2022-11-23T08:04:18,928 Created temporary directory: /tmp/pip-ephem-wheel-cache-c6swq64d 2022-11-23T08:04:18,933 Created temporary directory: /tmp/pip-build-tracker-oa01yw1w 2022-11-23T08:04:18,933 Initialized build tracking at /tmp/pip-build-tracker-oa01yw1w 2022-11-23T08:04:18,934 Created build tracker: /tmp/pip-build-tracker-oa01yw1w 2022-11-23T08:04:18,934 Entered build tracker: /tmp/pip-build-tracker-oa01yw1w 2022-11-23T08:04:18,935 Created temporary directory: /tmp/pip-wheel-0kbvgf5s 2022-11-23T08:04:18,944 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-23T08:04:18,949 Created temporary directory: /tmp/pip-ephem-wheel-cache-z2463osi 2022-11-23T08:04:19,006 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-23T08:04:19,014 2 location(s) to search for versions of sdrf-pipelines: 2022-11-23T08:04:19,014 * https://pypi.org/simple/sdrf-pipelines/ 2022-11-23T08:04:19,014 * https://www.piwheels.org/simple/sdrf-pipelines/ 2022-11-23T08:04:19,015 Fetching project page and analyzing links: https://pypi.org/simple/sdrf-pipelines/ 2022-11-23T08:04:19,016 Getting page https://pypi.org/simple/sdrf-pipelines/ 2022-11-23T08:04:19,019 Found index url https://pypi.org/simple 2022-11-23T08:04:19,246 Fetched page https://pypi.org/simple/sdrf-pipelines/ as application/vnd.pypi.simple.v1+json 2022-11-23T08:04:19,268 Found link 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https://files.pythonhosted.org/packages/f5/23/0f13d3578fb3744409fdb51fff2b1e7de2f758d821171d84ebfc1ac7a439/sdrf_pipelines-0.0.12-py3-none-any.whl (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,294 Found link https://files.pythonhosted.org/packages/43/d9/ab63792284fb9f61d8890c6eabb94778d56a4addc112e2df0ac7f19ded51/sdrf-pipelines-0.0.13.tar.gz (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6), version: 0.0.13 2022-11-23T08:04:19,295 Skipping link: No binaries permitted for sdrf-pipelines: https://files.pythonhosted.org/packages/34/3a/1236d570e949bb9b0ae8ba082beae9dc4b0b5a314667a07df77c1cb5e7d5/sdrf_pipelines-0.0.13-py3-none-any.whl (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,296 Found link https://files.pythonhosted.org/packages/8a/5d/7cddd816981eca0d61d943d6fc4f1ef11357d40ffa6d9c2db2bebb70a02a/sdrf-pipelines-0.0.14.tar.gz (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6), version: 0.0.14 2022-11-23T08:04:19,297 Skipping link: No binaries permitted for sdrf-pipelines: https://files.pythonhosted.org/packages/dc/c3/2342d0c0b18aa1bf21f8a1d4ad044a119634699ae2bea6d9153e0907b43b/sdrf_pipelines-0.0.14-py3-none-any.whl (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,298 Found link https://files.pythonhosted.org/packages/df/12/8bb29f80b52752125bc3faa48feb7434b1dbf53b7fe537da0558be42ff1b/sdrf-pipelines-0.0.17.tar.gz (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6), version: 0.0.17 2022-11-23T08:04:19,299 Skipping link: No binaries permitted for sdrf-pipelines: https://files.pythonhosted.org/packages/c3/9a/3a4761aafc8b383886b5f12663cf53614a696517417c054dbbb4abf6d478/sdrf_pipelines-0.0.17-py3-none-any.whl (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,300 Found link https://files.pythonhosted.org/packages/d1/e8/00832b63691fab282f27955b505a39f8c44c0fcf10983c62bb6c2d7b8ca9/sdrf-pipelines-0.0.18.tar.gz (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6), version: 0.0.18 2022-11-23T08:04:19,301 Skipping link: No binaries permitted for sdrf-pipelines: https://files.pythonhosted.org/packages/40/f7/8f529dcf4e154883dbfe0c05195035bd539a3dfe6a1c50f6c55aec557c88/sdrf_pipelines-0.0.18-py3-none-any.whl (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,302 Found link https://files.pythonhosted.org/packages/42/de/e39e90461bb4f66d7522425f8cc17cb731b1a7c813d15b73e5bd96ff6679/sdrf-pipelines-0.0.19.tar.gz (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6), version: 0.0.19 2022-11-23T08:04:19,303 Skipping link: No binaries permitted for sdrf-pipelines: https://files.pythonhosted.org/packages/c2/10/bac9828cbad07b9bd054cd785b992a628a8798a1da0f93ec7060309139fe/sdrf_pipelines-0.0.19-py3-none-any.whl (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,304 Found link https://files.pythonhosted.org/packages/b9/b5/c444a49662e9daec6ecf01dd90636a448770b8f69d281c352cb0582671a1/sdrf-pipelines-0.0.20.tar.gz (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6), version: 0.0.20 2022-11-23T08:04:19,305 Skipping link: No binaries permitted for sdrf-pipelines: https://files.pythonhosted.org/packages/06/22/97635c47da50d79e93d66b54a9023a97790e71ad695b0c61e3b8d6ab2fb5/sdrf_pipelines-0.0.20-py3-none-any.whl (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,306 Found link https://files.pythonhosted.org/packages/96/5e/b8c87ff013d9c4d03e0a36bc726ccf9c6d6808a065ccfda4113649faf345/sdrf-pipelines-0.0.21.tar.gz (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6), version: 0.0.21 2022-11-23T08:04:19,307 Skipping link: No binaries permitted for sdrf-pipelines: https://files.pythonhosted.org/packages/21/86/cc2489eff047cd368077923cbaef206c0cec153a3b7ee3a863b16285f1db/sdrf_pipelines-0.0.21-py3-none-any.whl (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,309 Found link https://files.pythonhosted.org/packages/5c/b3/00dd66e6efb1a8052272308e27eeaae0b38cfc19d65f5a0526c75f53f92b/sdrf-pipelines-0.0.22.tar.gz (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6), version: 0.0.22 2022-11-23T08:04:19,309 Skipping link: No binaries permitted for sdrf-pipelines: https://files.pythonhosted.org/packages/32/00/dc82aa2c888ec26d98e7e39578fd335150f17363de6d8778a5f2f034b339/sdrf_pipelines-0.0.22-py3-none-any.whl (from https://pypi.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,310 Fetching project page and analyzing links: 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https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.11-py3-none-any.whl#sha256=bc5f0f3e5fa1f9741c37a0382c29668650f953b8db92be3220dd4b7207248a14 (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,549 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.10-py3-none-any.whl#sha256=996968fa2ec88a00b38b7765f4a7504e6f73dd66166ae3d961f2cb78f8a4a390 (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,550 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.9-py3-none-any.whl#sha256=44b09a5a8063a21c63ea54b4e7fc961218322f2885275002adaf8bd6f1c8f09d (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,550 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.8-py3-none-any.whl#sha256=833693dd2f2e6d740b48577e36f4cbe6fe50a7883f303fd90e511e26976b7058 (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,551 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.7-py3-none-any.whl#sha256=6bf0b2087e777cf91ba040d6ca9e73a82280add43acdb78382ea3e4e59f13708 (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,552 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.6-py3-none-any.whl#sha256=1b40cf99a08da15c9fdaa9500885d8959aa2a965a12321e66d8208d76bb92763 (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.6) 2022-11-23T08:04:19,552 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.5-py3-none-any.whl#sha256=216d9a4a9ac26396c4db638b3a3b895481f68563fd7f6d77c442a194faaa4c77 (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.5) 2022-11-23T08:04:19,553 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.4-py3-none-any.whl#sha256=c6423387fa9027f88c207430b4f5a0b2713edd07069b32270d5e132e63b8d6bc (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.5) 2022-11-23T08:04:19,553 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.3-py3-none-any.whl#sha256=e947682bc3e67d82cc945678c8068f82f511ceba05695fc6442dc8f920ca954b (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.5) 2022-11-23T08:04:19,554 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.2-py3-none-any.whl#sha256=44a856fe3a3448f7a3c99722d563211d5ea0282ffc0d04dc5525237008d27e84 (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.5) 2022-11-23T08:04:19,554 Skipping link: No binaries permitted for sdrf-pipelines: https://www.piwheels.org/simple/sdrf-pipelines/sdrf_pipelines-0.0.1-py3-none-any.whl#sha256=c368e9f0c66b6e46676b8aa423f07a797ddfd881c6f035a02c23d99f2aa55e54 (from https://www.piwheels.org/simple/sdrf-pipelines/) (requires-python:>=3.5) 2022-11-23T08:04:19,555 Skipping link: not a file: https://www.piwheels.org/simple/sdrf-pipelines/ 2022-11-23T08:04:19,555 Skipping link: not a file: https://pypi.org/simple/sdrf-pipelines/ 2022-11-23T08:04:19,595 Given no hashes to check 1 links for project 'sdrf-pipelines': discarding no candidates 2022-11-23T08:04:19,626 Collecting sdrf-pipelines==0.0.22 2022-11-23T08:04:19,630 Created temporary directory: /tmp/pip-unpack-4v5jwwjo 2022-11-23T08:04:19,878 Downloading sdrf-pipelines-0.0.22.tar.gz (247 kB) 2022-11-23T08:04:20,411 Added sdrf-pipelines==0.0.22 from https://files.pythonhosted.org/packages/5c/b3/00dd66e6efb1a8052272308e27eeaae0b38cfc19d65f5a0526c75f53f92b/sdrf-pipelines-0.0.22.tar.gz to build tracker '/tmp/pip-build-tracker-oa01yw1w' 2022-11-23T08:04:20,420 Created temporary directory: /tmp/pip-build-env-nxsbcf87 2022-11-23T08:04:20,432 Installing build dependencies: started 2022-11-23T08:04:20,434 Running command pip subprocess to install build dependencies 2022-11-23T08:04:23,077 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-11-23T08:04:23,857 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-23T08:04:23,910 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-23T08:04:27,808 Collecting setuptools>=40.8.0 2022-11-23T08:04:28,086 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.0-py3-none-any.whl (1.2 MB) 2022-11-23T08:04:28,728 Collecting wheel 2022-11-23T08:04:28,762 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-11-23T08:04:34,192 Installing collected packages: wheel, setuptools 2022-11-23T08:04:34,470 Creating /tmp/pip-build-env-nxsbcf87/overlay/bin 2022-11-23T08:04:34,474 changing mode of /tmp/pip-build-env-nxsbcf87/overlay/bin/wheel to 755 2022-11-23T08:04:39,353 Successfully installed setuptools-65.6.0 wheel-0.38.4 2022-11-23T08:04:39,384 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-11-23T08:04:39,385 [notice] To update, run: python3 -m pip install --upgrade pip 2022-11-23T08:04:39,814 Installing build dependencies: finished with status 'done' 2022-11-23T08:04:39,826 Getting requirements to build wheel: started 2022-11-23T08:04:39,829 Running command Getting requirements to build wheel 2022-11-23T08:04:41,752 running egg_info 2022-11-23T08:04:41,766 writing sdrf_pipelines.egg-info/PKG-INFO 2022-11-23T08:04:41,771 writing dependency_links to sdrf_pipelines.egg-info/dependency_links.txt 2022-11-23T08:04:41,775 writing entry points to sdrf_pipelines.egg-info/entry_points.txt 2022-11-23T08:04:41,778 writing requirements to sdrf_pipelines.egg-info/requires.txt 2022-11-23T08:04:41,781 writing top-level names to sdrf_pipelines.egg-info/top_level.txt 2022-11-23T08:04:41,841 reading manifest file 'sdrf_pipelines.egg-info/SOURCES.txt' 2022-11-23T08:04:41,846 reading manifest template 'MANIFEST.in' 2022-11-23T08:04:41,900 adding license file 'LICENSE' 2022-11-23T08:04:41,908 writing manifest file 'sdrf_pipelines.egg-info/SOURCES.txt' 2022-11-23T08:04:42,109 Getting requirements to build wheel: finished with status 'done' 2022-11-23T08:04:42,129 Created temporary directory: /tmp/pip-modern-metadata-vdjahoag 2022-11-23T08:04:42,135 Preparing metadata (pyproject.toml): started 2022-11-23T08:04:42,137 Running command Preparing metadata (pyproject.toml) 2022-11-23T08:04:43,921 running dist_info 2022-11-23T08:04:43,964 creating /tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines.egg-info 2022-11-23T08:04:43,975 writing /tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines.egg-info/PKG-INFO 2022-11-23T08:04:43,980 writing dependency_links to /tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines.egg-info/dependency_links.txt 2022-11-23T08:04:43,984 writing entry points to /tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines.egg-info/entry_points.txt 2022-11-23T08:04:43,987 writing requirements to /tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines.egg-info/requires.txt 2022-11-23T08:04:43,989 writing top-level names to /tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines.egg-info/top_level.txt 2022-11-23T08:04:43,992 writing manifest file '/tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines.egg-info/SOURCES.txt' 2022-11-23T08:04:44,049 reading manifest file '/tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines.egg-info/SOURCES.txt' 2022-11-23T08:04:44,057 reading manifest template 'MANIFEST.in' 2022-11-23T08:04:44,111 adding license file 'LICENSE' 2022-11-23T08:04:44,118 writing manifest file '/tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines.egg-info/SOURCES.txt' 2022-11-23T08:04:44,120 creating '/tmp/pip-modern-metadata-vdjahoag/sdrf_pipelines-0.0.22.dist-info' 2022-11-23T08:04:44,503 Preparing metadata (pyproject.toml): finished with status 'done' 2022-11-23T08:04:44,519 Source in /tmp/pip-wheel-0kbvgf5s/sdrf-pipelines_a58fd2ddeffc4e9786fd32fdd0c14063 has version 0.0.22, which satisfies requirement sdrf-pipelines==0.0.22 from https://files.pythonhosted.org/packages/5c/b3/00dd66e6efb1a8052272308e27eeaae0b38cfc19d65f5a0526c75f53f92b/sdrf-pipelines-0.0.22.tar.gz 2022-11-23T08:04:44,521 Removed sdrf-pipelines==0.0.22 from https://files.pythonhosted.org/packages/5c/b3/00dd66e6efb1a8052272308e27eeaae0b38cfc19d65f5a0526c75f53f92b/sdrf-pipelines-0.0.22.tar.gz from build tracker '/tmp/pip-build-tracker-oa01yw1w' 2022-11-23T08:04:44,536 Created temporary directory: /tmp/pip-unpack-_86tihae 2022-11-23T08:04:44,537 Building wheels for collected packages: sdrf-pipelines 2022-11-23T08:04:44,547 Created temporary directory: /tmp/pip-wheel-u899pix0 2022-11-23T08:04:44,548 Destination directory: /tmp/pip-wheel-u899pix0 2022-11-23T08:04:44,554 Building wheel for sdrf-pipelines (pyproject.toml): started 2022-11-23T08:04:44,556 Running command Building wheel for sdrf-pipelines (pyproject.toml) 2022-11-23T08:04:46,376 running bdist_wheel 2022-11-23T08:04:46,453 running build 2022-11-23T08:04:46,453 running build_py 2022-11-23T08:04:46,474 creating build 2022-11-23T08:04:46,475 creating build/lib 2022-11-23T08:04:46,476 creating build/lib/sdrf_pipelines 2022-11-23T08:04:46,478 copying sdrf_pipelines/__init__.py -> build/lib/sdrf_pipelines 2022-11-23T08:04:46,482 copying sdrf_pipelines/parse_sdrf.py -> build/lib/sdrf_pipelines 2022-11-23T08:04:46,487 creating build/lib/sdrf_pipelines/msstats 2022-11-23T08:04:46,489 copying sdrf_pipelines/msstats/__init__.py -> build/lib/sdrf_pipelines/msstats 2022-11-23T08:04:46,492 copying sdrf_pipelines/msstats/msstats.py -> build/lib/sdrf_pipelines/msstats 2022-11-23T08:04:46,497 creating build/lib/sdrf_pipelines/sdrf 2022-11-23T08:04:46,499 copying sdrf_pipelines/sdrf/sdrf_schema.py -> build/lib/sdrf_pipelines/sdrf 2022-11-23T08:04:46,504 copying sdrf_pipelines/sdrf/__init__.py -> build/lib/sdrf_pipelines/sdrf 2022-11-23T08:04:46,506 copying sdrf_pipelines/sdrf/sdrf.py -> build/lib/sdrf_pipelines/sdrf 2022-11-23T08:04:46,511 creating build/lib/sdrf_pipelines/tests 2022-11-23T08:04:46,512 copying sdrf_pipelines/tests/__init__.py -> build/lib/sdrf_pipelines/tests 2022-11-23T08:04:46,515 copying sdrf_pipelines/tests/test_sdrfchecker.py -> build/lib/sdrf_pipelines/tests 2022-11-23T08:04:46,520 creating build/lib/sdrf_pipelines/utils 2022-11-23T08:04:46,522 copying sdrf_pipelines/utils/__init__.py -> build/lib/sdrf_pipelines/utils 2022-11-23T08:04:46,525 copying sdrf_pipelines/utils/exceptions.py -> build/lib/sdrf_pipelines/utils 2022-11-23T08:04:46,529 creating build/lib/sdrf_pipelines/normalyzerde 2022-11-23T08:04:46,531 copying sdrf_pipelines/normalyzerde/normalyzerde.py -> build/lib/sdrf_pipelines/normalyzerde 2022-11-23T08:04:46,535 copying sdrf_pipelines/normalyzerde/__init__.py -> build/lib/sdrf_pipelines/normalyzerde 2022-11-23T08:04:46,540 creating build/lib/sdrf_pipelines/openms 2022-11-23T08:04:46,541 copying sdrf_pipelines/openms/__init__.py -> build/lib/sdrf_pipelines/openms 2022-11-23T08:04:46,544 copying sdrf_pipelines/openms/openms.py -> build/lib/sdrf_pipelines/openms 2022-11-23T08:04:46,550 copying sdrf_pipelines/openms/unimod.py -> build/lib/sdrf_pipelines/openms 2022-11-23T08:04:46,555 creating build/lib/sdrf_pipelines/maxquant 2022-11-23T08:04:46,557 copying sdrf_pipelines/maxquant/__init__.py -> build/lib/sdrf_pipelines/maxquant 2022-11-23T08:04:46,560 copying sdrf_pipelines/maxquant/maxquant.py -> build/lib/sdrf_pipelines/maxquant 2022-11-23T08:04:46,572 creating build/lib/sdrf_pipelines/zooma 2022-11-23T08:04:46,574 copying sdrf_pipelines/zooma/ols.py -> build/lib/sdrf_pipelines/zooma 2022-11-23T08:04:46,578 copying sdrf_pipelines/zooma/__init__.py -> build/lib/sdrf_pipelines/zooma 2022-11-23T08:04:46,581 copying sdrf_pipelines/zooma/zooma.py -> build/lib/sdrf_pipelines/zooma 2022-11-23T08:04:46,584 running egg_info 2022-11-23T08:04:46,628 writing sdrf_pipelines.egg-info/PKG-INFO 2022-11-23T08:04:46,632 writing dependency_links to sdrf_pipelines.egg-info/dependency_links.txt 2022-11-23T08:04:46,635 writing entry points to sdrf_pipelines.egg-info/entry_points.txt 2022-11-23T08:04:46,638 writing requirements to sdrf_pipelines.egg-info/requires.txt 2022-11-23T08:04:46,640 writing top-level names to sdrf_pipelines.egg-info/top_level.txt 2022-11-23T08:04:46,671 reading manifest file 'sdrf_pipelines.egg-info/SOURCES.txt' 2022-11-23T08:04:46,676 reading manifest template 'MANIFEST.in' 2022-11-23T08:04:46,728 adding license file 'LICENSE' 2022-11-23T08:04:46,736 writing manifest file 'sdrf_pipelines.egg-info/SOURCES.txt' 2022-11-23T08:04:46,752 creating build/lib/sdrf_pipelines/sdrf_merge 2022-11-23T08:04:46,753 copying sdrf_pipelines/sdrf_merge/param2sdrf.yml -> build/lib/sdrf_pipelines/sdrf_merge 2022-11-23T08:04:46,758 copying sdrf_pipelines/openms/unimod.xml -> build/lib/sdrf_pipelines/openms 2022-11-23T08:04:46,883 copying sdrf_pipelines/maxquant/modifications.xml -> build/lib/sdrf_pipelines/maxquant 2022-11-23T08:04:46,905 copying sdrf_pipelines/maxquant/param2sdrf.yml -> build/lib/sdrf_pipelines/maxquant 2022-11-23T08:04:46,951 installing to build/bdist.linux-armv7l/wheel 2022-11-23T08:04:46,951 running install 2022-11-23T08:04:47,016 running install_lib 2022-11-23T08:04:47,032 creating build/bdist.linux-armv7l 2022-11-23T08:04:47,034 creating build/bdist.linux-armv7l/wheel 2022-11-23T08:04:47,038 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines 2022-11-23T08:04:47,041 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines/msstats 2022-11-23T08:04:47,043 copying build/lib/sdrf_pipelines/msstats/__init__.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/msstats 2022-11-23T08:04:47,047 copying build/lib/sdrf_pipelines/msstats/msstats.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/msstats 2022-11-23T08:04:47,051 copying build/lib/sdrf_pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines 2022-11-23T08:04:47,056 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines/sdrf 2022-11-23T08:04:47,057 copying build/lib/sdrf_pipelines/sdrf/sdrf_schema.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/sdrf 2022-11-23T08:04:47,063 copying build/lib/sdrf_pipelines/sdrf/__init__.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/sdrf 2022-11-23T08:04:47,066 copying build/lib/sdrf_pipelines/sdrf/sdrf.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/sdrf 2022-11-23T08:04:47,071 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines/tests 2022-11-23T08:04:47,073 copying build/lib/sdrf_pipelines/tests/__init__.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/tests 2022-11-23T08:04:47,076 copying build/lib/sdrf_pipelines/tests/test_sdrfchecker.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/tests 2022-11-23T08:04:47,081 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines/utils 2022-11-23T08:04:47,082 copying build/lib/sdrf_pipelines/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/utils 2022-11-23T08:04:47,086 copying build/lib/sdrf_pipelines/utils/exceptions.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/utils 2022-11-23T08:04:47,089 copying build/lib/sdrf_pipelines/parse_sdrf.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines 2022-11-23T08:04:47,095 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines/normalyzerde 2022-11-23T08:04:47,096 copying build/lib/sdrf_pipelines/normalyzerde/normalyzerde.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/normalyzerde 2022-11-23T08:04:47,101 copying build/lib/sdrf_pipelines/normalyzerde/__init__.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/normalyzerde 2022-11-23T08:04:47,105 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines/openms 2022-11-23T08:04:47,112 copying build/lib/sdrf_pipelines/openms/__init__.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/openms 2022-11-23T08:04:47,115 copying build/lib/sdrf_pipelines/openms/openms.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/openms 2022-11-23T08:04:47,122 copying build/lib/sdrf_pipelines/openms/unimod.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/openms 2022-11-23T08:04:47,126 copying build/lib/sdrf_pipelines/openms/unimod.xml -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/openms 2022-11-23T08:04:47,247 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines/sdrf_merge 2022-11-23T08:04:47,249 copying build/lib/sdrf_pipelines/sdrf_merge/param2sdrf.yml -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/sdrf_merge 2022-11-23T08:04:47,254 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines/maxquant 2022-11-23T08:04:47,256 copying build/lib/sdrf_pipelines/maxquant/__init__.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/maxquant 2022-11-23T08:04:47,259 copying build/lib/sdrf_pipelines/maxquant/param2sdrf.yml -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/maxquant 2022-11-23T08:04:47,263 copying build/lib/sdrf_pipelines/maxquant/maxquant.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/maxquant 2022-11-23T08:04:47,276 copying build/lib/sdrf_pipelines/maxquant/modifications.xml -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/maxquant 2022-11-23T08:04:47,301 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines/zooma 2022-11-23T08:04:47,303 copying build/lib/sdrf_pipelines/zooma/ols.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/zooma 2022-11-23T08:04:47,308 copying build/lib/sdrf_pipelines/zooma/__init__.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/zooma 2022-11-23T08:04:47,312 copying build/lib/sdrf_pipelines/zooma/zooma.py -> build/bdist.linux-armv7l/wheel/sdrf_pipelines/zooma 2022-11-23T08:04:47,316 running install_data 2022-11-23T08:04:47,329 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines-0.0.22.data 2022-11-23T08:04:47,331 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines-0.0.22.data/data 2022-11-23T08:04:47,334 copying LICENSE -> build/bdist.linux-armv7l/wheel/sdrf_pipelines-0.0.22.data/data/ 2022-11-23T08:04:47,339 copying sdrf_pipelines/openms/unimod.xml -> build/bdist.linux-armv7l/wheel/sdrf_pipelines-0.0.22.data/data/ 2022-11-23T08:04:47,461 copying sdrf_pipelines/sdrf_merge/param2sdrf.yml -> build/bdist.linux-armv7l/wheel/sdrf_pipelines-0.0.22.data/data/ 2022-11-23T08:04:47,464 running install_egg_info 2022-11-23T08:04:47,490 Copying sdrf_pipelines.egg-info to build/bdist.linux-armv7l/wheel/sdrf_pipelines-0.0.22-py3.7.egg-info 2022-11-23T08:04:47,514 running install_scripts 2022-11-23T08:04:47,675 creating build/bdist.linux-armv7l/wheel/sdrf_pipelines-0.0.22.dist-info/WHEEL 2022-11-23T08:04:47,681 creating '/tmp/pip-wheel-u899pix0/tmp52hg2kkj/sdrf_pipelines-0.0.22-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-23T08:04:47,686 adding 'sdrf_pipelines/__init__.py' 2022-11-23T08:04:47,690 adding 'sdrf_pipelines/parse_sdrf.py' 2022-11-23T08:04:47,693 adding 'sdrf_pipelines/maxquant/__init__.py' 2022-11-23T08:04:47,720 adding 'sdrf_pipelines/maxquant/maxquant.py' 2022-11-23T08:04:47,758 adding 'sdrf_pipelines/maxquant/modifications.xml' 2022-11-23T08:04:47,769 adding 'sdrf_pipelines/maxquant/param2sdrf.yml' 2022-11-23T08:04:47,772 adding 'sdrf_pipelines/msstats/__init__.py' 2022-11-23T08:04:47,775 adding 'sdrf_pipelines/msstats/msstats.py' 2022-11-23T08:04:47,779 adding 'sdrf_pipelines/normalyzerde/__init__.py' 2022-11-23T08:04:47,782 adding 'sdrf_pipelines/normalyzerde/normalyzerde.py' 2022-11-23T08:04:47,786 adding 'sdrf_pipelines/openms/__init__.py' 2022-11-23T08:04:47,795 adding 'sdrf_pipelines/openms/openms.py' 2022-11-23T08:04:47,799 adding 'sdrf_pipelines/openms/unimod.py' 2022-11-23T08:04:48,050 adding 'sdrf_pipelines/openms/unimod.xml' 2022-11-23T08:04:48,101 adding 'sdrf_pipelines/sdrf/__init__.py' 2022-11-23T08:04:48,104 adding 'sdrf_pipelines/sdrf/sdrf.py' 2022-11-23T08:04:48,109 adding 'sdrf_pipelines/sdrf/sdrf_schema.py' 2022-11-23T08:04:48,113 adding 'sdrf_pipelines/sdrf_merge/param2sdrf.yml' 2022-11-23T08:04:48,117 adding 'sdrf_pipelines/tests/__init__.py' 2022-11-23T08:04:48,119 adding 'sdrf_pipelines/tests/test_sdrfchecker.py' 2022-11-23T08:04:48,123 adding 'sdrf_pipelines/utils/__init__.py' 2022-11-23T08:04:48,125 adding 'sdrf_pipelines/utils/exceptions.py' 2022-11-23T08:04:48,129 adding 'sdrf_pipelines/zooma/__init__.py' 2022-11-23T08:04:48,132 adding 'sdrf_pipelines/zooma/ols.py' 2022-11-23T08:04:48,136 adding 'sdrf_pipelines/zooma/zooma.py' 2022-11-23T08:04:48,143 adding 'sdrf_pipelines-0.0.22.data/data/LICENSE' 2022-11-23T08:04:48,146 adding 'sdrf_pipelines-0.0.22.data/data/param2sdrf.yml' 2022-11-23T08:04:48,396 adding 'sdrf_pipelines-0.0.22.data/data/unimod.xml' 2022-11-23T08:04:48,452 adding 'sdrf_pipelines-0.0.22.dist-info/LICENSE' 2022-11-23T08:04:48,456 adding 'sdrf_pipelines-0.0.22.dist-info/METADATA' 2022-11-23T08:04:48,458 adding 'sdrf_pipelines-0.0.22.dist-info/WHEEL' 2022-11-23T08:04:48,460 adding 'sdrf_pipelines-0.0.22.dist-info/entry_points.txt' 2022-11-23T08:04:48,462 adding 'sdrf_pipelines-0.0.22.dist-info/top_level.txt' 2022-11-23T08:04:48,465 adding 'sdrf_pipelines-0.0.22.dist-info/RECORD' 2022-11-23T08:04:48,484 removing build/bdist.linux-armv7l/wheel 2022-11-23T08:04:48,519 /tmp/pip-build-env-nxsbcf87/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'sdrf_pipelines.sdrf_merge' as data is deprecated, please list it in `packages`. 2022-11-23T08:04:48,520 !! 2022-11-23T08:04:48,521 ############################ 2022-11-23T08:04:48,522 # Package would be ignored # 2022-11-23T08:04:48,522 ############################ 2022-11-23T08:04:48,522 Python recognizes 'sdrf_pipelines.sdrf_merge' as an importable package, 2022-11-23T08:04:48,523 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T08:04:48,523 'sdrf_pipelines.sdrf_merge' has been automatically added to the distribution only 2022-11-23T08:04:48,524 because it may contain data files, but this behavior is likely to change 2022-11-23T08:04:48,524 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T08:04:48,525 Please make sure that 'sdrf_pipelines.sdrf_merge' is included as a package by using 2022-11-23T08:04:48,526 the `packages` configuration field or the proper discovery methods 2022-11-23T08:04:48,526 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T08:04:48,527 instead of `find_packages(...)`/`find:`). 2022-11-23T08:04:48,528 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T08:04:48,528 documentation page. 2022-11-23T08:04:48,530 !! 2022-11-23T08:04:48,531 check.warn(importable) 2022-11-23T08:04:48,745 Building wheel for sdrf-pipelines (pyproject.toml): finished with status 'done' 2022-11-23T08:04:48,780 Created wheel for sdrf-pipelines: filename=sdrf_pipelines-0.0.22-py3-none-any.whl size=450663 sha256=8347b2bdc0da7befe534c78ab139e4b71c43292fcd15254bd662f99f0e16df91 2022-11-23T08:04:48,782 Stored in directory: /tmp/pip-ephem-wheel-cache-z2463osi/wheels/e0/37/45/f8e6f7387194f805ee43aa29cfb1d16adee77b5aac03c86553 2022-11-23T08:04:48,814 Successfully built sdrf-pipelines 2022-11-23T08:04:48,856 Removed build tracker: '/tmp/pip-build-tracker-oa01yw1w'