2022-11-23T13:50:59,033 Created temporary directory: /tmp/pip-ephem-wheel-cache-nud9e37c 2022-11-23T13:50:59,038 Created temporary directory: /tmp/pip-build-tracker-mooufkm1 2022-11-23T13:50:59,039 Initialized build tracking at /tmp/pip-build-tracker-mooufkm1 2022-11-23T13:50:59,039 Created build tracker: /tmp/pip-build-tracker-mooufkm1 2022-11-23T13:50:59,039 Entered build tracker: /tmp/pip-build-tracker-mooufkm1 2022-11-23T13:50:59,041 Created temporary directory: /tmp/pip-wheel-ckrn88z7 2022-11-23T13:50:59,048 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-23T13:50:59,054 Created temporary directory: /tmp/pip-ephem-wheel-cache-5qibpa3n 2022-11-23T13:50:59,111 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-23T13:50:59,118 2 location(s) to search for versions of sigprofilerassignment: 2022-11-23T13:50:59,118 * https://pypi.org/simple/sigprofilerassignment/ 2022-11-23T13:50:59,118 * https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-23T13:50:59,119 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2022-11-23T13:50:59,120 Getting page https://pypi.org/simple/sigprofilerassignment/ 2022-11-23T13:50:59,123 Found index url https://pypi.org/simple 2022-11-23T13:50:59,355 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2022-11-23T13:50:59,374 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,375 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2022-11-23T13:50:59,376 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,376 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2022-11-23T13:50:59,377 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,378 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2022-11-23T13:50:59,378 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,379 Found link https://files.pythonhosted.org/packages/79/c4/ed14da5d80f43e136c7638db1341dda950f510b9e283f3233a8aa7aabf32/SigProfilerAssignment-0.0.5.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.5 2022-11-23T13:50:59,379 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/66/ab/85f6ffb88701a726aa49666e007b52dbd3de21f036a6b8c2ebdeb9f1e462/SigProfilerAssignment-0.0.6-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,380 Found link https://files.pythonhosted.org/packages/03/d8/b24045855eff43a91cf7756c96f110b790d103bd1df87f05c0986da04d0b/SigProfilerAssignment-0.0.6.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.6 2022-11-23T13:50:59,381 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/7c/81/57fe9bf47f15fb98781753a9cd3b3614f09d5c53e359bde0b62d8ecc25eb/SigProfilerAssignment-0.0.7-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,381 Found link https://files.pythonhosted.org/packages/50/e5/0606e29d66a591712f8e43b9d2550f9d3c8a7c23b2720149f80424219418/SigProfilerAssignment-0.0.7.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.7 2022-11-23T13:50:59,382 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/b5/e6/bf7281f0f954a6108054031ca43038d77c11074c97615710dfe0d6153edb/SigProfilerAssignment-0.0.8-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,383 Found link https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.8 2022-11-23T13:50:59,383 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/8d/ce/b3007d83ebaad0c5f16d68fc825dcce815d70081f135a950caf8b6a21972/SigProfilerAssignment-0.0.9-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,384 Found link https://files.pythonhosted.org/packages/5e/3a/5f620dd06f38b080d13d9c07487b1f927908e895c6d0078fd31e1774d819/SigProfilerAssignment-0.0.9.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.9 2022-11-23T13:50:59,384 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/37/7a/96090afea439df630b92520cef7d519d8acda4727d2d36f54cd4e8f734b6/SigProfilerAssignment-0.0.10-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,385 Found link https://files.pythonhosted.org/packages/ef/e2/fb950814a244e3783cd12bba4337ead95882b7adbf8b6100faae9281d8e8/SigProfilerAssignment-0.0.10.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.10 2022-11-23T13:50:59,386 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/98/65/b438b8c59fd28a2b6fe3a8650439d5e4dd12c376f0edddf22f20552920e5/SigProfilerAssignment-0.0.11-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,386 Found link https://files.pythonhosted.org/packages/ad/66/15131e6cc8d00269785242b03348f6b514425db74595f95906dad17abd9c/SigProfilerAssignment-0.0.11.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.11 2022-11-23T13:50:59,387 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5d/97/1b9875b256bc8e72bf1d7ba5025d6fcef5ba852f8332249d7f1c2ca4cdbb/SigProfilerAssignment-0.0.12-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,388 Found link https://files.pythonhosted.org/packages/28/37/2ec84d1c1ad80c2a61214e735ae775d41a35ef5af4c79fbfc1a304003819/SigProfilerAssignment-0.0.12.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.12 2022-11-23T13:50:59,388 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/7a/8e/e93001206882013104acbe9fbc9ee58b4422d73e080574da3e317e6c48d4/SigProfilerAssignment-0.0.13-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,389 Found link https://files.pythonhosted.org/packages/79/4b/37b6494cb0837d58bed9f7fc4b41aede34738e6dacd0b704d04d621d99cb/SigProfilerAssignment-0.0.13.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.13 2022-11-23T13:50:59,390 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/25/4d/81722d3aa1c6de8c9cba482989721c821f1d53f2d113ad54eb18c571cf03/SigProfilerAssignment-0.0.14-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,390 Found link https://files.pythonhosted.org/packages/7d/14/76a03a916457f58fc7af023152a5ebab12e9c5c196e7a431a8dff5fd5713/SigProfilerAssignment-0.0.14.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.14 2022-11-23T13:50:59,391 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/58/11/55f11d7b91ceed9ef2f195917f4d6523936f2cc801b9acc87022e1c53a3c/SigProfilerAssignment-0.0.15-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,391 Found link https://files.pythonhosted.org/packages/2b/ab/ef0c797d615a159f3ea2a2430b47f4479b598f0f93b25b5d23e05462c9ba/SigProfilerAssignment-0.0.15.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.15 2022-11-23T13:50:59,392 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d8/27/852104d5cca8ece5586c5bbccd402376b51d1255460eb67540ae51a234d0/SigProfilerAssignment-0.0.16-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,393 Found link https://files.pythonhosted.org/packages/09/cf/960349c3a4e334416759693bdf0fbe9e03671da4866c0cb51cd83e70e887/SigProfilerAssignment-0.0.16.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.16 2022-11-23T13:50:59,393 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/a5/03/4c78706258493def8af88439f110859e6cdc31a35c004ac3dcc993bb812d/SigProfilerAssignment-0.0.17-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,394 Found link https://files.pythonhosted.org/packages/01/95/3c7b1893786851e46e67efd092c7f6312c935cfae567f3c326e7408821c9/SigProfilerAssignment-0.0.17.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.17 2022-11-23T13:50:59,394 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/73/c586f0e9b2bb41a67c64605f214499ca755929f4bf4092d11a28cd2982b7/SigProfilerAssignment-0.0.18-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,395 Found link https://files.pythonhosted.org/packages/30/76/b2ac20625c7d23ebf959681df3436174a0b61be964d8c74829c42ab1b88f/SigProfilerAssignment-0.0.18.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.18 2022-11-23T13:50:59,396 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/57/a1/2d3eb976254038c00cb1c0648a1c56f9e6ad8ad9c9cc93181fc2cc664856/SigProfilerAssignment-0.0.19-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-23T13:50:59,396 Found link https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.19 2022-11-23T13:50:59,397 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-23T13:50:59,398 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-23T13:50:59,400 Found index url https://www.piwheels.org/simple 2022-11-23T13:51:03,861 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2022-11-23T13:51:03,876 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.18-py3-none-any.whl#sha256=e418f8786c23f1cdb13f1eec87b2a79361574a9d43b6cb1860c3faa2e51655f7 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,877 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.17-py3-none-any.whl#sha256=304ecece34990333225e464b03ac343c85c0438841eec003a5c97261ce36ce2e (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,877 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.16-py3-none-any.whl#sha256=fe88a9d347f7bbfe244efda9de782c675720189ebcc163479e6879a25631e8a1 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,878 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.15-py3-none-any.whl#sha256=64d632a0d656da7ac327b63d005473ee9287d85ae6e01dd419693484569636cb (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,878 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.14-py3-none-any.whl#sha256=a42cc5a6164208e98344e1d919eabcff6f136ea14ea66ff1c694a17f58cd5f0c (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,879 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.13-py3-none-any.whl#sha256=9b0b469c0836a9f1252be3af5527d478eecbf7dbcb1ec2bd5e4eb9339db8bc81 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,880 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.12-py3-none-any.whl#sha256=45b7b470b0381278049e3f6e11c6cb5ce936d452aafe609804cb7be32aec2d70 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,880 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.11-py3-none-any.whl#sha256=574046385266b88bb9ccbd1ca51b8051d5f54ab3ae93a165cbb81f5fba067103 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,881 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.10-py3-none-any.whl#sha256=f5083ed4028fafdeb7af1ba973a6cb22db5afd86d9dd2c752df7120eb4dcd195 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,881 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.9-py3-none-any.whl#sha256=03dd4968c3c9217d18cb33408e92f87305ef617bbb4887f8524dd596c943dec4 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,882 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.8-py3-none-any.whl#sha256=3f5230a1c23cb6df61406f2401c9d4fea5d655bb7f5799b37bb02288aab2e6d5 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,882 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.7-py3-none-any.whl#sha256=6db83fcf7669f563330e9c8b69ef89320b6bee775bb5b7c13f6fa480b75c6c6e (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,883 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.6-py3-none-any.whl#sha256=3c24df444dbc2dca805d2ad2027411960b6c5d16edef5752b8cce431600f7bd4 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,883 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.5-py3-none-any.whl#sha256=8dcda60a710617760d56dff2ae80b5a534397648f276af1399674bad57c9fb12 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,884 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.4-py3-none-any.whl#sha256=dfd3c27005fbbcd5ec1c7991f5b1e8904b2ce17d5bdd55291c2ea9132a6eadbe (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,884 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,885 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-23T13:51:03,886 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-23T13:51:03,886 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2022-11-23T13:51:03,925 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2022-11-23T13:51:03,955 Collecting sigprofilerassignment==0.0.19 2022-11-23T13:51:03,960 Created temporary directory: /tmp/pip-unpack-uu4ovc89 2022-11-23T13:51:04,358 Downloading SigProfilerAssignment-0.0.19.tar.gz (4.6 MB) 2022-11-23T13:51:07,317 Added sigprofilerassignment==0.0.19 from https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz to build tracker '/tmp/pip-build-tracker-mooufkm1' 2022-11-23T13:51:07,321 Running setup.py (path:/tmp/pip-wheel-ckrn88z7/sigprofilerassignment_4fb73a05856f4bc6a96137eeefc1524b/setup.py) egg_info for package sigprofilerassignment 2022-11-23T13:51:07,322 Created temporary directory: /tmp/pip-pip-egg-info-i9kyeh65 2022-11-23T13:51:07,323 Preparing metadata (setup.py): started 2022-11-23T13:51:07,325 Running command python setup.py egg_info 2022-11-23T13:51:10,178 running egg_info 2022-11-23T13:51:10,183 creating /tmp/pip-pip-egg-info-i9kyeh65/SigProfilerAssignment.egg-info 2022-11-23T13:51:10,268 writing /tmp/pip-pip-egg-info-i9kyeh65/SigProfilerAssignment.egg-info/PKG-INFO 2022-11-23T13:51:10,274 writing dependency_links to /tmp/pip-pip-egg-info-i9kyeh65/SigProfilerAssignment.egg-info/dependency_links.txt 2022-11-23T13:51:10,280 writing requirements to /tmp/pip-pip-egg-info-i9kyeh65/SigProfilerAssignment.egg-info/requires.txt 2022-11-23T13:51:10,281 writing top-level names to /tmp/pip-pip-egg-info-i9kyeh65/SigProfilerAssignment.egg-info/top_level.txt 2022-11-23T13:51:10,284 writing manifest file '/tmp/pip-pip-egg-info-i9kyeh65/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-23T13:51:10,544 reading manifest file '/tmp/pip-pip-egg-info-i9kyeh65/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-23T13:51:10,548 reading manifest template 'MANIFEST.in' 2022-11-23T13:51:10,553 warning: no files found matching 'SigProfilerAssignment/data/vcftest/*' 2022-11-23T13:51:10,581 adding license file 'LICENSE.txt' 2022-11-23T13:51:10,600 writing manifest file '/tmp/pip-pip-egg-info-i9kyeh65/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-23T13:51:10,807 Preparing metadata (setup.py): finished with status 'done' 2022-11-23T13:51:10,822 Source in /tmp/pip-wheel-ckrn88z7/sigprofilerassignment_4fb73a05856f4bc6a96137eeefc1524b has version 0.0.19, which satisfies requirement sigprofilerassignment==0.0.19 from https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz 2022-11-23T13:51:10,824 Removed sigprofilerassignment==0.0.19 from https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz from build tracker '/tmp/pip-build-tracker-mooufkm1' 2022-11-23T13:51:10,836 Created temporary directory: /tmp/pip-unpack-xybr99cm 2022-11-23T13:51:10,837 Building wheels for collected packages: sigprofilerassignment 2022-11-23T13:51:10,847 Created temporary directory: /tmp/pip-wheel-edb5aiv7 2022-11-23T13:51:10,847 Building wheel for sigprofilerassignment (setup.py): started 2022-11-23T13:51:10,849 Destination directory: /tmp/pip-wheel-edb5aiv7 2022-11-23T13:51:10,850 Running command python setup.py bdist_wheel 2022-11-23T13:51:13,699 running bdist_wheel 2022-11-23T13:51:14,547 running build 2022-11-23T13:51:14,547 running build_py 2022-11-23T13:51:14,639 creating build 2022-11-23T13:51:14,640 creating build/lib 2022-11-23T13:51:14,641 creating build/lib/SigProfilerAssignment 2022-11-23T13:51:14,643 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2022-11-23T13:51:14,649 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2022-11-23T13:51:14,655 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2022-11-23T13:51:14,658 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2022-11-23T13:51:14,663 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2022-11-23T13:51:14,666 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2022-11-23T13:51:14,668 running egg_info 2022-11-23T13:51:14,908 writing SigProfilerAssignment.egg-info/PKG-INFO 2022-11-23T13:51:14,913 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2022-11-23T13:51:14,917 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2022-11-23T13:51:14,919 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2022-11-23T13:51:15,008 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-23T13:51:15,021 reading manifest template 'MANIFEST.in' 2022-11-23T13:51:15,025 warning: no files found matching 'SigProfilerAssignment/data/vcftest/*' 2022-11-23T13:51:15,046 adding license file 'LICENSE.txt' 2022-11-23T13:51:15,072 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-23T13:51:15,077 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,078 !! 2022-11-23T13:51:15,079 ############################ 2022-11-23T13:51:15,079 # Package would be ignored # 2022-11-23T13:51:15,079 ############################ 2022-11-23T13:51:15,080 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package, 2022-11-23T13:51:15,080 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,081 'SigProfilerAssignment.DecompositionPlots' has been automatically added to the distribution only 2022-11-23T13:51:15,081 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,081 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,082 Please make sure that 'SigProfilerAssignment.DecompositionPlots' is included as a package by using 2022-11-23T13:51:15,082 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,083 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,083 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,084 documentation page. 2022-11-23T13:51:15,084 !! 2022-11-23T13:51:15,085 check.warn(importable) 2022-11-23T13:51:15,086 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.reference_files' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,086 !! 2022-11-23T13:51:15,087 ############################ 2022-11-23T13:51:15,087 # Package would be ignored # 2022-11-23T13:51:15,088 ############################ 2022-11-23T13:51:15,088 Python recognizes 'SigProfilerAssignment.DecompositionPlots.reference_files' as an importable package, 2022-11-23T13:51:15,088 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,089 'SigProfilerAssignment.DecompositionPlots.reference_files' has been automatically added to the distribution only 2022-11-23T13:51:15,089 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,089 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,090 Please make sure that 'SigProfilerAssignment.DecompositionPlots.reference_files' is included as a package by using 2022-11-23T13:51:15,090 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,091 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,091 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,092 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,092 documentation page. 2022-11-23T13:51:15,093 !! 2022-11-23T13:51:15,093 check.warn(importable) 2022-11-23T13:51:15,094 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.reference_files.Fonts' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,094 !! 2022-11-23T13:51:15,095 ############################ 2022-11-23T13:51:15,095 # Package would be ignored # 2022-11-23T13:51:15,095 ############################ 2022-11-23T13:51:15,096 Python recognizes 'SigProfilerAssignment.DecompositionPlots.reference_files.Fonts' as an importable package, 2022-11-23T13:51:15,096 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,097 'SigProfilerAssignment.DecompositionPlots.reference_files.Fonts' has been automatically added to the distribution only 2022-11-23T13:51:15,097 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,097 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,098 Please make sure that 'SigProfilerAssignment.DecompositionPlots.reference_files.Fonts' is included as a package by using 2022-11-23T13:51:15,098 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,098 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,099 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,099 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,100 documentation page. 2022-11-23T13:51:15,100 !! 2022-11-23T13:51:15,101 check.warn(importable) 2022-11-23T13:51:15,101 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,102 !! 2022-11-23T13:51:15,102 ############################ 2022-11-23T13:51:15,103 # Package would be ignored # 2022-11-23T13:51:15,103 ############################ 2022-11-23T13:51:15,103 Python recognizes 'SigProfilerAssignment.data' as an importable package, 2022-11-23T13:51:15,104 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,104 'SigProfilerAssignment.data' has been automatically added to the distribution only 2022-11-23T13:51:15,104 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,105 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,105 Please make sure that 'SigProfilerAssignment.data' is included as a package by using 2022-11-23T13:51:15,106 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,106 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,106 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,107 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,107 documentation page. 2022-11-23T13:51:15,108 !! 2022-11-23T13:51:15,109 check.warn(importable) 2022-11-23T13:51:15,109 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,109 !! 2022-11-23T13:51:15,110 ############################ 2022-11-23T13:51:15,110 # Package would be ignored # 2022-11-23T13:51:15,111 ############################ 2022-11-23T13:51:15,111 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package, 2022-11-23T13:51:15,111 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,112 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' has been automatically added to the distribution only 2022-11-23T13:51:15,112 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,112 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,113 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is included as a package by using 2022-11-23T13:51:15,113 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,114 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,114 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,114 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,115 documentation page. 2022-11-23T13:51:15,116 !! 2022-11-23T13:51:15,116 check.warn(importable) 2022-11-23T13:51:15,117 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,117 !! 2022-11-23T13:51:15,118 ############################ 2022-11-23T13:51:15,118 # Package would be ignored # 2022-11-23T13:51:15,118 ############################ 2022-11-23T13:51:15,119 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package, 2022-11-23T13:51:15,119 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,120 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' has been automatically added to the distribution only 2022-11-23T13:51:15,120 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,120 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,121 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is included as a package by using 2022-11-23T13:51:15,121 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,121 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,121 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,122 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,122 documentation page. 2022-11-23T13:51:15,123 !! 2022-11-23T13:51:15,124 check.warn(importable) 2022-11-23T13:51:15,124 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm10' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,124 !! 2022-11-23T13:51:15,125 ############################ 2022-11-23T13:51:15,125 # Package would be ignored # 2022-11-23T13:51:15,126 ############################ 2022-11-23T13:51:15,126 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package, 2022-11-23T13:51:15,126 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,127 'SigProfilerAssignment.data.Reference_Signatures.mm10' has been automatically added to the distribution only 2022-11-23T13:51:15,127 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,128 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,128 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is included as a package by using 2022-11-23T13:51:15,128 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,129 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,129 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,130 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,130 documentation page. 2022-11-23T13:51:15,131 !! 2022-11-23T13:51:15,131 check.warn(importable) 2022-11-23T13:51:15,132 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm9' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,132 !! 2022-11-23T13:51:15,133 ############################ 2022-11-23T13:51:15,133 # Package would be ignored # 2022-11-23T13:51:15,133 ############################ 2022-11-23T13:51:15,134 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package, 2022-11-23T13:51:15,134 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,134 'SigProfilerAssignment.data.Reference_Signatures.mm9' has been automatically added to the distribution only 2022-11-23T13:51:15,135 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,135 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,135 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is included as a package by using 2022-11-23T13:51:15,136 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,136 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,136 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,137 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,137 documentation page. 2022-11-23T13:51:15,138 !! 2022-11-23T13:51:15,139 check.warn(importable) 2022-11-23T13:51:15,139 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.rn6' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,139 !! 2022-11-23T13:51:15,140 ############################ 2022-11-23T13:51:15,140 # Package would be ignored # 2022-11-23T13:51:15,141 ############################ 2022-11-23T13:51:15,141 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package, 2022-11-23T13:51:15,141 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,142 'SigProfilerAssignment.data.Reference_Signatures.rn6' has been automatically added to the distribution only 2022-11-23T13:51:15,142 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,142 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,143 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is included as a package by using 2022-11-23T13:51:15,143 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,144 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,145 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,145 documentation page. 2022-11-23T13:51:15,146 !! 2022-11-23T13:51:15,147 check.warn(importable) 2022-11-23T13:51:15,147 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.cnv_input' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,148 !! 2022-11-23T13:51:15,149 ############################ 2022-11-23T13:51:15,149 # Package would be ignored # 2022-11-23T13:51:15,150 ############################ 2022-11-23T13:51:15,150 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package, 2022-11-23T13:51:15,150 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,151 'SigProfilerAssignment.data.tests.cnv_input' has been automatically added to the distribution only 2022-11-23T13:51:15,151 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,152 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,153 Please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is included as a package by using 2022-11-23T13:51:15,154 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,154 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,154 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,155 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,155 documentation page. 2022-11-23T13:51:15,156 !! 2022-11-23T13:51:15,158 check.warn(importable) 2022-11-23T13:51:15,159 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.txt_input' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,159 !! 2022-11-23T13:51:15,160 ############################ 2022-11-23T13:51:15,160 # Package would be ignored # 2022-11-23T13:51:15,161 ############################ 2022-11-23T13:51:15,161 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package, 2022-11-23T13:51:15,161 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,162 'SigProfilerAssignment.data.tests.txt_input' has been automatically added to the distribution only 2022-11-23T13:51:15,162 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,163 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,164 Please make sure that 'SigProfilerAssignment.data.tests.txt_input' is included as a package by using 2022-11-23T13:51:15,165 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,165 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,165 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,166 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,166 documentation page. 2022-11-23T13:51:15,167 !! 2022-11-23T13:51:15,168 check.warn(importable) 2022-11-23T13:51:15,169 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.vcf_input' as data is deprecated, please list it in `packages`. 2022-11-23T13:51:15,170 !! 2022-11-23T13:51:15,171 ############################ 2022-11-23T13:51:15,171 # Package would be ignored # 2022-11-23T13:51:15,171 ############################ 2022-11-23T13:51:15,172 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package, 2022-11-23T13:51:15,172 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T13:51:15,173 'SigProfilerAssignment.data.tests.vcf_input' has been automatically added to the distribution only 2022-11-23T13:51:15,174 because it may contain data files, but this behavior is likely to change 2022-11-23T13:51:15,175 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T13:51:15,175 Please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is included as a package by using 2022-11-23T13:51:15,176 the `packages` configuration field or the proper discovery methods 2022-11-23T13:51:15,176 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T13:51:15,177 instead of `find_packages(...)`/`find:`). 2022-11-23T13:51:15,177 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T13:51:15,177 documentation page. 2022-11-23T13:51:15,179 !! 2022-11-23T13:51:15,180 check.warn(importable) 2022-11-23T13:51:15,181 creating build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:15,181 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:15,181 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:15,182 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:15,182 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:15,182 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:15,183 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:15,183 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:15,183 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:15,199 creating build/lib/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-23T13:51:15,200 copying SigProfilerAssignment/DecompositionPlots/reference_files/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-23T13:51:15,205 copying SigProfilerAssignment/DecompositionPlots/reference_files/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-23T13:51:15,209 creating build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts 2022-11-23T13:51:15,211 copying SigProfilerAssignment/DecompositionPlots/reference_files/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts 2022-11-23T13:51:15,253 creating build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,254 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,259 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,262 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,267 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,271 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,284 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,308 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,312 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,316 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,321 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,326 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2022-11-23T13:51:15,334 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2022-11-23T13:51:15,335 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,337 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,342 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,349 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,355 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,363 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,368 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,374 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,380 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,392 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,404 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,409 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,415 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,422 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,432 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,444 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,456 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,461 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,466 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,471 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,476 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,488 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,499 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,504 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,509 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,515 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,528 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:15,539 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,540 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,546 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,552 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,559 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,566 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,571 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,577 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,589 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,600 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,605 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,610 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,622 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,635 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,641 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,645 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,658 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,672 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,677 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,683 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,695 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:15,707 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,709 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,715 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,722 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,729 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,737 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,743 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,748 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,760 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,772 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,777 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,782 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,793 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,804 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,809 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,814 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,826 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,838 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,843 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,848 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,859 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:15,870 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,871 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,877 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,883 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,890 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,897 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,902 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,907 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,918 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,930 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,935 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,941 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,953 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,966 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,971 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,977 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:15,988 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,001 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,006 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,011 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,022 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,032 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,033 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,040 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,047 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,053 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,060 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,065 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,070 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,081 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,092 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,097 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,102 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,113 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,125 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,137 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,141 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,153 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,165 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,170 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,175 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,185 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:16,195 creating build/lib/SigProfilerAssignment/data/tests 2022-11-23T13:51:16,196 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2022-11-23T13:51:16,198 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2022-11-23T13:51:16,221 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2022-11-23T13:51:16,223 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-11-23T13:51:16,229 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-11-23T13:51:16,233 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,235 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,242 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,254 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,265 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,282 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,390 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-23T13:51:16,391 setuptools.SetuptoolsDeprecationWarning, 2022-11-23T13:51:16,477 installing to build/bdist.linux-armv7l/wheel 2022-11-23T13:51:16,477 running install 2022-11-23T13:51:16,540 running install_lib 2022-11-23T13:51:16,632 creating build/bdist.linux-armv7l 2022-11-23T13:51:16,633 creating build/bdist.linux-armv7l/wheel 2022-11-23T13:51:16,636 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-23T13:51:16,639 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:16,641 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-23T13:51:16,643 copying build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-23T13:51:16,649 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts 2022-11-23T13:51:16,650 copying build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files/Fonts 2022-11-23T13:51:16,698 copying build/lib/SigProfilerAssignment/DecompositionPlots/reference_files/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/reference_files 2022-11-23T13:51:16,701 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:16,706 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:16,710 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:16,715 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:16,719 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:16,723 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:16,728 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:16,732 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-23T13:51:16,744 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-23T13:51:16,749 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-23T13:51:16,757 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-23T13:51:16,762 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,764 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,768 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,791 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,796 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,799 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,805 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,810 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,815 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2022-11-23T13:51:16,818 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2022-11-23T13:51:16,819 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2022-11-23T13:51:16,842 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-11-23T13:51:16,843 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-11-23T13:51:16,847 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-11-23T13:51:16,852 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,854 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,865 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,871 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,882 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,899 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-23T13:51:16,909 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,913 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,923 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,926 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-23T13:51:16,930 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2022-11-23T13:51:16,933 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,935 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,940 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,944 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,951 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,962 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,973 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,978 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,982 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:16,987 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,000 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,005 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,012 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,023 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,028 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,035 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,042 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,054 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,060 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,074 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,091 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-23T13:51:17,103 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,105 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,110 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,120 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,133 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,139 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,145 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,157 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,164 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,169 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,174 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,179 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,184 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,195 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,202 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,207 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,218 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,223 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,228 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,240 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,252 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-23T13:51:17,267 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,269 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,281 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,294 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,305 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,309 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,316 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,321 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,326 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,330 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,341 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,346 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,358 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,369 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,378 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,383 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,388 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,393 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,397 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,402 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,408 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-23T13:51:17,422 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,423 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,428 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,439 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,449 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,460 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,465 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,471 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,475 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,480 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,485 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,496 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,502 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,516 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,520 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,528 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,539 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,544 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,549 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,553 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,559 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,570 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,581 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,586 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,591 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,595 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,599 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-23T13:51:17,610 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,611 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,618 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,628 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,639 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,644 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,649 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,659 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,664 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,676 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,686 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,698 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,709 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,713 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,719 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,724 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,731 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,735 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,742 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,753 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,759 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-23T13:51:17,763 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-23T13:51:17,769 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-23T13:51:17,772 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-23T13:51:17,774 running install_egg_info 2022-11-23T13:51:17,873 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.19-py3.7.egg-info 2022-11-23T13:51:17,898 running install_scripts 2022-11-23T13:51:18,081 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-11-23T13:51:18,090 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.19.dist-info/WHEEL 2022-11-23T13:51:18,094 creating '/tmp/pip-wheel-edb5aiv7/SigProfilerAssignment-0.0.19-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-23T13:51:18,099 adding 'SigProfilerAssignment/Analyzer.py' 2022-11-23T13:51:18,102 adding 'SigProfilerAssignment/__init__.py' 2022-11-23T13:51:18,114 adding 'SigProfilerAssignment/decompose_subroutines.py' 2022-11-23T13:51:18,121 adding 'SigProfilerAssignment/decomposition.py' 2022-11-23T13:51:18,130 adding 'SigProfilerAssignment/single_sample.py' 2022-11-23T13:51:18,133 adding 'SigProfilerAssignment/version.py' 2022-11-23T13:51:18,138 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2022-11-23T13:51:18,142 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2022-11-23T13:51:18,147 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2022-11-23T13:51:18,151 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2022-11-23T13:51:18,155 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2022-11-23T13:51:18,159 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2022-11-23T13:51:18,164 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2022-11-23T13:51:18,190 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2022-11-23T13:51:18,199 adding 'SigProfilerAssignment/DecompositionPlots/reference_files/Accolade_fermante.png' 2022-11-23T13:51:18,201 adding 'SigProfilerAssignment/DecompositionPlots/reference_files/CREDIT.md' 2022-11-23T13:51:18,476 adding 'SigProfilerAssignment/DecompositionPlots/reference_files/Fonts/Arial Bold.ttf' 2022-11-23T13:51:18,496 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2022-11-23T13:51:18,498 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2022-11-23T13:51:18,506 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2022-11-23T13:51:18,509 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2022-11-23T13:51:18,544 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2022-11-23T13:51:18,651 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2022-11-23T13:51:18,663 adding 'SigProfilerAssignment/data/Samples.txt' 2022-11-23T13:51:18,667 adding 'SigProfilerAssignment/data/csvexample.csv' 2022-11-23T13:51:18,672 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2022-11-23T13:51:18,679 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2022-11-23T13:51:18,713 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2022-11-23T13:51:18,725 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2022-11-23T13:51:18,747 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2022-11-23T13:51:18,768 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2022-11-23T13:51:18,799 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2022-11-23T13:51:18,807 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2022-11-23T13:51:18,815 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2022-11-23T13:51:18,829 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2022-11-23T13:51:18,914 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2022-11-23T13:51:19,002 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2022-11-23T13:51:19,012 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2022-11-23T13:51:19,020 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2022-11-23T13:51:19,034 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2022-11-23T13:51:19,088 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2022-11-23T13:51:19,182 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2022-11-23T13:51:19,278 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2022-11-23T13:51:19,290 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2022-11-23T13:51:19,297 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2022-11-23T13:51:19,305 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2022-11-23T13:51:19,319 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2022-11-23T13:51:19,412 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2022-11-23T13:51:19,509 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2022-11-23T13:51:19,519 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2022-11-23T13:51:19,527 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2022-11-23T13:51:19,541 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2022-11-23T13:51:19,619 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2022-11-23T13:51:19,701 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2022-11-23T13:51:19,726 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2022-11-23T13:51:19,748 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2022-11-23T13:51:19,779 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2022-11-23T13:51:19,810 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2022-11-23T13:51:19,818 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2022-11-23T13:51:19,826 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2022-11-23T13:51:19,911 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2022-11-23T13:51:19,999 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2022-11-23T13:51:20,009 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2022-11-23T13:51:20,017 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2022-11-23T13:51:20,110 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2022-11-23T13:51:20,206 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2022-11-23T13:51:20,217 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2022-11-23T13:51:20,224 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2022-11-23T13:51:20,319 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2022-11-23T13:51:20,416 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2022-11-23T13:51:20,427 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2022-11-23T13:51:20,434 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2022-11-23T13:51:20,513 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2022-11-23T13:51:20,595 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2022-11-23T13:51:20,620 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2022-11-23T13:51:20,642 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2022-11-23T13:51:20,673 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2022-11-23T13:51:20,704 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2022-11-23T13:51:20,712 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2022-11-23T13:51:20,720 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2022-11-23T13:51:20,806 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2022-11-23T13:51:20,894 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2022-11-23T13:51:20,904 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2022-11-23T13:51:20,912 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2022-11-23T13:51:21,005 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2022-11-23T13:51:21,101 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2022-11-23T13:51:21,112 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2022-11-23T13:51:21,119 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2022-11-23T13:51:21,215 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2022-11-23T13:51:21,313 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2022-11-23T13:51:21,323 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2022-11-23T13:51:21,331 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2022-11-23T13:51:21,411 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2022-11-23T13:51:21,493 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2022-11-23T13:51:21,518 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2022-11-23T13:51:21,540 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2022-11-23T13:51:21,571 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2022-11-23T13:51:21,602 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2022-11-23T13:51:21,611 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2022-11-23T13:51:21,618 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2022-11-23T13:51:21,704 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2022-11-23T13:51:21,792 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2022-11-23T13:51:21,802 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2022-11-23T13:51:21,810 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2022-11-23T13:51:21,903 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2022-11-23T13:51:21,999 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2022-11-23T13:51:22,021 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2022-11-23T13:51:22,029 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2022-11-23T13:51:22,124 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2022-11-23T13:51:22,222 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2022-11-23T13:51:22,233 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2022-11-23T13:51:22,245 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2022-11-23T13:51:22,324 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2022-11-23T13:51:22,407 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2022-11-23T13:51:22,432 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2022-11-23T13:51:22,454 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2022-11-23T13:51:22,484 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2022-11-23T13:51:22,515 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2022-11-23T13:51:22,523 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2022-11-23T13:51:22,531 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2022-11-23T13:51:22,617 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2022-11-23T13:51:22,705 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2022-11-23T13:51:22,715 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2022-11-23T13:51:22,723 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2022-11-23T13:51:22,816 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2022-11-23T13:51:22,911 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2022-11-23T13:51:22,922 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2022-11-23T13:51:22,929 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2022-11-23T13:51:23,024 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2022-11-23T13:51:23,122 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2022-11-23T13:51:23,132 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2022-11-23T13:51:23,140 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2022-11-23T13:51:23,221 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2022-11-23T13:51:23,303 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2022-11-23T13:51:23,470 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2022-11-23T13:51:23,483 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2022-11-23T13:51:23,486 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt' 2022-11-23T13:51:23,502 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2022-11-23T13:51:23,552 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2022-11-23T13:51:23,601 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2022-11-23T13:51:23,685 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2022-11-23T13:51:23,739 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2022-11-23T13:51:23,746 adding 'SigProfilerAssignment-0.0.19.dist-info/LICENSE.txt' 2022-11-23T13:51:23,750 adding 'SigProfilerAssignment-0.0.19.dist-info/METADATA' 2022-11-23T13:51:23,752 adding 'SigProfilerAssignment-0.0.19.dist-info/WHEEL' 2022-11-23T13:51:23,754 adding 'SigProfilerAssignment-0.0.19.dist-info/top_level.txt' 2022-11-23T13:51:23,760 adding 'SigProfilerAssignment-0.0.19.dist-info/RECORD' 2022-11-23T13:51:23,909 removing build/bdist.linux-armv7l/wheel 2022-11-23T13:51:24,242 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2022-11-23T13:51:24,386 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.0.19-py3-none-any.whl size=4664099 sha256=03f4c6dbbfcf41dced93e810201677be4061018a225f413d6bdd1cfc36ceca4a 2022-11-23T13:51:24,388 Stored in directory: /tmp/pip-ephem-wheel-cache-5qibpa3n/wheels/3f/94/e5/603d1fb2fe9dfc117f39ffdeeabe89addf147e9fa0746e3a0a 2022-11-23T13:51:24,434 Successfully built sigprofilerassignment 2022-11-23T13:51:24,798 Removed build tracker: '/tmp/pip-build-tracker-mooufkm1'