2022-11-23T15:18:34,135 Created temporary directory: /tmp/pip-ephem-wheel-cache-1z9x6b_1 2022-11-23T15:18:34,140 Created temporary directory: /tmp/pip-build-tracker-1thjld2u 2022-11-23T15:18:34,140 Initialized build tracking at /tmp/pip-build-tracker-1thjld2u 2022-11-23T15:18:34,141 Created build tracker: /tmp/pip-build-tracker-1thjld2u 2022-11-23T15:18:34,141 Entered build tracker: /tmp/pip-build-tracker-1thjld2u 2022-11-23T15:18:34,142 Created temporary directory: /tmp/pip-wheel-bskui4z9 2022-11-23T15:18:34,150 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-23T15:18:34,155 Created temporary directory: /tmp/pip-ephem-wheel-cache-xhqtp8b4 2022-11-23T15:18:34,205 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-23T15:18:34,213 2 location(s) to search for versions of ngpiris: 2022-11-23T15:18:34,213 * https://pypi.org/simple/ngpiris/ 2022-11-23T15:18:34,213 * https://www.piwheels.org/simple/ngpiris/ 2022-11-23T15:18:34,214 Fetching project page and analyzing links: https://pypi.org/simple/ngpiris/ 2022-11-23T15:18:34,215 Getting page https://pypi.org/simple/ngpiris/ 2022-11-23T15:18:34,218 Found index url https://pypi.org/simple 2022-11-23T15:18:34,413 Fetched page https://pypi.org/simple/ngpiris/ as application/vnd.pypi.simple.v1+json 2022-11-23T15:18:34,425 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/4d/6e/f08727e739b7a54f7449ab02313eb50cabb2a795c92f253cf17f18c75617/NGPIris-3.0.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,426 Found link https://files.pythonhosted.org/packages/78/19/bf5cc9159ce9a268be187a5bddf2544732e150c403caaba9bb72031a6d38/NGPIris-3.0.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.0 2022-11-23T15:18:34,427 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a1/28/41151a5e1b5f39a800959d061e7f95eaa000ec0f590194b904e8174d850b/NGPIris-3.0.1-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,429 Found link https://files.pythonhosted.org/packages/6f/3e/43198b86cf36f8cb67292f40fde6f413df7b7a3712292985f0c9825e685b/NGPIris-3.0.1.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.1 2022-11-23T15:18:34,429 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/19/f3/6b1617929c5001e2cff89989a25184e8027a613f0999f263c987a07ca753/NGPIris-3.0.2-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,431 Found link https://files.pythonhosted.org/packages/bb/d2/aad6af2472bf44ece65bf403e0a7c9b40f7e899967e196fd53f26825b4b8/NGPIris-3.0.2.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.2 2022-11-23T15:18:34,431 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/ae/54/d7573467205bc7e14294a954def7f8c2194be848c6324ddfc1698b34017b/NGPIris-3.0.3-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,433 Found link https://files.pythonhosted.org/packages/b3/61/71f9236acb7b62ce74a0bb298ebdf34cf03792730a70f1aef8522ad9b6b4/NGPIris-3.0.3.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.3 2022-11-23T15:18:34,433 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a5/9a/addadfcc2e15874ed368c96636b0364efb4c66d03325cdf759e846bf7535/NGPIris-3.2.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,435 Found link https://files.pythonhosted.org/packages/54/e0/4c980696e9d9ba08080acdb2fd9c10c5e2f91a9e9c637c05d16445d3885d/NGPIris-3.2.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.2.0 2022-11-23T15:18:34,435 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/e3/7c/f979667a67fcb64cc5f95350857bd8e23f41737c5258bd7adda601a6bcfd/NGPIris-3.4.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,437 Found link https://files.pythonhosted.org/packages/76/a0/0588bac324aa12b00f07b6f9908d0bbfa93ec2961cfaf43a25d2b03f417a/NGPIris-3.4.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.0 2022-11-23T15:18:34,437 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/48/39/46d2cc57267af9da79f26acf2fadb712b2241080ff7f05e10919b94e2e9e/NGPIris-3.4.3-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,439 Found link https://files.pythonhosted.org/packages/58/6c/b015ab5bc06ec4d827cde658e67d16da46f16f91a1c645ea93a2391e4801/NGPIris-3.4.3.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.3 2022-11-23T15:18:34,439 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/31/90/cc8020a6d267339b1dcfa92d7c2290871e5affa81ac3eeca7983ae0ea696/NGPIris-3.4.5-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,441 Found link https://files.pythonhosted.org/packages/d3/12/938ecca558cbab1d59d09d84ebcb3eed332b393f765729f0a17663e15e47/NGPIris-3.4.5.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.5 2022-11-23T15:18:34,441 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/06/d6/34055477d5dbd32c3bf419f4f1aa6fff245ba21ba57c86b6914894968fcd/NGPIris-3.4.8-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,443 Found link https://files.pythonhosted.org/packages/f7/db/171f09ab48499129d6f0f4e6d75149dbca99550b4822a99848414d1235c7/NGPIris-3.4.8.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.8 2022-11-23T15:18:34,444 Found link https://files.pythonhosted.org/packages/88/e1/77c334e7c72936f168c8003e80dd7c34359959379aac4a220eb9cfc42be0/NGPIris-4.0.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.0.0 2022-11-23T15:18:34,445 Found link https://files.pythonhosted.org/packages/a8/0a/5be2fcffc753c011fb7ca46b4b85885fcf0ce84016185ad5d0fdd0e9d346/NGPIris-4.0.1.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.0.1 2022-11-23T15:18:34,447 Found link https://files.pythonhosted.org/packages/11/ea/29ecef9a200c7244bd0ecb4178bf31278e500681d3ed2234f4d1b394a727/NGPIris-4.1.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.1.0 2022-11-23T15:18:34,448 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngpiris/ 2022-11-23T15:18:34,448 Getting page https://www.piwheels.org/simple/ngpiris/ 2022-11-23T15:18:34,451 Found index url https://www.piwheels.org/simple 2022-11-23T15:18:34,658 Fetched page https://www.piwheels.org/simple/ngpiris/ as text/html 2022-11-23T15:18:34,668 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-4.0.1-py3-none-any.whl#sha256=27f4612d2b8e55c501d1b0d184db6051438e11e1c34a8c7ce802f5198d07430d (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,669 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-4.0.0-py3-none-any.whl#sha256=c2c248431653bc75ec4b9309e8147c0dc95a7f691a36cfcab6476d56d07b9b93 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,669 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.8-py3-none-any.whl#sha256=6d5c467d91f4a078774067564ee465935ff2fdfed4110db75eb5ade851138b1e (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,670 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.5-py3-none-any.whl#sha256=25fe84f5af43720363d8235d6cb9b0f4300220f95e41ccd0d4712e9d9901874c (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,671 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.3-py3-none-any.whl#sha256=bcafb399a8ea27aa1ffd6b4ecad46be12868946bbccb4d65ac190ddb24ff94f1 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,671 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.0-py3-none-any.whl#sha256=a6ebd0e230567c71827dc2d3c2cf00fb1a9ecc0d9e88d0f2f72d381c9b714b74 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,672 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.2.0-py3-none-any.whl#sha256=570205a5723cadf5283b876e9660252c2f2aeee83a926924290b1b405b5063b2 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,672 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.3-py3-none-any.whl#sha256=7f5bdd637e2f76d2556e053a6419f22bcf55f1c701f85a25f2d6d2242316d5d1 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,673 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.2-py3-none-any.whl#sha256=c641248d1cd745848e1e17172315e26d9a5b1f285d82e00a13c828d2df52a42b (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,673 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.1-py3-none-any.whl#sha256=0e81c3cfead2a48f830959ae216820ff0fbca5855dbcf688bd2f48315be72860 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,674 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.0-py3-none-any.whl#sha256=c1e03dfb87bc818cd85e79c209f4472232fd2ebfff1ba7dc03bae3cdaf9bd233 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-11-23T15:18:34,674 Skipping link: not a file: https://www.piwheels.org/simple/ngpiris/ 2022-11-23T15:18:34,675 Skipping link: not a file: https://pypi.org/simple/ngpiris/ 2022-11-23T15:18:34,715 Given no hashes to check 1 links for project 'ngpiris': discarding no candidates 2022-11-23T15:18:34,745 Collecting ngpiris==4.1.0 2022-11-23T15:18:34,749 Created temporary directory: /tmp/pip-unpack-g2jjdsje 2022-11-23T15:18:34,988 Downloading NGPIris-4.1.0.tar.gz (71 kB) 2022-11-23T15:18:35,222 Added ngpiris==4.1.0 from https://files.pythonhosted.org/packages/11/ea/29ecef9a200c7244bd0ecb4178bf31278e500681d3ed2234f4d1b394a727/NGPIris-4.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-1thjld2u' 2022-11-23T15:18:35,232 Created temporary directory: /tmp/pip-build-env-swmpki_c 2022-11-23T15:18:35,243 Installing build dependencies: started 2022-11-23T15:18:35,246 Running command pip subprocess to install build dependencies 2022-11-23T15:18:37,957 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-11-23T15:18:38,776 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-23T15:18:38,830 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-23T15:18:42,705 Collecting setuptools>=42 2022-11-23T15:18:42,972 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.0-py3-none-any.whl (1.2 MB) 2022-11-23T15:18:43,612 Collecting wheel 2022-11-23T15:18:43,652 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-11-23T15:18:49,129 Installing collected packages: wheel, setuptools 2022-11-23T15:18:49,408 Creating /tmp/pip-build-env-swmpki_c/overlay/bin 2022-11-23T15:18:49,413 changing mode of /tmp/pip-build-env-swmpki_c/overlay/bin/wheel to 755 2022-11-23T15:18:54,224 Successfully installed setuptools-65.6.0 wheel-0.38.4 2022-11-23T15:18:54,255 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-11-23T15:18:54,256 [notice] To update, run: python3 -m pip install --upgrade pip 2022-11-23T15:18:54,688 Installing build dependencies: finished with status 'done' 2022-11-23T15:18:54,699 Getting requirements to build wheel: started 2022-11-23T15:18:54,702 Running command Getting requirements to build wheel 2022-11-23T15:18:57,105 running egg_info 2022-11-23T15:18:57,116 writing NGPIris.egg-info/PKG-INFO 2022-11-23T15:18:57,121 writing dependency_links to NGPIris.egg-info/dependency_links.txt 2022-11-23T15:18:57,125 writing entry points to NGPIris.egg-info/entry_points.txt 2022-11-23T15:18:57,128 writing requirements to NGPIris.egg-info/requires.txt 2022-11-23T15:18:57,130 writing top-level names to NGPIris.egg-info/top_level.txt 2022-11-23T15:18:57,173 reading manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-23T15:18:57,179 reading manifest template 'MANIFEST.in' 2022-11-23T15:18:57,182 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:57,183 !! 2022-11-23T15:18:57,184 ########################################################################## 2022-11-23T15:18:57,184 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:57,184 ########################################################################## 2022-11-23T15:18:57,185 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:57,186 `requires-python = '>=3.6'` 2022-11-23T15:18:57,187 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:57,187 consider this value unless 'requires-python' is listed as `dynamic`. 2022-11-23T15:18:57,188 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:57,189 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:57,189 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:57,190 follow strictly the standard. 2022-11-23T15:18:57,191 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-11-23T15:18:57,191 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:57,191 configuration. 2022-11-23T15:18:57,192 !! 2022-11-23T15:18:57,193 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:57,193 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:57,194 !! 2022-11-23T15:18:57,194 ########################################################################## 2022-11-23T15:18:57,195 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:57,195 ########################################################################## 2022-11-23T15:18:57,196 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:57,196 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-11-23T15:18:57,197 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:57,197 consider this value unless 'classifiers' is listed as `dynamic`. 2022-11-23T15:18:57,198 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:57,198 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:57,199 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:57,199 follow strictly the standard. 2022-11-23T15:18:57,199 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-11-23T15:18:57,200 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:57,200 configuration. 2022-11-23T15:18:57,201 !! 2022-11-23T15:18:57,202 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:57,203 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:57,203 !! 2022-11-23T15:18:57,204 ########################################################################## 2022-11-23T15:18:57,204 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:57,205 ########################################################################## 2022-11-23T15:18:57,206 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:57,206 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-11-23T15:18:57,207 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:57,207 consider this value unless 'urls' is listed as `dynamic`. 2022-11-23T15:18:57,208 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:57,209 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:57,209 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:57,210 follow strictly the standard. 2022-11-23T15:18:57,211 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-11-23T15:18:57,211 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:57,212 configuration. 2022-11-23T15:18:57,213 !! 2022-11-23T15:18:57,214 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:57,214 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:57,215 !! 2022-11-23T15:18:57,216 ########################################################################## 2022-11-23T15:18:57,216 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:57,217 ########################################################################## 2022-11-23T15:18:57,217 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:57,218 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-11-23T15:18:57,219 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:57,220 consider this value unless 'entry-points' is listed as `dynamic`. 2022-11-23T15:18:57,220 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:57,221 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:57,222 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:57,222 follow strictly the standard. 2022-11-23T15:18:57,223 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-11-23T15:18:57,223 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:57,224 configuration. 2022-11-23T15:18:57,225 !! 2022-11-23T15:18:57,226 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:57,226 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:57,227 !! 2022-11-23T15:18:57,228 ########################################################################## 2022-11-23T15:18:57,228 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:57,229 ########################################################################## 2022-11-23T15:18:57,230 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:57,231 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-11-23T15:18:57,231 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:57,232 consider this value unless 'dependencies' is listed as `dynamic`. 2022-11-23T15:18:57,233 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:57,233 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:57,234 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:57,234 follow strictly the standard. 2022-11-23T15:18:57,235 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-11-23T15:18:57,235 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:57,236 configuration. 2022-11-23T15:18:57,237 !! 2022-11-23T15:18:57,238 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:57,238 warning: no files found matching 'freeze.txt' 2022-11-23T15:18:57,239 warning: no files found matching 'profile.json' 2022-11-23T15:18:57,239 adding license file 'LICENSE' 2022-11-23T15:18:57,239 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-23T15:18:57,438 Getting requirements to build wheel: finished with status 'done' 2022-11-23T15:18:57,458 Created temporary directory: /tmp/pip-modern-metadata-ad4y0gdo 2022-11-23T15:18:57,464 Preparing metadata (pyproject.toml): started 2022-11-23T15:18:57,466 Running command Preparing metadata (pyproject.toml) 2022-11-23T15:18:59,680 running dist_info 2022-11-23T15:18:59,694 creating /tmp/pip-modern-metadata-ad4y0gdo/NGPIris.egg-info 2022-11-23T15:18:59,702 writing /tmp/pip-modern-metadata-ad4y0gdo/NGPIris.egg-info/PKG-INFO 2022-11-23T15:18:59,708 writing dependency_links to /tmp/pip-modern-metadata-ad4y0gdo/NGPIris.egg-info/dependency_links.txt 2022-11-23T15:18:59,712 writing entry points to /tmp/pip-modern-metadata-ad4y0gdo/NGPIris.egg-info/entry_points.txt 2022-11-23T15:18:59,715 writing requirements to /tmp/pip-modern-metadata-ad4y0gdo/NGPIris.egg-info/requires.txt 2022-11-23T15:18:59,717 writing top-level names to /tmp/pip-modern-metadata-ad4y0gdo/NGPIris.egg-info/top_level.txt 2022-11-23T15:18:59,719 writing manifest file '/tmp/pip-modern-metadata-ad4y0gdo/NGPIris.egg-info/SOURCES.txt' 2022-11-23T15:18:59,757 reading manifest file '/tmp/pip-modern-metadata-ad4y0gdo/NGPIris.egg-info/SOURCES.txt' 2022-11-23T15:18:59,764 reading manifest template 'MANIFEST.in' 2022-11-23T15:18:59,767 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:59,767 !! 2022-11-23T15:18:59,768 ########################################################################## 2022-11-23T15:18:59,769 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:59,769 ########################################################################## 2022-11-23T15:18:59,770 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:59,771 `requires-python = '>=3.6'` 2022-11-23T15:18:59,772 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:59,772 consider this value unless 'requires-python' is listed as `dynamic`. 2022-11-23T15:18:59,773 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:59,774 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:59,774 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:59,775 follow strictly the standard. 2022-11-23T15:18:59,775 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-11-23T15:18:59,776 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:59,776 configuration. 2022-11-23T15:18:59,777 !! 2022-11-23T15:18:59,778 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:59,778 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:59,778 !! 2022-11-23T15:18:59,779 ########################################################################## 2022-11-23T15:18:59,779 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:59,780 ########################################################################## 2022-11-23T15:18:59,780 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:59,781 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-11-23T15:18:59,781 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:59,782 consider this value unless 'classifiers' is listed as `dynamic`. 2022-11-23T15:18:59,782 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:59,783 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:59,784 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:59,784 follow strictly the standard. 2022-11-23T15:18:59,785 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-11-23T15:18:59,785 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:59,785 configuration. 2022-11-23T15:18:59,786 !! 2022-11-23T15:18:59,787 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:59,787 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:59,787 !! 2022-11-23T15:18:59,788 ########################################################################## 2022-11-23T15:18:59,789 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:59,789 ########################################################################## 2022-11-23T15:18:59,789 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:59,790 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-11-23T15:18:59,791 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:59,791 consider this value unless 'urls' is listed as `dynamic`. 2022-11-23T15:18:59,792 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:59,792 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:59,793 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:59,793 follow strictly the standard. 2022-11-23T15:18:59,794 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-11-23T15:18:59,794 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:59,794 configuration. 2022-11-23T15:18:59,795 !! 2022-11-23T15:18:59,796 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:59,796 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:59,796 !! 2022-11-23T15:18:59,797 ########################################################################## 2022-11-23T15:18:59,798 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:59,798 ########################################################################## 2022-11-23T15:18:59,799 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:59,799 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-11-23T15:18:59,800 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:59,800 consider this value unless 'entry-points' is listed as `dynamic`. 2022-11-23T15:18:59,801 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:59,802 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:59,802 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:59,802 follow strictly the standard. 2022-11-23T15:18:59,803 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-11-23T15:18:59,804 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:59,804 configuration. 2022-11-23T15:18:59,806 !! 2022-11-23T15:18:59,806 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:59,807 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:18:59,807 !! 2022-11-23T15:18:59,808 ########################################################################## 2022-11-23T15:18:59,809 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:18:59,809 ########################################################################## 2022-11-23T15:18:59,810 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:18:59,811 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-11-23T15:18:59,812 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:18:59,812 consider this value unless 'dependencies' is listed as `dynamic`. 2022-11-23T15:18:59,813 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:18:59,814 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:18:59,814 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:18:59,815 follow strictly the standard. 2022-11-23T15:18:59,815 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-11-23T15:18:59,816 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:18:59,816 configuration. 2022-11-23T15:18:59,818 !! 2022-11-23T15:18:59,819 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:18:59,819 warning: no files found matching 'freeze.txt' 2022-11-23T15:18:59,819 warning: no files found matching 'profile.json' 2022-11-23T15:18:59,820 adding license file 'LICENSE' 2022-11-23T15:18:59,820 writing manifest file '/tmp/pip-modern-metadata-ad4y0gdo/NGPIris.egg-info/SOURCES.txt' 2022-11-23T15:18:59,821 creating '/tmp/pip-modern-metadata-ad4y0gdo/NGPIris-4.1.0.dist-info' 2022-11-23T15:19:00,107 Preparing metadata (pyproject.toml): finished with status 'done' 2022-11-23T15:19:00,123 Source in /tmp/pip-wheel-bskui4z9/ngpiris_0859207998b94024a4cf51a003482b71 has version 4.1.0, which satisfies requirement ngpiris==4.1.0 from https://files.pythonhosted.org/packages/11/ea/29ecef9a200c7244bd0ecb4178bf31278e500681d3ed2234f4d1b394a727/NGPIris-4.1.0.tar.gz 2022-11-23T15:19:00,125 Removed ngpiris==4.1.0 from https://files.pythonhosted.org/packages/11/ea/29ecef9a200c7244bd0ecb4178bf31278e500681d3ed2234f4d1b394a727/NGPIris-4.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-1thjld2u' 2022-11-23T15:19:00,139 Created temporary directory: /tmp/pip-unpack-ha11vsqe 2022-11-23T15:19:00,141 Building wheels for collected packages: ngpiris 2022-11-23T15:19:00,150 Created temporary directory: /tmp/pip-wheel-0p83h0ku 2022-11-23T15:19:00,150 Destination directory: /tmp/pip-wheel-0p83h0ku 2022-11-23T15:19:00,155 Building wheel for ngpiris (pyproject.toml): started 2022-11-23T15:19:00,157 Running command Building wheel for ngpiris (pyproject.toml) 2022-11-23T15:19:02,324 running bdist_wheel 2022-11-23T15:19:02,355 running build 2022-11-23T15:19:02,355 running build_py 2022-11-23T15:19:02,367 creating build 2022-11-23T15:19:02,368 creating build/lib 2022-11-23T15:19:02,369 creating build/lib/tests 2022-11-23T15:19:02,371 copying tests/__init__.py -> build/lib/tests 2022-11-23T15:19:02,374 copying tests/test_cmds.py -> build/lib/tests 2022-11-23T15:19:02,378 copying tests/test_hcp.py -> build/lib/tests 2022-11-23T15:19:02,382 creating build/lib/NGPIris 2022-11-23T15:19:02,384 copying NGPIris/__init__.py -> build/lib/NGPIris 2022-11-23T15:19:02,389 creating build/lib/NGPIris/preproc 2022-11-23T15:19:02,390 copying NGPIris/preproc/__init__.py -> build/lib/NGPIris/preproc 2022-11-23T15:19:02,393 copying NGPIris/preproc/preproc.py -> build/lib/NGPIris/preproc 2022-11-23T15:19:02,398 creating build/lib/NGPIris/hci 2022-11-23T15:19:02,400 copying NGPIris/hci/__init__.py -> build/lib/NGPIris/hci 2022-11-23T15:19:02,404 copying NGPIris/hci/hci.py -> build/lib/NGPIris/hci 2022-11-23T15:19:02,409 creating build/lib/NGPIris/cli 2022-11-23T15:19:02,411 copying NGPIris/cli/__init__.py -> build/lib/NGPIris/cli 2022-11-23T15:19:02,414 copying NGPIris/cli/utils.py -> build/lib/NGPIris/cli 2022-11-23T15:19:02,417 copying NGPIris/cli/base.py -> build/lib/NGPIris/cli 2022-11-23T15:19:02,421 copying NGPIris/cli/functions.py -> build/lib/NGPIris/cli 2022-11-23T15:19:02,427 creating build/lib/NGPIris/hcp 2022-11-23T15:19:02,429 copying NGPIris/hcp/__init__.py -> build/lib/NGPIris/hcp 2022-11-23T15:19:02,432 copying NGPIris/hcp/interactive.py -> build/lib/NGPIris/hcp 2022-11-23T15:19:02,436 copying NGPIris/hcp/errors.py -> build/lib/NGPIris/hcp 2022-11-23T15:19:02,440 copying NGPIris/hcp/config.py -> build/lib/NGPIris/hcp 2022-11-23T15:19:02,443 copying NGPIris/hcp/helpers.py -> build/lib/NGPIris/hcp 2022-11-23T15:19:02,447 copying NGPIris/hcp/hcp.py -> build/lib/NGPIris/hcp 2022-11-23T15:19:02,451 running egg_info 2022-11-23T15:19:02,471 writing NGPIris.egg-info/PKG-INFO 2022-11-23T15:19:02,475 writing dependency_links to NGPIris.egg-info/dependency_links.txt 2022-11-23T15:19:02,478 writing entry points to NGPIris.egg-info/entry_points.txt 2022-11-23T15:19:02,480 writing requirements to NGPIris.egg-info/requires.txt 2022-11-23T15:19:02,483 writing top-level names to NGPIris.egg-info/top_level.txt 2022-11-23T15:19:02,506 reading manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-23T15:19:02,511 reading manifest template 'MANIFEST.in' 2022-11-23T15:19:02,513 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:19:02,514 !! 2022-11-23T15:19:02,515 ########################################################################## 2022-11-23T15:19:02,515 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:19:02,516 ########################################################################## 2022-11-23T15:19:02,517 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:19:02,518 `requires-python = '>=3.6'` 2022-11-23T15:19:02,518 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:19:02,519 consider this value unless 'requires-python' is listed as `dynamic`. 2022-11-23T15:19:02,519 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:19:02,520 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:19:02,521 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:19:02,521 follow strictly the standard. 2022-11-23T15:19:02,522 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-11-23T15:19:02,522 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:19:02,522 configuration. 2022-11-23T15:19:02,523 !! 2022-11-23T15:19:02,524 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:19:02,524 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:19:02,524 !! 2022-11-23T15:19:02,525 ########################################################################## 2022-11-23T15:19:02,526 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:19:02,526 ########################################################################## 2022-11-23T15:19:02,527 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:19:02,527 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-11-23T15:19:02,528 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:19:02,528 consider this value unless 'classifiers' is listed as `dynamic`. 2022-11-23T15:19:02,529 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:19:02,529 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:19:02,529 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:19:02,530 follow strictly the standard. 2022-11-23T15:19:02,530 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-11-23T15:19:02,531 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:19:02,531 configuration. 2022-11-23T15:19:02,532 !! 2022-11-23T15:19:02,533 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:19:02,533 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:19:02,533 !! 2022-11-23T15:19:02,534 ########################################################################## 2022-11-23T15:19:02,535 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:19:02,535 ########################################################################## 2022-11-23T15:19:02,536 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:19:02,536 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-11-23T15:19:02,537 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:19:02,537 consider this value unless 'urls' is listed as `dynamic`. 2022-11-23T15:19:02,538 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:19:02,539 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:19:02,539 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:19:02,539 follow strictly the standard. 2022-11-23T15:19:02,540 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-11-23T15:19:02,540 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:19:02,541 configuration. 2022-11-23T15:19:02,542 !! 2022-11-23T15:19:02,543 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:19:02,543 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:19:02,544 !! 2022-11-23T15:19:02,545 ########################################################################## 2022-11-23T15:19:02,545 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:19:02,546 ########################################################################## 2022-11-23T15:19:02,546 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:19:02,547 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-11-23T15:19:02,548 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:19:02,549 consider this value unless 'entry-points' is listed as `dynamic`. 2022-11-23T15:19:02,551 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:19:02,552 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:19:02,552 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:19:02,552 follow strictly the standard. 2022-11-23T15:19:02,553 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-11-23T15:19:02,553 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:19:02,554 configuration. 2022-11-23T15:19:02,555 !! 2022-11-23T15:19:02,556 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:19:02,556 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-11-23T15:19:02,557 !! 2022-11-23T15:19:02,558 ########################################################################## 2022-11-23T15:19:02,558 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-11-23T15:19:02,559 ########################################################################## 2022-11-23T15:19:02,559 The following seems to be defined outside of `pyproject.toml`: 2022-11-23T15:19:02,560 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-11-23T15:19:02,561 According to the spec (see the link below), however, setuptools CANNOT 2022-11-23T15:19:02,561 consider this value unless 'dependencies' is listed as `dynamic`. 2022-11-23T15:19:02,562 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-11-23T15:19:02,563 For the time being, `setuptools` will still consider the given value (as a 2022-11-23T15:19:02,563 **transitional** measure), but please note that future releases of setuptools will 2022-11-23T15:19:02,564 follow strictly the standard. 2022-11-23T15:19:02,564 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-11-23T15:19:02,565 remove the `[project]` table from your file and rely entirely on other means of 2022-11-23T15:19:02,565 configuration. 2022-11-23T15:19:02,566 !! 2022-11-23T15:19:02,567 warnings.warn(msg, _WouldIgnoreField) 2022-11-23T15:19:02,567 warning: no files found matching 'freeze.txt' 2022-11-23T15:19:02,567 warning: no files found matching 'profile.json' 2022-11-23T15:19:02,568 adding license file 'LICENSE' 2022-11-23T15:19:02,568 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-11-23T15:19:02,568 creating build/lib/tests/data 2022-11-23T15:19:02,569 copying tests/data/test.json -> build/lib/tests/data 2022-11-23T15:19:02,569 copying tests/data/test_reads_R1.fasterq -> build/lib/tests/data 2022-11-23T15:19:02,569 copying tests/data/test_reads_R1.fastq.gz -> build/lib/tests/data 2022-11-23T15:19:02,569 copying NGPIris/hci/template_query.json -> build/lib/NGPIris/hci 2022-11-23T15:19:02,585 installing to build/bdist.linux-armv7l/wheel 2022-11-23T15:19:02,585 running install 2022-11-23T15:19:02,649 running install_lib 2022-11-23T15:19:02,660 creating build/bdist.linux-armv7l 2022-11-23T15:19:02,660 creating build/bdist.linux-armv7l/wheel 2022-11-23T15:19:02,664 creating build/bdist.linux-armv7l/wheel/tests 2022-11-23T15:19:02,666 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-23T15:19:02,670 creating build/bdist.linux-armv7l/wheel/tests/data 2022-11-23T15:19:02,672 copying build/lib/tests/data/test_reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/tests/data 2022-11-23T15:19:02,676 copying build/lib/tests/data/test_reads_R1.fasterq -> build/bdist.linux-armv7l/wheel/tests/data 2022-11-23T15:19:02,683 copying build/lib/tests/data/test.json -> build/bdist.linux-armv7l/wheel/tests/data 2022-11-23T15:19:02,686 copying build/lib/tests/test_cmds.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-23T15:19:02,690 copying build/lib/tests/test_hcp.py -> build/bdist.linux-armv7l/wheel/tests 2022-11-23T15:19:02,695 creating build/bdist.linux-armv7l/wheel/NGPIris 2022-11-23T15:19:02,697 copying build/lib/NGPIris/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris 2022-11-23T15:19:02,702 creating build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-11-23T15:19:02,704 copying build/lib/NGPIris/preproc/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-11-23T15:19:02,707 copying build/lib/NGPIris/preproc/preproc.py -> build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-11-23T15:19:02,713 creating build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-23T15:19:02,714 copying build/lib/NGPIris/hci/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-23T15:19:02,718 copying build/lib/NGPIris/hci/hci.py -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-23T15:19:02,722 copying build/lib/NGPIris/hci/template_query.json -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-11-23T15:19:02,727 creating build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T15:19:02,728 copying build/lib/NGPIris/cli/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T15:19:02,732 copying build/lib/NGPIris/cli/utils.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T15:19:02,736 copying build/lib/NGPIris/cli/base.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T15:19:02,740 copying build/lib/NGPIris/cli/functions.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-11-23T15:19:02,746 creating build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T15:19:02,747 copying build/lib/NGPIris/hcp/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T15:19:02,752 copying build/lib/NGPIris/hcp/interactive.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T15:19:02,756 copying build/lib/NGPIris/hcp/errors.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T15:19:02,760 copying build/lib/NGPIris/hcp/config.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T15:19:02,764 copying build/lib/NGPIris/hcp/helpers.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T15:19:02,767 copying build/lib/NGPIris/hcp/hcp.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-11-23T15:19:02,772 running install_data 2022-11-23T15:19:02,784 creating build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data 2022-11-23T15:19:02,785 creating build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data 2022-11-23T15:19:02,787 creating build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data/NGPIris 2022-11-23T15:19:02,789 copying config.ini -> build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data/NGPIris 2022-11-23T15:19:02,793 creating build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data/reference 2022-11-23T15:19:02,795 copying reference/covidMetadataAllowedValues.csv -> build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data/reference 2022-11-23T15:19:02,799 copying reference/covidMetadataTemplate.csv -> build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data/reference 2022-11-23T15:19:02,803 creating build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data/testdata 2022-11-23T15:19:02,804 copying tests/data/test_reads_R1.fasterq -> build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data/testdata 2022-11-23T15:19:02,811 copying tests/data/test_reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data/testdata 2022-11-23T15:19:02,814 copying tests/data/test.json -> build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.data/data/testdata 2022-11-23T15:19:02,817 running install_egg_info 2022-11-23T15:19:02,827 Copying NGPIris.egg-info to build/bdist.linux-armv7l/wheel/NGPIris-4.1.0-py3.7.egg-info 2022-11-23T15:19:02,853 running install_scripts 2022-11-23T15:19:02,897 creating build/bdist.linux-armv7l/wheel/NGPIris-4.1.0.dist-info/WHEEL 2022-11-23T15:19:02,903 creating '/tmp/pip-wheel-0p83h0ku/tmp2ucgsyfs/NGPIris-4.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-23T15:19:02,908 adding 'NGPIris/__init__.py' 2022-11-23T15:19:02,911 adding 'NGPIris/cli/__init__.py' 2022-11-23T15:19:02,914 adding 'NGPIris/cli/base.py' 2022-11-23T15:19:02,917 adding 'NGPIris/cli/functions.py' 2022-11-23T15:19:02,920 adding 'NGPIris/cli/utils.py' 2022-11-23T15:19:02,924 adding 'NGPIris/hci/__init__.py' 2022-11-23T15:19:02,927 adding 'NGPIris/hci/hci.py' 2022-11-23T15:19:02,929 adding 'NGPIris/hci/template_query.json' 2022-11-23T15:19:02,933 adding 'NGPIris/hcp/__init__.py' 2022-11-23T15:19:02,935 adding 'NGPIris/hcp/config.py' 2022-11-23T15:19:02,937 adding 'NGPIris/hcp/errors.py' 2022-11-23T15:19:02,942 adding 'NGPIris/hcp/hcp.py' 2022-11-23T15:19:02,945 adding 'NGPIris/hcp/helpers.py' 2022-11-23T15:19:02,948 adding 'NGPIris/hcp/interactive.py' 2022-11-23T15:19:02,952 adding 'NGPIris/preproc/__init__.py' 2022-11-23T15:19:02,955 adding 'NGPIris/preproc/preproc.py' 2022-11-23T15:19:02,960 adding 'NGPIris-4.1.0.data/data/NGPIris/config.ini' 2022-11-23T15:19:02,964 adding 'NGPIris-4.1.0.data/data/reference/covidMetadataAllowedValues.csv' 2022-11-23T15:19:02,966 adding 'NGPIris-4.1.0.data/data/reference/covidMetadataTemplate.csv' 2022-11-23T15:19:02,970 adding 'NGPIris-4.1.0.data/data/testdata/test.json' 2022-11-23T15:19:02,983 adding 'NGPIris-4.1.0.data/data/testdata/test_reads_R1.fasterq' 2022-11-23T15:19:02,987 adding 'NGPIris-4.1.0.data/data/testdata/test_reads_R1.fastq.gz' 2022-11-23T15:19:02,993 adding 'tests/__init__.py' 2022-11-23T15:19:02,996 adding 'tests/test_cmds.py' 2022-11-23T15:19:02,998 adding 'tests/test_hcp.py' 2022-11-23T15:19:03,002 adding 'tests/data/test.json' 2022-11-23T15:19:03,015 adding 'tests/data/test_reads_R1.fasterq' 2022-11-23T15:19:03,018 adding 'tests/data/test_reads_R1.fastq.gz' 2022-11-23T15:19:03,026 adding 'NGPIris-4.1.0.dist-info/LICENSE' 2022-11-23T15:19:03,029 adding 'NGPIris-4.1.0.dist-info/METADATA' 2022-11-23T15:19:03,031 adding 'NGPIris-4.1.0.dist-info/WHEEL' 2022-11-23T15:19:03,033 adding 'NGPIris-4.1.0.dist-info/entry_points.txt' 2022-11-23T15:19:03,035 adding 'NGPIris-4.1.0.dist-info/top_level.txt' 2022-11-23T15:19:03,038 adding 'NGPIris-4.1.0.dist-info/RECORD' 2022-11-23T15:19:03,046 removing build/bdist.linux-armv7l/wheel 2022-11-23T15:19:03,074 /tmp/pip-build-env-swmpki_c/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tests.data' as data is deprecated, please list it in `packages`. 2022-11-23T15:19:03,075 !! 2022-11-23T15:19:03,076 ############################ 2022-11-23T15:19:03,077 # Package would be ignored # 2022-11-23T15:19:03,077 ############################ 2022-11-23T15:19:03,077 Python recognizes 'tests.data' as an importable package, 2022-11-23T15:19:03,078 but it is not listed in the `packages` configuration of setuptools. 2022-11-23T15:19:03,078 'tests.data' has been automatically added to the distribution only 2022-11-23T15:19:03,079 because it may contain data files, but this behavior is likely to change 2022-11-23T15:19:03,079 in future versions of setuptools (and therefore is considered deprecated). 2022-11-23T15:19:03,080 Please make sure that 'tests.data' is included as a package by using 2022-11-23T15:19:03,081 the `packages` configuration field or the proper discovery methods 2022-11-23T15:19:03,081 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-23T15:19:03,082 instead of `find_packages(...)`/`find:`). 2022-11-23T15:19:03,083 You can read more about "package discovery" and "data files" on setuptools 2022-11-23T15:19:03,083 documentation page. 2022-11-23T15:19:03,084 !! 2022-11-23T15:19:03,085 check.warn(importable) 2022-11-23T15:19:03,311 Building wheel for ngpiris (pyproject.toml): finished with status 'done' 2022-11-23T15:19:03,330 Created wheel for ngpiris: filename=NGPIris-4.1.0-py3-none-any.whl size=120433 sha256=6d3d7a5402690c39b5c4c62436861135cf1debd77396302b5ff7ab26c19db4ae 2022-11-23T15:19:03,332 Stored in directory: /tmp/pip-ephem-wheel-cache-xhqtp8b4/wheels/10/67/b1/58ac7f36a87ce0174947f566af5ab549db75ae47639454b1ca 2022-11-23T15:19:03,363 Successfully built ngpiris 2022-11-23T15:19:03,378 Removed build tracker: '/tmp/pip-build-tracker-1thjld2u'