2022-11-23T07:58:53,015 Created temporary directory: /tmp/pip-ephem-wheel-cache-gdcr3v9t 2022-11-23T07:58:53,020 Created temporary directory: /tmp/pip-build-tracker-sj4r0nxr 2022-11-23T07:58:53,020 Initialized build tracking at /tmp/pip-build-tracker-sj4r0nxr 2022-11-23T07:58:53,021 Created build tracker: /tmp/pip-build-tracker-sj4r0nxr 2022-11-23T07:58:53,021 Entered build tracker: /tmp/pip-build-tracker-sj4r0nxr 2022-11-23T07:58:53,022 Created temporary directory: /tmp/pip-wheel-ni1g10fx 2022-11-23T07:58:53,030 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-23T07:58:53,036 Created temporary directory: /tmp/pip-ephem-wheel-cache-lg62cds5 2022-11-23T07:58:53,087 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-23T07:58:53,093 2 location(s) to search for versions of ngpiris: 2022-11-23T07:58:53,093 * https://pypi.org/simple/ngpiris/ 2022-11-23T07:58:53,093 * https://www.piwheels.org/simple/ngpiris/ 2022-11-23T07:58:53,094 Fetching project page and analyzing links: https://pypi.org/simple/ngpiris/ 2022-11-23T07:58:53,095 Getting page https://pypi.org/simple/ngpiris/ 2022-11-23T07:58:53,099 Found index url https://pypi.org/simple 2022-11-23T07:58:53,327 Fetched page https://pypi.org/simple/ngpiris/ as application/vnd.pypi.simple.v1+json 2022-11-23T07:58:53,338 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/4d/6e/f08727e739b7a54f7449ab02313eb50cabb2a795c92f253cf17f18c75617/NGPIris-3.0.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,340 Found link https://files.pythonhosted.org/packages/78/19/bf5cc9159ce9a268be187a5bddf2544732e150c403caaba9bb72031a6d38/NGPIris-3.0.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.0 2022-11-23T07:58:53,340 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a1/28/41151a5e1b5f39a800959d061e7f95eaa000ec0f590194b904e8174d850b/NGPIris-3.0.1-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,342 Found link https://files.pythonhosted.org/packages/6f/3e/43198b86cf36f8cb67292f40fde6f413df7b7a3712292985f0c9825e685b/NGPIris-3.0.1.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.1 2022-11-23T07:58:53,342 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/19/f3/6b1617929c5001e2cff89989a25184e8027a613f0999f263c987a07ca753/NGPIris-3.0.2-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,344 Found link https://files.pythonhosted.org/packages/bb/d2/aad6af2472bf44ece65bf403e0a7c9b40f7e899967e196fd53f26825b4b8/NGPIris-3.0.2.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.2 2022-11-23T07:58:53,344 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/ae/54/d7573467205bc7e14294a954def7f8c2194be848c6324ddfc1698b34017b/NGPIris-3.0.3-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,346 Found link https://files.pythonhosted.org/packages/b3/61/71f9236acb7b62ce74a0bb298ebdf34cf03792730a70f1aef8522ad9b6b4/NGPIris-3.0.3.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.3 2022-11-23T07:58:53,346 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a5/9a/addadfcc2e15874ed368c96636b0364efb4c66d03325cdf759e846bf7535/NGPIris-3.2.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,348 Found link https://files.pythonhosted.org/packages/54/e0/4c980696e9d9ba08080acdb2fd9c10c5e2f91a9e9c637c05d16445d3885d/NGPIris-3.2.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.2.0 2022-11-23T07:58:53,349 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/e3/7c/f979667a67fcb64cc5f95350857bd8e23f41737c5258bd7adda601a6bcfd/NGPIris-3.4.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,350 Found link https://files.pythonhosted.org/packages/76/a0/0588bac324aa12b00f07b6f9908d0bbfa93ec2961cfaf43a25d2b03f417a/NGPIris-3.4.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.0 2022-11-23T07:58:53,351 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/48/39/46d2cc57267af9da79f26acf2fadb712b2241080ff7f05e10919b94e2e9e/NGPIris-3.4.3-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,352 Found link https://files.pythonhosted.org/packages/58/6c/b015ab5bc06ec4d827cde658e67d16da46f16f91a1c645ea93a2391e4801/NGPIris-3.4.3.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.3 2022-11-23T07:58:53,352 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/31/90/cc8020a6d267339b1dcfa92d7c2290871e5affa81ac3eeca7983ae0ea696/NGPIris-3.4.5-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,354 Found link https://files.pythonhosted.org/packages/d3/12/938ecca558cbab1d59d09d84ebcb3eed332b393f765729f0a17663e15e47/NGPIris-3.4.5.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.5 2022-11-23T07:58:53,354 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/06/d6/34055477d5dbd32c3bf419f4f1aa6fff245ba21ba57c86b6914894968fcd/NGPIris-3.4.8-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,356 Found link https://files.pythonhosted.org/packages/f7/db/171f09ab48499129d6f0f4e6d75149dbca99550b4822a99848414d1235c7/NGPIris-3.4.8.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.8 2022-11-23T07:58:53,357 Found link https://files.pythonhosted.org/packages/88/e1/77c334e7c72936f168c8003e80dd7c34359959379aac4a220eb9cfc42be0/NGPIris-4.0.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.0.0 2022-11-23T07:58:53,359 Found link https://files.pythonhosted.org/packages/a8/0a/5be2fcffc753c011fb7ca46b4b85885fcf0ce84016185ad5d0fdd0e9d346/NGPIris-4.0.1.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.0.1 2022-11-23T07:58:53,359 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngpiris/ 2022-11-23T07:58:53,360 Getting page https://www.piwheels.org/simple/ngpiris/ 2022-11-23T07:58:53,362 Found index url https://www.piwheels.org/simple 2022-11-23T07:58:53,598 Fetched page https://www.piwheels.org/simple/ngpiris/ as text/html 2022-11-23T07:58:53,607 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-4.0.0-py3-none-any.whl#sha256=c2c248431653bc75ec4b9309e8147c0dc95a7f691a36cfcab6476d56d07b9b93 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,608 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.8-py3-none-any.whl#sha256=6d5c467d91f4a078774067564ee465935ff2fdfed4110db75eb5ade851138b1e (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,609 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.5-py3-none-any.whl#sha256=25fe84f5af43720363d8235d6cb9b0f4300220f95e41ccd0d4712e9d9901874c (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,609 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.3-py3-none-any.whl#sha256=bcafb399a8ea27aa1ffd6b4ecad46be12868946bbccb4d65ac190ddb24ff94f1 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,610 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.0-py3-none-any.whl#sha256=a6ebd0e230567c71827dc2d3c2cf00fb1a9ecc0d9e88d0f2f72d381c9b714b74 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,610 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.2.0-py3-none-any.whl#sha256=570205a5723cadf5283b876e9660252c2f2aeee83a926924290b1b405b5063b2 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,611 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.3-py3-none-any.whl#sha256=7f5bdd637e2f76d2556e053a6419f22bcf55f1c701f85a25f2d6d2242316d5d1 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,611 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.2-py3-none-any.whl#sha256=c641248d1cd745848e1e17172315e26d9a5b1f285d82e00a13c828d2df52a42b (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,612 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.1-py3-none-any.whl#sha256=0e81c3cfead2a48f830959ae216820ff0fbca5855dbcf688bd2f48315be72860 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,612 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.0-py3-none-any.whl#sha256=c1e03dfb87bc818cd85e79c209f4472232fd2ebfff1ba7dc03bae3cdaf9bd233 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T07:58:53,613 Skipping link: not a file: https://www.piwheels.org/simple/ngpiris/ 2022-11-23T07:58:53,613 Skipping link: not a file: https://pypi.org/simple/ngpiris/ 2022-11-23T07:58:53,650 Given no hashes to check 1 links for project 'ngpiris': discarding no candidates 2022-11-23T07:58:53,680 Collecting ngpiris==4.0.1 2022-11-23T07:58:53,684 Created temporary directory: /tmp/pip-unpack-wawh33vn 2022-11-23T07:58:53,922 Downloading NGPIris-4.0.1.tar.gz (70 kB) 2022-11-23T07:58:54,149 Added ngpiris==4.0.1 from https://files.pythonhosted.org/packages/a8/0a/5be2fcffc753c011fb7ca46b4b85885fcf0ce84016185ad5d0fdd0e9d346/NGPIris-4.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-sj4r0nxr' 2022-11-23T07:58:54,159 Created temporary directory: /tmp/pip-build-env-jbm1cb08 2022-11-23T07:58:54,170 Installing build dependencies: started 2022-11-23T07:58:54,172 Running command pip subprocess to install build dependencies 2022-11-23T07:58:56,916 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-11-23T07:58:57,897 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-23T07:58:57,951 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-23T07:59:01,772 Collecting setuptools>=42 2022-11-23T07:59:02,048 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.0-py3-none-any.whl (1.2 MB) 2022-11-23T07:59:02,667 Collecting wheel 2022-11-23T07:59:02,700 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-11-23T07:59:09,417 Installing collected packages: wheel, setuptools 2022-11-23T07:59:09,702 Creating /tmp/pip-build-env-jbm1cb08/overlay/bin 2022-11-23T07:59:09,707 changing mode of /tmp/pip-build-env-jbm1cb08/overlay/bin/wheel to 755 2022-11-23T07:59:14,543 Successfully installed setuptools-65.6.0 wheel-0.38.4 2022-11-23T07:59:14,581 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-11-23T07:59:14,581 [notice] To update, run: python3 -m pip install --upgrade pip 2022-11-23T07:59:15,029 Installing build dependencies: finished with status 'done' 2022-11-23T07:59:15,042 Getting requirements to build wheel: started 2022-11-23T07:59:15,044 Running command Getting requirements to build wheel 2022-11-23T07:59:17,455 running egg_info 2022-11-23T07:59:17,467 writing NGPIris.egg-info/PKG-INFO 2022-11-23T07:59:17,471 writing dependency_links to NGPIris.egg-info/dependency_links.txt 2022-11-23T07:59:17,475 writing entry points to NGPIris.egg-info/entry_points.txt 2022-11-23T07:59:17,478 writing requirements to NGPIris.egg-info/requires.txt 2022-11-23T07:59:17,481 writing top-level names to NGPIris.egg-info/top_level.txt 2022-11-23T07:59:17,524 reading manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-23T07:59:17,530 reading manifest template 'MANIFEST.in' 2022-11-23T07:59:17,533 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:17,533 !! 2022-11-23T07:59:17,534 ########################################################################## 2022-11-23T07:59:17,534 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:17,535 ########################################################################## 2022-11-23T07:59:17,535 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:17,536 `requires-python = '>=3.6'` 2022-11-23T07:59:17,537 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:17,537 consider this value unless 'requires-python' is listed as `dynamic`. 2022-11-23T07:59:17,538 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:17,538 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:17,539 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:17,539 follow strictly the standard. 2022-11-23T07:59:17,540 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-11-23T07:59:17,540 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:17,540 configuration. 2022-11-23T07:59:17,541 !! 2022-11-23T07:59:17,542 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:17,542 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:17,543 !! 2022-11-23T07:59:17,543 ########################################################################## 2022-11-23T07:59:17,544 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:17,544 ########################################################################## 2022-11-23T07:59:17,545 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:17,545 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-11-23T07:59:17,546 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:17,546 consider this value unless 'classifiers' is listed as `dynamic`. 2022-11-23T07:59:17,547 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:17,547 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:17,547 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:17,548 follow strictly the standard. 2022-11-23T07:59:17,548 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-11-23T07:59:17,549 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:17,549 configuration. 2022-11-23T07:59:17,550 !! 2022-11-23T07:59:17,550 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:17,551 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:17,551 !! 2022-11-23T07:59:17,552 ########################################################################## 2022-11-23T07:59:17,552 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:17,553 ########################################################################## 2022-11-23T07:59:17,553 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:17,554 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-11-23T07:59:17,554 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:17,555 consider this value unless 'urls' is listed as `dynamic`. 2022-11-23T07:59:17,555 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:17,556 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:17,557 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:17,557 follow strictly the standard. 2022-11-23T07:59:17,558 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-11-23T07:59:17,558 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:17,558 configuration. 2022-11-23T07:59:17,560 !! 2022-11-23T07:59:17,561 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:17,561 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:17,561 !! 2022-11-23T07:59:17,563 ########################################################################## 2022-11-23T07:59:17,563 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:17,564 ########################################################################## 2022-11-23T07:59:17,565 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:17,565 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-11-23T07:59:17,566 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:17,567 consider this value unless 'entry-points' is listed as `dynamic`. 2022-11-23T07:59:17,567 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:17,568 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:17,569 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:17,569 follow strictly the standard. 2022-11-23T07:59:17,570 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-11-23T07:59:17,570 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:17,571 configuration. 2022-11-23T07:59:17,572 !! 2022-11-23T07:59:17,573 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:17,573 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:17,573 !! 2022-11-23T07:59:17,575 ########################################################################## 2022-11-23T07:59:17,575 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:17,576 ########################################################################## 2022-11-23T07:59:17,577 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:17,577 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-11-23T07:59:17,578 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:17,579 consider this value unless 'dependencies' is listed as `dynamic`. 2022-11-23T07:59:17,579 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:17,580 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:17,581 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:17,581 follow strictly the standard. 2022-11-23T07:59:17,582 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-11-23T07:59:17,582 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:17,583 configuration. 2022-11-23T07:59:17,584 !! 2022-11-23T07:59:17,584 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:17,585 warning: no files found matching 'freeze.txt' 2022-11-23T07:59:17,585 warning: no files found matching 'profile.json' 2022-11-23T07:59:17,586 adding license file 'LICENSE' 2022-11-23T07:59:17,586 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-23T07:59:17,789 Getting requirements to build wheel: finished with status 'done' 2022-11-23T07:59:17,809 Created temporary directory: /tmp/pip-modern-metadata-1kf38h7g 2022-11-23T07:59:17,815 Preparing metadata (pyproject.toml): started 2022-11-23T07:59:17,817 Running command Preparing metadata (pyproject.toml) 2022-11-23T07:59:20,088 running dist_info 2022-11-23T07:59:20,102 creating /tmp/pip-modern-metadata-1kf38h7g/NGPIris.egg-info 2022-11-23T07:59:20,112 writing /tmp/pip-modern-metadata-1kf38h7g/NGPIris.egg-info/PKG-INFO 2022-11-23T07:59:20,118 writing dependency_links to /tmp/pip-modern-metadata-1kf38h7g/NGPIris.egg-info/dependency_links.txt 2022-11-23T07:59:20,122 writing entry points to /tmp/pip-modern-metadata-1kf38h7g/NGPIris.egg-info/entry_points.txt 2022-11-23T07:59:20,124 writing requirements to /tmp/pip-modern-metadata-1kf38h7g/NGPIris.egg-info/requires.txt 2022-11-23T07:59:20,126 writing top-level names to /tmp/pip-modern-metadata-1kf38h7g/NGPIris.egg-info/top_level.txt 2022-11-23T07:59:20,129 writing manifest file '/tmp/pip-modern-metadata-1kf38h7g/NGPIris.egg-info/SOURCES.txt' 2022-11-23T07:59:20,168 reading manifest file '/tmp/pip-modern-metadata-1kf38h7g/NGPIris.egg-info/SOURCES.txt' 2022-11-23T07:59:20,175 reading manifest template 'MANIFEST.in' 2022-11-23T07:59:20,177 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:20,178 !! 2022-11-23T07:59:20,179 ########################################################################## 2022-11-23T07:59:20,179 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:20,179 ########################################################################## 2022-11-23T07:59:20,180 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:20,181 `requires-python = '>=3.6'` 2022-11-23T07:59:20,181 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:20,182 consider this value unless 'requires-python' is listed as `dynamic`. 2022-11-23T07:59:20,182 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:20,183 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:20,183 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:20,184 follow strictly the standard. 2022-11-23T07:59:20,184 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-11-23T07:59:20,184 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:20,185 configuration. 2022-11-23T07:59:20,186 !! 2022-11-23T07:59:20,186 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:20,187 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:20,187 !! 2022-11-23T07:59:20,188 ########################################################################## 2022-11-23T07:59:20,188 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:20,188 ########################################################################## 2022-11-23T07:59:20,189 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:20,190 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-11-23T07:59:20,190 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:20,190 consider this value unless 'classifiers' is listed as `dynamic`. 2022-11-23T07:59:20,191 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:20,192 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:20,192 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:20,192 follow strictly the standard. 2022-11-23T07:59:20,193 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-11-23T07:59:20,193 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:20,193 configuration. 2022-11-23T07:59:20,194 !! 2022-11-23T07:59:20,195 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:20,195 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:20,196 !! 2022-11-23T07:59:20,196 ########################################################################## 2022-11-23T07:59:20,197 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:20,197 ########################################################################## 2022-11-23T07:59:20,198 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:20,198 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-11-23T07:59:20,199 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:20,199 consider this value unless 'urls' is listed as `dynamic`. 2022-11-23T07:59:20,200 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:20,200 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:20,201 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:20,201 follow strictly the standard. 2022-11-23T07:59:20,202 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-11-23T07:59:20,202 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:20,202 configuration. 2022-11-23T07:59:20,203 !! 2022-11-23T07:59:20,204 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:20,204 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:20,204 !! 2022-11-23T07:59:20,205 ########################################################################## 2022-11-23T07:59:20,206 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:20,206 ########################################################################## 2022-11-23T07:59:20,206 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:20,207 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-11-23T07:59:20,208 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:20,208 consider this value unless 'entry-points' is listed as `dynamic`. 2022-11-23T07:59:20,209 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:20,209 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:20,209 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:20,210 follow strictly the standard. 2022-11-23T07:59:20,210 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-11-23T07:59:20,211 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:20,211 configuration. 2022-11-23T07:59:20,212 !! 2022-11-23T07:59:20,212 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:20,213 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:20,213 !! 2022-11-23T07:59:20,214 ########################################################################## 2022-11-23T07:59:20,214 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:20,215 ########################################################################## 2022-11-23T07:59:20,215 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:20,216 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-11-23T07:59:20,217 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:20,217 consider this value unless 'dependencies' is listed as `dynamic`. 2022-11-23T07:59:20,217 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:20,218 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:20,219 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:20,219 follow strictly the standard. 2022-11-23T07:59:20,219 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-11-23T07:59:20,220 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:20,220 configuration. 2022-11-23T07:59:20,221 !! 2022-11-23T07:59:20,222 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:20,222 warning: no files found matching 'freeze.txt' 2022-11-23T07:59:20,222 warning: no files found matching 'profile.json' 2022-11-23T07:59:20,223 adding license file 'LICENSE' 2022-11-23T07:59:20,223 writing manifest file '/tmp/pip-modern-metadata-1kf38h7g/NGPIris.egg-info/SOURCES.txt' 2022-11-23T07:59:20,223 creating '/tmp/pip-modern-metadata-1kf38h7g/NGPIris-4.0.1.dist-info' 2022-11-23T07:59:20,523 Preparing metadata (pyproject.toml): finished with status 'done' 2022-11-23T07:59:20,539 Source in /tmp/pip-wheel-ni1g10fx/ngpiris_37e16a85ae4b4ab5ab7aabae40b5ed79 has version 4.0.1, which satisfies requirement ngpiris==4.0.1 from https://files.pythonhosted.org/packages/a8/0a/5be2fcffc753c011fb7ca46b4b85885fcf0ce84016185ad5d0fdd0e9d346/NGPIris-4.0.1.tar.gz 2022-11-23T07:59:20,541 Removed ngpiris==4.0.1 from https://files.pythonhosted.org/packages/a8/0a/5be2fcffc753c011fb7ca46b4b85885fcf0ce84016185ad5d0fdd0e9d346/NGPIris-4.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-sj4r0nxr' 2022-11-23T07:59:20,555 Created temporary directory: /tmp/pip-unpack-ginofw0a 2022-11-23T07:59:20,556 Building wheels for collected packages: ngpiris 2022-11-23T07:59:20,566 Created temporary directory: /tmp/pip-wheel-cujvkp5l 2022-11-23T07:59:20,567 Destination directory: /tmp/pip-wheel-cujvkp5l 2022-11-23T07:59:20,572 Building wheel for ngpiris (pyproject.toml): started 2022-11-23T07:59:20,574 Running command Building wheel for ngpiris (pyproject.toml) 2022-11-23T07:59:22,778 running bdist_wheel 2022-11-23T07:59:22,809 running build 2022-11-23T07:59:22,809 running build_py 2022-11-23T07:59:22,821 creating build 2022-11-23T07:59:22,822 creating build/lib 2022-11-23T07:59:22,824 creating build/lib/tests 2022-11-23T07:59:22,826 copying tests/simpleConnectionTest.py -> build/lib/tests 2022-11-23T07:59:22,830 copying tests/test_cmds.py -> build/lib/tests 2022-11-23T07:59:22,834 copying tests/__init__.py -> build/lib/tests 2022-11-23T07:59:22,837 copying tests/test_hcp.py -> build/lib/tests 2022-11-23T07:59:22,841 creating build/lib/NGPIris 2022-11-23T07:59:22,843 copying NGPIris/__init__.py -> build/lib/NGPIris 2022-11-23T07:59:22,848 creating build/lib/NGPIris/preproc 2022-11-23T07:59:22,850 copying NGPIris/preproc/preproc.py -> build/lib/NGPIris/preproc 2022-11-23T07:59:22,854 copying NGPIris/preproc/__init__.py -> build/lib/NGPIris/preproc 2022-11-23T07:59:22,858 creating build/lib/NGPIris/hci 2022-11-23T07:59:22,860 copying NGPIris/hci/hci.py -> build/lib/NGPIris/hci 2022-11-23T07:59:22,864 copying NGPIris/hci/__init__.py -> build/lib/NGPIris/hci 2022-11-23T07:59:22,869 creating build/lib/NGPIris/cli 2022-11-23T07:59:22,871 copying NGPIris/cli/functions.py -> build/lib/NGPIris/cli 2022-11-23T07:59:22,876 copying NGPIris/cli/utils.py -> build/lib/NGPIris/cli 2022-11-23T07:59:22,880 copying NGPIris/cli/base.py -> build/lib/NGPIris/cli 2022-11-23T07:59:22,884 copying NGPIris/cli/__init__.py -> build/lib/NGPIris/cli 2022-11-23T07:59:22,888 creating build/lib/NGPIris/hcp 2022-11-23T07:59:22,890 copying NGPIris/hcp/hcp.py -> build/lib/NGPIris/hcp 2022-11-23T07:59:22,895 copying NGPIris/hcp/config.py -> build/lib/NGPIris/hcp 2022-11-23T07:59:22,899 copying NGPIris/hcp/helpers.py -> build/lib/NGPIris/hcp 2022-11-23T07:59:22,902 copying NGPIris/hcp/__init__.py -> build/lib/NGPIris/hcp 2022-11-23T07:59:22,906 copying NGPIris/hcp/errors.py -> build/lib/NGPIris/hcp 2022-11-23T07:59:22,909 running egg_info 2022-11-23T07:59:22,929 writing NGPIris.egg-info/PKG-INFO 2022-11-23T07:59:22,933 writing dependency_links to NGPIris.egg-info/dependency_links.txt 2022-11-23T07:59:22,936 writing entry points to NGPIris.egg-info/entry_points.txt 2022-11-23T07:59:22,938 writing requirements to NGPIris.egg-info/requires.txt 2022-11-23T07:59:22,940 writing top-level names to NGPIris.egg-info/top_level.txt 2022-11-23T07:59:22,963 reading manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-23T07:59:22,969 reading manifest template 'MANIFEST.in' 2022-11-23T07:59:22,971 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:22,972 !! 2022-11-23T07:59:22,973 ########################################################################## 2022-11-23T07:59:22,973 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:22,973 ########################################################################## 2022-11-23T07:59:22,974 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:22,975 `requires-python = '>=3.6'` 2022-11-23T07:59:22,975 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:22,976 consider this value unless 'requires-python' is listed as `dynamic`. 2022-11-23T07:59:22,976 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:22,977 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:22,977 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:22,977 follow strictly the standard. 2022-11-23T07:59:22,978 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-11-23T07:59:22,979 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:22,979 configuration. 2022-11-23T07:59:22,980 !! 2022-11-23T07:59:22,980 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:22,981 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:22,981 !! 2022-11-23T07:59:22,982 ########################################################################## 2022-11-23T07:59:22,982 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:22,982 ########################################################################## 2022-11-23T07:59:22,983 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:22,984 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-11-23T07:59:22,984 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:22,984 consider this value unless 'classifiers' is listed as `dynamic`. 2022-11-23T07:59:22,985 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:22,986 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:22,986 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:22,986 follow strictly the standard. 2022-11-23T07:59:22,987 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-11-23T07:59:22,987 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:22,987 configuration. 2022-11-23T07:59:22,988 !! 2022-11-23T07:59:22,989 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:22,989 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:22,990 !! 2022-11-23T07:59:22,991 ########################################################################## 2022-11-23T07:59:22,991 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:22,991 ########################################################################## 2022-11-23T07:59:22,992 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:22,992 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-11-23T07:59:22,993 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:22,993 consider this value unless 'urls' is listed as `dynamic`. 2022-11-23T07:59:22,994 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:22,994 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:22,995 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:22,995 follow strictly the standard. 2022-11-23T07:59:22,996 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-11-23T07:59:22,996 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:22,996 configuration. 2022-11-23T07:59:22,997 !! 2022-11-23T07:59:22,998 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:22,998 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:22,998 !! 2022-11-23T07:59:22,999 ########################################################################## 2022-11-23T07:59:23,000 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:23,000 ########################################################################## 2022-11-23T07:59:23,001 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:23,001 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-11-23T07:59:23,002 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:23,002 consider this value unless 'entry-points' is listed as `dynamic`. 2022-11-23T07:59:23,003 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:23,004 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:23,004 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:23,004 follow strictly the standard. 2022-11-23T07:59:23,005 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-11-23T07:59:23,005 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:23,005 configuration. 2022-11-23T07:59:23,007 !! 2022-11-23T07:59:23,008 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:23,009 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-11-23T07:59:23,009 !! 2022-11-23T07:59:23,010 ########################################################################## 2022-11-23T07:59:23,010 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T07:59:23,011 ########################################################################## 2022-11-23T07:59:23,011 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T07:59:23,012 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-11-23T07:59:23,013 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T07:59:23,013 consider this value unless 'dependencies' is listed as `dynamic`. 2022-11-23T07:59:23,013 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T07:59:23,014 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T07:59:23,014 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T07:59:23,015 follow strictly the standard. 2022-11-23T07:59:23,015 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-11-23T07:59:23,016 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T07:59:23,016 configuration. 2022-11-23T07:59:23,017 !! 2022-11-23T07:59:23,018 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T07:59:23,018 warning: no files found matching 'freeze.txt' 2022-11-23T07:59:23,018 warning: no files found matching 'profile.json' 2022-11-23T07:59:23,019 adding license file 'LICENSE' 2022-11-23T07:59:23,019 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-23T07:59:23,019 creating build/lib/tests/data 2022-11-23T07:59:23,020 copying tests/data/test.json -> build/lib/tests/data 2022-11-23T07:59:23,020 copying tests/data/test_reads_R1.fasterq -> build/lib/tests/data 2022-11-23T07:59:23,020 copying tests/data/test_reads_R1.fastq.gz -> build/lib/tests/data 2022-11-23T07:59:23,021 copying NGPIris/hci/template_query.json -> build/lib/NGPIris/hci 2022-11-23T07:59:23,042 installing to build/bdist.linux-armv7l/wheel 2022-11-23T07:59:23,042 running install 2022-11-23T07:59:23,107 running install_lib 2022-11-23T07:59:23,118 creating build/bdist.linux-armv7l 2022-11-23T07:59:23,119 creating build/bdist.linux-armv7l/wheel 2022-11-23T07:59:23,122 creating build/bdist.linux-armv7l/wheel/tests 2022-11-23T07:59:23,124 copying build/lib/tests/simpleConnectionTest.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-23T07:59:23,128 copying build/lib/tests/test_cmds.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-23T07:59:23,132 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-23T07:59:23,135 copying build/lib/tests/test_hcp.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-23T07:59:23,140 creating build/bdist.linux-armv7l/wheel/tests/data 2022-11-23T07:59:23,142 copying build/lib/tests/data/test.json -> build/bdist.linux-armv7l/wheel/tests/data 2022-11-23T07:59:23,146 copying build/lib/tests/data/test_reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/tests/data 2022-11-23T07:59:23,149 copying build/lib/tests/data/test_reads_R1.fasterq -> build/bdist.linux-armv7l/wheel/tests/data 2022-11-23T07:59:23,157 creating build/bdist.linux-armv7l/wheel/NGPIris 2022-11-23T07:59:23,160 creating build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-11-23T07:59:23,162 copying build/lib/NGPIris/preproc/preproc.py -> build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-11-23T07:59:23,166 copying build/lib/NGPIris/preproc/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-11-23T07:59:23,170 creating build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-23T07:59:23,172 copying build/lib/NGPIris/hci/hci.py -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-23T07:59:23,176 copying build/lib/NGPIris/hci/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-23T07:59:23,180 copying build/lib/NGPIris/hci/template_query.json -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-23T07:59:23,185 creating build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T07:59:23,186 copying build/lib/NGPIris/cli/functions.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T07:59:23,191 copying build/lib/NGPIris/cli/utils.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T07:59:23,194 copying build/lib/NGPIris/cli/base.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T07:59:23,198 copying build/lib/NGPIris/cli/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T07:59:23,202 creating build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T07:59:23,204 copying build/lib/NGPIris/hcp/hcp.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T07:59:23,209 copying build/lib/NGPIris/hcp/config.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T07:59:23,213 copying build/lib/NGPIris/hcp/helpers.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T07:59:23,216 copying build/lib/NGPIris/hcp/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T07:59:23,220 copying build/lib/NGPIris/hcp/errors.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T07:59:23,224 copying build/lib/NGPIris/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris 2022-11-23T07:59:23,227 running install_data 2022-11-23T07:59:23,238 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data 2022-11-23T07:59:23,239 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data 2022-11-23T07:59:23,241 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data/NGPIris 2022-11-23T07:59:23,243 copying config.ini -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data/NGPIris 2022-11-23T07:59:23,247 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data/reference 2022-11-23T07:59:23,249 copying reference/covidMetadataAllowedValues.csv -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data/reference 2022-11-23T07:59:23,253 copying reference/covidMetadataTemplate.csv -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data/reference 2022-11-23T07:59:23,257 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data/testdata 2022-11-23T07:59:23,259 copying tests/data/test_reads_R1.fasterq -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data/testdata 2022-11-23T07:59:23,266 copying tests/data/test_reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data/testdata 2022-11-23T07:59:23,269 copying tests/data/test.json -> build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.data/data/testdata 2022-11-23T07:59:23,272 running install_egg_info 2022-11-23T07:59:23,282 Copying NGPIris.egg-info to build/bdist.linux-armv7l/wheel/NGPIris-4.0.1-py3.7.egg-info 2022-11-23T07:59:23,309 running install_scripts 2022-11-23T07:59:23,355 creating build/bdist.linux-armv7l/wheel/NGPIris-4.0.1.dist-info/WHEEL 2022-11-23T07:59:23,361 creating '/tmp/pip-wheel-cujvkp5l/tmpau8rl0c5/NGPIris-4.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-23T07:59:23,366 adding 'NGPIris/__init__.py' 2022-11-23T07:59:23,370 adding 'NGPIris/cli/__init__.py' 2022-11-23T07:59:23,373 adding 'NGPIris/cli/base.py' 2022-11-23T07:59:23,376 adding 'NGPIris/cli/functions.py' 2022-11-23T07:59:23,379 adding 'NGPIris/cli/utils.py' 2022-11-23T07:59:23,383 adding 'NGPIris/hci/__init__.py' 2022-11-23T07:59:23,385 adding 'NGPIris/hci/hci.py' 2022-11-23T07:59:23,388 adding 'NGPIris/hci/template_query.json' 2022-11-23T07:59:23,391 adding 'NGPIris/hcp/__init__.py' 2022-11-23T07:59:23,394 adding 'NGPIris/hcp/config.py' 2022-11-23T07:59:23,396 adding 'NGPIris/hcp/errors.py' 2022-11-23T07:59:23,400 adding 'NGPIris/hcp/hcp.py' 2022-11-23T07:59:23,403 adding 'NGPIris/hcp/helpers.py' 2022-11-23T07:59:23,406 adding 'NGPIris/preproc/__init__.py' 2022-11-23T07:59:23,410 adding 'NGPIris/preproc/preproc.py' 2022-11-23T07:59:23,415 adding 'NGPIris-4.0.1.data/data/NGPIris/config.ini' 2022-11-23T07:59:23,419 adding 'NGPIris-4.0.1.data/data/reference/covidMetadataAllowedValues.csv' 2022-11-23T07:59:23,422 adding 'NGPIris-4.0.1.data/data/reference/covidMetadataTemplate.csv' 2022-11-23T07:59:23,425 adding 'NGPIris-4.0.1.data/data/testdata/test.json' 2022-11-23T07:59:23,438 adding 'NGPIris-4.0.1.data/data/testdata/test_reads_R1.fasterq' 2022-11-23T07:59:23,441 adding 'NGPIris-4.0.1.data/data/testdata/test_reads_R1.fastq.gz' 2022-11-23T07:59:23,447 adding 'tests/__init__.py' 2022-11-23T07:59:23,450 adding 'tests/simpleConnectionTest.py' 2022-11-23T07:59:23,453 adding 'tests/test_cmds.py' 2022-11-23T07:59:23,455 adding 'tests/test_hcp.py' 2022-11-23T07:59:23,459 adding 'tests/data/test.json' 2022-11-23T07:59:23,471 adding 'tests/data/test_reads_R1.fasterq' 2022-11-23T07:59:23,475 adding 'tests/data/test_reads_R1.fastq.gz' 2022-11-23T07:59:23,482 adding 'NGPIris-4.0.1.dist-info/LICENSE' 2022-11-23T07:59:23,486 adding 'NGPIris-4.0.1.dist-info/METADATA' 2022-11-23T07:59:23,488 adding 'NGPIris-4.0.1.dist-info/WHEEL' 2022-11-23T07:59:23,490 adding 'NGPIris-4.0.1.dist-info/entry_points.txt' 2022-11-23T07:59:23,492 adding 'NGPIris-4.0.1.dist-info/top_level.txt' 2022-11-23T07:59:23,494 adding 'NGPIris-4.0.1.dist-info/RECORD' 2022-11-23T07:59:23,502 removing build/bdist.linux-armv7l/wheel 2022-11-23T07:59:23,533 /tmp/pip-build-env-jbm1cb08/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tests.data' as data is deprecated, please list it in `packages`. 2022-11-23T07:59:23,534 !! 2022-11-23T07:59:23,535 ############################ 2022-11-23T07:59:23,535 # Package would be ignored # 2022-11-23T07:59:23,536 ############################ 2022-11-23T07:59:23,536 Python recognizes 'tests.data' as an importable package, 2022-11-23T07:59:23,536 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T07:59:23,537 'tests.data' has been automatically added to the distribution only 2022-11-23T07:59:23,538 because it may contain data files, but this behavior is likely to change 2022-11-23T07:59:23,538 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T07:59:23,539 Please make sure that 'tests.data' is included as a package by using 2022-11-23T07:59:23,540 the `packages` configuration field or the proper discovery methods 2022-11-23T07:59:23,540 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T07:59:23,541 instead of `find_packages(...)`/`find:`). 2022-11-23T07:59:23,541 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T07:59:23,542 documentation page. 2022-11-23T07:59:23,543 !! 2022-11-23T07:59:23,544 check.warn(importable) 2022-11-23T07:59:23,768 Building wheel for ngpiris (pyproject.toml): finished with status 'done' 2022-11-23T07:59:23,786 Created wheel for ngpiris: filename=NGPIris-4.0.1-py3-none-any.whl size=119679 sha256=27f4612d2b8e55c501d1b0d184db6051438e11e1c34a8c7ce802f5198d07430d 2022-11-23T07:59:23,788 Stored in directory: /tmp/pip-ephem-wheel-cache-lg62cds5/wheels/bb/47/d4/16bc3afbb0cb862d8fa02c9f6e1a25d890682005d8c3563430 2022-11-23T07:59:23,819 Successfully built ngpiris 2022-11-23T07:59:23,840 Removed build tracker: '/tmp/pip-build-tracker-sj4r0nxr'