2022-11-21T19:57:27,569 Created temporary directory: /tmp/pip-ephem-wheel-cache-cixs44fo 2022-11-21T19:57:27,573 Created temporary directory: /tmp/pip-build-tracker-rojrdrv9 2022-11-21T19:57:27,574 Initialized build tracking at /tmp/pip-build-tracker-rojrdrv9 2022-11-21T19:57:27,574 Created build tracker: /tmp/pip-build-tracker-rojrdrv9 2022-11-21T19:57:27,575 Entered build tracker: /tmp/pip-build-tracker-rojrdrv9 2022-11-21T19:57:27,576 Created temporary directory: /tmp/pip-wheel-axi3shci 2022-11-21T19:57:27,584 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-21T19:57:27,590 Created temporary directory: /tmp/pip-ephem-wheel-cache-m0j6ochk 2022-11-21T19:57:27,640 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-21T19:57:27,646 2 location(s) to search for versions of ngpiris: 2022-11-21T19:57:27,646 * https://pypi.org/simple/ngpiris/ 2022-11-21T19:57:27,646 * https://www.piwheels.org/simple/ngpiris/ 2022-11-21T19:57:27,647 Fetching project page and analyzing links: https://pypi.org/simple/ngpiris/ 2022-11-21T19:57:27,648 Getting page https://pypi.org/simple/ngpiris/ 2022-11-21T19:57:27,652 Found index url https://pypi.org/simple 2022-11-21T19:57:27,867 Fetched page https://pypi.org/simple/ngpiris/ as application/vnd.pypi.simple.v1+json 2022-11-21T19:57:27,878 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/4d/6e/f08727e739b7a54f7449ab02313eb50cabb2a795c92f253cf17f18c75617/NGPIris-3.0.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:27,879 Found link https://files.pythonhosted.org/packages/78/19/bf5cc9159ce9a268be187a5bddf2544732e150c403caaba9bb72031a6d38/NGPIris-3.0.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.0 2022-11-21T19:57:27,880 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a1/28/41151a5e1b5f39a800959d061e7f95eaa000ec0f590194b904e8174d850b/NGPIris-3.0.1-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:27,882 Found link https://files.pythonhosted.org/packages/6f/3e/43198b86cf36f8cb67292f40fde6f413df7b7a3712292985f0c9825e685b/NGPIris-3.0.1.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.1 2022-11-21T19:57:27,882 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/19/f3/6b1617929c5001e2cff89989a25184e8027a613f0999f263c987a07ca753/NGPIris-3.0.2-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:27,884 Found link https://files.pythonhosted.org/packages/bb/d2/aad6af2472bf44ece65bf403e0a7c9b40f7e899967e196fd53f26825b4b8/NGPIris-3.0.2.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.2 2022-11-21T19:57:27,884 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/ae/54/d7573467205bc7e14294a954def7f8c2194be848c6324ddfc1698b34017b/NGPIris-3.0.3-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:27,886 Found link https://files.pythonhosted.org/packages/b3/61/71f9236acb7b62ce74a0bb298ebdf34cf03792730a70f1aef8522ad9b6b4/NGPIris-3.0.3.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.3 2022-11-21T19:57:27,886 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a5/9a/addadfcc2e15874ed368c96636b0364efb4c66d03325cdf759e846bf7535/NGPIris-3.2.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:27,888 Found link https://files.pythonhosted.org/packages/54/e0/4c980696e9d9ba08080acdb2fd9c10c5e2f91a9e9c637c05d16445d3885d/NGPIris-3.2.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.2.0 2022-11-21T19:57:27,888 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/e3/7c/f979667a67fcb64cc5f95350857bd8e23f41737c5258bd7adda601a6bcfd/NGPIris-3.4.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:27,890 Found link https://files.pythonhosted.org/packages/76/a0/0588bac324aa12b00f07b6f9908d0bbfa93ec2961cfaf43a25d2b03f417a/NGPIris-3.4.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.0 2022-11-21T19:57:27,890 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/48/39/46d2cc57267af9da79f26acf2fadb712b2241080ff7f05e10919b94e2e9e/NGPIris-3.4.3-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:27,892 Found link https://files.pythonhosted.org/packages/58/6c/b015ab5bc06ec4d827cde658e67d16da46f16f91a1c645ea93a2391e4801/NGPIris-3.4.3.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.3 2022-11-21T19:57:27,892 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/31/90/cc8020a6d267339b1dcfa92d7c2290871e5affa81ac3eeca7983ae0ea696/NGPIris-3.4.5-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:27,894 Found link https://files.pythonhosted.org/packages/d3/12/938ecca558cbab1d59d09d84ebcb3eed332b393f765729f0a17663e15e47/NGPIris-3.4.5.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.5 2022-11-21T19:57:27,894 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/06/d6/34055477d5dbd32c3bf419f4f1aa6fff245ba21ba57c86b6914894968fcd/NGPIris-3.4.8-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:27,896 Found link https://files.pythonhosted.org/packages/f7/db/171f09ab48499129d6f0f4e6d75149dbca99550b4822a99848414d1235c7/NGPIris-3.4.8.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.8 2022-11-21T19:57:27,897 Found link https://files.pythonhosted.org/packages/88/e1/77c334e7c72936f168c8003e80dd7c34359959379aac4a220eb9cfc42be0/NGPIris-4.0.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.0.0 2022-11-21T19:57:27,898 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngpiris/ 2022-11-21T19:57:27,899 Getting page https://www.piwheels.org/simple/ngpiris/ 2022-11-21T19:57:27,901 Found index url https://www.piwheels.org/simple 2022-11-21T19:57:28,138 Fetched page https://www.piwheels.org/simple/ngpiris/ as text/html 2022-11-21T19:57:28,147 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.8-py3-none-any.whl#sha256=6d5c467d91f4a078774067564ee465935ff2fdfed4110db75eb5ade851138b1e (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:28,148 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.5-py3-none-any.whl#sha256=25fe84f5af43720363d8235d6cb9b0f4300220f95e41ccd0d4712e9d9901874c (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:28,149 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.3-py3-none-any.whl#sha256=bcafb399a8ea27aa1ffd6b4ecad46be12868946bbccb4d65ac190ddb24ff94f1 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:28,149 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.0-py3-none-any.whl#sha256=a6ebd0e230567c71827dc2d3c2cf00fb1a9ecc0d9e88d0f2f72d381c9b714b74 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:28,150 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.2.0-py3-none-any.whl#sha256=570205a5723cadf5283b876e9660252c2f2aeee83a926924290b1b405b5063b2 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:28,151 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.3-py3-none-any.whl#sha256=7f5bdd637e2f76d2556e053a6419f22bcf55f1c701f85a25f2d6d2242316d5d1 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:28,151 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.2-py3-none-any.whl#sha256=c641248d1cd745848e1e17172315e26d9a5b1f285d82e00a13c828d2df52a42b (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:28,152 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.1-py3-none-any.whl#sha256=0e81c3cfead2a48f830959ae216820ff0fbca5855dbcf688bd2f48315be72860 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:28,152 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.0-py3-none-any.whl#sha256=c1e03dfb87bc818cd85e79c209f4472232fd2ebfff1ba7dc03bae3cdaf9bd233 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-21T19:57:28,153 Skipping link: not a file: https://www.piwheels.org/simple/ngpiris/ 2022-11-21T19:57:28,153 Skipping link: not a file: https://pypi.org/simple/ngpiris/ 2022-11-21T19:57:28,189 Given no hashes to check 1 links for project 'ngpiris': discarding no candidates 2022-11-21T19:57:28,219 Collecting ngpiris==4.0.0 2022-11-21T19:57:28,224 Created temporary directory: /tmp/pip-unpack-vxxffkk2 2022-11-21T19:57:28,466 Downloading NGPIris-4.0.0.tar.gz (70 kB) 2022-11-21T19:57:28,701 Added ngpiris==4.0.0 from https://files.pythonhosted.org/packages/88/e1/77c334e7c72936f168c8003e80dd7c34359959379aac4a220eb9cfc42be0/NGPIris-4.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-rojrdrv9' 2022-11-21T19:57:28,711 Created temporary directory: /tmp/pip-build-env-1kjmc1zw 2022-11-21T19:57:28,722 Installing build dependencies: started 2022-11-21T19:57:28,724 Running command pip subprocess to install build dependencies 2022-11-21T19:57:31,536 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-11-21T19:57:32,548 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-21T19:57:32,602 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-21T19:57:36,501 Collecting setuptools>=42 2022-11-21T19:57:36,786 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.0-py3-none-any.whl (1.2 MB) 2022-11-21T19:57:37,451 Collecting wheel 2022-11-21T19:57:37,483 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-11-21T19:57:44,274 Installing collected packages: wheel, setuptools 2022-11-21T19:57:44,553 Creating /tmp/pip-build-env-1kjmc1zw/overlay/bin 2022-11-21T19:57:44,557 changing mode of /tmp/pip-build-env-1kjmc1zw/overlay/bin/wheel to 755 2022-11-21T19:57:49,386 Successfully installed setuptools-65.6.0 wheel-0.38.4 2022-11-21T19:57:49,423 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-11-21T19:57:49,423 [notice] To update, run: python3 -m pip install --upgrade pip 2022-11-21T19:57:49,873 Installing build dependencies: finished with status 'done' 2022-11-21T19:57:49,885 Getting requirements to build wheel: started 2022-11-21T19:57:49,887 Running command Getting requirements to build wheel 2022-11-21T19:57:52,304 running egg_info 2022-11-21T19:57:52,316 writing NGPIris.egg-info/PKG-INFO 2022-11-21T19:57:52,321 writing dependency_links to NGPIris.egg-info/dependency_links.txt 2022-11-21T19:57:52,325 writing entry points to NGPIris.egg-info/entry_points.txt 2022-11-21T19:57:52,328 writing requirements to NGPIris.egg-info/requires.txt 2022-11-21T19:57:52,330 writing top-level names to NGPIris.egg-info/top_level.txt 2022-11-21T19:57:52,373 reading manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-21T19:57:52,379 reading manifest template 'MANIFEST.in' 2022-11-21T19:57:52,382 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:52,383 !! 2022-11-21T19:57:52,384 ########################################################################## 2022-11-21T19:57:52,384 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:52,384 ########################################################################## 2022-11-21T19:57:52,385 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:52,386 `requires-python = '>=3.6'` 2022-11-21T19:57:52,387 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:52,388 consider this value unless 'requires-python' is listed as `dynamic`. 2022-11-21T19:57:52,388 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:52,389 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:52,390 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:52,390 follow strictly the standard. 2022-11-21T19:57:52,391 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-11-21T19:57:52,391 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:52,392 configuration. 2022-11-21T19:57:52,393 !! 2022-11-21T19:57:52,393 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:52,393 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:52,394 !! 2022-11-21T19:57:52,395 ########################################################################## 2022-11-21T19:57:52,395 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:52,395 ########################################################################## 2022-11-21T19:57:52,396 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:52,396 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-11-21T19:57:52,397 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:52,397 consider this value unless 'classifiers' is listed as `dynamic`. 2022-11-21T19:57:52,398 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:52,398 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:52,399 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:52,399 follow strictly the standard. 2022-11-21T19:57:52,400 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-11-21T19:57:52,400 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:52,400 configuration. 2022-11-21T19:57:52,402 !! 2022-11-21T19:57:52,402 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:52,403 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:52,403 !! 2022-11-21T19:57:52,404 ########################################################################## 2022-11-21T19:57:52,405 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:52,405 ########################################################################## 2022-11-21T19:57:52,406 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:52,406 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-11-21T19:57:52,407 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:52,407 consider this value unless 'urls' is listed as `dynamic`. 2022-11-21T19:57:52,408 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:52,409 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:52,410 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:52,410 follow strictly the standard. 2022-11-21T19:57:52,411 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-11-21T19:57:52,412 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:52,412 configuration. 2022-11-21T19:57:52,413 !! 2022-11-21T19:57:52,414 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:52,415 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:52,415 !! 2022-11-21T19:57:52,416 ########################################################################## 2022-11-21T19:57:52,417 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:52,417 ########################################################################## 2022-11-21T19:57:52,418 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:52,419 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-11-21T19:57:52,420 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:52,420 consider this value unless 'entry-points' is listed as `dynamic`. 2022-11-21T19:57:52,421 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:52,422 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:52,422 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:52,422 follow strictly the standard. 2022-11-21T19:57:52,423 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-11-21T19:57:52,424 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:52,424 configuration. 2022-11-21T19:57:52,426 !! 2022-11-21T19:57:52,426 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:52,427 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:52,427 !! 2022-11-21T19:57:52,428 ########################################################################## 2022-11-21T19:57:52,429 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:52,429 ########################################################################## 2022-11-21T19:57:52,430 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:52,431 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-11-21T19:57:52,432 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:52,432 consider this value unless 'dependencies' is listed as `dynamic`. 2022-11-21T19:57:52,433 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:52,433 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:52,434 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:52,434 follow strictly the standard. 2022-11-21T19:57:52,435 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-11-21T19:57:52,435 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:52,436 configuration. 2022-11-21T19:57:52,437 !! 2022-11-21T19:57:52,438 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:52,438 warning: no files found matching 'freeze.txt' 2022-11-21T19:57:52,439 warning: no files found matching 'profile.json' 2022-11-21T19:57:52,439 adding license file 'LICENSE' 2022-11-21T19:57:52,439 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-21T19:57:52,640 Getting requirements to build wheel: finished with status 'done' 2022-11-21T19:57:52,660 Created temporary directory: /tmp/pip-modern-metadata-aa2ya05i 2022-11-21T19:57:52,665 Preparing metadata (pyproject.toml): started 2022-11-21T19:57:52,667 Running command Preparing metadata (pyproject.toml) 2022-11-21T19:57:55,062 running dist_info 2022-11-21T19:57:55,076 creating /tmp/pip-modern-metadata-aa2ya05i/NGPIris.egg-info 2022-11-21T19:57:55,085 writing /tmp/pip-modern-metadata-aa2ya05i/NGPIris.egg-info/PKG-INFO 2022-11-21T19:57:55,091 writing dependency_links to /tmp/pip-modern-metadata-aa2ya05i/NGPIris.egg-info/dependency_links.txt 2022-11-21T19:57:55,095 writing entry points to /tmp/pip-modern-metadata-aa2ya05i/NGPIris.egg-info/entry_points.txt 2022-11-21T19:57:55,097 writing requirements to /tmp/pip-modern-metadata-aa2ya05i/NGPIris.egg-info/requires.txt 2022-11-21T19:57:55,099 writing top-level names to /tmp/pip-modern-metadata-aa2ya05i/NGPIris.egg-info/top_level.txt 2022-11-21T19:57:55,102 writing manifest file '/tmp/pip-modern-metadata-aa2ya05i/NGPIris.egg-info/SOURCES.txt' 2022-11-21T19:57:55,140 reading manifest file '/tmp/pip-modern-metadata-aa2ya05i/NGPIris.egg-info/SOURCES.txt' 2022-11-21T19:57:55,147 reading manifest template 'MANIFEST.in' 2022-11-21T19:57:55,150 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:55,150 !! 2022-11-21T19:57:55,151 ########################################################################## 2022-11-21T19:57:55,152 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:55,152 ########################################################################## 2022-11-21T19:57:55,153 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:55,154 `requires-python = '>=3.6'` 2022-11-21T19:57:55,155 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:55,155 consider this value unless 'requires-python' is listed as `dynamic`. 2022-11-21T19:57:55,156 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:55,157 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:55,157 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:55,158 follow strictly the standard. 2022-11-21T19:57:55,158 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-11-21T19:57:55,159 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:55,159 configuration. 2022-11-21T19:57:55,160 !! 2022-11-21T19:57:55,161 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:55,161 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:55,161 !! 2022-11-21T19:57:55,162 ########################################################################## 2022-11-21T19:57:55,162 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:55,163 ########################################################################## 2022-11-21T19:57:55,163 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:55,164 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-11-21T19:57:55,164 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:55,165 consider this value unless 'classifiers' is listed as `dynamic`. 2022-11-21T19:57:55,165 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:55,166 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:55,167 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:55,167 follow strictly the standard. 2022-11-21T19:57:55,168 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-11-21T19:57:55,168 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:55,168 configuration. 2022-11-21T19:57:55,169 !! 2022-11-21T19:57:55,170 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:55,170 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:55,171 !! 2022-11-21T19:57:55,171 ########################################################################## 2022-11-21T19:57:55,172 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:55,172 ########################################################################## 2022-11-21T19:57:55,173 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:55,173 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-11-21T19:57:55,174 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:55,174 consider this value unless 'urls' is listed as `dynamic`. 2022-11-21T19:57:55,175 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:55,176 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:55,176 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:55,176 follow strictly the standard. 2022-11-21T19:57:55,177 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-11-21T19:57:55,177 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:55,178 configuration. 2022-11-21T19:57:55,178 !! 2022-11-21T19:57:55,179 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:55,179 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:55,180 !! 2022-11-21T19:57:55,180 ########################################################################## 2022-11-21T19:57:55,181 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:55,181 ########################################################################## 2022-11-21T19:57:55,182 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:55,183 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-11-21T19:57:55,183 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:55,183 consider this value unless 'entry-points' is listed as `dynamic`. 2022-11-21T19:57:55,184 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:55,185 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:55,185 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:55,186 follow strictly the standard. 2022-11-21T19:57:55,187 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-11-21T19:57:55,187 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:55,188 configuration. 2022-11-21T19:57:55,189 !! 2022-11-21T19:57:55,190 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:55,190 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:55,191 !! 2022-11-21T19:57:55,192 ########################################################################## 2022-11-21T19:57:55,192 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:55,193 ########################################################################## 2022-11-21T19:57:55,194 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:55,194 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-11-21T19:57:55,195 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:55,196 consider this value unless 'dependencies' is listed as `dynamic`. 2022-11-21T19:57:55,197 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:55,197 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:55,198 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:55,198 follow strictly the standard. 2022-11-21T19:57:55,199 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-11-21T19:57:55,200 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:55,200 configuration. 2022-11-21T19:57:55,201 !! 2022-11-21T19:57:55,202 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:55,203 warning: no files found matching 'freeze.txt' 2022-11-21T19:57:55,203 warning: no files found matching 'profile.json' 2022-11-21T19:57:55,204 adding license file 'LICENSE' 2022-11-21T19:57:55,204 writing manifest file '/tmp/pip-modern-metadata-aa2ya05i/NGPIris.egg-info/SOURCES.txt' 2022-11-21T19:57:55,204 creating '/tmp/pip-modern-metadata-aa2ya05i/NGPIris-4.0.0.dist-info' 2022-11-21T19:57:55,490 Preparing metadata (pyproject.toml): finished with status 'done' 2022-11-21T19:57:55,506 Source in /tmp/pip-wheel-axi3shci/ngpiris_002364f3b036453ab89cff8e7733dbaf has version 4.0.0, which satisfies requirement ngpiris==4.0.0 from https://files.pythonhosted.org/packages/88/e1/77c334e7c72936f168c8003e80dd7c34359959379aac4a220eb9cfc42be0/NGPIris-4.0.0.tar.gz 2022-11-21T19:57:55,508 Removed ngpiris==4.0.0 from https://files.pythonhosted.org/packages/88/e1/77c334e7c72936f168c8003e80dd7c34359959379aac4a220eb9cfc42be0/NGPIris-4.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-rojrdrv9' 2022-11-21T19:57:55,522 Created temporary directory: /tmp/pip-unpack-u0476u9w 2022-11-21T19:57:55,524 Building wheels for collected packages: ngpiris 2022-11-21T19:57:55,534 Created temporary directory: /tmp/pip-wheel-pmu6r81h 2022-11-21T19:57:55,534 Destination directory: /tmp/pip-wheel-pmu6r81h 2022-11-21T19:57:55,539 Building wheel for ngpiris (pyproject.toml): started 2022-11-21T19:57:55,541 Running command Building wheel for ngpiris (pyproject.toml) 2022-11-21T19:57:57,758 running bdist_wheel 2022-11-21T19:57:57,789 running build 2022-11-21T19:57:57,790 running build_py 2022-11-21T19:57:57,801 creating build 2022-11-21T19:57:57,802 creating build/lib 2022-11-21T19:57:57,803 creating build/lib/tests 2022-11-21T19:57:57,814 copying tests/simpleConnectionTest.py -> build/lib/tests 2022-11-21T19:57:57,818 copying tests/test_cmds.py -> build/lib/tests 2022-11-21T19:57:57,821 copying tests/__init__.py -> build/lib/tests 2022-11-21T19:57:57,824 copying tests/test_hcp.py -> build/lib/tests 2022-11-21T19:57:57,829 creating build/lib/NGPIris 2022-11-21T19:57:57,831 copying NGPIris/__init__.py -> build/lib/NGPIris 2022-11-21T19:57:57,836 creating build/lib/NGPIris/preproc 2022-11-21T19:57:57,838 copying NGPIris/preproc/preproc.py -> build/lib/NGPIris/preproc 2022-11-21T19:57:57,842 copying NGPIris/preproc/__init__.py -> build/lib/NGPIris/preproc 2022-11-21T19:57:57,846 creating build/lib/NGPIris/hci 2022-11-21T19:57:57,848 copying NGPIris/hci/hci.py -> build/lib/NGPIris/hci 2022-11-21T19:57:57,852 copying NGPIris/hci/__init__.py -> build/lib/NGPIris/hci 2022-11-21T19:57:57,856 creating build/lib/NGPIris/cli 2022-11-21T19:57:57,858 copying NGPIris/cli/functions.py -> build/lib/NGPIris/cli 2022-11-21T19:57:57,863 copying NGPIris/cli/utils.py -> build/lib/NGPIris/cli 2022-11-21T19:57:57,867 copying NGPIris/cli/base.py -> build/lib/NGPIris/cli 2022-11-21T19:57:57,871 copying NGPIris/cli/__init__.py -> build/lib/NGPIris/cli 2022-11-21T19:57:57,876 creating build/lib/NGPIris/hcp 2022-11-21T19:57:57,879 copying NGPIris/hcp/hcp.py -> build/lib/NGPIris/hcp 2022-11-21T19:57:57,885 copying NGPIris/hcp/config.py -> build/lib/NGPIris/hcp 2022-11-21T19:57:57,888 copying NGPIris/hcp/helpers.py -> build/lib/NGPIris/hcp 2022-11-21T19:57:57,892 copying NGPIris/hcp/__init__.py -> build/lib/NGPIris/hcp 2022-11-21T19:57:57,895 copying NGPIris/hcp/errors.py -> build/lib/NGPIris/hcp 2022-11-21T19:57:57,898 running egg_info 2022-11-21T19:57:57,918 writing NGPIris.egg-info/PKG-INFO 2022-11-21T19:57:57,922 writing dependency_links to NGPIris.egg-info/dependency_links.txt 2022-11-21T19:57:57,925 writing entry points to NGPIris.egg-info/entry_points.txt 2022-11-21T19:57:57,927 writing requirements to NGPIris.egg-info/requires.txt 2022-11-21T19:57:57,929 writing top-level names to NGPIris.egg-info/top_level.txt 2022-11-21T19:57:57,952 reading manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-21T19:57:57,958 reading manifest template 'MANIFEST.in' 2022-11-21T19:57:57,960 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:57,961 !! 2022-11-21T19:57:57,962 ########################################################################## 2022-11-21T19:57:57,962 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:57,962 ########################################################################## 2022-11-21T19:57:57,963 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:57,964 `requires-python = '>=3.6'` 2022-11-21T19:57:57,964 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:57,965 consider this value unless 'requires-python' is listed as `dynamic`. 2022-11-21T19:57:57,965 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:57,966 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:57,966 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:57,967 follow strictly the standard. 2022-11-21T19:57:57,967 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-11-21T19:57:57,968 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:57,968 configuration. 2022-11-21T19:57:57,969 !! 2022-11-21T19:57:57,970 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:57,970 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:57,970 !! 2022-11-21T19:57:57,971 ########################################################################## 2022-11-21T19:57:57,971 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:57,972 ########################################################################## 2022-11-21T19:57:57,972 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:57,973 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-11-21T19:57:57,973 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:57,974 consider this value unless 'classifiers' is listed as `dynamic`. 2022-11-21T19:57:57,974 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:57,975 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:57,975 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:57,975 follow strictly the standard. 2022-11-21T19:57:57,976 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-11-21T19:57:57,976 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:57,977 configuration. 2022-11-21T19:57:57,977 !! 2022-11-21T19:57:57,978 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:57,979 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:57,979 !! 2022-11-21T19:57:57,980 ########################################################################## 2022-11-21T19:57:57,980 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:57,980 ########################################################################## 2022-11-21T19:57:57,981 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:57,982 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-11-21T19:57:57,982 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:57,983 consider this value unless 'urls' is listed as `dynamic`. 2022-11-21T19:57:57,983 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:57,984 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:57,984 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:57,984 follow strictly the standard. 2022-11-21T19:57:57,985 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-11-21T19:57:57,985 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:57,986 configuration. 2022-11-21T19:57:57,987 !! 2022-11-21T19:57:57,987 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:57,988 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:57,988 !! 2022-11-21T19:57:57,989 ########################################################################## 2022-11-21T19:57:57,989 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:57,990 ########################################################################## 2022-11-21T19:57:57,990 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:57,991 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-11-21T19:57:57,992 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:57,992 consider this value unless 'entry-points' is listed as `dynamic`. 2022-11-21T19:57:57,992 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:57,993 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:57,993 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:57,994 follow strictly the standard. 2022-11-21T19:57:57,994 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-11-21T19:57:57,995 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:57,995 configuration. 2022-11-21T19:57:57,996 !! 2022-11-21T19:57:57,997 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:57,998 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-11-21T19:57:57,998 !! 2022-11-21T19:57:57,999 ########################################################################## 2022-11-21T19:57:57,999 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-21T19:57:58,000 ########################################################################## 2022-11-21T19:57:58,000 The following seems to be defined outside of `pyproject.toml`: 2022-11-21T19:57:58,001 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-11-21T19:57:58,002 According to the spec (see the link below), however, setuptools CANNOT 2022-11-21T19:57:58,002 consider this value unless 'dependencies' is listed as `dynamic`. 2022-11-21T19:57:58,003 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-21T19:57:58,003 For the time being, `setuptools` will still consider the given value (as a 2022-11-21T19:57:58,004 **transitional** measure), but please note that future releases of setuptools will 2022-11-21T19:57:58,004 follow strictly the standard. 2022-11-21T19:57:58,005 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-11-21T19:57:58,005 remove the `[project]` table from your file and rely entirely on other means of 2022-11-21T19:57:58,005 configuration. 2022-11-21T19:57:58,006 !! 2022-11-21T19:57:58,007 warnings.warn(msg, _WouldIgnoreField) 2022-11-21T19:57:58,007 warning: no files found matching 'freeze.txt' 2022-11-21T19:57:58,007 warning: no files found matching 'profile.json' 2022-11-21T19:57:58,008 adding license file 'LICENSE' 2022-11-21T19:57:58,008 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-21T19:57:58,009 creating build/lib/tests/data 2022-11-21T19:57:58,009 copying tests/data/test.json -> build/lib/tests/data 2022-11-21T19:57:58,009 copying tests/data/test_reads_R1.fasterq -> build/lib/tests/data 2022-11-21T19:57:58,010 copying tests/data/test_reads_R1.fastq.gz -> build/lib/tests/data 2022-11-21T19:57:58,010 copying NGPIris/hci/template_query.json -> build/lib/NGPIris/hci 2022-11-21T19:57:58,031 installing to build/bdist.linux-armv7l/wheel 2022-11-21T19:57:58,032 running install 2022-11-21T19:57:58,094 running install_lib 2022-11-21T19:57:58,104 creating build/bdist.linux-armv7l 2022-11-21T19:57:58,105 creating build/bdist.linux-armv7l/wheel 2022-11-21T19:57:58,116 creating build/bdist.linux-armv7l/wheel/tests 2022-11-21T19:57:58,118 copying build/lib/tests/simpleConnectionTest.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-21T19:57:58,122 copying build/lib/tests/test_cmds.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-21T19:57:58,126 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-21T19:57:58,129 copying build/lib/tests/test_hcp.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-21T19:57:58,134 creating build/bdist.linux-armv7l/wheel/tests/data 2022-11-21T19:57:58,136 copying build/lib/tests/data/test.json -> build/bdist.linux-armv7l/wheel/tests/data 2022-11-21T19:57:58,140 copying build/lib/tests/data/test_reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/tests/data 2022-11-21T19:57:58,144 copying build/lib/tests/data/test_reads_R1.fasterq -> build/bdist.linux-armv7l/wheel/tests/data 2022-11-21T19:57:58,151 creating build/bdist.linux-armv7l/wheel/NGPIris 2022-11-21T19:57:58,154 creating build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-11-21T19:57:58,156 copying build/lib/NGPIris/preproc/preproc.py -> build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-11-21T19:57:58,160 copying build/lib/NGPIris/preproc/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-11-21T19:57:58,164 creating build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-21T19:57:58,166 copying build/lib/NGPIris/hci/hci.py -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-21T19:57:58,170 copying build/lib/NGPIris/hci/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-21T19:57:58,173 copying build/lib/NGPIris/hci/template_query.json -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-21T19:57:58,177 creating build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-21T19:57:58,179 copying build/lib/NGPIris/cli/functions.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-21T19:57:58,184 copying build/lib/NGPIris/cli/utils.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-21T19:57:58,187 copying build/lib/NGPIris/cli/base.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-21T19:57:58,191 copying build/lib/NGPIris/cli/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-21T19:57:58,195 creating build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-21T19:57:58,197 copying build/lib/NGPIris/hcp/hcp.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-21T19:57:58,202 copying build/lib/NGPIris/hcp/config.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-21T19:57:58,205 copying build/lib/NGPIris/hcp/helpers.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-21T19:57:58,209 copying build/lib/NGPIris/hcp/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-21T19:57:58,212 copying build/lib/NGPIris/hcp/errors.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-21T19:57:58,215 copying build/lib/NGPIris/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris 2022-11-21T19:57:58,218 running install_data 2022-11-21T19:57:58,229 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data 2022-11-21T19:57:58,230 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data 2022-11-21T19:57:58,232 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data/NGPIris 2022-11-21T19:57:58,234 copying config.ini -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data/NGPIris 2022-11-21T19:57:58,238 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data/reference 2022-11-21T19:57:58,240 copying reference/covidMetadataAllowedValues.csv -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data/reference 2022-11-21T19:57:58,244 copying reference/covidMetadataTemplate.csv -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data/reference 2022-11-21T19:57:58,247 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data/testdata 2022-11-21T19:57:58,249 copying tests/data/test_reads_R1.fasterq -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data/testdata 2022-11-21T19:57:58,256 copying tests/data/test_reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data/testdata 2022-11-21T19:57:58,259 copying tests/data/test.json -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.data/data/testdata 2022-11-21T19:57:58,262 running install_egg_info 2022-11-21T19:57:58,272 Copying NGPIris.egg-info to build/bdist.linux-armv7l/wheel/NGPIris-4.0.0-py3.7.egg-info 2022-11-21T19:57:58,299 running install_scripts 2022-11-21T19:57:58,343 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.0.dist-info/WHEEL 2022-11-21T19:57:58,348 creating '/tmp/pip-wheel-pmu6r81h/tmpfk49ocds/NGPIris-4.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-21T19:57:58,354 adding 'NGPIris/__init__.py' 2022-11-21T19:57:58,357 adding 'NGPIris/cli/__init__.py' 2022-11-21T19:57:58,360 adding 'NGPIris/cli/base.py' 2022-11-21T19:57:58,364 adding 'NGPIris/cli/functions.py' 2022-11-21T19:57:58,367 adding 'NGPIris/cli/utils.py' 2022-11-21T19:57:58,370 adding 'NGPIris/hci/__init__.py' 2022-11-21T19:57:58,373 adding 'NGPIris/hci/hci.py' 2022-11-21T19:57:58,376 adding 'NGPIris/hci/template_query.json' 2022-11-21T19:57:58,379 adding 'NGPIris/hcp/__init__.py' 2022-11-21T19:57:58,381 adding 'NGPIris/hcp/config.py' 2022-11-21T19:57:58,384 adding 'NGPIris/hcp/errors.py' 2022-11-21T19:57:58,411 adding 'NGPIris/hcp/hcp.py' 2022-11-21T19:57:58,414 adding 'NGPIris/hcp/helpers.py' 2022-11-21T19:57:58,418 adding 'NGPIris/preproc/__init__.py' 2022-11-21T19:57:58,421 adding 'NGPIris/preproc/preproc.py' 2022-11-21T19:57:58,426 adding 'NGPIris-4.0.0.data/data/NGPIris/config.ini' 2022-11-21T19:57:58,430 adding 'NGPIris-4.0.0.data/data/reference/covidMetadataAllowedValues.csv' 2022-11-21T19:57:58,432 adding 'NGPIris-4.0.0.data/data/reference/covidMetadataTemplate.csv' 2022-11-21T19:57:58,435 adding 'NGPIris-4.0.0.data/data/testdata/test.json' 2022-11-21T19:57:58,448 adding 'NGPIris-4.0.0.data/data/testdata/test_reads_R1.fasterq' 2022-11-21T19:57:58,452 adding 'NGPIris-4.0.0.data/data/testdata/test_reads_R1.fastq.gz' 2022-11-21T19:57:58,458 adding 'tests/__init__.py' 2022-11-21T19:57:58,461 adding 'tests/simpleConnectionTest.py' 2022-11-21T19:57:58,464 adding 'tests/test_cmds.py' 2022-11-21T19:57:58,466 adding 'tests/test_hcp.py' 2022-11-21T19:57:58,470 adding 'tests/data/test.json' 2022-11-21T19:57:58,482 adding 'tests/data/test_reads_R1.fasterq' 2022-11-21T19:57:58,486 adding 'tests/data/test_reads_R1.fastq.gz' 2022-11-21T19:57:58,493 adding 'NGPIris-4.0.0.dist-info/LICENSE' 2022-11-21T19:57:58,497 adding 'NGPIris-4.0.0.dist-info/METADATA' 2022-11-21T19:57:58,499 adding 'NGPIris-4.0.0.dist-info/WHEEL' 2022-11-21T19:57:58,501 adding 'NGPIris-4.0.0.dist-info/entry_points.txt' 2022-11-21T19:57:58,503 adding 'NGPIris-4.0.0.dist-info/top_level.txt' 2022-11-21T19:57:58,505 adding 'NGPIris-4.0.0.dist-info/RECORD' 2022-11-21T19:57:58,513 removing build/bdist.linux-armv7l/wheel 2022-11-21T19:57:58,542 /tmp/pip-build-env-1kjmc1zw/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tests.data' as data is deprecated, please list it in `packages`. 2022-11-21T19:57:58,543 !! 2022-11-21T19:57:58,544 ############################ 2022-11-21T19:57:58,545 # Package would be ignored # 2022-11-21T19:57:58,545 ############################ 2022-11-21T19:57:58,545 Python recognizes 'tests.data' as an importable package, 2022-11-21T19:57:58,546 but it is not listed in the `packages` configuration of setuptools. 2022-11-21T19:57:58,546 'tests.data' has been automatically added to the distribution only 2022-11-21T19:57:58,547 because it may contain data files, but this behavior is likely to change 2022-11-21T19:57:58,547 in future versions of setuptools (and therefore is considered deprecated). 2022-11-21T19:57:58,548 Please make sure that 'tests.data' is included as a package by using 2022-11-21T19:57:58,549 the `packages` configuration field or the proper discovery methods 2022-11-21T19:57:58,549 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-21T19:57:58,550 instead of `find_packages(...)`/`find:`). 2022-11-21T19:57:58,551 You can read more about "package discovery" and "data files" on setuptools 2022-11-21T19:57:58,551 documentation page. 2022-11-21T19:57:58,553 !! 2022-11-21T19:57:58,553 check.warn(importable) 2022-11-21T19:57:58,779 Building wheel for ngpiris (pyproject.toml): finished with status 'done' 2022-11-21T19:57:58,797 Created wheel for ngpiris: filename=NGPIris-4.0.0-py3-none-any.whl size=119689 sha256=c2c248431653bc75ec4b9309e8147c0dc95a7f691a36cfcab6476d56d07b9b93 2022-11-21T19:57:58,799 Stored in directory: /tmp/pip-ephem-wheel-cache-m0j6ochk/wheels/c7/23/fb/445d8b6ad899a9250b3225a82168ac4511194477973107de10 2022-11-21T19:57:58,831 Successfully built ngpiris 2022-11-21T19:57:58,848 Removed build tracker: '/tmp/pip-build-tracker-rojrdrv9'