022-11-21T19:08:39,878 creating build/lib/sequana/rules/feature_counts 2022-11-21T19:08:39,879 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2022-11-21T19:08:39,884 creating build/lib/sequana/rules/fastqc 2022-11-21T19:08:39,886 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2022-11-21T19:08:39,889 creating build/lib/sequana/rules/DupRadar 2022-11-21T19:08:39,891 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2022-11-21T19:08:39,895 creating build/lib/sequana/rules/samtools_sort 2022-11-21T19:08:39,896 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2022-11-21T19:08:39,900 creating build/lib/sequana/rules/prokka 2022-11-21T19:08:39,902 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2022-11-21T19:08:39,906 creating build/lib/sequana/rules/samtools_depth 2022-11-21T19:08:39,907 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2022-11-21T19:08:39,911 creating build/lib/sequana/rules/bed_to_gff 2022-11-21T19:08:39,913 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2022-11-21T19:08:39,916 creating build/lib/sequana/rules/dag 2022-11-21T19:08:39,918 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2022-11-21T19:08:39,922 creating build/lib/sequana/rules/deeptools/plotCoverage 2022-11-21T19:08:39,924 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2022-11-21T19:08:39,928 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-11-21T19:08:39,929 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-11-21T19:08:39,934 creating build/lib/sequana/rules/deeptools/multiBamSummary 2022-11-21T19:08:39,935 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2022-11-21T19:08:39,939 creating build/lib/sequana/rules/deeptools/plotCorrelation 2022-11-21T19:08:39,941 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2022-11-21T19:08:39,945 creating build/lib/sequana/rules/multiqc/2.0 2022-11-21T19:08:39,946 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2022-11-21T19:08:39,950 creating build/lib/sequana/rules/kraken 2022-11-21T19:08:39,951 creating build/lib/sequana/rules/kraken/1.1 2022-11-21T19:08:39,953 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2022-11-21T19:08:39,957 creating build/lib/sequana/rules/kraken/1.0 2022-11-21T19:08:39,959 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2022-11-21T19:08:39,963 creating build/lib/sequana/rules/kraken/2.0 2022-11-21T19:08:39,964 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2022-11-21T19:08:39,968 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-11-21T19:08:39,970 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-11-21T19:08:39,974 creating build/lib/sequana/rules/codecs/bz2_to_gz 2022-11-21T19:08:39,976 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2022-11-21T19:08:39,980 creating build/lib/sequana/rules/codecs/gz_to_fastq 2022-11-21T19:08:39,981 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2022-11-21T19:08:39,985 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2022-11-21T19:08:39,987 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2022-11-21T19:08:39,991 creating build/lib/sequana/rules/codecs/gz_to_bz2 2022-11-21T19:08:39,992 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2022-11-21T19:08:39,996 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-11-21T19:08:39,998 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-11-21T19:08:40,002 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2022-11-21T19:08:40,003 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2022-11-21T19:08:40,007 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-11-21T19:08:40,008 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-11-21T19:08:40,013 creating build/lib/sequana/rules/codecs/fastq_to_gz 2022-11-21T19:08:40,014 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2022-11-21T19:08:40,018 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2022-11-21T19:08:40,020 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2022-11-21T19:08:40,024 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2022-11-21T19:08:40,025 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2022-11-21T19:08:40,029 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-11-21T19:08:40,031 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-11-21T19:08:40,035 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2022-11-21T19:08:40,036 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2022-11-21T19:08:40,040 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-11-21T19:08:40,053 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-11-21T19:08:40,057 creating build/lib/sequana/rules/picard-tools/reorderSam 2022-11-21T19:08:40,059 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2022-11-21T19:08:40,063 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-11-21T19:08:40,064 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-11-21T19:08:40,068 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2022-11-21T19:08:40,070 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2022-11-21T19:08:40,074 creating build/lib/sequana/rules/picard-tools/add_read_group 2022-11-21T19:08:40,075 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2022-11-21T19:08:40,079 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-11-21T19:08:40,081 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-11-21T19:08:40,085 creating build/lib/sequana/rules/sambamba/sambamba_filter 2022-11-21T19:08:40,086 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2022-11-21T19:08:40,090 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2022-11-21T19:08:40,092 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2022-11-21T19:08:40,096 creating build/lib/sequana/rules/idr/union_peaks 2022-11-21T19:08:40,097 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2022-11-21T19:08:40,101 creating build/lib/sequana/rules/idr/metrics_peaks 2022-11-21T19:08:40,102 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2022-11-21T19:08:40,106 creating build/lib/sequana/rules/idr/stats_peakCalling 2022-11-21T19:08:40,108 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2022-11-21T19:08:40,112 creating build/lib/sequana/rules/idr/preIDR_dynamic 2022-11-21T19:08:40,113 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2022-11-21T19:08:40,118 creating build/lib/sequana/rules/idr/select_peaks 2022-11-21T19:08:40,119 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2022-11-21T19:08:40,123 creating build/lib/sequana/rules/idr/compute_idr 2022-11-21T19:08:40,125 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2022-11-21T19:08:40,128 creating build/lib/sequana/rules/idr/intersectionApproach 2022-11-21T19:08:40,130 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2022-11-21T19:08:40,134 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-11-21T19:08:40,135 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-11-21T19:08:40,137 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-11-21T19:08:40,141 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-11-21T19:08:40,142 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-11-21T19:08:40,146 creating build/lib/sequana/rules/SnpEff/snpeff 2022-11-21T19:08:40,147 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-11-21T19:08:40,149 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-11-21T19:08:40,153 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-11-21T19:08:40,155 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-11-21T19:08:40,159 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2022-11-21T19:08:40,164 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2022-11-21T19:08:40,170 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2022-11-21T19:08:40,175 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2022-11-21T19:08:40,188 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2022-11-21T19:08:40,192 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2022-11-21T19:08:40,197 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2022-11-21T19:08:40,202 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2022-11-21T19:08:40,208 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2022-11-21T19:08:40,212 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2022-11-21T19:08:40,230 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2022-11-21T19:08:40,237 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,245 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,262 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,267 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,285 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,290 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,299 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,306 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,315 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,329 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,337 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,341 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,345 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2022-11-21T19:08:40,349 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2022-11-21T19:08:40,353 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2022-11-21T19:08:40,358 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2022-11-21T19:08:40,364 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2022-11-21T19:08:40,385 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2022-11-21T19:08:40,396 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2022-11-21T19:08:40,420 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2022-11-21T19:08:40,425 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2022-11-21T19:08:40,435 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2022-11-21T19:08:40,440 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2022-11-21T19:08:40,444 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2022-11-21T19:08:40,448 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2022-11-21T19:08:40,452 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2022-11-21T19:08:40,456 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,460 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,465 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,468 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,489 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,494 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,498 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,502 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,524 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,528 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,531 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,535 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,539 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,543 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,547 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,552 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,556 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,559 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2022-11-21T19:08:40,712 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-21T19:08:40,712 setuptools.SetuptoolsDeprecationWarning, 2022-11-21T19:08:40,772 installing to build/bdist.linux-armv7l/wheel 2022-11-21T19:08:40,773 running install 2022-11-21T19:08:40,834 running install_lib 2022-11-21T19:08:40,897 creating build/bdist.linux-armv7l 2022-11-21T19:08:40,898 creating build/bdist.linux-armv7l/wheel 2022-11-21T19:08:40,903 creating build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:40,905 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:40,910 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:40,915 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:40,922 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:40,926 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:40,930 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:40,934 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:40,938 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,939 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,944 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,947 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,951 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,955 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,959 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,963 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,967 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,970 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,974 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,979 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,982 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,985 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-11-21T19:08:40,989 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:40,998 creating build/bdist.linux-armv7l/wheel/sequana/plots 2022-11-21T19:08:40,999 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-11-21T19:08:41,002 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-11-21T19:08:41,006 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-11-21T19:08:41,011 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,015 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,018 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,022 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,027 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2022-11-21T19:08:41,029 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-11-21T19:08:41,032 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-11-21T19:08:41,036 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-11-21T19:08:41,045 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,049 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,054 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,058 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,062 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,068 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,072 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,077 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,081 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,085 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,089 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,093 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,097 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,101 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,105 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,109 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,112 copying build/lib/sequana/chipseq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,117 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,121 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,126 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,132 creating build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-21T19:08:41,133 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-21T19:08:41,136 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-21T19:08:41,141 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-21T19:08:41,144 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-21T19:08:41,148 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-21T19:08:41,151 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-11-21T19:08:41,155 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,159 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,163 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,167 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,171 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,174 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,178 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,182 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,188 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,191 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,195 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,200 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,206 creating build/bdist.linux-armv7l/wheel/sequana/resources 2022-11-21T19:08:41,207 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2022-11-21T19:08:41,211 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-21T19:08:41,213 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-21T19:08:41,217 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-21T19:08:41,220 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-21T19:08:41,223 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-11-21T19:08:41,229 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-21T19:08:41,231 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-21T19:08:41,234 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-21T19:08:41,246 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-21T19:08:41,250 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-21T19:08:41,253 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-21T19:08:41,257 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-11-21T19:08:41,263 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-21T19:08:41,264 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-21T19:08:41,268 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-21T19:08:41,271 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-21T19:08:41,275 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-11-21T19:08:41,283 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,285 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,293 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,296 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,313 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,317 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,335 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,339 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,347 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,353 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,361 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,369 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,374 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,377 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,381 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-11-21T19:08:41,385 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,387 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,391 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,409 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,412 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,416 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,426 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,448 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,453 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,457 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-11-21T19:08:41,474 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-11-21T19:08:41,476 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-11-21T19:08:41,481 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2022-11-21T19:08:41,485 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2022-11-21T19:08:41,488 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2022-11-21T19:08:41,494 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-11-21T19:08:41,496 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-11-21T19:08:41,501 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-11-21T19:08:41,503 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-11-21T19:08:41,508 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-11-21T19:08:41,511 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-11-21T19:08:41,514 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2022-11-21T19:08:41,519 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-11-21T19:08:41,521 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-11-21T19:08:41,527 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-11-21T19:08:41,529 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-11-21T19:08:41,534 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-11-21T19:08:41,541 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-21T19:08:41,543 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-21T19:08:41,547 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-21T19:08:41,552 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-21T19:08:41,555 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-21T19:08:41,559 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-11-21T19:08:41,565 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-11-21T19:08:41,567 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-11-21T19:08:41,571 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-11-21T19:08:41,576 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,578 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,582 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,586 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,590 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,611 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,617 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,621 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,625 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,649 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,653 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,657 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,661 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,665 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,669 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,673 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,678 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,681 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,684 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,688 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-11-21T19:08:41,725 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,730 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-21T19:08:41,732 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-21T19:08:41,734 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-21T19:08:41,739 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-21T19:08:41,745 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,746 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,750 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,752 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,755 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,758 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,762 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,765 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,769 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,772 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,776 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,779 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,782 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,786 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,790 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,793 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,797 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,800 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,804 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,807 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,811 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,815 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,819 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-11-21T19:08:41,823 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-11-21T19:08:41,827 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,831 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,838 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,843 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:41,849 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,851 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,856 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,862 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,866 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,871 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,876 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,881 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,885 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,889 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,893 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,897 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,902 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,906 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,911 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,914 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,917 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,921 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,925 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,929 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,932 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,936 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-11-21T19:08:41,943 creating build/bdist.linux-armv7l/wheel/sequana/rules 2022-11-21T19:08:41,946 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-11-21T19:08:41,947 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-11-21T19:08:41,951 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-11-21T19:08:41,953 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-11-21T19:08:41,957 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-11-21T19:08:41,959 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-11-21T19:08:41,963 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-11-21T19:08:41,965 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-11-21T19:08:41,969 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-11-21T19:08:41,971 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-11-21T19:08:41,974 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-11-21T19:08:41,978 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-11-21T19:08:41,979 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-11-21T19:08:41,984 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2022-11-21T19:08:41,985 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2022-11-21T19:08:41,989 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-11-21T19:08:41,991 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-11-21T19:08:41,995 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2022-11-21T19:08:41,997 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2022-11-21T19:08:42,001 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-11-21T19:08:42,003 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-11-21T19:08:42,007 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-11-21T19:08:42,009 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-11-21T19:08:42,013 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-11-21T19:08:42,015 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-11-21T19:08:42,019 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-11-21T19:08:42,021 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-11-21T19:08:42,025 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco 2022-11-21T19:08:42,027 copying build/lib/sequana/rules/falco/falco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco 2022-11-21T19:08:42,032 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-11-21T19:08:42,033 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-11-21T19:08:42,038 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-11-21T19:08:42,039 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-11-21T19:08:42,044 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-11-21T19:08:42,045 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-11-21T19:08:42,050 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2022-11-21T19:08:42,053 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-11-21T19:08:42,054 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-11-21T19:08:42,060 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-11-21T19:08:42,062 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-11-21T19:08:42,067 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-11-21T19:08:42,069 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-11-21T19:08:42,074 creating build/bdist.linux-armv7l/wheel/sequana/rules/canu 2022-11-21T19:08:42,076 copying build/lib/sequana/rules/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/canu 2022-11-21T19:08:42,082 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-11-21T19:08:42,084 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-11-21T19:08:42,088 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-11-21T19:08:42,094 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-11-21T19:08:42,096 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-11-21T19:08:42,101 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2022-11-21T19:08:42,103 copying build/lib/sequana/rules/bowtie2_index/bowtie2_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2022-11-21T19:08:42,108 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-11-21T19:08:42,112 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-11-21T19:08:42,114 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-11-21T19:08:42,118 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-11-21T19:08:42,123 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2022-11-21T19:08:42,125 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2022-11-21T19:08:42,130 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-11-21T19:08:42,132 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-11-21T19:08:42,138 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-11-21T19:08:42,140 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-11-21T19:08:42,145 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2022-11-21T19:08:42,146 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2022-11-21T19:08:42,151 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-11-21T19:08:42,152 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-11-21T19:08:42,157 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2022-11-21T19:08:42,158 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2022-11-21T19:08:42,163 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-11-21T19:08:42,165 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-11-21T19:08:42,169 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-11-21T19:08:42,170 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-11-21T19:08:42,175 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-11-21T19:08:42,177 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-11-21T19:08:42,181 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-11-21T19:08:42,183 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-11-21T19:08:42,187 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-11-21T19:08:42,189 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-11-21T19:08:42,193 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-11-21T19:08:42,195 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-11-21T19:08:42,199 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-11-21T19:08:42,201 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-11-21T19:08:42,205 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-11-21T19:08:42,207 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-11-21T19:08:42,212 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades 2022-11-21T19:08:42,214 copying build/lib/sequana/rules/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades 2022-11-21T19:08:42,219 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-11-21T19:08:42,221 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-11-21T19:08:42,226 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2022-11-21T19:08:42,229 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2022-11-21T19:08:42,235 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-11-21T19:08:42,236 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-11-21T19:08:42,241 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-11-21T19:08:42,242 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-11-21T19:08:42,247 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-11-21T19:08:42,248 copying build/lib/sequana/rules/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-11-21T19:08:42,253 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2022-11-21T19:08:42,255 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2022-11-21T19:08:42,260 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-11-21T19:08:42,262 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-11-21T19:08:42,267 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-11-21T19:08:42,270 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-11-21T19:08:42,273 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-11-21T19:08:42,278 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-11-21T19:08:42,280 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-11-21T19:08:42,286 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2022-11-21T19:08:42,289 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-11-21T19:08:42,291 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-11-21T19:08:42,297 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-11-21T19:08:42,299 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-11-21T19:08:42,304 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-11-21T19:08:42,306 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-11-21T19:08:42,311 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-11-21T19:08:42,314 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-11-21T19:08:42,320 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-11-21T19:08:42,322 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-11-21T19:08:42,326 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2022-11-21T19:08:42,328 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2022-11-21T19:08:42,332 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2022-11-21T19:08:42,334 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2022-11-21T19:08:42,338 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2022-11-21T19:08:42,340 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2022-11-21T19:08:42,344 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-11-21T19:08:42,346 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-11-21T19:08:42,350 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-11-21T19:08:42,351 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-11-21T19:08:42,356 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-11-21T19:08:42,357 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-11-21T19:08:42,362 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-11-21T19:08:42,363 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-11-21T19:08:42,368 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-11-21T19:08:42,369 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-11-21T19:08:42,374 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-11-21T19:08:42,376 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-11-21T19:08:42,380 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-11-21T19:08:42,382 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-11-21T19:08:42,386 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-11-21T19:08:42,387 copying build/lib/sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-11-21T19:08:42,392 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-11-21T19:08:42,393 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-11-21T19:08:42,398 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-11-21T19:08:42,399 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-11-21T19:08:42,404 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2022-11-21T19:08:42,405 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2022-11-21T19:08:42,410 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-11-21T19:08:42,412 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-11-21T19:08:42,416 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-11-21T19:08:42,418 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-11-21T19:08:42,422 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-11-21T19:08:42,423 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-11-21T19:08:42,427 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-11-21T19:08:42,429 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-11-21T19:08:42,434 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-11-21T19:08:42,435 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-11-21T19:08:42,440 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-11-21T19:08:42,441 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-11-21T19:08:42,446 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-11-21T19:08:42,447 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-11-21T19:08:42,452 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-11-21T19:08:42,453 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-11-21T19:08:42,458 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-11-21T19:08:42,460 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-11-21T19:08:42,465 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-11-21T19:08:42,466 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-11-21T19:08:42,471 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2022-11-21T19:08:42,473 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2022-11-21T19:08:42,477 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-11-21T19:08:42,479 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-11-21T19:08:42,484 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-11-21T19:08:42,485 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-11-21T19:08:42,489 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-11-21T19:08:42,490 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-11-21T19:08:42,495 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-11-21T19:08:42,496 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-11-21T19:08:42,501 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-11-21T19:08:42,503 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-11-21T19:08:42,507 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-11-21T19:08:42,509 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-11-21T19:08:42,514 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-11-21T19:08:42,516 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-11-21T19:08:42,520 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-11-21T19:08:42,522 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-11-21T19:08:42,526 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-11-21T19:08:42,529 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-11-21T19:08:42,534 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-11-21T19:08:42,535 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-11-21T19:08:42,540 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2022-11-21T19:08:42,541 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2022-11-21T19:08:42,546 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-11-21T19:08:42,547 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-11-21T19:08:42,552 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-11-21T19:08:42,553 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-11-21T19:08:42,557 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-11-21T19:08:42,559 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-11-21T19:08:42,563 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-11-21T19:08:42,564 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-11-21T19:08:42,569 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-11-21T19:08:42,570 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-11-21T19:08:42,574 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-11-21T19:08:42,575 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-11-21T19:08:42,580 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-11-21T19:08:42,581 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-11-21T19:08:42,585 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-11-21T19:08:42,587 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-11-21T19:08:42,590 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,594 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,598 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,602 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,606 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,608 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,611 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,615 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,620 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,623 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,626 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,632 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,637 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,641 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-11-21T19:08:42,646 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,650 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,655 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,658 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,662 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,666 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,670 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,673 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,679 creating build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,680 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,685 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,689 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,692 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,695 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,698 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,702 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,705 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,709 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,713 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,716 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,719 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,724 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,727 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,731 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,736 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,739 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,743 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-11-21T19:08:42,746 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-11-21T19:08:42,752 running install_egg_info 2022-11-21T19:08:42,901 running egg_info 2022-11-21T19:08:42,958 writing sequana.egg-info/PKG-INFO 2022-11-21T19:08:42,963 writing dependency_links to sequana.egg-info/dependency_links.txt 2022-11-21T19:08:42,969 writing entry points to sequana.egg-info/entry_points.txt 2022-11-21T19:08:42,972 writing requirements to sequana.egg-info/requires.txt 2022-11-21T19:08:42,974 writing top-level names to sequana.egg-info/top_level.txt 2022-11-21T19:08:43,468 reading manifest file 'sequana.egg-info/SOURCES.txt' 2022-11-21T19:08:43,495 reading manifest template 'MANIFEST.in' 2022-11-21T19:08:43,502 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-11-21T19:08:43,506 warning: no previously-included files matching '*pyc' found under directory '*' 2022-11-21T19:08:44,656 warning: no files found matching 'test/requirements*txt' 2022-11-21T19:08:44,660 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-11-21T19:08:44,664 warning: no previously-included files matching '*' found under directory 'test' 2022-11-21T19:08:44,667 warning: no previously-included files matching '*' found under directory 'doc' 2022-11-21T19:08:44,670 warning: no previously-included files found matching 'sequana/rm2.py' 2022-11-21T19:08:44,671 adding license file 'LICENSE' 2022-11-21T19:08:44,727 writing manifest file 'sequana.egg-info/SOURCES.txt' 2022-11-21T19:08:44,731 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.14.5-py3.7.egg-info 2022-11-21T19:08:44,761 running install_scripts 2022-11-21T19:08:45,061 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-11-21T19:08:45,071 creating build/bdist.linux-armv7l/wheel/sequana-0.14.5.dist-info/WHEEL 2022-11-21T19:08:45,076 creating '/tmp/pip-wheel-av1nn0e6/sequana-0.14.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-21T19:08:45,082 adding 'sequana/__init__.py' 2022-11-21T19:08:45,086 adding 'sequana/assembly.py' 2022-11-21T19:08:45,105 adding 'sequana/bamtools.py' 2022-11-21T19:08:45,110 adding 'sequana/bed.py' 2022-11-21T19:08:45,133 adding 'sequana/bedtools.py' 2022-11-21T19:08:45,139 adding 'sequana/canu_scanner.py' 2022-11-21T19:08:45,149 adding 'sequana/chipseq.py' 2022-11-21T19:08:45,153 adding 'sequana/cigar.py' 2022-11-21T19:08:45,156 adding 'sequana/cnv.py' 2022-11-21T19:08:45,161 adding 'sequana/compare.py' 2022-11-21T19:08:45,165 adding 'sequana/contigs.py' 2022-11-21T19:08:45,170 adding 'sequana/coverage.py' 2022-11-21T19:08:45,172 adding 'sequana/cpg_islands.py' 2022-11-21T19:08:45,175 adding 'sequana/criteria.py' 2022-11-21T19:08:45,181 adding 'sequana/databases.py' 2022-11-21T19:08:45,184 adding 'sequana/datatools.py' 2022-11-21T19:08:45,187 adding 'sequana/demultiplex.py' 2022-11-21T19:08:45,189 adding 'sequana/errors.py' 2022-11-21T19:08:45,194 adding 'sequana/fasta.py' 2022-11-21T19:08:45,206 adding 'sequana/fastq.py' 2022-11-21T19:08:45,210 adding 'sequana/fastqc.py' 2022-11-21T19:08:45,215 adding 'sequana/featurecounts.py' 2022-11-21T19:08:45,219 adding 'sequana/find_motif.py' 2022-11-21T19:08:45,223 adding 'sequana/freebayes_bcf_filter.py' 2022-11-21T19:08:45,227 adding 'sequana/freebayes_vcf_filter.py' 2022-11-21T19:08:45,230 adding 'sequana/genbank.py' 2022-11-21T19:08:45,237 adding 'sequana/gff3.py' 2022-11-21T19:08:45,240 adding 'sequana/gtf.py' 2022-11-21T19:08:45,244 adding 'sequana/iem.py' 2022-11-21T19:08:45,251 adding 'sequana/isoseq.py' 2022-11-21T19:08:45,255 adding 'sequana/itol.py' 2022-11-21T19:08:45,258 adding 'sequana/iuapc.py' 2022-11-21T19:08:45,260 adding 'sequana/jsontool.py' 2022-11-21T19:08:45,263 adding 'sequana/kegg.py' 2022-11-21T19:08:45,265 adding 'sequana/kmer.py' 2022-11-21T19:08:45,267 adding 'sequana/krona.py' 2022-11-21T19:08:45,270 adding 'sequana/lazy.py' 2022-11-21T19:08:45,273 adding 'sequana/lazyimports.py' 2022-11-21T19:08:45,276 adding 'sequana/macs3.py' 2022-11-21T19:08:45,278 adding 'sequana/mgi.py' 2022-11-21T19:08:45,281 adding 'sequana/mh.py' 2022-11-21T19:08:45,284 adding 'sequana/misc.py' 2022-11-21T19:08:45,288 adding 'sequana/mixture.py' 2022-11-21T19:08:45,299 adding 'sequana/pacbio.py' 2022-11-21T19:08:45,304 adding 'sequana/pacbio_amplicon.py' 2022-11-21T19:08:45,307 adding 'sequana/phred.py' 2022-11-21T19:08:45,309 adding 'sequana/protein.py' 2022-11-21T19:08:45,314 adding 'sequana/ribodesigner.py' 2022-11-21T19:08:45,328 adding 'sequana/rnadiff.py' 2022-11-21T19:08:45,332 adding 'sequana/running_median.py' 2022-11-21T19:08:45,336 adding 'sequana/salmon.py' 2022-11-21T19:08:45,345 adding 'sequana/sequence.py' 2022-11-21T19:08:45,348 adding 'sequana/sniffer.py' 2022-11-21T19:08:45,352 adding 'sequana/snpeff.py' 2022-11-21T19:08:45,355 adding 'sequana/stats.py' 2022-11-21T19:08:45,358 adding 'sequana/summary.py' 2022-11-21T19:08:45,363 adding 'sequana/taxonomy.py' 2022-11-21T19:08:45,369 adding 'sequana/tools.py' 2022-11-21T19:08:45,373 adding 'sequana/trf.py' 2022-11-21T19:08:45,378 adding 'sequana/vcf_filter.py' 2022-11-21T19:08:45,381 adding 'sequana/vcftools.py' 2022-11-21T19:08:45,384 adding 'sequana/vst.py' 2022-11-21T19:08:45,387 adding 'sequana/enrichment/__init__.py' 2022-11-21T19:08:45,389 adding 'sequana/enrichment/gsea.py' 2022-11-21T19:08:45,396 adding 'sequana/enrichment/kegg.py' 2022-11-21T19:08:45,399 adding 'sequana/enrichment/mart.py' 2022-11-21T19:08:45,402 adding 'sequana/enrichment/ontology.py' 2022-11-21T19:08:45,407 adding 'sequana/enrichment/panther.py' 2022-11-21T19:08:45,412 adding 'sequana/enrichment/plot_go_terms.py' 2022-11-21T19:08:45,416 adding 'sequana/enrichment/quickgo.py' 2022-11-21T19:08:45,420 adding 'sequana/enrichment/uniprot_enrichment.py' 2022-11-21T19:08:45,423 adding 'sequana/kraken/__init__.py' 2022-11-21T19:08:45,437 adding 'sequana/kraken/analysis.py' 2022-11-21T19:08:45,442 adding 'sequana/kraken/multikraken.py' 2022-11-21T19:08:45,445 adding 'sequana/modules_report/__init__.py' 2022-11-21T19:08:45,447 adding 'sequana/modules_report/bamqc.py' 2022-11-21T19:08:45,451 adding 'sequana/modules_report/base_module.py' 2022-11-21T19:08:45,454 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2022-11-21T19:08:45,461 adding 'sequana/modules_report/coverage.py' 2022-11-21T19:08:45,468 adding 'sequana/modules_report/cutadapt.py' 2022-11-21T19:08:45,471 adding 'sequana/modules_report/fastq_stats.py' 2022-11-21T19:08:45,474 adding 'sequana/modules_report/fastqc.py' 2022-11-21T19:08:45,477 adding 'sequana/modules_report/joint_calling.py' 2022-11-21T19:08:45,480 adding 'sequana/modules_report/kegg_enrichment.py' 2022-11-21T19:08:45,484 adding 'sequana/modules_report/kraken.py' 2022-11-21T19:08:45,488 adding 'sequana/modules_report/multi_summary.py' 2022-11-21T19:08:45,491 adding 'sequana/modules_report/pacbio_input_bam.py' 2022-11-21T19:08:45,495 adding 'sequana/modules_report/panther_enrichment.py' 2022-11-21T19:08:45,499 adding 'sequana/modules_report/phix.py' 2022-11-21T19:08:45,501 adding 'sequana/modules_report/quast.py' 2022-11-21T19:08:45,507 adding 'sequana/modules_report/rnadiff.py' 2022-11-21T19:08:45,511 adding 'sequana/modules_report/summary.py' 2022-11-21T19:08:45,513 adding 'sequana/modules_report/trf.py' 2022-11-21T19:08:45,517 adding 'sequana/modules_report/uniprot_enrichment.py' 2022-11-21T19:08:45,520 adding 'sequana/modules_report/variant_calling.py' 2022-11-21T19:08:45,523 adding 'sequana/multiqc/__init__.py' 2022-11-21T19:08:45,526 adding 'sequana/multiqc/bamtools_stats.py' 2022-11-21T19:08:45,529 adding 'sequana/multiqc/config.py' 2022-11-21T19:08:45,532 adding 'sequana/multiqc/coverage.py' 2022-11-21T19:08:45,536 adding 'sequana/multiqc/isoseq.py' 2022-11-21T19:08:45,539 adding 'sequana/multiqc/isoseq_qc.py' 2022-11-21T19:08:45,542 adding 'sequana/multiqc/kraken.py' 2022-11-21T19:08:45,545 adding 'sequana/multiqc/laa.py' 2022-11-21T19:08:45,548 adding 'sequana/multiqc/multiqc_config.yaml' 2022-11-21T19:08:45,551 adding 'sequana/multiqc/pacbio_amplicon.py' 2022-11-21T19:08:45,554 adding 'sequana/multiqc/pacbio_qc.py' 2022-11-21T19:08:45,557 adding 'sequana/multiqc/plots.py' 2022-11-21T19:08:45,560 adding 'sequana/multiqc/quality_control.py' 2022-11-21T19:08:45,562 adding 'sequana/plots/__init__.py' 2022-11-21T19:08:45,565 adding 'sequana/plots/canvasjs_base.py' 2022-11-21T19:08:45,569 adding 'sequana/plots/canvasjs_linegraph.py' 2022-11-21T19:08:45,571 adding 'sequana/resources/__init__.py' 2022-11-21T19:08:45,574 adding 'sequana/resources/canvas/__init__.py' 2022-11-21T19:08:45,577 adding 'sequana/resources/canvas/bar.py' 2022-11-21T19:08:45,579 adding 'sequana/resources/css/__init__.py' 2022-11-21T19:08:45,603 adding 'sequana/resources/css/bootstrap.min.css' 2022-11-21T19:08:45,608 adding 'sequana/resources/css/buttons.dataTables.min.css' 2022-11-21T19:08:45,612 adding 'sequana/resources/css/jquery.dataTables.min.css' 2022-11-21T19:08:45,615 adding 'sequana/resources/css/jquery.dropdown.min.css' 2022-11-21T19:08:45,617 adding 'sequana/resources/css/report.css' 2022-11-21T19:08:45,649 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2022-11-21T19:08:45,682 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2022-11-21T19:08:45,687 adding 'sequana/resources/data/README.rst' 2022-11-21T19:08:45,689 adding 'sequana/resources/data/__init__.py' 2022-11-21T19:08:45,832 adding 'sequana/resources/data/kegg.csv' 2022-11-21T19:08:45,858 adding 'sequana/resources/data/measles.fa' 2022-11-21T19:08:45,862 adding 'sequana/resources/data/panther.csv' 2022-11-21T19:08:45,867 adding 'sequana/resources/data/phiX174.fa' 2022-11-21T19:08:46,014 adding 'sequana/resources/data/virus.bed' 2022-11-21T19:08:46,023 adding 'sequana/resources/doc/__init__.py' 2022-11-21T19:08:46,026 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2022-11-21T19:08:46,028 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2022-11-21T19:08:46,031 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2022-11-21T19:08:46,034 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2022-11-21T19:08:46,036 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2022-11-21T19:08:46,039 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2022-11-21T19:08:46,042 adding 'sequana/resources/examples/README.rst' 2022-11-21T19:08:46,044 adding 'sequana/resources/examples/__init__.py' 2022-11-21T19:08:46,049 adding 'sequana/resources/examples/test.fastq.gz' 2022-11-21T19:08:46,052 adding 'sequana/resources/examples/test_kraken.out' 2022-11-21T19:08:46,064 adding 'sequana/resources/images/Institut_Pasteur.png' 2022-11-21T19:08:46,067 adding 'sequana/resources/images/__init__.py' 2022-11-21T19:08:46,070 adding 'sequana/resources/images/no_data.jpg' 2022-11-21T19:08:46,073 adding 'sequana/resources/images/no_data.png' 2022-11-21T19:08:46,076 adding 'sequana/resources/js/__init__.py' 2022-11-21T19:08:46,086 adding 'sequana/resources/js/bootstrap.min.js' 2022-11-21T19:08:46,092 adding 'sequana/resources/js/buttons.html5.min.js' 2022-11-21T19:08:46,095 adding 'sequana/resources/js/buttons.print.min.js' 2022-11-21T19:08:46,149 adding 'sequana/resources/js/canvasjs.min.js' 2022-11-21T19:08:46,159 adding 'sequana/resources/js/dataTables.buttons.min.js' 2022-11-21T19:08:46,259 adding 'sequana/resources/js/jquery-2.1.1.js' 2022-11-21T19:08:46,293 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2022-11-21T19:08:46,324 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2022-11-21T19:08:46,355 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2022-11-21T19:08:46,385 adding 'sequana/resources/js/jquery.dataTables.min.js' 2022-11-21T19:08:46,389 adding 'sequana/resources/js/jquery.dropdown.min.js' 2022-11-21T19:08:46,391 adding 'sequana/resources/js/jquery.tocPlugin.js' 2022-11-21T19:08:46,396 adding 'sequana/resources/js/papaparse.min.js' 2022-11-21T19:08:46,399 adding 'sequana/resources/snpeff/__init__.py' 2022-11-21T19:08:46,403 adding 'sequana/resources/snpeff/snpEff.config' 2022-11-21T19:08:46,406 adding 'sequana/resources/templates/__init__.py' 2022-11-21T19:08:46,408 adding 'sequana/resources/templates/base.html' 2022-11-21T19:08:46,411 adding 'sequana/resources/templates/joint_calling.html' 2022-11-21T19:08:46,414 adding 'sequana/resources/templates/rnadiff_light_template.R' 2022-11-21T19:08:46,416 adding 'sequana/resources/templates/standard.html' 2022-11-21T19:08:46,419 adding 'sequana/resources/testing/README.rst' 2022-11-21T19:08:46,421 adding 'sequana/resources/testing/__init__.py' 2022-11-21T19:08:46,424 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2022-11-21T19:08:46,442 adding 'sequana/resources/testing/test.fasta' 2022-11-21T19:08:46,473 adding 'sequana/resources/testing/test_blast_ebi.xml' 2022-11-21T19:08:46,484 adding 'sequana/resources/testing/test_blast_local.xml' 2022-11-21T19:08:46,564 adding 'sequana/resources/testing/test_coverage.csv' 2022-11-21T19:08:46,573 adding 'sequana/resources/testing/test_dag.ann.dot' 2022-11-21T19:08:46,576 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2022-11-21T19:08:46,578 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2022-11-21T19:08:46,580 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2022-11-21T19:08:46,582 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2022-11-21T19:08:46,584 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2022-11-21T19:08:46,587 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2022-11-21T19:08:46,589 adding 'sequana/resources/testing/test_index_mapper.csv' 2022-11-21T19:08:46,591 adding 'sequana/resources/testing/test_kraken.out.summary' 2022-11-21T19:08:46,593 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2022-11-21T19:08:47,148 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2022-11-21T19:08:47,164 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2022-11-21T19:08:47,167 adding 'sequana/rules/README.rst' 2022-11-21T19:08:47,169 adding 'sequana/rules/__init__.py' 2022-11-21T19:08:47,172 adding 'sequana/rules/DupRadar/DupRadar.rules' 2022-11-21T19:08:47,175 adding 'sequana/rules/Pacbio/__init__.py' 2022-11-21T19:08:47,178 adding 'sequana/rules/SARTools/SARTools.rules' 2022-11-21T19:08:47,181 adding 'sequana/rules/SnpEff/__init__.py' 2022-11-21T19:08:47,185 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2022-11-21T19:08:47,188 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2022-11-21T19:08:47,192 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2022-11-21T19:08:47,196 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2022-11-21T19:08:47,199 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2022-11-21T19:08:47,202 adding 'sequana/rules/Utils/__init__.py' 2022-11-21T19:08:47,205 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2022-11-21T19:08:47,208 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2022-11-21T19:08:47,211 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2022-11-21T19:08:47,214 adding 'sequana/rules/bowtie2_index/bowtie2_index.rules' 2022-11-21T19:08:47,217 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2022-11-21T19:08:47,220 adding 'sequana/rules/bwa_index/bwa_index.rules' 2022-11-21T19:08:47,224 adding 'sequana/rules/canu/canu.rules' 2022-11-21T19:08:47,227 adding 'sequana/rules/codecs/__init__.py' 2022-11-21T19:08:47,230 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2022-11-21T19:08:47,233 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2022-11-21T19:08:47,236 adding 'sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules' 2022-11-21T19:08:47,239 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2022-11-21T19:08:47,242 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2022-11-21T19:08:47,245 adding 'sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules' 2022-11-21T19:08:47,249 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2022-11-21T19:08:47,252 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2022-11-21T19:08:47,255 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2022-11-21T19:08:47,258 adding 'sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules' 2022-11-21T19:08:47,261 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2022-11-21T19:08:47,264 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2022-11-21T19:08:47,267 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2022-11-21T19:08:47,270 adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' 2022-11-21T19:08:47,274 adding 'sequana/rules/cutadapt/cutadapt.rules' 2022-11-21T19:08:47,277 adding 'sequana/rules/dag/dag.rules' 2022-11-21T19:08:47,280 adding 'sequana/rules/deeptools/__init__.py' 2022-11-21T19:08:47,283 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2022-11-21T19:08:47,287 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2022-11-21T19:08:47,290 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2022-11-21T19:08:47,293 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2022-11-21T19:08:47,296 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2022-11-21T19:08:47,299 adding 'sequana/rules/falco/falco.rules' 2022-11-21T19:08:47,303 adding 'sequana/rules/fastp/fastp.rules' 2022-11-21T19:08:47,306 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2022-11-21T19:08:47,309 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2022-11-21T19:08:47,313 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2022-11-21T19:08:47,316 adding 'sequana/rules/fastqc/fastqc.rules' 2022-11-21T19:08:47,319 adding 'sequana/rules/feature_counts/feature_counts.rules' 2022-11-21T19:08:47,322 adding 'sequana/rules/format_contigs/format_contigs.rules' 2022-11-21T19:08:47,325 adding 'sequana/rules/freebayes/freebayes.rules' 2022-11-21T19:08:47,328 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2022-11-21T19:08:47,332 adding 'sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules' 2022-11-21T19:08:47,335 adding 'sequana/rules/idr/__init__.py' 2022-11-21T19:08:47,338 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2022-11-21T19:08:47,341 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2022-11-21T19:08:47,345 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2022-11-21T19:08:47,349 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2022-11-21T19:08:47,352 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2022-11-21T19:08:47,355 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2022-11-21T19:08:47,359 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2022-11-21T19:08:47,362 adding 'sequana/rules/igvtools/igvtools.rules' 2022-11-21T19:08:47,365 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2022-11-21T19:08:47,368 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2022-11-21T19:08:47,372 adding 'sequana/rules/kraken/1.0/kraken.rules' 2022-11-21T19:08:47,376 adding 'sequana/rules/kraken/1.1/kraken.rules' 2022-11-21T19:08:47,379 adding 'sequana/rules/kraken/2.0/kraken.rules' 2022-11-21T19:08:47,383 adding 'sequana/rules/mapping_analysis/mapping_analysis.rules' 2022-11-21T19:08:47,386 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2022-11-21T19:08:47,389 adding 'sequana/rules/multiqc/multiqc.rules' 2022-11-21T19:08:47,393 adding 'sequana/rules/multiqc/2.0/multiqc.rules' 2022-11-21T19:08:47,396 adding 'sequana/rules/multiqc2/multiqc2.rules' 2022-11-21T19:08:47,399 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2022-11-21T19:08:47,402 adding 'sequana/rules/picard-tools/__init__.py' 2022-11-21T19:08:47,405 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2022-11-21T19:08:47,408 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2022-11-21T19:08:47,411 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2022-11-21T19:08:47,414 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2022-11-21T19:08:47,417 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2022-11-21T19:08:47,421 adding 'sequana/rules/preSARTools/preSARTools.rules' 2022-11-21T19:08:47,424 adding 'sequana/rules/prokka/prokka.rules' 2022-11-21T19:08:47,427 adding 'sequana/rules/quast/quast.rules' 2022-11-21T19:08:47,430 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2022-11-21T19:08:47,434 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2022-11-21T19:08:47,437 adding 'sequana/rules/rulegraph/rulegraph.rules' 2022-11-21T19:08:47,440 adding 'sequana/rules/salmon_index/salmon_index.rules' 2022-11-21T19:08:47,443 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2022-11-21T19:08:47,446 adding 'sequana/rules/sambamba/__init__.py' 2022-11-21T19:08:47,449 adding 'sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules' 2022-11-21T19:08:47,452 adding 'sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules' 2022-11-21T19:08:47,456 adding 'sequana/rules/samtools_depth/samtools_depth.rules' 2022-11-21T19:08:47,459 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2022-11-21T19:08:47,462 adding 'sequana/rules/sequana_coverage/sequana_coverage.rules' 2022-11-21T19:08:47,466 adding 'sequana/rules/spades/spades.rules' 2022-11-21T19:08:47,469 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2022-11-21T19:08:47,473 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2022-11-21T19:08:47,476 adding 'sequana/rules/spp/spp.rules' 2022-11-21T19:08:47,479 adding 'sequana/rules/star_index/star_index.rules' 2022-11-21T19:08:47,483 adding 'sequana/rules/star_mapping/star_mapping.rules' 2022-11-21T19:08:47,486 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2022-11-21T19:08:47,489 adding 'sequana/rules/tophat_mapping/tophat_mapping.rules' 2022-11-21T19:08:47,492 adding 'sequana/scripts/__init__.py' 2022-11-21T19:08:47,498 adding 'sequana/scripts/coverage.py' 2022-11-21T19:08:47,503 adding 'sequana/scripts/substractor.py' 2022-11-21T19:08:47,507 adding 'sequana/scripts/taxonomy.py' 2022-11-21T19:08:47,510 adding 'sequana/scripts/main/__init__.py' 2022-11-21T19:08:47,513 adding 'sequana/scripts/main/biomart.py' 2022-11-21T19:08:47,516 adding 'sequana/scripts/main/enrichment_kegg.py' 2022-11-21T19:08:47,520 adding 'sequana/scripts/main/enrichment_panther.py' 2022-11-21T19:08:47,523 adding 'sequana/scripts/main/enrichment_uniprot.py' 2022-11-21T19:08:47,526 adding 'sequana/scripts/main/fasta.py' 2022-11-21T19:08:47,529 adding 'sequana/scripts/main/fastq.py' 2022-11-21T19:08:47,532 adding 'sequana/scripts/main/feature_count.py' 2022-11-21T19:08:47,535 adding 'sequana/scripts/main/gff_to_gtf.py' 2022-11-21T19:08:47,537 adding 'sequana/scripts/main/gff_to_light_gff.py' 2022-11-21T19:08:47,540 adding 'sequana/scripts/main/gtf_fixer.py' 2022-11-21T19:08:47,544 adding 'sequana/scripts/main/lane_merging.py' 2022-11-21T19:08:47,546 adding 'sequana/scripts/main/main.py' 2022-11-21T19:08:47,549 adding 'sequana/scripts/main/mapping.py' 2022-11-21T19:08:47,552 adding 'sequana/scripts/main/ribodesigner.py' 2022-11-21T19:08:47,557 adding 'sequana/scripts/main/rnadiff.py' 2022-11-21T19:08:47,560 adding 'sequana/scripts/main/rnaseq_compare.py' 2022-11-21T19:08:47,563 adding 'sequana/scripts/main/salmon.py' 2022-11-21T19:08:47,565 adding 'sequana/scripts/main/samplesheet.py' 2022-11-21T19:08:47,568 adding 'sequana/scripts/main/summary.py' 2022-11-21T19:08:47,571 adding 'sequana/scripts/main/taxonomy.py' 2022-11-21T19:08:47,574 adding 'sequana/scripts/main/utils.py' 2022-11-21T19:08:47,576 adding 'sequana/utils/__init__.py' 2022-11-21T19:08:47,579 adding 'sequana/utils/config.py' 2022-11-21T19:08:47,584 adding 'sequana/utils/datatables_js.py' 2022-11-21T19:08:47,587 adding 'sequana/utils/df2html.py' 2022-11-21T19:08:47,589 adding 'sequana/utils/singleton.py' 2022-11-21T19:08:47,592 adding 'sequana/utils/tree.py' 2022-11-21T19:08:47,595 adding 'sequana/viz/__init__.py' 2022-11-21T19:08:47,598 adding 'sequana/viz/anova.py' 2022-11-21T19:08:47,601 adding 'sequana/viz/boxplot.py' 2022-11-21T19:08:47,604 adding 'sequana/viz/clusterisation.py' 2022-11-21T19:08:47,607 adding 'sequana/viz/core.py' 2022-11-21T19:08:47,613 adding 'sequana/viz/corrplot.py' 2022-11-21T19:08:47,616 adding 'sequana/viz/dendogram.py' 2022-11-21T19:08:47,623 adding 'sequana/viz/heatmap.py' 2022-11-21T19:08:47,626 adding 'sequana/viz/hinton.py' 2022-11-21T19:08:47,629 adding 'sequana/viz/hist2d.py' 2022-11-21T19:08:47,632 adding 'sequana/viz/imshow.py' 2022-11-21T19:08:47,635 adding 'sequana/viz/isomap.py' 2022-11-21T19:08:47,638 adding 'sequana/viz/linkage.py' 2022-11-21T19:08:47,641 adding 'sequana/viz/mds.py' 2022-11-21T19:08:47,644 adding 'sequana/viz/pca.py' 2022-11-21T19:08:47,648 adding 'sequana/viz/scatter.py' 2022-11-21T19:08:47,651 adding 'sequana/viz/venn.py' 2022-11-21T19:08:47,655 adding 'sequana/viz/volcano.py' 2022-11-21T19:08:47,659 adding 'sequana-0.14.5.dist-info/LICENSE' 2022-11-21T19:08:47,663 adding 'sequana-0.14.5.dist-info/METADATA' 2022-11-21T19:08:47,665 adding 'sequana-0.14.5.dist-info/WHEEL' 2022-11-21T19:08:47,667 adding 'sequana-0.14.5.dist-info/entry_points.txt' 2022-11-21T19:08:47,669 adding 'sequana-0.14.5.dist-info/top_level.txt' 2022-11-21T19:08:47,682 adding 'sequana-0.14.5.dist-info/RECORD' 2022-11-21T19:08:47,757 removing build/bdist.linux-armv7l/wheel 2022-11-21T19:08:48,249 Building wheel for sequana (setup.py): finished with status 'done' 2022-11-21T19:08:48,306 Created wheel for sequana: filename=sequana-0.14.5-py3-none-any.whl size=1686409 sha256=6760a6aa1c63ca6353014ecead27b7ae89939bde2f9d2c5afa75ea09dfc353ee 2022-11-21T19:08:48,308 Stored in directory: /tmp/pip-ephem-wheel-cache-nh6mjs56/wheels/8b/c2/d8/5b9bab950fe8f27c95fb538df6a2fc823fd8dbd81af93286d5 2022-11-21T19:08:48,368 Successfully built sequana 2022-11-21T19:08:48,514 Removed build tracker: '/tmp/pip-build-tracker-wxl_g1n3'