2022-11-21T20:29:53,124 Created temporary directory: /tmp/pip-ephem-wheel-cache-pfb3bprd
2022-11-21T20:29:53,129 Created temporary directory: /tmp/pip-build-tracker-1l4d7qar
2022-11-21T20:29:53,129 Initialized build tracking at /tmp/pip-build-tracker-1l4d7qar
2022-11-21T20:29:53,130 Created build tracker: /tmp/pip-build-tracker-1l4d7qar
2022-11-21T20:29:53,130 Entered build tracker: /tmp/pip-build-tracker-1l4d7qar
2022-11-21T20:29:53,131 Created temporary directory: /tmp/pip-wheel-y9qsiwmn
2022-11-21T20:29:53,139 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-11-21T20:29:53,145 Created temporary directory: /tmp/pip-ephem-wheel-cache-92p4vr8u
2022-11-21T20:29:53,195 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-11-21T20:29:53,202 2 location(s) to search for versions of satmut-utils:
2022-11-21T20:29:53,202 * https://pypi.org/simple/satmut-utils/
2022-11-21T20:29:53,202 * https://www.piwheels.org/simple/satmut-utils/
2022-11-21T20:29:53,203 Fetching project page and analyzing links: https://pypi.org/simple/satmut-utils/
2022-11-21T20:29:53,204 Getting page https://pypi.org/simple/satmut-utils/
2022-11-21T20:29:53,208 Found index url https://pypi.org/simple
2022-11-21T20:29:53,390 Fetched page https://pypi.org/simple/satmut-utils/ as application/vnd.pypi.simple.v1+json
2022-11-21T20:29:53,394   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/9d/7d/aa6a904965242a0c56c1ecc510cf3f4840936f6087b6f0203a9a718743c1/satmut_utils-1.0.0-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2022-11-21T20:29:53,395   Found link https://files.pythonhosted.org/packages/a8/1b/4fc621a1dc7184b5ebb199d33f4792ce7755b61281fdf2313793423adfb9/satmut_utils-1.0.0.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.0
2022-11-21T20:29:53,396   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/c1/c3/5c2d910cb9364b7f3a8ef7bea6aef6914c374cc1cfe7b7a217f4329fb167/satmut_utils-1.0.1-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2022-11-21T20:29:53,397   Found link https://files.pythonhosted.org/packages/3c/cb/1f7123f703b841687553195526b0253c632b3b13f17dbeefd1f24bfa7e9e/satmut_utils-1.0.1.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.1
2022-11-21T20:29:53,398 Fetching project page and analyzing links: https://www.piwheels.org/simple/satmut-utils/
2022-11-21T20:29:53,399 Getting page https://www.piwheels.org/simple/satmut-utils/
2022-11-21T20:29:53,401 Found index url https://www.piwheels.org/simple
2022-11-21T20:29:53,634 Fetched page https://www.piwheels.org/simple/satmut-utils/ as text/html
2022-11-21T20:29:53,637   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.0-py3-none-any.whl#sha256=851816d46080d9e7a7ac2f235ea191e2a32f936dbd625d4caff953f6b4c1495c (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2022-11-21T20:29:53,638 Skipping link: not a file: https://www.piwheels.org/simple/satmut-utils/
2022-11-21T20:29:53,638 Skipping link: not a file: https://pypi.org/simple/satmut-utils/
2022-11-21T20:29:53,670 Given no hashes to check 1 links for project 'satmut-utils': discarding no candidates
2022-11-21T20:29:53,704 Collecting satmut-utils==1.0.1
2022-11-21T20:29:53,708   Created temporary directory: /tmp/pip-unpack-hpvlkfm3
2022-11-21T20:29:54,504   Downloading satmut_utils-1.0.1.tar.gz (12.0 MB)
2022-11-21T20:29:58,708   Added satmut-utils==1.0.1 from https://files.pythonhosted.org/packages/3c/cb/1f7123f703b841687553195526b0253c632b3b13f17dbeefd1f24bfa7e9e/satmut_utils-1.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-1l4d7qar'
2022-11-21T20:29:58,718   Created temporary directory: /tmp/pip-build-env-vprwoob3
2022-11-21T20:29:58,730   Installing build dependencies: started
2022-11-21T20:29:58,732   Running command pip subprocess to install build dependencies
2022-11-21T20:30:01,540   Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2022-11-21T20:30:02,298   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-11-21T20:30:02,356   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-11-21T20:30:06,100   Collecting setuptools>=59
2022-11-21T20:30:06,373     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.0-py3-none-any.whl (1.2 MB)
2022-11-21T20:30:07,023   Collecting wheel
2022-11-21T20:30:07,056     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2022-11-21T20:30:11,906   Installing collected packages: wheel, setuptools
2022-11-21T20:30:12,180     Creating /tmp/pip-build-env-vprwoob3/overlay/bin
2022-11-21T20:30:12,185     changing mode of /tmp/pip-build-env-vprwoob3/overlay/bin/wheel to 755
2022-11-21T20:30:17,014   Successfully installed setuptools-65.6.0 wheel-0.38.4

2022-11-21T20:30:17,044   [notice] A new release of pip available: 22.3 -> 22.3.1
2022-11-21T20:30:17,044   [notice] To update, run: python3 -m pip install --upgrade pip
2022-11-21T20:30:17,468   Installing build dependencies: finished with status 'done'
2022-11-21T20:30:17,480   Getting requirements to build wheel: started
2022-11-21T20:30:17,482   Running command Getting requirements to build wheel
2022-11-21T20:30:19,665   running egg_info
2022-11-21T20:30:19,682   writing src/satmut_utils.egg-info/PKG-INFO
2022-11-21T20:30:19,687   writing dependency_links to src/satmut_utils.egg-info/dependency_links.txt
2022-11-21T20:30:19,691   writing entry points to src/satmut_utils.egg-info/entry_points.txt
2022-11-21T20:30:19,695   writing top-level names to src/satmut_utils.egg-info/top_level.txt
2022-11-21T20:30:19,747   reading manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-11-21T20:30:19,755   reading manifest template 'MANIFEST.in'
2022-11-21T20:30:19,763   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-11-21T20:30:19,764   adding license file 'LICENSE.txt'
2022-11-21T20:30:19,777   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-11-21T20:30:19,978   Getting requirements to build wheel: finished with status 'done'
2022-11-21T20:30:19,999   Created temporary directory: /tmp/pip-modern-metadata-951ccf2s
2022-11-21T20:30:20,006   Preparing metadata (pyproject.toml): started
2022-11-21T20:30:20,009   Running command Preparing metadata (pyproject.toml)
2022-11-21T20:30:21,908   running dist_info
2022-11-21T20:30:21,952   creating /tmp/pip-modern-metadata-951ccf2s/satmut_utils.egg-info
2022-11-21T20:30:21,961   writing /tmp/pip-modern-metadata-951ccf2s/satmut_utils.egg-info/PKG-INFO
2022-11-21T20:30:21,967   writing dependency_links to /tmp/pip-modern-metadata-951ccf2s/satmut_utils.egg-info/dependency_links.txt
2022-11-21T20:30:21,972   writing entry points to /tmp/pip-modern-metadata-951ccf2s/satmut_utils.egg-info/entry_points.txt
2022-11-21T20:30:21,975   writing top-level names to /tmp/pip-modern-metadata-951ccf2s/satmut_utils.egg-info/top_level.txt
2022-11-21T20:30:21,978   writing manifest file '/tmp/pip-modern-metadata-951ccf2s/satmut_utils.egg-info/SOURCES.txt'
2022-11-21T20:30:22,026   reading manifest file '/tmp/pip-modern-metadata-951ccf2s/satmut_utils.egg-info/SOURCES.txt'
2022-11-21T20:30:22,033   reading manifest template 'MANIFEST.in'
2022-11-21T20:30:22,040   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-11-21T20:30:22,041   adding license file 'LICENSE.txt'
2022-11-21T20:30:22,051   writing manifest file '/tmp/pip-modern-metadata-951ccf2s/satmut_utils.egg-info/SOURCES.txt'
2022-11-21T20:30:22,053   creating '/tmp/pip-modern-metadata-951ccf2s/satmut_utils-1.0.1.dist-info'
2022-11-21T20:30:22,423   Preparing metadata (pyproject.toml): finished with status 'done'
2022-11-21T20:30:22,438   Source in /tmp/pip-wheel-y9qsiwmn/satmut-utils_955ddff02eb34e708a67c459d81bd18a has version 1.0.1, which satisfies requirement satmut-utils==1.0.1 from https://files.pythonhosted.org/packages/3c/cb/1f7123f703b841687553195526b0253c632b3b13f17dbeefd1f24bfa7e9e/satmut_utils-1.0.1.tar.gz
2022-11-21T20:30:22,440   Removed satmut-utils==1.0.1 from https://files.pythonhosted.org/packages/3c/cb/1f7123f703b841687553195526b0253c632b3b13f17dbeefd1f24bfa7e9e/satmut_utils-1.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-1l4d7qar'
2022-11-21T20:30:22,456 Created temporary directory: /tmp/pip-unpack-9hy6zyie
2022-11-21T20:30:22,457 Building wheels for collected packages: satmut-utils
2022-11-21T20:30:22,467   Created temporary directory: /tmp/pip-wheel-dy18rjyp
2022-11-21T20:30:22,468   Destination directory: /tmp/pip-wheel-dy18rjyp
2022-11-21T20:30:22,473   Building wheel for satmut-utils (pyproject.toml): started
2022-11-21T20:30:22,475   Running command Building wheel for satmut-utils (pyproject.toml)
2022-11-21T20:30:24,393   running bdist_wheel
2022-11-21T20:30:24,465   running build
2022-11-21T20:30:24,465   running build_py
2022-11-21T20:30:24,482   creating build
2022-11-21T20:30:24,483   creating build/lib
2022-11-21T20:30:24,484   creating build/lib/analysis
2022-11-21T20:30:24,486   copying src/analysis/__init__.py -> build/lib/analysis
2022-11-21T20:30:24,489   copying src/analysis/coordinate_mapper.py -> build/lib/analysis
2022-11-21T20:30:24,493   copying src/analysis/aligners.py -> build/lib/analysis
2022-11-21T20:30:24,497   copying src/analysis/references.py -> build/lib/analysis
2022-11-21T20:30:24,501   copying src/analysis/variant_caller.py -> build/lib/analysis
2022-11-21T20:30:24,507   copying src/analysis/seq_utils.py -> build/lib/analysis
2022-11-21T20:30:24,513   copying src/analysis/read_preprocessor.py -> build/lib/analysis
2022-11-21T20:30:24,523   copying src/analysis/read_editor.py -> build/lib/analysis
2022-11-21T20:30:24,532   creating build/lib/tests
2022-11-21T20:30:24,534   copying src/tests/__init__.py -> build/lib/tests
2022-11-21T20:30:24,538   creating build/lib/satmut_utils
2022-11-21T20:30:24,541   copying src/satmut_utils/__init__.py -> build/lib/satmut_utils
2022-11-21T20:30:24,544   copying src/satmut_utils/satmut_utils.py -> build/lib/satmut_utils
2022-11-21T20:30:24,551   copying src/satmut_utils/definitions.py -> build/lib/satmut_utils
2022-11-21T20:30:24,557   creating build/lib/core_utils
2022-11-21T20:30:24,559   copying src/core_utils/__init__.py -> build/lib/core_utils
2022-11-21T20:30:24,562   copying src/core_utils/feature_file_utils.py -> build/lib/core_utils
2022-11-21T20:30:24,567   copying src/core_utils/file_utils.py -> build/lib/core_utils
2022-11-21T20:30:24,571   copying src/core_utils/vcf_utils.py -> build/lib/core_utils
2022-11-21T20:30:24,577   copying src/core_utils/string_utils.py -> build/lib/core_utils
2022-11-21T20:30:24,583   creating build/lib/scripts
2022-11-21T20:30:24,585   copying src/scripts/__init__.py -> build/lib/scripts
2022-11-21T20:30:24,588   copying src/scripts/run_fastq_preprocessor.py -> build/lib/scripts
2022-11-21T20:30:24,593   copying src/scripts/run_bowtie2_aligner.py -> build/lib/scripts
2022-11-21T20:30:24,600   creating build/lib/tests/analysis
2022-11-21T20:30:24,602   copying src/tests/analysis/test_read_editor.py -> build/lib/tests/analysis
2022-11-21T20:30:24,609   copying src/tests/analysis/__init__.py -> build/lib/tests/analysis
2022-11-21T20:30:24,613   copying src/tests/analysis/test_aligners.py -> build/lib/tests/analysis
2022-11-21T20:30:24,617   copying src/tests/analysis/test_seq_utils.py -> build/lib/tests/analysis
2022-11-21T20:30:24,622   copying src/tests/analysis/test_read_preprocessor.py -> build/lib/tests/analysis
2022-11-21T20:30:24,631   copying src/tests/analysis/test_references.py -> build/lib/tests/analysis
2022-11-21T20:30:24,636   copying src/tests/analysis/test_coordinate_mapper.py -> build/lib/tests/analysis
2022-11-21T20:30:24,641   copying src/tests/analysis/test_variant_caller.py -> build/lib/tests/analysis
2022-11-21T20:30:24,648   creating build/lib/tests/test_data
2022-11-21T20:30:24,651   copying src/tests/test_data/__init__.py -> build/lib/tests/test_data
2022-11-21T20:30:24,655   creating build/lib/tests/core_utils
2022-11-21T20:30:24,658   copying src/tests/core_utils/__init__.py -> build/lib/tests/core_utils
2022-11-21T20:30:24,662   copying src/tests/core_utils/test_file_utils.py -> build/lib/tests/core_utils
2022-11-21T20:30:24,665   copying src/tests/core_utils/test_feature_file_utils.py -> build/lib/tests/core_utils
2022-11-21T20:30:24,670   copying src/tests/core_utils/test_string_utils.py -> build/lib/tests/core_utils
2022-11-21T20:30:24,674   running egg_info
2022-11-21T20:30:24,723   writing src/satmut_utils.egg-info/PKG-INFO
2022-11-21T20:30:24,727   writing dependency_links to src/satmut_utils.egg-info/dependency_links.txt
2022-11-21T20:30:24,732   writing entry points to src/satmut_utils.egg-info/entry_points.txt
2022-11-21T20:30:24,736   writing top-level names to src/satmut_utils.egg-info/top_level.txt
2022-11-21T20:30:24,766   reading manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-11-21T20:30:24,775   reading manifest template 'MANIFEST.in'
2022-11-21T20:30:24,783   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-11-21T20:30:24,784   adding license file 'LICENSE.txt'
2022-11-21T20:30:24,799   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-11-21T20:30:24,817   copying src/tests/test_data/CBS.fa -> build/lib/tests/test_data
2022-11-21T20:30:24,822   copying src/tests/test_data/CBS.gff -> build/lib/tests/test_data
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2022-11-21T20:30:24,833   copying src/tests/test_data/CBS_pEZY3.fa.1.bt2 -> build/lib/tests/test_data
2022-11-21T20:30:25,045   copying src/tests/test_data/CBS_pEZY3.fa.2.bt2 -> build/lib/tests/test_data
2022-11-21T20:30:25,050   copying src/tests/test_data/CBS_pEZY3.fa.3.bt2 -> build/lib/tests/test_data
2022-11-21T20:30:25,055   copying src/tests/test_data/CBS_pEZY3.fa.4.bt2 -> build/lib/tests/test_data
2022-11-21T20:30:25,060   copying src/tests/test_data/CBS_pEZY3.fa.fai -> build/lib/tests/test_data
2022-11-21T20:30:25,064   copying src/tests/test_data/CBS_pEZY3.fa.rev.1.bt2 -> build/lib/tests/test_data
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2022-11-21T20:30:25,420   copying src/tests/test_data/CBS_pEZY3_targets.bed -> build/lib/tests/test_data
2022-11-21T20:30:25,424   copying src/tests/test_data/CBS_sim.R1.fq.gz -> build/lib/tests/test_data
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2022-11-21T20:30:25,435   copying src/tests/test_data/CBS_sim.bam -> build/lib/tests/test_data
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2022-11-21T20:30:25,445   copying src/tests/test_data/CBS_sim.vcf -> build/lib/tests/test_data
2022-11-21T20:30:25,450   copying src/tests/test_data/CBS_sim_primers.bed -> build/lib/tests/test_data
2022-11-21T20:30:25,455   copying src/tests/test_data/GRCh38.chr21.fa.gz -> build/lib/tests/test_data
2022-11-21T20:30:26,021   copying src/tests/test_data/PKNOX1.fa -> build/lib/tests/test_data
2022-11-21T20:30:26,027   copying src/tests/test_data/appris_human_24_01_2019_selected.fa -> build/lib/tests/test_data
2022-11-21T20:30:26,033   copying src/tests/test_data/appris_human_24_01_2019_selected.fa.fai -> build/lib/tests/test_data
2022-11-21T20:30:26,038   copying src/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/lib/tests/test_data
2022-11-21T20:30:26,043   copying src/tests/test_data/appris_human_v1_actual_regions_gene_ids.txt -> build/lib/tests/test_data
2022-11-21T20:30:26,047   copying src/tests/test_data/appris_human_v1_actual_regions_trx_ids.txt -> build/lib/tests/test_data
2022-11-21T20:30:26,054   copying src/tests/test_data/gencode.v29.annotation.gtf -> build/lib/tests/test_data
2022-11-21T20:30:26,060   copying src/tests/test_data/test_preprocess.bam -> build/lib/tests/test_data
2022-11-21T20:30:26,065   copying src/tests/test_data/test_preprocess.bam.bai -> build/lib/tests/test_data
2022-11-21T20:30:26,069   copying src/tests/test_data/test_preprocess.sam -> build/lib/tests/test_data
2022-11-21T20:30:26,075   copying src/tests/test_data/test_preprocess.sort.bam -> build/lib/tests/test_data
2022-11-21T20:30:26,080   copying src/tests/test_data/test_preprocess.sort.bam.bai -> build/lib/tests/test_data
2022-11-21T20:30:26,128   installing to build/bdist.linux-armv7l/wheel
2022-11-21T20:30:26,128   running install
2022-11-21T20:30:26,192   running install_lib
2022-11-21T20:30:26,207   creating build/bdist.linux-armv7l
2022-11-21T20:30:26,208   creating build/bdist.linux-armv7l/wheel
2022-11-21T20:30:26,212   creating build/bdist.linux-armv7l/wheel/analysis
2022-11-21T20:30:26,214   copying build/lib/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/analysis
2022-11-21T20:30:26,217   copying build/lib/analysis/coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/analysis
2022-11-21T20:30:26,222   copying build/lib/analysis/aligners.py -> build/bdist.linux-armv7l/wheel/analysis
2022-11-21T20:30:26,227   copying build/lib/analysis/references.py -> build/bdist.linux-armv7l/wheel/analysis
2022-11-21T20:30:26,231   copying build/lib/analysis/variant_caller.py -> build/bdist.linux-armv7l/wheel/analysis
2022-11-21T20:30:26,238   copying build/lib/analysis/seq_utils.py -> build/bdist.linux-armv7l/wheel/analysis
2022-11-21T20:30:26,243   copying build/lib/analysis/read_preprocessor.py -> build/bdist.linux-armv7l/wheel/analysis
2022-11-21T20:30:26,251   copying build/lib/analysis/read_editor.py -> build/bdist.linux-armv7l/wheel/analysis
2022-11-21T20:30:26,258   creating build/bdist.linux-armv7l/wheel/tests
2022-11-21T20:30:26,260   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2022-11-21T20:30:26,264   creating build/bdist.linux-armv7l/wheel/tests/analysis
2022-11-21T20:30:26,266   copying build/lib/tests/analysis/test_read_editor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-11-21T20:30:26,273   copying build/lib/tests/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-11-21T20:30:26,276   copying build/lib/tests/analysis/test_aligners.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-11-21T20:30:26,279   copying build/lib/tests/analysis/test_seq_utils.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-11-21T20:30:26,284   copying build/lib/tests/analysis/test_read_preprocessor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-11-21T20:30:26,291   copying build/lib/tests/analysis/test_references.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-11-21T20:30:26,295   copying build/lib/tests/analysis/test_coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-11-21T20:30:26,300   copying build/lib/tests/analysis/test_variant_caller.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-11-21T20:30:26,308   creating build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,310   copying build/lib/tests/test_data/CBS_pEZY3.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,313   copying build/lib/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,316   copying build/lib/tests/test_data/CBS_pEZY3.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,320   copying build/lib/tests/test_data/CBS_sim.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,324   copying build/lib/tests/test_data/appris_human_v1_actual_regions_gene_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,328   copying build/lib/tests/test_data/CBS.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,331   copying build/lib/tests/test_data/CBS_sim.vcf -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,344   copying build/lib/tests/test_data/appris_human_v1_actual_regions_trx_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,347   copying build/lib/tests/test_data/CBS_sim.R1.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,351   copying build/lib/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,354   copying build/lib/tests/test_data/test_preprocess.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,358   copying build/lib/tests/test_data/gencode.v29.annotation.gtf -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,363   copying build/lib/tests/test_data/CBS_pEZY3_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,367   copying build/lib/tests/test_data/CBS_sim.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,370   copying build/lib/tests/test_data/CBS_pEZY3.fa.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,374   copying build/lib/tests/test_data/GRCh38.chr21.fa.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,959   copying build/lib/tests/test_data/test_preprocess.sort.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,963   copying build/lib/tests/test_data/test_preprocess.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,967   copying build/lib/tests/test_data/test_preprocess.sam -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,973   copying build/lib/tests/test_data/CBS.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,978   copying build/lib/tests/test_data/test_preprocess.sort.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,981   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,986   copying build/lib/tests/test_data/CBS_pEZY3.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,990   copying build/lib/tests/test_data/CBS_pEZY3.fa.3.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,994   copying build/lib/tests/test_data/CBS_sim.R2.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:26,997   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:27,001   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:27,206   copying build/lib/tests/test_data/CBS_pEZY3_targets.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:27,210   copying build/lib/tests/test_data/CBS_pEZY3.fa.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:27,369   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:27,373   copying build/lib/tests/test_data/PKNOX1.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:27,378   copying build/lib/tests/test_data/CBS_sim_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:27,382   copying build/lib/tests/test_data/CBS_pEZY3.fa.4.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-11-21T20:30:27,387   creating build/bdist.linux-armv7l/wheel/tests/core_utils
2022-11-21T20:30:27,389   copying build/lib/tests/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2022-11-21T20:30:27,393   copying build/lib/tests/core_utils/test_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2022-11-21T20:30:27,397   copying build/lib/tests/core_utils/test_feature_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2022-11-21T20:30:27,401   copying build/lib/tests/core_utils/test_string_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2022-11-21T20:30:27,405   creating build/bdist.linux-armv7l/wheel/satmut_utils
2022-11-21T20:30:27,407   copying build/lib/satmut_utils/__init__.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2022-11-21T20:30:27,410   copying build/lib/satmut_utils/satmut_utils.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2022-11-21T20:30:27,416   copying build/lib/satmut_utils/definitions.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2022-11-21T20:30:27,420   creating build/bdist.linux-armv7l/wheel/core_utils
2022-11-21T20:30:27,422   copying build/lib/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-11-21T20:30:27,425   copying build/lib/core_utils/feature_file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-11-21T20:30:27,430   copying build/lib/core_utils/file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-11-21T20:30:27,433   copying build/lib/core_utils/vcf_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-11-21T20:30:27,439   copying build/lib/core_utils/string_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-11-21T20:30:27,443   creating build/bdist.linux-armv7l/wheel/scripts
2022-11-21T20:30:27,445   copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts
2022-11-21T20:30:27,448   copying build/lib/scripts/run_fastq_preprocessor.py -> build/bdist.linux-armv7l/wheel/scripts
2022-11-21T20:30:27,452   copying build/lib/scripts/run_bowtie2_aligner.py -> build/bdist.linux-armv7l/wheel/scripts
2022-11-21T20:30:27,455   running install_egg_info
2022-11-21T20:30:27,479   Copying src/satmut_utils.egg-info to build/bdist.linux-armv7l/wheel/satmut_utils-1.0.1-py3.7.egg-info
2022-11-21T20:30:27,502   running install_scripts
2022-11-21T20:30:27,644   creating build/bdist.linux-armv7l/wheel/satmut_utils-1.0.1.dist-info/WHEEL
2022-11-21T20:30:27,650   creating '/tmp/pip-wheel-dy18rjyp/tmpdtgt_xe6/satmut_utils-1.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-11-21T20:30:27,654   adding 'analysis/__init__.py'
2022-11-21T20:30:27,658   adding 'analysis/aligners.py'
2022-11-21T20:30:27,665   adding 'analysis/coordinate_mapper.py'
2022-11-21T20:30:27,677   adding 'analysis/read_editor.py'
2022-11-21T20:30:27,699   adding 'analysis/read_preprocessor.py'
2022-11-21T20:30:27,704   adding 'analysis/references.py'
2022-11-21T20:30:27,711   adding 'analysis/seq_utils.py'
2022-11-21T20:30:27,726   adding 'analysis/variant_caller.py'
2022-11-21T20:30:27,730   adding 'core_utils/__init__.py'
2022-11-21T20:30:27,734   adding 'core_utils/feature_file_utils.py'
2022-11-21T20:30:27,738   adding 'core_utils/file_utils.py'
2022-11-21T20:30:27,740   adding 'core_utils/string_utils.py'
2022-11-21T20:30:27,748   adding 'core_utils/vcf_utils.py'
2022-11-21T20:30:27,752   adding 'satmut_utils/__init__.py'
2022-11-21T20:30:27,755   adding 'satmut_utils/definitions.py'
2022-11-21T20:30:27,763   adding 'satmut_utils/satmut_utils.py'
2022-11-21T20:30:27,770   adding 'scripts/__init__.py'
2022-11-21T20:30:27,773   adding 'scripts/run_bowtie2_aligner.py'
2022-11-21T20:30:27,776   adding 'scripts/run_fastq_preprocessor.py'
2022-11-21T20:30:27,780   adding 'tests/__init__.py'
2022-11-21T20:30:27,783   adding 'tests/analysis/__init__.py'
2022-11-21T20:30:27,786   adding 'tests/analysis/test_aligners.py'
2022-11-21T20:30:27,790   adding 'tests/analysis/test_coordinate_mapper.py'
2022-11-21T20:30:27,798   adding 'tests/analysis/test_read_editor.py'
2022-11-21T20:30:27,811   adding 'tests/analysis/test_read_preprocessor.py'
2022-11-21T20:30:27,816   adding 'tests/analysis/test_references.py'
2022-11-21T20:30:27,821   adding 'tests/analysis/test_seq_utils.py'
2022-11-21T20:30:27,828   adding 'tests/analysis/test_variant_caller.py'
2022-11-21T20:30:27,833   adding 'tests/core_utils/__init__.py'
2022-11-21T20:30:27,836   adding 'tests/core_utils/test_feature_file_utils.py'
2022-11-21T20:30:27,839   adding 'tests/core_utils/test_file_utils.py'
2022-11-21T20:30:27,842   adding 'tests/core_utils/test_string_utils.py'
2022-11-21T20:30:27,847   adding 'tests/test_data/CBS.fa'
2022-11-21T20:30:27,851   adding 'tests/test_data/CBS.gff'
2022-11-21T20:30:27,859   adding 'tests/test_data/CBS_pEZY3.fa'
2022-11-21T20:30:28,096   adding 'tests/test_data/CBS_pEZY3.fa.1.bt2'
2022-11-21T20:30:28,183   adding 'tests/test_data/CBS_pEZY3.fa.2.bt2'
2022-11-21T20:30:28,185   adding 'tests/test_data/CBS_pEZY3.fa.3.bt2'
2022-11-21T20:30:28,188   adding 'tests/test_data/CBS_pEZY3.fa.4.bt2'
2022-11-21T20:30:28,190   adding 'tests/test_data/CBS_pEZY3.fa.fai'
2022-11-21T20:30:28,427   adding 'tests/test_data/CBS_pEZY3.fa.rev.1.bt2'
2022-11-21T20:30:28,514   adding 'tests/test_data/CBS_pEZY3.fa.rev.2.bt2'
2022-11-21T20:30:28,516   adding 'tests/test_data/CBS_pEZY3.gff'
2022-11-21T20:30:28,519   adding 'tests/test_data/CBS_pEZY3_primers.bed'
2022-11-21T20:30:28,521   adding 'tests/test_data/CBS_pEZY3_targets.bed'
2022-11-21T20:30:28,524   adding 'tests/test_data/CBS_sim.R1.fq.gz'
2022-11-21T20:30:28,526   adding 'tests/test_data/CBS_sim.R2.fq.gz'
2022-11-21T20:30:28,529   adding 'tests/test_data/CBS_sim.bam'
2022-11-21T20:30:28,532   adding 'tests/test_data/CBS_sim.bam.bai'
2022-11-21T20:30:28,534   adding 'tests/test_data/CBS_sim.vcf'
2022-11-21T20:30:28,537   adding 'tests/test_data/CBS_sim_primers.bed'
2022-11-21T20:30:31,769   adding 'tests/test_data/GRCh38.chr21.fa.gz'
2022-11-21T20:30:32,010   adding 'tests/test_data/PKNOX1.fa'
2022-11-21T20:30:32,013   adding 'tests/test_data/__init__.py'
2022-11-21T20:30:32,021   adding 'tests/test_data/appris_human_24_01_2019_selected.fa'
2022-11-21T20:30:32,024   adding 'tests/test_data/appris_human_24_01_2019_selected.fa.fai'
2022-11-21T20:30:32,027   adding 'tests/test_data/appris_human_v1_actual_regions_contigs.txt'
2022-11-21T20:30:32,029   adding 'tests/test_data/appris_human_v1_actual_regions_gene_ids.txt'
2022-11-21T20:30:32,032   adding 'tests/test_data/appris_human_v1_actual_regions_trx_ids.txt'
2022-11-21T20:30:32,037   adding 'tests/test_data/gencode.v29.annotation.gtf'
2022-11-21T20:30:32,041   adding 'tests/test_data/test_preprocess.bam'
2022-11-21T20:30:32,043   adding 'tests/test_data/test_preprocess.bam.bai'
2022-11-21T20:30:32,048   adding 'tests/test_data/test_preprocess.sam'
2022-11-21T20:30:32,051   adding 'tests/test_data/test_preprocess.sort.bam'
2022-11-21T20:30:32,054   adding 'tests/test_data/test_preprocess.sort.bam.bai'
2022-11-21T20:30:32,068   adding 'satmut_utils-1.0.1.dist-info/LICENSE.txt'
2022-11-21T20:30:32,072   adding 'satmut_utils-1.0.1.dist-info/METADATA'
2022-11-21T20:30:32,074   adding 'satmut_utils-1.0.1.dist-info/WHEEL'
2022-11-21T20:30:32,076   adding 'satmut_utils-1.0.1.dist-info/entry_points.txt'
2022-11-21T20:30:32,078   adding 'satmut_utils-1.0.1.dist-info/top_level.txt'
2022-11-21T20:30:32,082   adding 'satmut_utils-1.0.1.dist-info/RECORD'
2022-11-21T20:30:32,518   removing build/bdist.linux-armv7l/wheel
2022-11-21T20:30:32,808   Building wheel for satmut-utils (pyproject.toml): finished with status 'done'
2022-11-21T20:30:33,522   Created wheel for satmut-utils: filename=satmut_utils-1.0.1-py3-none-any.whl size=11988008 sha256=3f7c43b678b5e344409e2cb0718742684066d907768826a7d19b85b4c43adae6
2022-11-21T20:30:33,524   Stored in directory: /tmp/pip-ephem-wheel-cache-92p4vr8u/wheels/da/c0/ed/328a58fb2d7adea46d059e71b191f1f9d5b4b329c51da3d076
2022-11-21T20:30:33,572 Successfully built satmut-utils
2022-11-21T20:30:34,414 Removed build tracker: '/tmp/pip-build-tracker-1l4d7qar'